Query gi|254780593|ref|YP_003065006.1| undecaprenyl pyrophosphate phosphatase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 266
No_of_seqs 122 out of 2822
Neff 6.3
Searched_HMMs 39220
Date Sun May 29 22:53:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780593.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12554 undecaprenyl pyrophos 100.0 0 0 550.2 27.4 260 4-264 1-271 (277)
2 PRK00281 undecaprenyl pyrophos 100.0 0 0 542.2 27.4 260 2-265 1-267 (268)
3 COG1968 BacA Undecaprenyl pyro 100.0 0 0 539.8 27.3 264 1-265 1-269 (270)
4 pfam02673 BacA Bacitracin resi 100.0 0 0 525.1 23.4 248 8-258 1-254 (255)
5 TIGR00753 undec_kin_bacA undec 100.0 0 0 353.8 19.1 248 9-256 1-269 (269)
6 pfam01925 TauE Sulfite exporte 96.7 0.048 1.2E-06 32.4 19.2 166 7-195 3-177 (236)
7 PRK12554 undecaprenyl pyrophos 94.6 0.35 9E-06 26.8 12.0 16 44-59 87-102 (277)
8 COG1968 BacA Undecaprenyl pyro 93.9 0.5 1.3E-05 25.8 11.8 42 2-43 145-186 (270)
9 COG0730 Predicted permeases [G 88.2 1.9 4.8E-05 22.1 19.5 234 1-259 2-250 (258)
10 pfam04018 DUF368 Domain of unk 84.8 2.8 7.2E-05 20.9 12.7 33 141-173 134-167 (250)
11 smart00195 DSPc Dual specifici 74.5 2.6 6.7E-05 21.1 2.5 27 160-186 86-114 (138)
12 TIGR01946 rnfD electron transp 72.8 5.5 0.00014 19.1 3.8 153 82-259 88-251 (346)
13 cd00127 DSPc Dual specificity 70.3 4.1 0.00011 19.9 2.7 27 160-186 89-117 (139)
14 COG2453 CDC14 Predicted protei 68.6 3.9 9.9E-05 20.0 2.3 34 159-192 112-147 (180)
15 TIGR01129 secD protein-export 66.0 9.2 0.00024 17.6 5.3 69 165-237 454-522 (522)
16 PRK10483 tryptophan permease; 63.9 10 0.00026 17.4 9.6 15 86-100 194-208 (414)
17 PRK10621 hypothetical protein; 59.8 12 0.0003 16.9 19.8 196 24-239 31-233 (269)
18 pfam00782 DSPc Dual specificit 56.8 10 0.00027 17.3 2.7 26 161-186 80-107 (131)
19 pfam02293 AmiS_UreI AmiS/UreI 55.0 14 0.00036 16.4 10.4 28 172-199 76-103 (166)
20 COG0341 SecF Preprotein transl 48.2 18 0.00047 15.7 9.2 131 79-242 157-291 (305)
21 PRK05812 secD preprotein trans 47.1 19 0.00048 15.6 6.8 32 211-242 472-503 (513)
22 COG2035 Predicted membrane pro 43.7 21 0.00055 15.3 23.1 161 3-175 1-177 (276)
23 PRK10746 putative transport pr 42.7 22 0.00056 15.2 6.5 18 11-28 56-76 (461)
24 TIGR00732 dprA DNA protecting 38.0 7.7 0.0002 18.1 -0.4 42 142-183 159-200 (238)
25 TIGR02697 WPE_wolbac Wolbachia 34.7 11 0.00029 17.0 0.1 11 18-28 34-44 (46)
26 COG1055 ArsB Na+/H+ antiporter 32.8 32 0.00081 14.2 7.7 57 115-174 250-307 (424)
27 COG0733 Na+-dependent transpor 32.7 32 0.00081 14.2 8.3 81 176-259 335-421 (439)
28 smart00352 POU Found in Pit-Oc 32.3 32 0.00082 14.1 3.6 43 142-187 22-64 (75)
29 pfam03209 PUCC PUCC protein. T 30.2 35 0.00088 13.9 1.9 69 81-149 130-201 (402)
30 pfam02588 DUF161 Uncharacteriz 29.3 36 0.00092 13.8 3.5 56 146-201 7-62 (80)
31 PRK09664 tryptophan permease T 28.3 38 0.00096 13.7 8.4 17 86-102 195-211 (415)
32 PRK00816 rnfD electron transpo 25.4 42 0.0011 13.4 5.4 48 82-130 94-141 (351)
33 PRK10655 potE putrescine trans 24.8 43 0.0011 13.3 8.2 15 13-27 105-119 (438)
34 pfam01654 Bac_Ubq_Cox Bacteria 24.1 45 0.0011 13.2 5.4 52 113-167 179-230 (430)
35 CHL00190 psaM photosystem I su 23.5 46 0.0012 13.1 3.4 21 215-235 4-24 (30)
36 PRK11562 nitrite transporter N 23.1 47 0.0012 13.1 1.7 46 146-191 155-208 (268)
37 PRK10452 multidrug efflux syst 23.1 47 0.0012 13.1 4.0 52 79-134 58-109 (120)
38 PRK12417 secY preprotein trans 21.5 50 0.0013 12.9 5.2 31 232-262 266-296 (399)
39 TIGR00727 ISP4_OPT small oligo 21.4 28 0.00072 14.5 0.1 108 110-241 454-565 (716)
40 KOG3988 consensus 20.5 35 0.00088 13.9 0.4 65 159-232 74-148 (378)
41 PRK08383 putative monovalent c 20.5 53 0.0013 12.7 3.6 17 147-163 106-122 (167)
No 1
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=100.00 E-value=0 Score=550.17 Aligned_cols=260 Identities=35% Similarity=0.571 Sum_probs=239.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
Q ss_conf 1389999999987565310207426899999982868--102899999984887899999998899986134--------
Q gi|254780593|r 4 YSIIIALILGVVEGVTEFIPVSSTAHLLLVSRLLGAD--LGSSFIVLVQLGAVSALLYVYFGRILSIFVSFP-------- 73 (266)
Q Consensus 4 m~~~~aiilgiiQGiTEfLPISSsgHl~l~~~ll~~~--~~~~f~v~lhlGtl~Avl~~f~~~i~~~~~~~~-------- 73 (266)
||++|++++|+|||+|||||||||||++++++++|++ ++.+||+++|+||++|+++|||||++++.++..
T Consensus 1 M~~l~aiiLgiiQGiTEFLPISSsGHL~l~~~llg~~~~~~~~f~v~lh~GtllAvl~~fr~di~~l~~~~~~~~~~~~~ 80 (277)
T PRK12554 1 MSLLKAIILGLVQGLTEFLPVSSSGHLILVGALLGFHIDEGLAFEVIIQLGTLLAVLWYYRDDIIRLIKNFFASLTGRVE 80 (277)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 96899999999987346706675689999999968997643499999999999999999999999999988876302433
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 68000022799889876531125542344420145783100245556889999999632002444333202445477889
Q gi|254780593|r 74 FSAAARHFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITLIIGGFILLLVDRLKFESKYFHIENYPIPLAIKIGL 153 (266)
Q Consensus 74 ~~~~~~~~~~~iiiatiP~~iiG~~~~~~i~~~~~~~~~~i~~~lii~gilL~~~d~~~~~~~~~~~~~~~~~~a~~IGl 153 (266)
.+++++|+.+++++||+|++++|+++++.+++. ++++..++.+++++|++|+++|+++++++.++.+|+|++||++||+
T Consensus 81 ~~~~~~~l~~~liiatiP~~iiG~~~~~~i~~~-~~~~~~ia~~lii~gilL~~ad~~~~~~~~~~~~~i~~~~A~~IG~ 159 (277)
T PRK12554 81 DKKSDFRFGWYLIIATIPAGVIGLLFKDRIEEV-LFDLRIVAIALIVTGVLLWIADNLRRSRGRKNDEDLTFKDAIIVGL 159 (277)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHH
T ss_conf 466457999999999998999999999999999-6376999999999999999999975045778742188999999999
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHH
Q ss_conf 98744210356888999999972688899999999999999999998632211110000-00499999999999999999
Q gi|254780593|r 154 FQCIAMIPGTSRSGATITGALILGADKRSAAEFSFFIAIPTIIGACVLDFYKNYNVIVN-NIGKEIIIGFMASFITSLLV 232 (266)
Q Consensus 154 ~Q~lAliPGiSRSG~TI~~~l~lG~~r~~A~~fSFllsiP~i~gA~~l~~~~~~~~~~~-~~~~~~~ig~~~sfi~~~~~ 232 (266)
+||+|++||+||||+||++|+++|+||++|+||||+|++|+|+||+++|.+|..+.... ....++++|+++||++||++
T Consensus 160 ~Q~lAliPGvSRSG~TI~~~l~~G~~r~~Aa~fSFLLsiP~i~ga~~l~~~~~~~~~~~~~~~~~~lig~i~sfi~~~~s 239 (277)
T PRK12554 160 AQALALIPGISRSGATIIAGMLLGLTREAAARFSFLLAIPVSLGAGVLELPKIFHDPDLGSLLIPYALAFIAAFIAAYLS 239 (277)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99954678756365899999995999999999999999999999999999998722440668999999999999999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999818870147668999999999986
Q gi|254780593|r 233 IRSLFQVIAKRGYTPFALWRILIGFVGLFLEI 264 (266)
Q Consensus 233 i~~ll~~~~~~~l~~F~~Yri~lG~~~l~~~~ 264 (266)
+||++|+++|++|.||+|||+++|.+++.+..
