BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780592|ref|YP_003065005.1| TPR repeat-containing protein
[Candidatus Liberibacter asiaticus str. psy62]
         (271 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780592|ref|YP_003065005.1| TPR repeat-containing protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 271

 Score =  556 bits (1432), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 271/271 (100%), Positives = 271/271 (100%)

Query: 1   MIILFCPVILFLKKIKCIVFLIPLLLFSSCHLNPRISIPDPESLENMNHEQLLEVTSTIG 60
           MIILFCPVILFLKKIKCIVFLIPLLLFSSCHLNPRISIPDPESLENMNHEQLLEVTSTIG
Sbjct: 1   MIILFCPVILFLKKIKCIVFLIPLLLFSSCHLNPRISIPDPESLENMNHEQLLEVTSTIG 60

Query: 61  LQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYL 120
           LQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYL
Sbjct: 61  LQYQSHTKNKMIGIVYADVLRRVGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYL 120

Query: 121 DEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAM 180
           DEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAM
Sbjct: 121 DEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAM 180

Query: 181 SYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATR 240
           SYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATR
Sbjct: 181 SYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATR 240

Query: 241 NIKYIKSILSQRDPWKKIAKARSNHNKKERA 271
           NIKYIKSILSQRDPWKKIAKARSNHNKKERA
Sbjct: 241 NIKYIKSILSQRDPWKKIAKARSNHNKKERA 271


>gi|254780436|ref|YP_003064849.1| hypothetical protein CLIBASIA_01605 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 298

 Score = 33.5 bits (75), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 122 EGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMS 181
           + L A+ RA   D   + +   +G V    G   +AL++++ AL+L+P    + +N A+ 
Sbjct: 56  DSLTAVIRAHPSDPEGYNV---RGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALI 112

Query: 182 YLLMGDLKTA 191
              MGD+  A
Sbjct: 113 RYKMGDVPMA 122


>gi|254780622|ref|YP_003065035.1| bifunctional phosphopantothenoylcysteine
           decarboxylase/phosphopantothenate synthase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 405

 Score = 25.4 bits (54), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 83  VGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLD 125
           VGR ++   ++RQ+  L  + +E+L    ++L  +G   E LD
Sbjct: 165 VGRMSEPCDIIRQITWLLYKSKELLLKGKRALVTSGPTYEPLD 207


>gi|254780860|ref|YP_003065273.1| NADH dehydrogenase subunit H [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 348

 Score = 24.3 bits (51), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 4  LFCPVILFLKKIKCIVFLIPLLLF 27
           F P  LF   IK IVFL+ LL+F
Sbjct: 8  FFVP--LFFMAIKSIVFLVGLLIF 29


>gi|254780371|ref|YP_003064784.1| diaminopimelate decarboxylase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 431

 Score = 23.9 bits (50), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 75  VYADVLRRVGRTAQALAVMRQVAILYPEDQ---EVLAAYG 111
           ++AD++  +  T   +A+ R++A+  P D    E   AYG
Sbjct: 336 IHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYG 375


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.133    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,325
Number of Sequences: 1233
Number of extensions: 5802
Number of successful extensions: 20
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 7
length of query: 271
length of database: 328,796
effective HSP length: 73
effective length of query: 198
effective length of database: 238,787
effective search space: 47279826
effective search space used: 47279826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 37 (18.9 bits)