RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780592|ref|YP_003065005.1| TPR repeat-containing protein
[Candidatus Liberibacter asiaticus str. psy62]
         (271 letters)



>gnl|CDD|34615 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR
           repeats [Intracellular trafficking and secretion].
          Length = 257

 Score =  148 bits (374), Expect = 2e-36
 Identities = 89/225 (39%), Positives = 125/225 (55%), Gaps = 3/225 (1%)

Query: 37  SIPDPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQV 96
           +   PES   M   Q     + +G     + ++  I    A  L   G    +LAV+++ 
Sbjct: 36  ATGAPESSLAMRQTQ--GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKS 92

Query: 97  AILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSE 156
           AI YP+D+E+LAA GK+    G   E +  + +A R    DW+  +  G+ L Q+G+  E
Sbjct: 93  AIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDE 152

Query: 157 ALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVV 216
           A   Y +ALEL+PNE SI +N+ MS LL GDL+ AE  L  A     ADSR+RQNLALVV
Sbjct: 153 ARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVV 212

Query: 217 GLQGRMKEAYSIASQELSPEEATRNIKYIKSILSQRDPWKKIAKA 261
           GLQG  +EA  IA QEL  E+A  N+  +++  SQ   W ++AK 
Sbjct: 213 GLQGDFREAEDIAVQELLSEQAANNVAALRAAASQSGAWTQLAKK 257


>gnl|CDD|29151 cd00189, TPR, Tetratricopeptide repeat domain; typically contains
           34 amino acids
           [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
           X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found
           in a variety of organisms including bacteria,
           cyanobacteria, yeast, fungi, plants, and humans in
           various subcellular locations; involved in a variety of
           functions including protein-protein interactions, but
           common features in the interaction partners have not
           been defined; involved in chaperone, cell-cycle,
           transciption, and protein transport complexes; the
           number of TPR motifs varies among proteins (1,3-11,13
           15,16,19); 5-6 tandem repeats generate a right-handed
           helical structure with an amphipathic channel that is
           thought to accomodate an alpha-helix of a target
           protein; it has been proposed that TPR proteins
           preferably interact with WD-40 repeat proteins, but in
           many instances several TPR-proteins seem to aggregate to
           multi-protein complexes; examples of TPR-proteins
           include, Cdc16p, Cdc23p and Cdc27p components of the
           cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal
           targeting signals, the Tom70p co-receptor for
           mitochondrial targeting signals, Ser/Thr phosphatase 5C
           and the p110 subunit of O-GlcNAc transferase; three
           copies of the repeat are present here.
          Length = 100

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 27/94 (28%), Positives = 43/94 (45%)

Query: 105 EVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERA 164
           E L   G      G  DE L+   +A   D  +        +   ++GK+ EAL +YE+A
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 165 LELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFA 198
           LEL P+ +    N+ ++Y  +G  + A E    A
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94



 Score = 49.7 bits (118), Expect = 8e-07
 Identities = 25/87 (28%), Positives = 46/87 (52%)

Query: 139 QLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFA 198
           + +   G++  ++G + EAL  YE+ALEL P+ +    N+A +Y  +G  + A E    A
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 199 SQMIGADSRIRQNLALVVGLQGRMKEA 225
            ++   +++   NL L     G+ +EA
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEA 87



 Score = 43.1 bits (101), Expect = 8e-05
 Identities = 24/94 (25%), Positives = 43/94 (45%)

Query: 77  ADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIP 136
            ++  ++G   +AL    +   L P++ +       +    G  +E L+   +A   D  
Sbjct: 7   GNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66

Query: 137 DWQLISAKGSVLAQMGKHSEALIEYERALELSPN 170
           + +     G    ++GK+ EAL  YE+ALEL PN
Sbjct: 67  NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100


>gnl|CDD|36341 KOG1126, KOG1126, KOG1126, DNA-binding cell division cycle control
           protein [Cell cycle control, cell division, chromosome
           partitioning].
          Length = 638

 Score = 46.2 bits (109), Expect = 9e-06
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 4/130 (3%)

Query: 72  IGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQ 131
           +G VY     +  +   A    ++   + P +  +L   G+        D+ L    +A 
Sbjct: 495 LGTVY----LKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAI 550

Query: 132 RPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTA 191
             D  +      + S+L  +G++ EAL E E   EL P ESS+ + +   Y  +G+   A
Sbjct: 551 HLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLA 610

Query: 192 EEKLRFASQM 201
                +A  +
Sbjct: 611 LLHFSWALDL 620



 Score = 38.8 bits (90), Expect = 0.002
 Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 2/122 (1%)

Query: 120 LDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIA 179
            D+ + +  +A   D   +      G+V  +  K   A   +++A+E++P+ S I+ +I 
Sbjct: 471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIG 530

Query: 180 MSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQ--ELSPEE 237
                +     A +    A  +   +   + + A ++   GR  EA     +  EL P+E
Sbjct: 531 RIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQE 590

Query: 238 AT 239
           ++
Sbjct: 591 SS 592



 Score = 31.5 bits (71), Expect = 0.28
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 4/108 (3%)

Query: 139 QLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFA 198
            ++   G +  Q+ +  +AL  YE+A+ L P       + A     +G    A ++L   
Sbjct: 524 VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEEL 583

Query: 199 SQMIGADSRIRQNLALVVGLQGRMKEA---YSIASQELSPEEATRNIK 243
            +++  +S +   L  +    G    A   +S A  +L P+ A   IK
Sbjct: 584 KELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL-DLDPKGAQIQIK 630