T Consensus 240 i~~ll~~l~~~~~~~F~~Yri~lG~~~l~~~~ 271 (277)
T PRK12554 240 VRWFMRFMAKGSLAYFAWYCIILGVLLLILLM 271 (277)
T ss_pred HHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHH
T ss_conf 99999999878981279999999999999999
No 2
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=100.00 E-value=0 Score=542.22 Aligned_cols=260 Identities=38% Similarity=0.684 Sum_probs=240.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CC
Q ss_conf 53138999999998756531020742689999998286-810289999998488789999999889998613------46
Q gi|254780593|r 2 LRYSIIIALILGVVEGVTEFIPVSSTAHLLLVSRLLGA-DLGSSFIVLVQLGAVSALLYVYFGRILSIFVSF------PF 74 (266)
Q Consensus 2 ~~m~~~~aiilgiiQGiTEfLPISSsgHl~l~~~ll~~-~~~~~f~v~lhlGtl~Avl~~f~~~i~~~~~~~------~~ 74 (266)
.+||++|++++|+|||+|||||||||||++++++++++ |++.+||+++|+||++|+++|||||++++..+. +.
T Consensus 1 ~mm~~l~aiiLgiiQGiTEFLPISSSgHL~l~~~l~~~~~~~~~f~i~lH~GTl~Avl~~frkdi~~l~~~~~~~~~~~~ 80 (268)
T PRK00281 1 DMMDLLKAIILGIVEGLTEFLPISSTGHLILVGHLLGGGDFAKSFDVVIQLGAILAVVVYFRKRLLRLLKGWFGSIGGRG 80 (268)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 96789999999999873467067867899999998589962179999999999999999999999999999876402445
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 80000227998898765311255423444201457831002455568899999996320024443332024454778899
Q gi|254780593|r 75 SAAARHFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITLIIGGFILLLVDRLKFESKYFHIENYPIPLAIKIGLF 154 (266)
Q Consensus 75 ~~~~~~~~~~iiiatiP~~iiG~~~~~~i~~~~~~~~~~i~~~lii~gilL~~~d~~~~~~~~~~~~~~~~~~a~~IGl~ 154 (266)
+++++++.+++++||+|++++|+++++++++. .+++..++.+++++|++++++|+++++ ++.+|+|++||++||++
T Consensus 81 ~~~~~~l~~~iiiatiP~~iiG~~~~~~i~~~-~~~~~~i~~~lii~gilL~~~d~~~~~---~~~~~l~~~~a~~IGl~ 156 (268)
T PRK00281 81 RSEDRRLLLLVIVATIPAVVLGLLFKDFIEEH-LFSPWVVAIALIVGGILLIWAEKRKKV---KDLDDLTYKDALLIGLA 156 (268)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHCCHHHHHHHHHH
T ss_conf 75558999999999737999999999989998-348799999999999999999984267---98565999999999999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87442103568889999999726888999999999999999999986322111100000049999999999999999999
Q gi|254780593|r 155 QCIAMIPGTSRSGATITGALILGADKRSAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEIIIGFMASFITSLLVIR 234 (266)
Q Consensus 155 Q~lAliPGiSRSG~TI~~~l~lG~~r~~A~~fSFllsiP~i~gA~~l~~~~~~~~~~~~~~~~~~ig~~~sfi~~~~~i~ 234 (266)
||+|++||+||||+||+++|++|+|||+|+||||+|++|+++||++++..|...........++++|+++||++||+++|
T Consensus 157 Q~lAliPGiSRSG~TI~a~l~lG~~r~~A~rfSFllsIP~ilga~~~~~~~~~~~~~~~~~~~~lig~~~sfi~~~~sI~ 236 (268)
T PRK00281 157 QCLALIPGTSRSGATISGGLLLGLSREAAAEFSFLLAIPAMLGASLLDLLKSGGVLSAADIPALAVGFVVAFVVALIAIK 236 (268)
T ss_pred HHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99336787564569999999949988999999999999999999999999975115455699999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999998188701476689999999999867
Q gi|254780593|r 235 SLFQVIAKRGYTPFALWRILIGFVGLFLEIF 265 (266)
Q Consensus 235 ~ll~~~~~~~l~~F~~Yri~lG~~~l~~~~~ 265 (266)
|++|++||++++||++||+++|.+++.+.+.
T Consensus 237 ~ll~~~~~~~~~~F~iYri~lG~~~l~~~~~ 267 (268)
T PRK00281 237 WLLKYIKRHSFTPFAIYRIVLGALLLALLFL 267 (268)
T ss_pred HHHHHHHHCCCEEHHHHHHHHHHHHHHHHHC
T ss_conf 9999998889812799999999999999980
No 3
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=100.00 E-value=0 Score=539.81 Aligned_cols=264 Identities=39% Similarity=0.740 Sum_probs=246.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCH
Q ss_conf 9531389999999987565310207426899999982868-1028999999848878999999988999861--346800
Q gi|254780593|r 1 MLRYSIIIALILGVVEGVTEFIPVSSTAHLLLVSRLLGAD-LGSSFIVLVQLGAVSALLYVYFGRILSIFVS--FPFSAA 77 (266)
Q Consensus 1 m~~m~~~~aiilgiiQGiTEfLPISSsgHl~l~~~ll~~~-~~~~f~v~lhlGtl~Avl~~f~~~i~~~~~~--~~~~~~ 77 (266)
|..|++++|+++|+|||+|||||||||||+++++++++++ ++.+|++++|+||++|+++|||+|+++..++ .+.+.+
T Consensus 1 m~~~~~~~aiiLGiVqGiTEfLPISSTgHlilv~~~l~~~~~~~~F~iviqlGailAV~~~f~~~i~~~l~~~~l~~~~~ 80 (270)
T COG1968 1 MDMMELLQAIILGIVEGITEFLPISSTGHLILVGHLLGFSDAGKSFEIVIQLGAILAVVVYFWNDLLRLLKGFRLKTDRE 80 (270)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 95589999999999960244344584268999999977697567999999998899999999999999973012466056
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 002--279988987653112554234442014578310024555688999999963200244433320244547788998
Q gi|254780593|r 78 ARH--FTITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITLIIGGFILLLVDRLKFESKYFHIENYPIPLAIKIGLFQ 155 (266)
Q Consensus 78 ~~~--~~~~iiiatiP~~iiG~~~~~~i~~~~~~~~~~i~~~lii~gilL~~~d~~~~~~~~~~~~~~~~~~a~~IGl~Q 155 (266)
+++ +.++++++|+|++++|++++|++++.++ ++..++.+++++|++++++|+.+++.+.++.||++++||++||++|
T Consensus 81 ~~~~~l~l~ilvatiPa~v~Gl~~~d~i~~~l~-~~~~va~~lIv~gi~li~~e~~~~~~~~~~~~~l~~~da~~IGlaQ 159 (270)
T COG1968 81 SRRFRLWLKILVATIPAVVLGLLFKDFIKSHLF-NPRVVAIALIVGGILLILAEKLNKKPRLRDLDDLTLRDALIIGLAQ 159 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHH
T ss_conf 678999999999998188866779988998715-7089999999999999999984435576875328999999999999
Q ss_pred HHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74421035688899999997268889999999999999999999863221111000000499999999999999999999
Q gi|254780593|r 156 CIAMIPGTSRSGATITGALILGADKRSAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEIIIGFMASFITSLLVIRS 235 (266)
Q Consensus 156 ~lAliPGiSRSG~TI~~~l~lG~~r~~A~~fSFllsiP~i~gA~~l~~~~~~~~~~~~~~~~~~ig~~~sfi~~~~~i~~ 235 (266)
|+|++||+||||+||++++++|+||++|+||||+|+||+++||+.++++|..+.....+.+++.+|+++||++|++++||
T Consensus 160 ~lAl~PG~SRSGaTI~~~lllG~~r~~AaefSFlLaIP~m~GA~~l~l~k~~~~~~~~~~~~l~vg~i~AFvv~~~~I~~ 239 (270)
T COG1968 160 CLALIPGTSRSGATISGGLLLGLSREAAAEFSFLLAIPAMFGASALDLFKSGDALSAADLPILLVGFIVAFVVSLIAIKF 239 (270)
T ss_pred HHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99875788863899999999188898899997998988999999999986201000210699999999999999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 999998188701476689999999999867
Q gi|254780593|r 236 LFQVIAKRGYTPFALWRILIGFVGLFLEIF 265 (266)
Q Consensus 236 ll~~~~~~~l~~F~~Yri~lG~~~l~~~~~ 265 (266)
+++++||+++.||++||+++|++.+.+...
