HHsearch alignment for GI: 254780592 and conserved domain: smart00299
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.00 E-value=0.094 Score=28.41 Aligned_cols=130 Identities=8% Similarity=0.089 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 79999999999874100124466655663275210013555532100000112588764221100002335669999999
Q gi|254780592|r 70 KMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLA 149 (271)
Q Consensus 70 ~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~ 149 (271)
T Consensus 7 ~~~~~~vi~~~e~~~~~~~L~~~L~~~~~~~~~~~~l~~~Li~~yak~~~-~~~le~~~~~----~~~yd-~~~i~~~C~ 80 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDP-QKEIERLDNK----SNHYD-IEKVGKLCE 80 (140)
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-HHHHHHHHHC----CCCCC-HHHHHHHHH
T ss_conf 54799999999987999999999999984576670799999999998293-8689998703----67588-999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 7421111100000000000000012457776543-32235543599999995389854788899999998
Q gi|254780592|r 150 QMGKHSEALIEYERALELSPNESSIVSNIAMSYL-LMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGL 218 (271)
Q Consensus 150 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~ 218 (271)
T Consensus 81 ~~~l~~~a~~ly~~~~~----~~~----ai~~~i~~~~~~~~aie~~~~~-----~~~e~w~~l~~~~ld 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGN----FKD----AIVTLIEHLGNYEKAIEYFVKQ-----NNPELWAEVLKALLD 137 (140)
T ss_pred HHCCHHHHHHHHHHCCC----HHH----HHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHC
T ss_conf 81339999999987064----999----9999999867499999999984-----999999999999855