 Score = 29.6 bits (66), Expect = 1.1
 Identities = 23/137 (16%), Positives = 51/137 (37%)

Query: 47  MNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEV 106
           +  E+L           + +  N +I      +  ++ R  +AL +  +   L P++   
Sbjct: 500 LKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLC 559

Query: 107 LAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALE 166
                  L + G   E L  +   +     +  + +  G +  ++G    AL+ +  AL+
Sbjct: 560 KYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619

Query: 167 LSPNESSIVSNIAMSYL 183
           L P  + I    A+  +
Sbjct: 620 LDPKGAQIQIKAAIERM 636


>gnl|CDD|39826 KOG4626, KOG4626, KOG4626, O-linked N-acetylglucosamine transferase
           OGT [Carbohydrate transport and metabolism,
           Posttranslational modification, protein turnover,
           chaperones, Signal transduction mechanisms].
          Length = 966

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 27/116 (23%), Positives = 50/116 (43%)

Query: 76  YADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDI 135
            A++L+  G+   ALA+ R    L P+  +       +L   G L+  +     A + + 
Sbjct: 122 LANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNP 181

Query: 136 PDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTA 191
             +   S  G++L   G+  EA   Y +A+E  P  +   SN+   +   G++  A
Sbjct: 182 DLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLA 237



 Score = 43.1 bits (101), Expect = 8e-05
 Identities = 34/157 (21%), Positives = 61/157 (38%)

Query: 77  ADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIP 136
           A+ L+  G   +A+    +   L P   + +   G      G ++E      +A      
Sbjct: 327 ANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE 386

Query: 137 DWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLR 196
                +   S+  Q G   +A++ Y+ AL + P  +  +SN+  +Y  MGD+  A +   
Sbjct: 387 FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYT 446

Query: 197 FASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQEL 233
            A Q+    +    NLA +    G + EA       L
Sbjct: 447 RAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483



 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 4/149 (2%)

Query: 79  VLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQR--PDIP 136
           +L+  GR  +A A   +     P      +  G      G +   +     A +  P+  
Sbjct: 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL 252

Query: 137 DWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLR 196
           D  +    G+V  +      A+  Y RAL L PN +    N+A  Y   G L  A +  +
Sbjct: 253 DAYI--NLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYK 310

Query: 197 FASQMIGADSRIRQNLALVVGLQGRMKEA 225
            A ++         NLA  +  +G + EA
Sbjct: 311 RALELQPNFPDAYNNLANALKDKGSVTEA 339



 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 24/86 (27%), Positives = 43/86 (50%)

Query: 142 SAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQM 201
           S   ++L + G+  +AL  Y  A+EL P       N+A + +  GDL+ A +    A Q+
Sbjct: 120 SNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL 179

Query: 202 IGADSRIRQNLALVVGLQGRMKEAYS 227
                  R +L  ++  +GR++EA +
Sbjct: 180 NPDLYCARSDLGNLLKAEGRLEEAKA 205



 Score = 35.4 bits (81), Expect = 0.017
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 7/117 (5%)

Query: 145 GSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGA 204
             +  + G    A+  Y+RALEL PN     +N+A +    G +  A +    A ++   
Sbjct: 293 ACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN 352

Query: 205 DSRIRQNLALVVGLQGRMKEAYSI--ASQELSPE--EATRNIKYIKSILSQRDPWKK 257
            +    NL  +   QG+++EA  +   + E+ PE   A  N   + SI  Q+     
Sbjct: 353 HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNN---LASIYKQQGNLDD 406



 Score = 27.3 bits (60), Expect = 4.1
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 4/105 (3%)

Query: 77  ADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRA--QRPD 134
           A + ++ G    A+   ++   + P   + L+  G +    G +   +    RA    P 
Sbjct: 395 ASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT 454

Query: 135 IPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIA 179
             +    S   S+    G   EA+  Y  AL+L P+      N+ 
Sbjct: 455 FAEAH--SNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL 497


>gnl|CDD|36388 KOG1173, KOG1173, KOG1173, Anaphase-promoting complex (APC), Cdc16
           subunit [Cell cycle control, cell division, chromosome
           partitioning, Posttranslational modification, protein
           turnover, chaperones].
          Length = 611

 Score = 43.0 bits (101), Expect = 9e-05
 Identities = 31/151 (20%), Positives = 61/151 (40%), Gaps = 10/151 (6%)

Query: 93  MRQVAILYPEDQEVLAAYGKSLANAGYLDEGLD------AINRAQRPDIPDWQ-LISAKG 145
            +Q   + P D  VL   G          E L        + ++   +   W+  ++  G
Sbjct: 403 FKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLG 462

Query: 146 SVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD 205
               ++ K+ EA+  Y++AL LSP ++S  ++I   Y L+G+L  A +    A  +   +
Sbjct: 463 HAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522

Query: 206 SRIRQNLALVVGLQGRMKEAYSIASQELSPE 236
             I + L L +      +    + S++    
Sbjct: 523 IFISELLKLAIED---SECKSGVDSKDYITC 550


>gnl|CDD|39364 KOG4162, KOG4162, KOG4162, Predicted calmodulin-binding protein
           [Signal transduction mechanisms].
          Length = 799

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 19/155 (12%)

Query: 75  VYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPD 134
                + R+    + L   ++   L    +  L          GYL  G+    +A++ +
Sbjct: 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKP-------RGYLFLGIAYGFQARQAN 451