T Consensus 240 ll~~i~~~~~~~F~~Yrivlgi~~l~~~~~ 269 (270)
T COG1968 240 LLRFIKRHSFIPFAIYRIVLGIVVLVLLFI 269 (270)
T ss_pred HHHHHHHCCCEEHHHHHHHHHHHHHHHHHH
T ss_conf 999998689702179999999999999973
No 4
>pfam02673 BacA Bacitracin resistance protein BacA. Bacitracin resistance protein (BacA) is a putative undecaprenol kinase. BacA confers resistance to bacitracin, probably by phosphorylation of undecaprenol.
Probab=100.00 E-value=0 Score=525.10 Aligned_cols=248 Identities=39% Similarity=0.743 Sum_probs=229.9
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCHHHHH
Q ss_conf 999999987565310207426899999982868--102899999984887899999998899986134----68000022
Q gi|254780593|r 8 IALILGVVEGVTEFIPVSSTAHLLLVSRLLGAD--LGSSFIVLVQLGAVSALLYVYFGRILSIFVSFP----FSAAARHF 81 (266)
Q Consensus 8 ~aiilgiiQGiTEfLPISSsgHl~l~~~ll~~~--~~~~f~v~lhlGtl~Avl~~f~~~i~~~~~~~~----~~~~~~~~ 81 (266)
||+++|++||+|||||||||||++++++++++| ++..||+++|+||++|+++|||||++++.++.. .+++++++
T Consensus 1 ~aillgiiQGiTEFLPISSsGHl~l~~~~~~~~~~~~~~f~i~lH~GtllAv~~~f~~~i~~~~~~~~~~~~~~~~~~~~ 80 (255)
T pfam02673 1 QAIILGIVQGLTEFLPISSTGHLILVSHLLGWDSDPGLAFDVVIQLGTILAVLVYFRKDILRLLRGLLRSLRRDKPDRRL 80 (255)
T ss_pred CEEHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 91024877761047165756799999999689953008999999998899999999999999999886420258813689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 79988987653112554234442014578310024555688999999963200244433320244547788998744210
Q gi|254780593|r 82 TITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITLIIGGFILLLVDRLKFESKYFHIENYPIPLAIKIGLFQCIAMIP 161 (266)
Q Consensus 82 ~~~iiiatiP~~iiG~~~~~~i~~~~~~~~~~i~~~lii~gilL~~~d~~~~~~~~~~~~~~~~~~a~~IGl~Q~lAliP 161 (266)
.+++++||+|++++|+++++.+++. ++++..++++++++|++|+++|+.++++ ++.+|+|++||++||++||+|++|
T Consensus 81 ~~~iiiatlP~~iiG~~~~~~i~~~-~~~~~~i~~~lii~gilL~~~d~~~~~~--~~~~~~~~~~a~~IGl~Q~lAliP 157 (255)
T pfam02673 81 LLLIIIGTIPAGVVGLLFKDFIEAL-LRSPVVIAIALIVGGLLLLLAERLGKKR--RTLDDISLKDALLIGLAQALALIP 157 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 9999999988999999999999998-5388999999999999999999954377--866647899999999999954678
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35688899999997268889999999999999999999863221111000000499999999999999999999999998
Q gi|254780593|r 162 GTSRSGATITGALILGADKRSAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEIIIGFMASFITSLLVIRSLFQVIA 241 (266)
Q Consensus 162 GiSRSG~TI~~~l~lG~~r~~A~~fSFllsiP~i~gA~~l~~~~~~~~~~~~~~~~~~ig~~~sfi~~~~~i~~ll~~~~ 241 (266)
|+||||+||+++|++|+||++|+||||+|++|+++||+++|++|..+........++++|+++||++|++++||++|++|
T Consensus 158 GiSRSG~TI~a~lllG~~r~~A~~fSFllsIP~i~ga~~~~l~~~~~~~~~~~~~~l~~g~i~Sfi~~~~sI~~ll~~~~ 237 (255)
T pfam02673 158 GVSRSGATITAGLLLGLDREAAARFSFLLAIPAILGAGLLELLKLFDLLSADDLGPLLVGFIVAFVVALLAIKWLLRFLK 237 (255)
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75644589999999499989999999999999999999999999871044656999999999999999999999999998
Q ss_pred HCCCCHHHHHHHHHHHH
Q ss_conf 18870147668999999
Q gi|254780593|r 242 KRGYTPFALWRILIGFV 258 (266)
Q Consensus 242 ~~~l~~F~~Yri~lG~~ 258 (266)
|++++||++||+++|.+
T Consensus 238 ~~~~~~F~iYri~lGii 254 (255)
T pfam02673 238 RHSFKPFAIYRIILGIL 254 (255)
T ss_pred HCCCEEHHHHHHHHHHC
T ss_conf 88981349899779950
No 5
>TIGR00753 undec_kin_bacA undecaprenol kinase, putative; InterPro: IPR003824 Bacitracin resistance protein (BacA) may confer resistance to bacitracin by phosphorylation of undecaprenol .; GO: 0016020 membrane.
Probab=100.00 E-value=0 Score=353.75 Aligned_cols=248 Identities=40% Similarity=0.739 Sum_probs=226.9
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CC
Q ss_conf 999999875653102074268999999828------68102899999984887899999998899986134-------68
Q gi|254780593|r 9 ALILGVVEGVTEFIPVSSTAHLLLVSRLLG------ADLGSSFIVLVQLGAVSALLYVYFGRILSIFVSFP-------FS 75 (266)
Q Consensus 9 aiilgiiQGiTEfLPISSsgHl~l~~~ll~------~~~~~~f~v~lhlGtl~Avl~~f~~~i~~~~~~~~-------~~ 75 (266)
++++|++||+|||+||||+||+.++++.++ .|.+..|++.+|+|+..|+.++||+|+.+...... ..
T Consensus 1 ~~~lg~~~G~teflP~ss~ghl~~~~~~~~~~~~~~~~~~~~f~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (269)
T TIGR00753 1 AIVLGIVEGLTEFLPVSSTGHLILVGHILGKSNLFSGDAGKSFEVVIQLGSILAVVIYFWRRLLGLLGIWIRGLLTREGE 80 (269)
T ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 90124353245432556652377787776310000010012422333365789999999999999988876212210001
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHH
Q ss_conf 0000227998898765311255423444201---45783100245556889999999632002-4443332024454778
Q gi|254780593|r 76 AAARHFTITLFLGFFPTVVCGFFAYNFIKSI---LFKEMIIIHITLIIGGFILLLVDRLKFES-KYFHIENYPIPLAIKI 151 (266)
Q Consensus 76 ~~~~~~~~~iiiatiP~~iiG~~~~~~i~~~---~~~~~~~i~~~lii~gilL~~~d~~~~~~-~~~~~~~~~~~~a~~I 151 (266)
+.+++..+.+.++++|+++.|+.+++.+++. .+++...+..++++++.++..+|+.++++ ...+.|++++++++.+
T Consensus 81 ~~~~~~~~~~~~g~~p~~~~G~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (269)
T TIGR00753 81 SGDLLLGLGILLGLIPTVVLGLLFKDLIKSGDNSLFNFLLTVVIALIVGGGLLILAEELGPKETLKRDLERLTWRDAIVV 160 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 02368999999999999999999988763200034446899999999999999999861542224675012357889998
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHHH
Q ss_conf 8998744210356888999999972688899999999999999999998632211110000004----999999999999
Q gi|254780593|r 152 GLFQCIAMIPGTSRSGATITGALILGADKRSAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIG----KEIIIGFMASFI 227 (266)
Q Consensus 152 Gl~Q~lAliPGiSRSG~TI~~~l~lG~~r~~A~~fSFllsiP~i~gA~~l~~~~~~~~~~~~~~----~~~~ig~~~sfi 227 (266)
|++||+|++||+||||+|+++++++|+||+.|+||||++++|++.+|+.++..+.++.....+. +++.+|++.+|+
T Consensus 161 G~~~~l~~~PG~srsG~t~~~g~~~g~~~~~a~~f~fl~~~P~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~g~~~~f~ 240 (269)
T TIGR00753 161 GLFQCLALWPGVSRSGSTISGGLLLGLNRKAAAEFSFLLAIPAVFGAGLLDLKKSWDSLTSGDFATGIPPLIVGFITAFV 240 (269)
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 88888774167543430455456641104677778899987999888888766530302222332134889999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999999999998188701476689999
Q gi|254780593|r 228 TSLLVIRSLFQVIAKRGYTPFALWRILIG 256 (266)
Q Consensus 228 ~~~~~i~~ll~~~~~~~l~~F~~Yri~lG 256 (266)
+++.+++|++|++++++++||++||+++|
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~f~~y~~~~g 269 (269)
T TIGR00753 241 VGLFAVKWFLKFLNKHSLYPFAIYRFLLG 269 (269)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHCC
T ss_conf 99999999999987414042024211119
No 6
>pfam01925 TauE Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.
