HHsearch alignment for GI: 254780592 and conserved domain: pfam10602
>pfam10602 RPN7 26S proteasome subunit RPN7. RPN7 (known as the non ATPase regulatory subunit 6 in higher eukaryotes) is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae to be required for structural integrity. The 26S proteasome is is involved in the ATP-dependent degradation of ubiquitinated proteins.
Probab=90.09 E-value=1.1 Score=21.88 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--CHHHHHHH---
Q ss_conf 999999999987410012446665566327521---0013555532100000112588764221100--00233566---
Q gi|254780592|r 71 MIGIVYADVLRRVGRTAQALAVMRQVAILYPED---QEVLAAYGKSLANAGYLDEGLDAINRAQRPD--IPDWQLIS--- 142 (271)
Q Consensus 71 ~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~--- 142 (271)
T Consensus 37 ~~~~~l~~~y~~iGd~~~A~k~y~~~~~~~ts~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~e~ggDw~r~nrlk 116 (174)
T pfam10602 37 MANLDLGEHYAKIGDLENALKAYSRAREYCTSLGHKIDMCLNLIRVGIFFNDWDHVSKYIEKAKSLIEKGGDWERRNRLK 116 (174)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99999899999966799999999998831788459999999999999997009999999999985651445587898899
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf -999999974211111000000000
Q gi|254780592|r 143 -AKGSVLAQMGKHSEALIEYERALE 166 (271)
Q Consensus 143 -~lg~~~~~~~~~~~A~~~~~~~~~ 166 (271)
T Consensus 117 ~y~Gl~~l~~r~f~~AA~~fl~~~~ 141 (174)
T pfam10602 117 VYEGLALLAIRDFKEAAKLFLDSLS 141 (174)
T ss_pred HHHHHHHHHHCHHHHHHHHHHCCCC
T ss_conf 9999999971649999999963767