Query: 135 IPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEK 194
           +              +   H ++L   E A++  P +  ++  +A+ Y     L +A + 
Sbjct: 452 LKS-----------ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDY 500

Query: 195 LRFASQMIGADS-RIRQNLALVVGLQGRMKEAYSI 228
            R A  +   DS +    LALV+  Q R+KEA  +
Sbjct: 501 AREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535



 Score = 29.6 bits (66), Expect = 1.0
 Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 8/87 (9%)

Query: 144 KGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIG 203
                +  G  S+A+     +L+ S   S I   +  S L +  LK  EE L +A + I 
Sbjct: 363 LALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAIS 422

Query: 204 A--------DSRIRQNLALVVGLQGRM 222
                      R    L +  G Q R 
Sbjct: 423 LLGGQRSHLKPRGYLFLGIAYGFQARQ 449


>gnl|CDD|36340 KOG1125, KOG1125, KOG1125, TPR repeat-containing protein [General
           function prediction only].
          Length = 579

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 6/180 (3%)

Query: 73  GIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQR 132
             + +  L  +      L   RQ+      D +V +  G     +G  D  +D    A +
Sbjct: 403 SFLDSSHLAHI--QELFLEAARQLPT--KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ 458

Query: 133 PDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAE 192
               D+ L +  G+ LA   +  EA+  Y RAL+L P    +  N+ +S + +G  K A 
Sbjct: 459 VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV 518

Query: 193 EKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEA--TRNIKYIKSILS 250
           + L  A  M        +       +   ++ A S  ++    +EA  +RN+  +K+  S
Sbjct: 519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAPSRNLSALKAEFS 578



 Score = 26.9 bits (59), Expect = 5.5
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 138 WQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSY 182
           WQ +   G   A+      A+    R LEL P     +  +A+SY
Sbjct: 322 WQKL---GITQAENENEQNAISALRRCLELDPTNLEALMALAVSY 363


>gnl|CDD|36371 KOG1156, KOG1156, KOG1156, N-terminal acetyltransferase [Chromatin
           structure and dynamics].
          Length = 700

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 6/147 (4%)

Query: 88  QALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSV 147
           + L +++Q+   +PE  E LA  G +L   G  +E  + +    R D+         G +
Sbjct: 25  KGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL 84

Query: 148 LAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSR 207
                K+ EA+  Y  AL++  +   I+ ++++  + M D +   E     +Q++     
Sbjct: 85  QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLET---RNQLLQLRPS 141

Query: 208 IRQN---LALVVGLQGRMKEAYSIASQ 231
            R +    A+   L G  K A  I  +
Sbjct: 142 QRASWIGFAVAQHLLGEYKMALEILEE 168


>gnl|CDD|37287 KOG2076, KOG2076, KOG2076, RNA polymerase III transcription factor
           TFIIIC [Transcription].
          Length = 895

 Score = 39.6 bits (92), Expect = 9e-04
 Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 1/128 (0%)

Query: 77  ADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIP 136
            ++  + G   +AL      A L P+D E+           G +++     +RA + +  
Sbjct: 180 GEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS 239

Query: 137 DWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLR 196
           +W+LI  + S+  + G    A+  + + L+L P    I     +   +     T  E+ R
Sbjct: 240 NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP-VDIERIEDLIRRVAHYFITHNERER 298

Query: 197 FASQMIGA 204
            A  + GA
Sbjct: 299 AAKALEGA 306



 Score = 31.5 bits (71), Expect = 0.28
 Identities = 18/73 (24%), Positives = 32/73 (43%)

Query: 137 DWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLR 196
           D++L      +  Q+G  ++A   Y RA++ +P+   ++   +  Y   GDLK A E   
Sbjct: 206 DYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFL 265

Query: 197 FASQMIGADSRIR 209
              Q+       R
Sbjct: 266 QLLQLDPPVDIER 278


>gnl|CDD|36389 KOG1174, KOG1174, KOG1174, Anaphase-promoting complex (APC),
           subunit 7 [Cell cycle control, cell division, chromosome
           partitioning, Posttranslational modification, protein
           turnover, chaperones].
          Length = 564

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 25/133 (18%), Positives = 54/133 (40%)

Query: 75  VYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPD 134
           +YA +L + G   Q  A+M  +             + + L +    +  L+ + +    +
Sbjct: 271 LYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE 330

Query: 135 IPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEK 194
             + + +  KG +L  + +H++A+I +  A  L+P    I   +  SYL     K A   
Sbjct: 331 PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANAL 390

Query: 195 LRFASQMIGADSR 207
             +  ++    +R
Sbjct: 391 ANWTIRLFQNSAR 403


>gnl|CDD|35767 KOG0547, KOG0547, KOG0547, Translocase of outer mitochondrial
           membrane complex, subunit TOM70/TOM72 [Intracellular
           trafficking, secretion, and vesicular transport].
          Length = 606

 Score = 37.3 bits (86), Expect = 0.005
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 144 KGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEE 193
           KG+   +  K+ EA+  Y +A+EL P+E    SN A  Y  +GD +   E
Sbjct: 121 KGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIE 170



 Score = 26.1 bits (57), Expect = 9.5
 Identities = 13/56 (23%), Positives = 26/56 (46%)

Query: 120 LDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIV 175
           +++  + + +A   D    Q          Q GK  EA+  +E++ +L+  ES +V
Sbjct: 519 INQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESEMV 574


>gnl|CDD|35773 KOG0553, KOG0553, KOG0553, TPR repeat-containing protein [General
           function prediction only].
          Length = 304