Probab=96.74 E-value=0.048 Score=32.37 Aligned_cols=166 Identities=17% Similarity=0.182 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH--CCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 9999999987565310207426899999982--86810--2899999984887899999998899986134680000227
Q gi|254780593|r 7 IIALILGVVEGVTEFIPVSSTAHLLLVSRLL--GADLG--SSFIVLVQLGAVSALLYVYFGRILSIFVSFPFSAAARHFT 82 (266)
Q Consensus 7 ~~aiilgiiQGiTEfLPISSsgHl~l~~~ll--~~~~~--~~f~v~lhlGtl~Avl~~f~~~i~~~~~~~~~~~~~~~~~ 82 (266)
+-+++-|.+||++-+ .|-++..|-+. ..++. ..-....+.-+.......|||+ ...+++..
T Consensus 3 ~~~~~~g~v~~~~G~-----G~~~i~~P~l~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~----------~~v~~k~~ 67 (236)
T pfam01925 3 LAGLLAGFLAGLTGF-----GGGLIAVPLLLLLLGPPHVAVGTSLLAVLVTSLSGALAHRRR----------GNVDWRLA 67 (236)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCCCHHHH
T ss_conf 999999999999998-----899999999999987799999999999999999999999990----------88538999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH----HHHHHHHHHH
Q ss_conf 998898765311255423444201457831002455568899999996320024443332024454----7788998744
Q gi|254780593|r 83 ITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITLIIGGFILLLVDRLKFESKYFHIENYPIPLA----IKIGLFQCIA 158 (266)
Q Consensus 83 ~~iiiatiP~~iiG~~~~~~i~~~~~~~~~~i~~~lii~gilL~~~d~~~~~~~~~~~~~~~~~~a----~~IGl~Q~lA 158 (266)
+.+.++.+|.+.+|..+-..+++.. -...++..+++.++.+...++.+++++. ++.+.... ...|+..++.
T Consensus 68 ~~~~~~~iiG~~lG~~l~~~~~~~~--l~~~ig~~li~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~g~~~G~~~G~~ 142 (236)
T pfam01925 68 LLLALGGLLGALLGALLLLLLPGAV--LKLLFGVLLLLAALLMLLRPRLAAAASR---RPPGALALLLAGGLIGFLSGLF 142 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHHHHHHCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999999999889999--9999999999999999970556544444---5655089999999999995112
Q ss_pred HCCHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 2103568-889999999726888999999999999999
Q gi|254780593|r 159 MIPGTSR-SGATITGALILGADKRSAAEFSFFIAIPTI 195 (266)
Q Consensus 159 liPGiSR-SG~TI~~~l~lG~~r~~A~~fSFllsiP~i 195 (266)
|++= ...........|.|++++..-+-......-
T Consensus 143 ---g~g~g~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 177 (236)
T pfam01925 143 ---GIGGGFLLVPALLLLLGLPLKKAVATSLLVILLSS 177 (236)
T ss_pred ---CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf ---23353779999999829999999999999999999
No 7
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=94.58 E-value=0.35 Score=26.75 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 8999999848878999
Q gi|254780593|r 44 SFIVLVQLGAVSALLY 59 (266)
Q Consensus 44 ~f~v~lhlGtl~Avl~ 59 (266)
.+...+-++|+.+.++
T Consensus 87 ~l~~~liiatiP~~ii 102 (277)
T PRK12554 87 RFGWYLIIATIPAGVI 102 (277)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999989999
No 8
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=93.86 E-value=0.5 Score=25.80 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCH
Q ss_conf 531389999999987565310207426899999982868102
Q gi|254780593|r 2 LRYSIIIALILGVVEGVTEFIPVSSTAHLLLVSRLLGADLGS 43 (266)
Q Consensus 2 ~~m~~~~aiilgiiQGiTEfLPISSsgHl~l~~~ll~~~~~~ 43 (266)
..+++-+|++.|+-|++.-+==+|-||-.+...-++|.|+..
T Consensus 145 ~~l~~~da~~IGlaQ~lAl~PG~SRSGaTI~~~lllG~~r~~ 186 (270)
T COG1968 145 DDLTLRDALIIGLAQCLALIPGTSRSGATISGGLLLGLSREA 186 (270)
T ss_pred HHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHH
T ss_conf 328999999999999998757888638999999991888988
No 9
>COG0730 Predicted permeases [General function prediction only]
Probab=88.23 E-value=1.9 Score=22.09 Aligned_cols=234 Identities=18% Similarity=0.197 Sum_probs=111.8
Q ss_pred CCHHHHHHH----HHHHHHHHHHHHHCCCCHHHHHHHHHHH--CCCCCHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 953138999----9999987565310207426899999982--8681028--9999-99848878999999988999861
Q gi|254780593|r 1 MLRYSIIIA----LILGVVEGVTEFIPVSSTAHLLLVSRLL--GADLGSS--FIVL-VQLGAVSALLYVYFGRILSIFVS 71 (266)
Q Consensus 1 m~~m~~~~a----iilgiiQGiTEfLPISSsgHl~l~~~ll--~~~~~~~--f~v~-lhlGtl~Avl~~f~~~i~~~~~~ 71 (266)
|+.++++.. .+.|+++|++-. -|-.+.+|-++ +.++..+ -+.. .-.++..+... |+|+
T Consensus 2 ~~~~~~~~~~~~g~~~g~i~g~~G~-----Ggg~i~~P~L~~~~~~~~~a~~t~l~~~~~~~~~~~~~-~~k~------- 68 (258)
T COG0730 2 LDLMTLLLLFLVGLLAGFISGLAGG-----GGGLLTVPALLLLGLPPAAALGTSLLAVLFTSLSSALA-YLKR------- 68 (258)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-HHHH-------
T ss_conf 6189999999999999999871634-----51999999999961789999999999999999999999-9992-------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCHH----HH
Q ss_conf 346800002279988987653112554234442014578310024555688999999963-2002444333202----44
Q gi|254780593|r 72 FPFSAAARHFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITLIIGGFILLLVDRL-KFESKYFHIENYP----IP 146 (266)
Q Consensus 72 ~~~~~~~~~~~~~iiiatiP~~iiG~~~~~~i~~~~~~~~~~i~~~lii~gilL~~~d~~-~~~~~~~~~~~~~----~~ 146 (266)
++.+++....+..+.++...+|...-..+++... ...++..++..++.+....+. +.+.+..+..... ..
T Consensus 69 ---~~v~~~~~~~l~~~~~~G~~lG~~l~~~~~~~~l--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (258)
T COG0730 69 ---GNVDWKLALILLLGALIGAFLGALLALLLPAELL--KLLFGLLLLLLALYMLLGPRLAKAEDRAARLRPLLFALALL 143 (258)
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf ---6861999999999999999999999987878889--99999999999999997232233332211246401689999
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 54778899874421035688899999997268889999999999999999999863221111000000499999999999
Q gi|254780593|r 147 LAIKIGLFQCIAMIPGTSRSGATITGALILGADKRSAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEIIIGFMASF 226 (266)
Q Consensus 147 ~a~~IGl~Q~lAliPGiSRSG~TI~~~l~lG~~r~~A~~fSFllsiP~i~gA~~l~~~~~~~~~~~~~~~~~~ig~~~sf 226 (266)
-.+.+|+.-++-=..|= .+....-....+.+.+.+.--|.....+.-..+...-.... ...++.....-...+.
T Consensus 144 ~g~~~G~~~G~~G~GgG--~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~l~~g~~ 217 (258)
T COG0730 144 IGFLAGFLSGLFGVGGG--FGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFAL----GAVDWPLALLLAVGSI 217 (258)
T ss_pred HHHHHHHHHHHCCCCCH--HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHH
T ss_conf 99999999983031717--78999999972573379999999999999999999999984----7510989999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHH
Q ss_conf 99999999999999818870147-6689999999
Q gi|254780593|r 227 ITSLLVIRSLFQVIAKRGYTPFA-LWRILIGFVG 259 (266)
Q Consensus 227 i~~~~~i~~ll~~~~~~~l~~F~-~Yri~lG~~~ 259 (266)
+-+++..|.-.|.- ...++... .-.+.++...
T Consensus 218 ~G~~lG~~l~~~~~-~~~lr~~~~~~~~~~~~~~ 250 (258)
T COG0730 218 LGAYLGARLARRLS-PKVLRRLFALVLLAVAIKL 250 (258)
T ss_pred HHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998679-9999999999999999999
No 10
>pfam04018 DUF368 Domain of unknown function (DUF368). Predicted transmembrane domain of unknown function. Family members have between 6 and 9 predicted transmembrane segments.