 Score = 35.8 bits (82), Expect = 0.012
 Identities = 21/85 (24%), Positives = 39/85 (45%)

Query: 141 ISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQ 200
           +  +G+ L +   + EA+ +Y  A+EL P  +    N A +Y  +G+ + A +    A  
Sbjct: 84  LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS 143

Query: 201 MIGADSRIRQNLALVVGLQGRMKEA 225
           +    S+    L L     G+ +EA
Sbjct: 144 IDPHYSKAYGRLGLAYLALGKYEEA 168



 Score = 30.4 bits (68), Expect = 0.55
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 15/116 (12%)

Query: 118 GYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSN 177
           G  ++ +     A   D    +     G     +GK+ EA+  Y++ALEL P+  S  SN
Sbjct: 129 GEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSN 188

Query: 178 IAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQEL 233
                     LK AE+KL    +   +            GL G   ++ S+ + +L
Sbjct: 189 ----------LKIAEQKLN---EPKSSAQASGSFDM--AGLIGAFPDSRSMFNGDL 229


>gnl|CDD|34394 COG4783, COG4783, Putative Zn-dependent protease, contains TPR
           repeats [General function prediction only].
          Length = 484

 Score = 35.7 bits (82), Expect = 0.015
 Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 23/133 (17%)

Query: 77  ADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRA--QRPD 134
            D+L    +  +A+  +++   L P    +     ++L   G   E +  +NR     P+
Sbjct: 347 GDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406

Query: 135 IPD-WQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEE 193
            P+ W L++   + L    +   A  E                     Y L G L+ A  
Sbjct: 407 DPNGWDLLAQAYAELGNRAEALLARAEG--------------------YALAGRLEQAII 446

Query: 194 KLRFASQMIGADS 206
            L  ASQ +    
Sbjct: 447 FLMRASQQVKLGF 459


>gnl|CDD|35843 KOG0624, KOG0624, KOG0624, dsRNA-activated protein kinase inhibitor
           P58, contains TPR and DnaJ domains [Defense mechanisms].
          Length = 504

 Score = 35.0 bits (80), Expect = 0.021
 Identities = 29/96 (30%), Positives = 41/96 (42%)

Query: 101 PEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIE 160
           P D E     GK L   G L + L   + A   D  ++Q I  + +V   MGK   AL +
Sbjct: 35  PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQD 94

Query: 161 YERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLR 196
             R LEL P+  +      +  L  G+L+ AE    
Sbjct: 95  LSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFD 130



 Score = 26.9 bits (59), Expect = 5.9
 Identities = 26/152 (17%), Positives = 61/152 (40%), Gaps = 16/152 (10%)

Query: 77  ADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYG------KSLANAGYLDEG---LDAI 127
           + +L  VG    +L  +R+   L P+ +     Y       KSL +A    E     + +
Sbjct: 230 SQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECL 289

Query: 128 NRAQR-----PDIPDWQLISAK--GSVLAQMGKHSEALIEYERALELSPNESSIVSNIAM 180
              ++     P+    +    +   +   +  +  EA+ + +  L++ P++  ++ + A 
Sbjct: 290 EAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAE 349

Query: 181 SYLLMGDLKTAEEKLRFASQMIGADSRIRQNL 212
           +YL       A      A ++  +++R R+ L
Sbjct: 350 AYLGDEMYDDAIHDYEKALELNESNTRAREGL 381


>gnl|CDD|37213 KOG2002, KOG2002, KOG2002, TPR-containing nuclear phosphoprotein
           that regulates K(+) uptake [Inorganic ion transport and
           metabolism].
          Length = 1018

 Score = 34.6 bits (79), Expect = 0.028
 Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 2/130 (1%)

Query: 88  QALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSV 147
           +AL +  +V    P++       G  LA  G   E  D  ++ +        +       
Sbjct: 630 KALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHC 689

Query: 148 LAQMGKHSEALIEYERALE--LSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD 205
             + G++  A+  YE  L+     N S ++  +A ++   G L+ A+E L  A  +  ++
Sbjct: 690 YVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSN 749

Query: 206 SRIRQNLALV 215
           + ++ NLALV
Sbjct: 750 TSVKFNLALV 759


>gnl|CDD|32877 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and
           secretion / Intracellular trafficking and secretion].
          Length = 250

 Score = 34.2 bits (78), Expect = 0.039
 Identities = 35/137 (25%), Positives = 52/137 (37%), Gaps = 6/137 (4%)

Query: 75  VYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPD 134
           V A   +++G    A    R+   L P + +VL  YG  L   G  +E +    RA    
Sbjct: 74  VRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERAL--A 131

Query: 135 IPDWQLISA----KGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKT 190
            P +   S      G    + G+  +A    +RALEL P     +  +A  +   GD   
Sbjct: 132 DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191

Query: 191 AEEKLRFASQMIGADSR 207
           A   L    Q  GA + 
Sbjct: 192 ARLYLERYQQRGGAQAE 208



 Score = 29.6 bits (66), Expect = 1.0
 Identities = 22/84 (26%), Positives = 36/84 (42%)

Query: 150 QMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIR 209
           Q G +++A    E+ALE  P+        A  Y  +G+   A+E  R A  +   +  + 
Sbjct: 47  QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVL 106

Query: 210 QNLALVVGLQGRMKEAYSIASQEL 233
            N    +  QGR +EA     + L
Sbjct: 107 NNYGAFLCAQGRPEEAMQQFERAL 130



 Score = 26.5 bits (58), Expect = 8.0
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 11/125 (8%)