Probab=84.83 E-value=2.8 Score=20.94 Aligned_cols=33 Identities=21% Similarity=0.160 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHH
Q ss_conf 3202445477889987442-10356888999999
Q gi|254780593|r 141 ENYPIPLAIKIGLFQCIAM-IPGTSRSGATITGA 173 (266)
Q Consensus 141 ~~~~~~~a~~IGl~Q~lAl-iPGiSRSG~TI~~~ 173 (266)
.+.++.--++.|..-.-|+ +||+|=|-.-+.-|
T Consensus 134 ~~~~~~~lf~~G~iA~~AMILPGISGS~iLLilG 167 (250)
T pfam04018 134 SPPSLLFLFFAGAIAICAMILPGISGSFILLLLG 167 (250)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 8852999999999999998805640889999998
No 11
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=74.52 E-value=2.6 Score=21.13 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHH--HCCCHHHHHHH
Q ss_conf 1035688899999997--26888999999
Q gi|254780593|r 160 IPGTSRSGATITGALI--LGADKRSAAEF 186 (266)
Q Consensus 160 iPGiSRSG~TI~~~l~--lG~~r~~A~~f 186 (266)
--|+|||++.+.+=++ .|++-++|.++
T Consensus 86 ~~G~sRS~~vv~aYLm~~~~~~~~~A~~~ 114 (138)
T smart00195 86 QAGVSRSATLIIAYLMKYRNLSLNDAYDF 114 (138)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 98775549999999999839999999999
No 12
>TIGR01946 rnfD electron transport complex, RnfABCDGE type, D subunit; InterPro: IPR011303 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This entry describes the D subunit.; GO: 0006118 electron transport, 0016021 integral to membrane.
Probab=72.81 E-value=5.5 Score=19.07 Aligned_cols=153 Identities=13% Similarity=0.125 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 79988987653112554234442014578310024555688999999963200244433320244547788998744210
Q gi|254780593|r 82 TITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITLIIGGFILLLVDRLKFESKYFHIENYPIPLAIKIGLFQCIAMIP 161 (266)
Q Consensus 82 ~~~iiiatiP~~iiG~~~~~~i~~~~~~~~~~i~~~lii~gilL~~~d~~~~~~~~~~~~~~~~~~a~~IGl~Q~lAliP 161 (266)
+|.+++|++.|.++|--.|-=+-+|.| ||..+|.+.++-+.=...+.+...++-- .|-.+++||+-+= +-
T Consensus 88 wW~~~iG~~fAi~~gKhlYGGLGqN~F-NPAmvGyv~LLiSFP~~MT~W~~p~~~~--~~~p~~~ds~~~I-------F~ 157 (346)
T TIGR01946 88 WWMVVIGTVFAIVLGKHLYGGLGQNIF-NPAMVGYVVLLISFPVQMTTWMAPGKLL--LEPPSFKDSLSLI-------FS 157 (346)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHHCCCCCCHHH--CCCCCHHHHHHHH-------HC
T ss_conf 999999999999998754066688743-1799999999997576751346774022--0577578999998-------50
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--CC---CCCHHHHHHHH--HHHHHHHHHHH
Q ss_conf 35688899999997268889999999999999999999863221111-0--00---00049999999--99999999999
Q gi|254780593|r 162 GTSRSGATITGALILGADKRSAAEFSFFIAIPTIIGACVLDFYKNYN-V--IV---NNIGKEIIIGF--MASFITSLLVI 233 (266)
Q Consensus 162 GiSRSG~TI~~~l~lG~~r~~A~~fSFllsiP~i~gA~~l~~~~~~~-~--~~---~~~~~~~~ig~--~~sfi~~~~~i 233 (266)
|.-|+|.+..--+ +.+=++..||-|+..|... . .. +....+...|- ..+..--+.++
T Consensus 158 ~~~~~G~~~~~l~---------------~~~Dg~t~ATPLd~~K~~~~~~~~~~~~e~~~~~~F~G~~~~~g~~we~~nl 222 (346)
T TIGR01946 158 GLTIDGVSLSQLR---------------LGIDGITTATPLDLFKTGLSLTDALAEIEFLKLPIFLGKEVLGGSGWEWVNL 222 (346)
T ss_pred CCCCCCCCHHHHH---------------CCCCEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 2223653075342---------------0776032035788851004643220000220032101422566655999999
Q ss_pred HH---HHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99---999998188701476689999999
Q gi|254780593|r 234 RS---LFQVIAKRGYTPFALWRILIGFVG 259 (266)
Q Consensus 234 ~~---ll~~~~~~~l~~F~~Yri~lG~~~ 259 (266)
.+ .+-.+.|+-.++..---++.++..
T Consensus 223 A~L~Gg~~LL~~K~I~WhIP~~~l~tl~~ 251 (346)
T TIGR01946 223 AFLLGGIYLLYKKIITWHIPVSMLATLFV 251 (346)
T ss_pred HHHHHHHHHHHHCCEEEECCHHHHHHHHH
T ss_conf 99999999997670433325799999999
No 13
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=70.33 E-value=4.1 Score=19.86 Aligned_cols=27 Identities=41% Similarity=0.610 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHH--HCCCHHHHHHH
Q ss_conf 1035688899999997--26888999999
Q gi|254780593|r 160 IPGTSRSGATITGALI--LGADKRSAAEF 186 (266)
Q Consensus 160 iPGiSRSG~TI~~~l~--lG~~r~~A~~f 186 (266)
--|+|||++.+.+=++ .|++-++|.++
T Consensus 89 ~~G~sRS~~iv~aYLm~~~~~~~~~A~~~ 117 (139)
T cd00127 89 LAGVSRSATLVIAYLMKTLGLSLREAYEF 117 (139)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 98774209999999999819999999999
No 14
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=68.62 E-value=3.9 Score=20.05 Aligned_cols=34 Identities=24% Similarity=0.072 Sum_probs=21.2
Q ss_pred HCCHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH
Q ss_conf 2103568889999999726--888999999999999
Q gi|254780593|r 159 MIPGTSRSGATITGALILG--ADKRSAAEFSFFIAI 192 (266)
Q Consensus 159 liPGiSRSG~TI~~~l~lG--~~r~~A~~fSFllsi 192 (266)
..=|+||||..+.+-+++. ....+++..=-.-.-
T Consensus 112 C~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r 147 (180)
T COG2453 112 CQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRR 147 (180)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
T ss_conf 789986689999999999649998999999998527
No 15
>TIGR01129 secD protein-export membrane protein SecD; InterPro: IPR005791 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component. . From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) . The chaperone protein SecB is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion . Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains . Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. This entry describes the SecD family of transport proteins. Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. ; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=65.97 E-value=9.2 Score=17.61 Aligned_cols=69 Identities=28% Similarity=0.407 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8889999999726888999999999999999999986322111100000049999999999999999999999
Q gi|254780593|r 165 RSGATITGALILGADKRSAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEIIIGFMASFITSLLVIRSLF 237 (266)
Q Consensus 165 RSG~TI~~~l~lG~~r~~A~~fSFllsiP~i~gA~~l~~~~~~~~~~~~~~~~~~ig~~~sfi~~~~~i~~ll 237 (266)
|.|-++.-|.=.|++|..++-+. -=+-++.+|.+|=.+ ........-.-+.+|.++|++|++..-|+|+
T Consensus 454 r~G~s~~~Ai~~Gf~rA~~~I~D--aN~Ttliaa~~Ly~~--GtG~vKGFA~tl~iGi~~S~fta~~~~R~l~ 522 (522)
T TIGR01129 454 RLGKSVQQAIEAGFERAFSTILD--ANITTLIAALILYVF--GTGPVKGFAVTLAIGIIASLFTALVVTRLLL 522 (522)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 47895789998888889999999--739999999999886--0252257889899999999999989875409
No 16
>PRK10483 tryptophan permease; Provisional
Probab=63.88 E-value=10 Score=17.35 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 898765311255423
Q gi|254780593|r 86 FLGFFPTVVCGFFAY 100 (266)
Q Consensus 86 iiatiP~~iiG~~~~ 100 (266)
++.++|..+.-+.++
T Consensus 194 ~~~alPv~~tSFgfh 208 (414)
T PRK10483 194 LLMTLPFCLASFGYH 208 (414)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999998753
No 17
>PRK10621 hypothetical protein; Provisional
Probab=59.84 E-value=12 Score=16.90 Aligned_cols=196 Identities=15% Similarity=0.188 Sum_probs=102.8
Q ss_pred CCCHHHHHHHHHHH--CCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 07426899999982--868102---8999999848878999999988999861346800002279988987653112554
Q gi|254780593|r 24 VSSTAHLLLVSRLL--GADLGS---SFIVLVQLGAVSALLYVYFGRILSIFVSFPFSAAARHFTITLFLGFFPTVVCGFF 98 (266)
Q Consensus 24 ISSsgHl~l~~~ll--~~~~~~---~f~v~lhlGtl~Avl~~f~~~i~~~~~~~~~~~~~~~~~~~iiiatiP~~iiG~~ 98 (266)
+.-.|-++-+|-++ |.++.. +-.+..-.|+..|..-|+|++ ..+++..+...+.+++-+++|-.
T Consensus 31 iAGGGglIt~PaLl~~Glpp~~AnaTNk~a~~~g~~~a~~~~~r~~-----------~~~~~~~~~~~~~~~iGa~~Ga~ 99 (269)
T PRK10621 31 IAGGGGLLTIPALMAAGMSPAQALATNKLQACGGSFSASLYFIRRK-----------VVNLKDQKLNIAMTFVGSMSGAL 99 (269)
T ss_pred HCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 7066189999999987998899988748999977899999998614-----------67688999999999999999999
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 23444201457831002455568899999996320024443332--0244547788998744210356888999999972
Q gi|254780593|r 99 AYNFIKSILFKEMIIIHITLIIGGFILLLVDRLKFESKYFHIEN--YPIPLAIKIGLFQCIAMIPGTSRSGATITGALIL 176 (266)
Q Consensus 99 ~~~~i~~~~~~~~~~i~~~lii~gilL~~~d~~~~~~~~~~~~~--~~~~~a~~IGl~Q~lAliPGiSRSG~TI~~~l~l 176 (266)
.-..+++..++ ..+.+.++.-++......+.+++.+.++... ....-.+.+|+-.++ .=||.. +=.+..-.+..