Query: 118 GYLDEGLDAINR-------AQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPN 170
           GYL +G  A  +          P      L+ A      ++G++  A   Y +AL L+PN
Sbjct: 44  GYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRA--HYYQKLGENDLADESYRKALSLAPN 101

Query: 171 ESSIVSNIAMSYLLMGDLKTAEEKLRFASQ--MIGADSRIRQNLALVVGLQGRMKEAYSI 228
              +++N        G  + A ++   A      G  S   +NL L     G+  +A   
Sbjct: 102 NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEY 161

Query: 229 ASQEL 233
             + L
Sbjct: 162 LKRAL 166


>gnl|CDD|33959 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational
           modification, protein turnover, chaperones].
          Length = 287

 Score = 33.8 bits (77), Expect = 0.047
 Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 3/108 (2%)

Query: 87  AQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGS 146
              +A +       P D E     G++    G   + L A   A R    + +++     
Sbjct: 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAE 198

Query: 147 VL-AQMGKHSEALIE--YERALELSPNESSIVSNIAMSYLLMGDLKTA 191
            L  Q G+   A       +AL L P     +S +A +    GD   A
Sbjct: 199 ALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEA 246



 Score = 32.6 bits (74), Expect = 0.12
 Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 9/131 (6%)

Query: 130 AQRP-DIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDL 188
            Q P D   W L+   G     +G+ S+AL+ Y  AL L+ +   I+  +A +       
Sbjct: 150 QQNPGDAEGWDLL---GRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ 206

Query: 189 KT---AEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQ--ELSPEEATRNIK 243
           +    A   LR A  +  A+ R    LA     QG   EA +      +L P +  R   
Sbjct: 207 QMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSL 266

Query: 244 YIKSILSQRDP 254
             +SI      
Sbjct: 267 IERSIARALAQ 277


>gnl|CDD|37264 KOG2053, KOG2053, KOG2053, Mitochondrial inheritance and actin
           cytoskeleton organization protein [Cytoskeleton].
          Length = 932

 Score = 33.8 bits (77), Expect = 0.056
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 1/107 (0%)

Query: 83  VGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLIS 142
             +  +ALA + ++   +P           SL   G  DE L  +         D   + 
Sbjct: 22  SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQ 81

Query: 143 AKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLK 189
              +V   +GK  EA+  YERA +  P+E  ++ ++ M+Y+     K
Sbjct: 82  FLQNVYRDLGKLDEAVHLYERANQKYPSE-ELLYHLFMAYVREKSYK 127


>gnl|CDD|38270 KOG3060, KOG3060, KOG3060, Uncharacterized conserved protein
           [Function unknown].
          Length = 289

 Score = 33.8 bits (77), Expect = 0.057
 Identities = 32/151 (21%), Positives = 60/151 (39%), Gaps = 11/151 (7%)

Query: 48  NHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRV-------GRTAQALAVMRQVAILY 100
           N E++++    +G +  +++K+  +G     +  +V       GR   A   + Q+   +
Sbjct: 27  NSEEVVQ----LGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF 82

Query: 101 PEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIE 160
           P  + V       L   G   E ++        D  D  +   K ++L   GK+ EA+ E
Sbjct: 83  PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKE 142

Query: 161 YERALELSPNESSIVSNIAMSYLLMGDLKTA 191
               L+   N+      +A  YL  GD + A
Sbjct: 143 LNEYLDKFMNDQEAWHELAEIYLSEGDFEKA 173


>gnl|CDD|34549 COG4941, COG4941, Predicted RNA polymerase sigma factor containing
           a TPR repeat domain [Transcription].
          Length = 415

 Score = 33.0 bits (75), Expect = 0.096
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 121 DEGLDAINRA-QRPDIPDWQLI-SAKGSVLAQMGKHSEALIEYERALELSPNES 172
             GL  +     RP +  + L  +A+  +LA++G+  EA   Y+RA+ L+ N +
Sbjct: 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399


>gnl|CDD|176974 CHL00033, ycf3, photosystem I assembly protein Ycf3.
          Length = 168

 Score = 32.3 bits (74), Expect = 0.14
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 7/56 (12%)

Query: 145 GSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSY-------LLMGDLKTAEE 193
           G +    G+H++AL  Y +ALE +P     ++N+A+         +  GD + AE 
Sbjct: 79  GLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEA 134


>gnl|CDD|39841 KOG4642, KOG4642, KOG4642, Chaperone-dependent E3 ubiquitin protein
           ligase (contains TPR repeats) [Posttranslational
           modification, protein turnover, chaperones].
          Length = 284

 Score = 32.3 bits (73), Expect = 0.16
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 153 KHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNL 212
           ++ +A+  Y RA+ ++P  +S  +N A+ +L +   +  EE  R A Q+     +    L
Sbjct: 25  RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFL 84

Query: 213 ALVVGLQGRMKEAYSIASQELS 234
               G      + Y  A + L 
Sbjct: 85  ----GQWLLQSKGYDEAIKVLQ 102


>gnl|CDD|144197 pfam00515, TPR_1, Tetratricopeptide repeat. 
          Length = 34

 Score = 32.0 bits (74), Expect = 0.18
 Identities = 13/27 (48%), Positives = 20/27 (74%)

Query: 144 KGSVLAQMGKHSEALIEYERALELSPN 170
            G+   ++GK+ EA+  YE+ALEL+PN
Sbjct: 7   LGNAYFKLGKYDEAIEYYEKALELNPN 33