T Consensus 100 l~~~~~~~~f~--~iv~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~Y~Gf-fg~G~G-~~~~~~l~~~~ 175 (269)
T PRK10621 100 LVQYVQADILR--QILPILVICIGLYFLLMPKLGEEDRQRRLYGLPFALIAGGCVGFYDGF-FGPGAG-SFYALAFVTLC 175 (269)
T ss_pred HHHHCCHHHHH--HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCE-ECCCHH-HHHHHHHHHHC
T ss_conf 99958999999--999999999999999477467532113210007999999999997262-056689-99999999992
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 688899999999999999999998632211110000004999999999999999999999999
Q gi|254780593|r 177 GADKRSAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEIIIGFMASFITSLLVIRSLFQV 239 (266)
Q Consensus 177 G~~r~~A~~fSFllsiP~i~gA~~l~~~~~~~~~~~~~~~~~~ig~~~sfi~~~~~i~~ll~~ 239 (266)
|+|-.+|.-.+-++..-.-.+|.+.=..+ ...++..-+.-.+-+.+=||+.-|+-.|.
T Consensus 176 g~~l~~a~a~~~~l~~~~n~~a~~iF~~~-----G~V~W~~~l~ma~G~~~Gg~lGa~~a~k~ 233 (269)
T PRK10621 176 GFNLAKSTAHAKVLNATSNIGGLLLFILG-----GKVIWATGFVMLVGQFLGARMGSRLVLSK 233 (269)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99889999999999999999999999938-----83179999999999999999999999985
No 18
>pfam00782 DSPc Dual specificity phosphatase, catalytic domain. Ser/Thr and Tyr protein phosphatases. The enzyme's tertiary fold is highly similar to that of tyrosine-specific phosphatases, except for a "recognition" region.
Probab=56.82 E-value=10 Score=17.26 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHHHH--CCCHHHHHHH
Q ss_conf 0356888999999972--6888999999
Q gi|254780593|r 161 PGTSRSGATITGALIL--GADKRSAAEF 186 (266)
Q Consensus 161 PGiSRSG~TI~~~l~l--G~~r~~A~~f 186 (266)
-|+|||++...+-++. +++-++|.++
T Consensus 80 ~G~sRS~~i~~aYLm~~~~~~~~~A~~~ 107 (131)
T pfam00782 80 AGISRSATLIIAYLMKTRNLSLNEAYSF 107 (131)
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9874019999999999829999999999
No 19
>pfam02293 AmiS_UreI AmiS/UreI family transporter. This family includes UreI and proton gated urea channel as well as putative amide transporters.
Probab=55.03 E-value=14 Score=16.39 Aligned_cols=28 Identities=36% Similarity=0.406 Sum_probs=17.6
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9997268889999999999999999999
Q gi|254780593|r 172 GALILGADKRSAAEFSFFIAIPTIIGAC 199 (266)
Q Consensus 172 ~~l~lG~~r~~A~~fSFllsiP~i~gA~ 199 (266)
.-+..|.|.+-=--||...+|-++.-|.
T Consensus 76 ~n~l~~~d~rglGWfsLfVAi~al~~a~ 103 (166)
T pfam02293 76 INNLLGLDGRGLGWFSLFVAITALPYAI 103 (166)
T ss_pred HHHHHCCCCCEEEHHHHHHHHHHHHHHH
T ss_conf 9998678976300799999999999999
No 20
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=48.15 E-value=18 Score=15.69 Aligned_cols=131 Identities=17% Similarity=0.347 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH----HHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 02279988987653112554234442014578310024555688999----99996320024443332024454778899
Q gi|254780593|r 79 RHFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITLIIGGFIL----LLVDRLKFESKYFHIENYPIPLAIKIGLF 154 (266)
Q Consensus 79 ~~~~~~iiiatiP~~iiG~~~~~~i~~~~~~~~~~i~~~lii~gilL----~~~d~~~~~~~~~~~~~~~~~~a~~IGl~ 154 (266)
+++..-.++|.+--+++-+.+.....-. + |+..+|.-|-+-|-=+ ...||.+++.+.. ++.+..|++=.++-
T Consensus 157 ~~~a~aaI~al~hDvii~~g~~slfgiE-~-~l~~IAAlLtiIGYSvNDtIVvfDRIREn~r~~--~~~~~~~iin~si~ 232 (305)
T COG0341 157 WRFALAAILALLHDVIITLGFFSLFGIE-F-NLATIAALLTIIGYSVNDTIVVFDRIRENLRKY--RRETLREIINTSIN 232 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHEE-E-CHHHHHHHHHHEEECCCCEEEEEHHHHHHHHHH--CCCCHHHHHHHHHH
T ss_conf 3779999999999999999999885034-3-499999999980120377699876888887660--26878999999999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87442103568889999999726888999999999999999999986322111100000049999999999999999999
Q gi|254780593|r 155 QCIAMIPGTSRSGATITGALILGADKRSAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEIIIGFMASFITSLLVIR 234 (266)
Q Consensus 155 Q~lAliPGiSRSG~TI~~~l~lG~~r~~A~~fSFllsiP~i~gA~~l~~~~~~~~~~~~~~~~~~ig~~~sfi~~~~~i~ 234 (266)
|.+ ||+.+|-..-++. ++++...-|.++ .+....+++|.++...++++--.
T Consensus 233 qTl------sRti~Ts~ttll~------------v~~l~~fgg~~l-----------~~fa~~llvGii~gtySSifiA~ 283 (305)
T COG0341 233 QTL------TRTINTSVTTLLV------------VVALLLFGGGSL-----------KDFALALLVGIIAGTYSSIFIAA 283 (305)
T ss_pred HHH------HHHHHHHHHHHHH------------HHHHHHCCCHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999------9999999999999------------999998072589-----------99899999999997773999999
Q ss_pred HHHHHHHH
Q ss_conf 99999981
Q gi|254780593|r 235 SLFQVIAK 242 (266)
Q Consensus 235 ~ll~~~~~ 242 (266)
.++.+.++
T Consensus 284 pll~~~~~ 291 (305)
T COG0341 284 PLLLLLGK 291 (305)
T ss_pred HHHHHHHH
T ss_conf 99999887
No 21
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=47.13 E-value=19 Score=15.59 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00004999999999999999999999999981
Q gi|254780593|r 211 VNNIGKEIIIGFMASFITSLLVIRSLFQVIAK 242 (266)
Q Consensus 211 ~~~~~~~~~ig~~~sfi~~~~~i~~ll~~~~~ 242 (266)
....-.-+.+|.++|.+++++.-|.++.+.-+
T Consensus 472 vkGFA~tL~igi~~s~fta~~~tr~l~~~~~~ 503 (513)
T PRK05812 472 VKGFAVTLGIGILTSMFTAITVTRALVNLLYG 503 (513)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 12899999999999999999999999999965
No 22
>COG2035 Predicted membrane protein [Function unknown]
Probab=43.67 E-value=21 Score=15.25 Aligned_cols=161 Identities=20% Similarity=0.266 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC--------C------CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 313899999999875653102074268999999828--------6------81028999999848878999999988999
Q gi|254780593|r 3 RYSIIIALILGVVEGVTEFIPVSSTAHLLLVSRLLG--------A------DLGSSFIVLVQLGAVSALLYVYFGRILSI 68 (266)
Q Consensus 3 ~m~~~~aiilgiiQGiTEfLPISSsgHl~l~~~ll~--------~------~~~~~f~v~lhlGtl~Avl~~f~~~i~~~ 68 (266)
+++++.-++-|+.-|..+-.|==|-|-+.+.-...+ . .++-.|-+.+-.|-+.++... .++.+.
T Consensus 1 m~s~i~~~~kG~~mG~AdivPGVSGGTiAlilGIYerlI~~i~~~~~~~~~~~~~~fLi~l~~G~~~~i~~~--a~ii~~ 78 (276)
T COG2035 1 MLSWINIVFKGILMGAADIVPGVSGGTIALILGIYERLIEAIAGIFKLDEFKRNVLFLIPLGIGMLLGIFLF--AKIIEY 78 (276)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_conf 910999999999998742078873229999998999999987500122346640488999999999999999--999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 861346800002279988987653112554234442014578310024555688999-9999632002444333202445
Q gi|254780593|r 69 FVSFPFSAAARHFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITLIIGGFIL-LLVDRLKFESKYFHIENYPIPL 147 (266)
Q Consensus 69 ~~~~~~~~~~~~~~~~iiiatiP~~iiG~~~~~~i~~~~~~~~~~i~~~lii~gilL-~~~d~~~~~~~~~~~~~~~~~~ 147 (266)
+... ......-+..-++++++|..+= .++....+ ...-+..++.|... ...-+.++.++.. ..+-++..
T Consensus 79 ll~~-yp~~t~~fF~GlI~~sVp~llk------~i~~~s~~--~~~~l~~li~gfii~~~~~~~~~~~~~~-~~~~~~i~ 148 (276)
T COG2035 79 LLEN-YPVPTLAFFAGLILGSVPSLLK------EINYKSVK--TVNRLFALILGFIILGLILYLNNIQTAS-ITTGYLIL 148 (276)
T ss_pred HHHH-CCHHHHHHHHHHHHHHHHHHHH------HHHHHCCC--HHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCHHHH
T ss_conf 9984-8478999999999988999998------87340330--0757999999999999999525565554-46335999
Q ss_pred HHHHHHHHHHHH-CCHHHHHHHHHHHHHH
Q ss_conf 477889987442-1035688899999997
Q gi|254780593|r 148 AIKIGLFQCIAM-IPGTSRSGATITGALI 175 (266)
Q Consensus 148 a~~IGl~Q~lAl-iPGiSRSG~TI~~~l~ 175 (266)
-++-|..-+-|+ +||+|-|=.=+..|..
T Consensus 149 ~~~aGavAa~AMilPGiSGS~lLLllG~Y 177 (276)
T COG2035 149 LFIAGAVAACAMILPGISGSFLLLLLGVY 177 (276)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999999977717887587999999648
No 23
>PRK10746 putative transport protein YifK; Provisional
Probab=42.74 E-value=22 Score=15.16 Aligned_cols=18 Identities=17% Similarity=0.388 Sum_probs=10.3
Q ss_pred HHHHHHHHHH---HHCCCCHH
Q ss_conf 9999875653---10207426
Q gi|254780593|r 11 ILGVVEGVTE---FIPVSSTA 28 (266)
Q Consensus 11 ilgiiQGiTE---fLPISSsg 28 (266)
.+.+.|-..| ..|++.+.
T Consensus 56 ~~~~~~~~aEla~~~P~~Gg~ 76 (461)
T PRK10746 56 VFFIMRSMGEMLFLEPVTGSF 76 (461)
T ss_pred HHHHHHHHHHHHHHCCCCCCH
T ss_conf 999999999999877898878
No 24
>TIGR00732 dprA DNA protecting protein DprA; InterPro: IPR003488 The SMF family (DNA processing chain A, dprA) are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation .; GO: 0009294 DNA mediated transformation.
Probab=37.98 E-value=7.7 Score=18.12 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 202445477889987442103568889999999726888999
Q gi|254780593|r 142 NYPIPLAIKIGLFQCIAMIPGTSRSGATITGALILGADKRSA 183 (266)
Q Consensus 142 ~~~~~~a~~IGl~Q~lAliPGiSRSG~TI~~~l~lG~~r~~A 183 (266)
+---|.=++.|+..++=+.=.-+|||+=|||-..+-++|+..
T Consensus 159 ~Fp~RNRiisGLS~~~~V~eA~~KSGaLiTA~~A~~~gR~Vf 200 (238)
T TIGR00732 159 NFPKRNRIISGLSRAVLVVEAPLKSGALITARYALEQGREVF 200 (238)
T ss_pred CCCHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHCCEEE
T ss_conf 872156776442263376325887635889999997599689
No 25
>TIGR02697 WPE_wolbac Wolbachia palindromic element (WPE) domain; InterPro: IPR014070 This domain conceptually resembles IPR005728 from INTERPRO, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure..
Probab=34.69 E-value=11 Score=17.03 Aligned_cols=11 Identities=45% Similarity=0.733 Sum_probs=7.7
Q ss_pred HHHHHCCCCHH
Q ss_conf 65310207426
Q gi|254780593|r 18 VTEFIPVSSTA 28 (266)
Q Consensus 18 iTEfLPISSsg 28 (266)
.-+|+|||+++
T Consensus 34 ~~~WIPVS~t~ 44 (46)
T TIGR02697 34 KKNWIPVSATG 44 (46)
T ss_pred CCCCCCCCCCC
T ss_conf 21367612343
No 26
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=32.76 E-value=32 Score=14.16 Aligned_cols=57 Identities=25% Similarity=0.227 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 245556889999999632002444333202445-477889987442103568889999999
Q gi|254780593|r 115 HITLIIGGFILLLVDRLKFESKYFHIENYPIPL-AIKIGLFQCIAMIPGTSRSGATITGAL 174 (266)
Q Consensus 115 ~~~lii~gilL~~~d~~~~~~~~~~~~~~~~~~-a~~IGl~Q~lAliPGiSRSG~TI~~~l 174 (266)
..+++-..+++.++++.+++..++-.++..|.. -+.+|++=+.- |.++.|.|=--+.
T Consensus 250 ~val~~a~ill~~~~~~~~~~~~~il~~v~W~~l~Ff~Glfi~V~---gl~~~Gv~~~la~ 307 (424)
T COG1055 250 LVALVGAAILLLLARLSPRESVNKILRGVEWSTLLFFIGLFIVVG---GLENAGVTEDLAS 307 (424)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH---HHHHCCHHHHHHH
T ss_conf 999999999999862684023877663587379999987999999---9997682899999
No 27
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=32.70 E-value=32 Score=14.15 Aligned_cols=81 Identities=17% Similarity=0.411 Sum_probs=46.3
Q ss_pred HCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CCCHHH
Q ss_conf 26888999999----9999999999999863221111000000499999999999999999-99999999818-870147
Q gi|254780593|r 176 LGADKRSAAEF----SFFIAIPTIIGACVLDFYKNYNVIVNNIGKEIIIGFMASFITSLLV-IRSLFQVIAKR-GYTPFA 249 (266)
Q Consensus 176 lG~~r~~A~~f----SFllsiP~i~gA~~l~~~~~~~~~~~~~~~~~~ig~~~sfi~~~~~-i~~ll~~~~~~-~l~~F~ 249 (266)
.|.+|++|+-. -|++++|.++.-. +...|..+...++. ...+.+...+-+++|.- -+-+.+..++. + +.+.
T Consensus 335 ~~~~R~~a~~~~~~~~fl~gi~~~ls~g-~~~fD~~D~~~s~~-l~plgaL~~~i~~~w~~~~~~~~~~~~~~s~-~~~~ 411 (439)
T COG0733 335 FGISRKKATWLIGILIFLLGIPSILSFG-LSIFDLVDFVVSNI-LMPLGALLIAIFVGWVLKKELLREELNAGSA-KLFK 411 (439)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHH
T ss_conf 5753189999999999998689985378-22778899999999-9999999999999885088899999874136-6656
Q ss_pred HHHHHHHHHH
Q ss_conf 6689999999
Q gi|254780593|r 250 LWRILIGFVG 259 (266)
Q Consensus 250 ~Yri~lG~~~ 259 (266)
+|...+..+.
T Consensus 412 ~w~~~vr~i~ 421 (439)
T COG0733 412 IWLYLVRYIA 421 (439)
T ss_pred HHHHHHHHHH
T ss_conf 8999999999
No 28
>smart00352 POU Found in Pit-Oct-Unc transcription factors.
Probab=32.33 E-value=32 Score=14.12 Aligned_cols=43 Identities=14% Similarity=0.077 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 2024454778899874421035688899999997268889999999
Q gi|254780593|r 142 NYPIPLAIKIGLFQCIAMIPGTSRSGATITGALILGADKRSAAEFS 187 (266)
Q Consensus 142 ~~~~~~a~~IGl~Q~lAliPGiSRSG~TI~~~l~lG~~r~~A~~fS 187 (266)
.+++.++ -+.++++-+-|.++|.+||+----+.++-+.+-+.-
T Consensus 22 ~LG~TQ~---dVG~aL~~l~g~~~SQttIcRFE~l~LS~kn~~kLk 64 (75)
T smart00352 22 KLGFTQA---DVGLALGALYGPDFSQTTICRFEALQLSFKNMCKLK 64 (75)
T ss_pred HCCCCHH---HHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHH
T ss_conf 7377599---999999986186431468889886054798899889
No 29
>pfam03209 PUCC PUCC protein. This protein is required for high-level transcription of the PUC operon.
Probab=30.23 E-value=35 Score=13.91 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHH
Q ss_conf 2799889876531-12554234442014578-310024555688999999963200244-433320244547
Q gi|254780593|r 81 FTITLFLGFFPTV-VCGFFAYNFIKSILFKE-MIIIHITLIIGGFILLLVDRLKFESKY-FHIENYPIPLAI 149 (266)
Q Consensus 81 ~~~~iiiatiP~~-iiG~~~~~~i~~~~~~~-~~~i~~~lii~gilL~~~d~~~~~~~~-~~~~~~~~~~a~ 149 (266)
.+.+++++.+-++ +.|..++++-.+.+..- ...-..+..++-+.+|-.|++.++++. ++.++.+++++.