>gnl|CDD|35763 KOG0543, KOG0543, KOG0543, FKBP-type peptidyl-prolyl cis-trans
           isomerase [Posttranslational modification, protein
           turnover, chaperones].
          Length = 397

 Score = 31.5 bits (71), Expect = 0.24
 Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 147 VLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADS 206
              ++ ++ EA+    + LEL PN    +     + L +G+   A +  + A ++  ++ 
Sbjct: 266 CYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK 325

Query: 207 RIRQNLALVVGLQGRMKEAYS 227
             R  L     L+ +++E   
Sbjct: 326 AARAELIK---LKQKIREYEE 343


>gnl|CDD|35768 KOG0548, KOG0548, KOG0548, Molecular co-chaperone STI1
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 539

 Score = 31.5 bits (71), Expect = 0.25
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 143 AKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTA 191
            KG+   + G + EA+  Y  A++  P ++ + SN A  YL +G+   A
Sbjct: 363 EKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEA 411


>gnl|CDD|39847 KOG4648, KOG4648, KOG4648, Uncharacterized conserved protein,
           contains LRR repeats [Function unknown].
          Length = 536

 Score = 31.3 bits (70), Expect = 0.29
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 141 ISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEE 193
           I  +G+   + GK+ EA+  Y  A+ + P+      N A++YL       AEE
Sbjct: 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEE 152


>gnl|CDD|37051 KOG1840, KOG1840, KOG1840, Kinesin light chain [Cytoskeleton].
          Length = 508

 Score = 31.1 bits (70), Expect = 0.34
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 9/116 (7%)

Query: 95  QVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQ-LISAKGSVLAQMGK 153
            VA        +    GK      Y +  L+   +      P+    +S   ++L  M +
Sbjct: 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE 340

Query: 154 HSEALIEYERALEL--------SPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQM 201
           + EA    ++AL++        + N + I +N+A  YL MG  K AEE  + A Q+
Sbjct: 341 YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396


>gnl|CDD|36343 KOG1128, KOG1128, KOG1128, Uncharacterized conserved protein,
           contains TPR repeats [General function prediction only].
          Length = 777

 Score = 30.8 bits (69), Expect = 0.42
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 143 AKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFA 198
             G    Q+ K   A+  + R + L P+ +   +N++ +Y+ +   K A  KL+ A
Sbjct: 524 GLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579



 Score = 26.9 bits (59), Expect = 5.6
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 135 IPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEK 194
            P WQL      +L  +G    AL+ +ER LE+          + + YLL+G    AEE 
Sbjct: 395 PPIWQLQRLLAELLLSLGITKSALVIFER-LEM-------WDPVILCYLLLGQHGKAEEI 446

Query: 195 LR 196
            R
Sbjct: 447 NR 448


>gnl|CDD|38989 KOG3785, KOG3785, KOG3785, Uncharacterized conserved protein
           [Function unknown].
          Length = 557

 Score = 30.0 bits (67), Expect = 0.82
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 157 ALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVV 216
           +L+E++  L+    E S+   IA  Y  +GD + A     F      A + +  NLA   
Sbjct: 43  SLLEFKLNLD-REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCK 101

Query: 217 GLQGRMKEAYSIASQ 231
              G+  EA SIA +
Sbjct: 102 FYLGQYIEAKSIAEK 116


>gnl|CDD|34316 COG4700, COG4700, Uncharacterized protein conserved in bacteria
           containing a divergent form of TPR repeats [Function
           unknown].
          Length = 251

 Score = 29.6 bits (66), Expect = 1.0
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 74  IVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRP 133
           +++A  L   G+ A A +        YP   +    Y + LA  G L E       AQ  
Sbjct: 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREA-----NAQYV 217

Query: 134 DIPDWQLISAK 144
            + D    S  
Sbjct: 218 AVVDTAKRSRP 228



 Score = 26.9 bits (59), Expect = 6.8
 Identities = 35/195 (17%), Positives = 76/195 (38%), Gaps = 35/195 (17%)

Query: 96  VAILYPE------DQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLA 149
           VA++ PE         +L A  + L    +L E  + +  A     P  Q      + LA
Sbjct: 46  VAVMLPELGADRHAHTLLMALQQKLDPERHLREATEELAIA-----PTVQNRYRLANALA 100

Query: 150 QMGKHSEALIEYERALE-LSPNESSIVSNIAMSYLLMGDLKTAEEKL----------RFA 198
           ++G++ EA+  Y++AL  +  ++++++  +A +   + +   A++ L          R  
Sbjct: 101 ELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160

Query: 199 SQMI-------------GADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYI 245
              +              A+S     ++   G Q R+  A  +A Q    E   + +  +
Sbjct: 161 DGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220

Query: 246 KSILSQRDPWKKIAK 260
            +    R  ++K  +
Sbjct: 221 DTAKRSRPHYRKHHR 235


>gnl|CDD|48214 cd03402, Band_7_2, A subgroup of the band 7 domain of flotillin
           (reggie) like proteins. This subgroup contains proteins
           similar to stomatin, prohibitin, flotillin, HlfK/C and
           podicin.  Many of these band 7 domain-containing
           proteins are lipid raft-associated.  Individual proteins
           of this band 7 domain family may cluster to form
           membrane microdomains which may in turn recruit
           multiprotein complexes.  Microdomains formed from
           flotillin proteins may in addition be dynamic units with
           their own regulatory functions.  Flotillins have been
           implicated in signal transduction, vesicle trafficking,
           cytoskeleton rearrangement and are known to interact
           with a variety of proteins.  Stomatin interacts with and
           regulates members of the degenerin/epithelia Na+ channel
           family in mechanosensory cells of Caenorhabditis elegans
           and vertebrate neurons and participates in trafficking
           of Glut1 glucose transporters. Prohibitin may act as a
           chaperone for the stabilization of mitochondrial
           proteins.  Prokaryotic HflK/C plays a role in the
           decision between lysogenic and lytic cycle growth during
           lambda phage infection. Flotillins have been implicated
           in the progression of prion disease, in the pathogenesis
           of neurodegenerative diseases such as Parkinson's and
           Alzheimer's disease and, in cancer invasion and
           metastasis. Mutations in the podicin gene give rise to
           autosomal recessive steroid resistant nephritic
           syndrome..
          Length = 219

 Score = 29.5 bits (66), Expect = 1.1
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 88  QALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINR--AQRPDIPDWQLISAKG 145
           Q+ + +R VA  YP D  V     K  +  G  DE  D + R   +R  +   +++ A+ 
Sbjct: 92  QSESALRHVASQYPYDDPV----NKETSLRGNSDEVSDELARELQERLAVAGVEVVEARI 147

Query: 146 SVLAQMGKHSEALIEYERALELSPNESSIVSN 177
           + LA   + ++A+++ ++A  +      IV  
Sbjct: 148 THLAYAPEIAQAMLQRQQASAIIAARRKIVEG 179


>gnl|CDD|32795 COG2976, COG2976, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 207

 Score = 29.5 bits (66), Expect = 1.1
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 84  GRTAQALAVMRQVAILYPEDQEVLAA----YGKSLANAGYLDEGLDAINRAQRPDIPDWQ 139
               +A A ++Q A+   +D+ + A       +        D  L  ++  +      W 
Sbjct: 103 NNLDKAEAQLKQ-ALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES---WA 158

Query: 140 LISA--KGSVLAQMGKHSEALIEYERALELSPNESS 173
            I A  +G +L   G   EA   YE+ALE   + ++
Sbjct: 159 AIVAELRGDILLAKGDKQEARAAYEKALESDASPAA 194


>gnl|CDD|35559 KOG0338, KOG0338, KOG0338, ATP-dependent RNA helicase [RNA
           processing and modification].
          Length = 691

 Score = 28.4 bits (63), Expect = 2.0
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 80  LRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQ 139
           L RVGRTA+A    R V ++   D+++L    KS   AG         NR         +
Sbjct: 511 LHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKAGS-----KLKNR-----NIPPE 560

Query: 140 LISAKGSVLAQMGKHSEALIEYERA-LELSPNESSI 174
           +I      + +M    +A+++ ER   ELS  E+ +
Sbjct: 561 VIEKFRKKIEEMEDTIQAVLDEEREEKELSKAEAQL 596


>gnl|CDD|37214 KOG2003, KOG2003, KOG2003, TPR repeat-containing protein [General
           function prediction only].
          Length = 840

 Score = 28.5 bits (63), Expect = 2.1
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 145 GSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQ 200
           G    Q G++ +A+  ++  +E +PN  + + N+ +    +GD     EK++ A Q
Sbjct: 283 GVTFIQAGQYDDAINSFDHCMEEAPNFIAAL-NLIICAFAIGD----AEKMKEAFQ 333


>gnl|CDD|36370 KOG1155, KOG1155, KOG1155, Anaphase-promoting complex (APC), Cdc23
           subunit [Cell cycle control, cell division, chromosome
           partitioning, Posttranslational modification, protein
           turnover, chaperones].
          Length = 559

 Score = 27.6 bits (61), Expect = 3.3
 Identities = 16/56 (28%), Positives = 29/56 (51%)

Query: 152 GKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSR 207
            +H +A++ ++RAL+L+P   S  + +   Y+ M +   A E  R A  +   D R
Sbjct: 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR 399



 Score = 26.5 bits (58), Expect = 7.4
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query: 137 DWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTA 191
           D +L  A G    ++ +  EA+  Y+RA+ L   E S +  +A  Y  + DL  A
Sbjct: 431 DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485


>gnl|CDD|30666 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
           II [Lipid metabolism / Secondary metabolites
           biosynthesis, transport, and catabolism].
          Length = 534

 Score = 27.8 bits (61), Expect = 3.5
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 9/84 (10%)

Query: 32  LNPRISIPDPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQALA 91
            N  + +    +L ++             L +          + Y ++ RR  R A AL 
Sbjct: 1   ANRLMRMTAELTLASLLERAARRNPDRPALIFLGRGGR----LTYRELDRRANRLAAALQ 56

Query: 92  VMR-----QVAILYPEDQEVLAAY 110
            +      +VAIL P   E L A+
Sbjct: 57  ALGVKPGDRVAILLPNSPEFLIAF 80


>gnl|CDD|32484 COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase
           superfamily) [General function prediction only].
          Length = 293

 Score = 27.2 bits (60), Expect = 4.4
 Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 21/110 (19%)

Query: 89  ALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVL 148
              V++ + +      E+    G    +   L +    +   +  D   WQ       VL
Sbjct: 107 LDEVLKTIKV-----PELWIYAGSDSTSTFVLRDAGIPVRSCKAGDS--WQWGGVVFQVL 159

Query: 149 AQMGKHSEALIEYERALELSPNESSIVSNIA---MSYLLMGDLKTAEEKL 195
           + +G  S+ L           N  S V  +     S+LL GDL+   EKL
Sbjct: 160 SPVGGVSDDL-----------NNDSCVLRVTFGGNSFLLTGDLEEKGEKL 198


>gnl|CDD|112637 pfam03833, PolC_DP2, DNA polymerase II large subunit DP2. 
          Length = 852

 Score = 27.0 bits (60), Expect = 5.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 68  KNKMIGIVYADVLRRVGRTAQALAVM 93
            ++ + + YA  +R  G TAQAL+V+
Sbjct: 125 GSEYLAVYYAGPIRSAGGTAQALSVL 150


>gnl|CDD|176995 CHL00054, psaB, photosystem I P700 chlorophyll a apoprotein A2.
          Length = 734

 Score = 26.6 bits (59), Expect = 7.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 135 IPDWQLISAKGSVLAQMGKHSEALI 159
           I D+     + +VLA+M  H EA+I
Sbjct: 395 IRDYNPEQNEDNVLARMLDHKEAII 419


>gnl|CDD|107214 cd06457, M3A_MIP, Peptidase M3 mitochondrial intermediate peptidase
           (MIP; EC 3.4.24.59) belongs to the widespread subfamily
           M3A, that show similarity to the Thimet oligopeptidase
           (TOP). It is one of three peptidases responsible for the
           proteolytic processing of both, nuclear and
           mitochondrial encoded precursor polypeptides targeted to
           the various subcompartments of the mitochondria. It
           cleaves intermediate-size proteins initially processed
           by mitochondrial processing peptidase (MPP) to yield a
           processing intermediate with a typical N-terminal
           octapeptide that is sequentially cleaved by MIP to
           mature-size protein.  MIP cleaves precursor proteins of
           respiratory components, including subunits of the
           electron transport chain and tri-carboxylic acid cycle
           enzymes, and components of the mitochondrial genetic
           machinery, including ribosomal proteins, translation
           factors, and proteins required for mitochondrial DNA
           metabolism. It has been suggested that the human MIP
           (HMIP polypeptide; gene symbol MIPEP) may be one of the
           loci predicted to influence the clinical manifestations
           of Friedreich's ataxia (FRDA), an autosomal recessive
           neurodegenerative disease caused by lack of human
           frataxin. These proteins are enriched in cysteine
           residues, two of which are highly conserved, suggesting
           their importance to stability as well as in formation of
           metal binding sites, thus playing a role in MIP
           activity.
          Length = 458

 Score = 26.5 bits (59), Expect = 8.6
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 66  HTKNKMIGIVYADVLRRVGRTAQA 89
           H    ++G++Y D+  R G+   A
Sbjct: 173 HEDEGLLGVIYCDLFSRPGKPPGA 196


>gnl|CDD|38809 KOG3603, KOG3603, KOG3603, Predicted phospholipase D [General
           function prediction only].
          Length = 456

 Score = 26.5 bits (58), Expect = 8.6
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 231 QELSPEEATRNIKYIKSILSQRDPWKKIAKARSNHNK 267
           Q+LS      +I+ +K  +  +   +KI  AR NHNK
Sbjct: 350 QDLSDPLENGSIQ-VKFFIVPQTNIEKIPFARVNHNK 385


>gnl|CDD|177254 MTH00211, ND5, NADH dehydrogenase subunit 5; Provisional.
          Length = 597

 Score = 26.5 bits (59), Expect = 8.9
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 10/43 (23%)

Query: 1  MIILFCPVILFLK----------KIKCIVFLIPLLLFSSCHLN 33
          +I+L  P++L L           K+   + LIPLL+F    L 
Sbjct: 13 LILLLLPLLLPLNNSKLHIKKAVKLSFFISLIPLLIFLDQGLE 55


>gnl|CDD|35569 KOG0348, KOG0348, KOG0348, ATP-dependent RNA helicase [RNA
           processing and modification].
          Length = 708

 Score = 26.1 bits (57), Expect = 9.3
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 77  ADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLAN--AGYLDEGLDAIN-RAQRP 133
           AD L RVGRTA+A      +  L P + E +    K         ++  L A   R  + 
Sbjct: 529 ADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHIMLLQFDMEILLPAFKPRKDKA 588

Query: 134 DIPDWQ 139
              +WQ
Sbjct: 589 KTKEWQ 594


>gnl|CDD|34582 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat)
           [General function prediction only].
          Length = 287

 Score = 26.1 bits (57), Expect = 9.9
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 148 LAQMGKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSR 207
           LA+ G    A   Y +ALEL+P  ++    +       G+   A        +++  D  
Sbjct: 5   LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYE---EVLELDPE 61

Query: 208 IRQNLALVVGLQGR 221
                AL + + GR
Sbjct: 62  DHGGAALKLAVLGR 75


>gnl|CDD|36344 KOG1129, KOG1129, KOG1129, TPR repeat-containing protein [General
           function prediction only].
          Length = 478

 Score = 26.2 bits (57), Expect = 10.0
 Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 2/119 (1%)

Query: 64  QSHTKNKMIG--IVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLD 121
            S T+       ++ + V +R+ +  +AL V+ +    +P D   L    +        +
Sbjct: 248 SSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE 307

Query: 122 EGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAM 180
           + L       +    + + I+              AL  Y R L++      +  NI +
Sbjct: 308 DALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGL 366


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,116,206
Number of extensions: 158778
Number of successful extensions: 530
Number of sequences better than 10.0: 1
Number of HSP's gapped: 518
Number of HSP's successfully gapped: 82
Length of query: 271
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 179
Effective length of database: 4,275,709
Effective search space: 765351911
Effective search space used: 765351911
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)