T Consensus 130 ~w~Mli~G~ivtA~i~g~lL~~fs~~rLi~v~~~~a~i~~~l~~~A~wg~E~r~~~~~~~~~~~~~~f~~a~ 201 (402)
T pfam03209 130 MYVMLLVGIIVSAITVGWLLADFSPARLIQVIQGVALATMVLNVIALWKQEARRPSRPREEPRPEPSFLEAW 201 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 999999999999999999756469999999999999999999999983566677554567777896599999
No 30
>pfam02588 DUF161 Uncharacterized BCR, YitT family COG1284. This is probably a bacterial ABC transporter permease (personal obs:Yeats C).
Probab=29.28 E-value=36 Score=13.79 Aligned_cols=56 Identities=20% Similarity=0.180 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45477889987442103568889999999726888999999999999999999986
Q gi|254780593|r 146 PLAIKIGLFQCIAMIPGTSRSGATITGALILGADKRSAAEFSFFIAIPTIIGACVL 201 (266)
Q Consensus 146 ~~a~~IGl~Q~lAliPGiSRSG~TI~~~l~lG~~r~~A~~fSFllsiP~i~gA~~l 201 (266)
-..++.|+.-.+.+.||.|-.|.+..+-......+.+.....+...+|....+...
T Consensus 7 ~G~~i~a~g~~~~~~~~~~~gG~~~la~~i~~~~~~~~g~~~~~~n~~l~~~~~~~ 62 (80)
T pfam02588 7 LGGLLLGLGIGLFLRPGLSTGGTDGLALILSKKFGISIGIILLIINIPLLILGLLF 62 (80)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998899998558876409899999999979988898999989999999999
No 31
>PRK09664 tryptophan permease TnaB; Provisional
Probab=28.31 E-value=38 Score=13.68 Aligned_cols=17 Identities=12% Similarity=0.082 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 89876531125542344
Q gi|254780593|r 86 FLGFFPTVVCGFFAYNF 102 (266)
Q Consensus 86 iiatiP~~iiG~~~~~~ 102 (266)
+.+++|..+.-+-++..
T Consensus 195 i~~alPv~~tSFGfh~~ 211 (415)
T PRK09664 195 IFMALPVCLASFGFHGN 211 (415)
T ss_pred HHHHHHHHHHHHCCCCC
T ss_conf 99998999997017773
No 32
>PRK00816 rnfD electron transport complex protein RnfD; Reviewed
Probab=25.44 E-value=42 Score=13.35 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 7998898765311255423444201457831002455568899999996
Q gi|254780593|r 82 TITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITLIIGGFILLLVDR 130 (266)
Q Consensus 82 ~~~iiiatiP~~iiG~~~~~~i~~~~~~~~~~i~~~lii~gilL~~~d~ 130 (266)
+|..++++..++++|--.+.-+..+.+ |+..+|.+.+....=...+.+
T Consensus 94 ~W~~~iG~~faIvigK~vfGGlG~N~f-NPAlvgrafl~isfP~~Mt~w 141 (351)
T PRK00816 94 WWMIVLGTVFAVIIAKQLYGGLGQNPF-NPAMIGYVVLLISFPVQMTSW 141 (351)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHCCC
T ss_conf 799999999999999884277787846-889999999999727875277
No 33
>PRK10655 potE putrescine transporter; Provisional
Probab=24.78 E-value=43 Score=13.27 Aligned_cols=15 Identities=20% Similarity=0.098 Sum_probs=5.4
Q ss_pred HHHHHHHHHHCCCCH
Q ss_conf 998756531020742
Q gi|254780593|r 13 GVVEGVTEFIPVSST 27 (266)
Q Consensus 13 giiQGiTEfLPISSs 27 (266)
+..+-.+.++|...+
T Consensus 105 ~~~~y~~~~~~~~~~ 119 (438)
T PRK10655 105 SAVGYGTELFGATLS 119 (438)
T ss_pred HHHHHHHHHHCCCCC
T ss_conf 999999998165663
No 34
>pfam01654 Bac_Ubq_Cox Bacterial Cytochrome Ubiquinol Oxidase. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II
Probab=24.05 E-value=45 Score=13.19 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 0024555688999999963200244433320244547788998744210356888
Q gi|254780593|r 113 IIHITLIIGGFILLLVDRLKFESKYFHIENYPIPLAIKIGLFQCIAMIPGTSRSG 167 (266)
Q Consensus 113 ~i~~~lii~gilL~~~d~~~~~~~~~~~~~~~~~~a~~IGl~Q~lAliPGiSRSG 167 (266)
++..+.+.++.+..-.-..+--|++ ++--.|.++.+|+.=++...|..==+|
T Consensus 179 ~~~aa~~~g~~~v~gvsA~~llr~~---~~~~~r~~~~~~~~~~~i~~~~~~~~G 230 (430)
T pfam01654 179 TVLAAYLTGAFFVAGVSAWYLLRGR---HVDFARKSLRIALVVALIAAPLQIFLG 230 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999555---458999999999999999999999999
No 35
>CHL00190 psaM photosystem I subunit XII; Provisional
Probab=23.46 E-value=46 Score=13.11 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 499999999999999999999
Q gi|254780593|r 215 GKEIIIGFMASFITSLLVIRS 235 (266)
Q Consensus 215 ~~~~~ig~~~sfi~~~~~i~~ 235 (266)
..+..++.+.|++++.+++|.
T Consensus 4 dsqi~vAl~~Al~t~iLAirL 24 (30)
T CHL00190 4 DSQIFVALFLALVTGILAIRL 24 (30)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 879999999999998999997
No 36
>PRK11562 nitrite transporter NirC; Provisional
Probab=23.13 E-value=47 Score=13.07 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHCCHHH-HHH-------HHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 4547788998744210356-888-------999999972688899999999999
Q gi|254780593|r 146 PLAIKIGLFQCIAMIPGTS-RSG-------ATITGALILGADKRSAAEFSFFIA 191 (266)
Q Consensus 146 ~~a~~IGl~Q~lAliPGiS-RSG-------~TI~~~l~lG~~r~~A~~fSFlls 191 (266)
..++.--..=|+|++=+.+ ||. ..|.+--..|+++.-|--|-+=++
T Consensus 155 ~rGIlCN~lVcLAVw~~~~~~~~~Kii~i~~pI~~FVa~GFEHsVANM~~ip~g 208 (268)
T PRK11562 155 FKGALCNWLVCLAIWMAIRTEGAAKFIAIWWCLLAFIASGYEHSVANMTLFALS 208 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999888899999999999734334799999999999982740778999999999
No 37
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=23.05 E-value=47 Score=13.06 Aligned_cols=52 Identities=13% Similarity=0.241 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 02279988987653112554234442014578310024555688999999963200
Q gi|254780593|r 79 RHFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITLIIGGFILLLVDRLKFE 134 (266)
Q Consensus 79 ~~~~~~iiiatiP~~iiG~~~~~~i~~~~~~~~~~i~~~lii~gilL~~~d~~~~~ 134 (266)
--+...--++++-+.++|..+.+ |. .+....++.++++.|+++.-...++.+
T Consensus 58 vAYAiWsGvG~~~itlig~~~F~---E~-l~~~~~~gi~lIi~GVv~l~~gs~~a~ 109 (120)
T PRK10452 58 VAYALWEGIGILFITLFSVLLFD---ES-LSLMKIAGLTTLVAGIVLIKSGTRKAR 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC---CC-CCHHHHHHHHHHHHHHHEEECCCCCCC
T ss_conf 99999998999999999999967---98-979999999999987840424785565
No 38
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=21.52 E-value=50 Score=12.87 Aligned_cols=31 Identities=10% Similarity=0.174 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999998188701476689999999999
Q gi|254780593|r 232 VIRSLFQVIAKRGYTPFALWRILIGFVGLFL 262 (266)
Q Consensus 232 ~i~~ll~~~~~~~l~~F~~Yri~lG~~~l~~ 262 (266)
..++..++.+-.+..+...|.++.=....++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~y~iLIi~FtyFy 296 (399)
T PRK12417 266 GISDDMPMLSFGSPVGISVYLVLQMLLSYFF 296 (399)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8999999718998479999999999999999
No 39
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family; InterPro: IPR004648 Oligopeptide transporter OPT superfamily has two main branches. One branch contains a tetrapeptide transporter demonstrated experimentally in three different species of yeast. The other family contains EspB, a protein required for normal rather than delayed sporulation after cellular aggregation; its role is unknown but is compatible with transport of a signalling molecule. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches..
Probab=21.35 E-value=28 Score=14.48 Aligned_cols=108 Identities=13% Similarity=0.099 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHH-HHHH
Q ss_conf 831002455568899999996320024443332024454778899874421035688899999997268889999-9999
Q gi|254780593|r 110 EMIIIHITLIIGGFILLLVDRLKFESKYFHIENYPIPLAIKIGLFQCIAMIPGTSRSGATITGALILGADKRSAA-EFSF 188 (266)
Q Consensus 110 ~~~~i~~~lii~gilL~~~d~~~~~~~~~~~~~~~~~~a~~IGl~Q~lAliPGiSRSG~TI~~~l~lG~~r~~A~-~fSF 188 (266)
+...+-+++++.-+.|+=.--.+-..+. . -.+|...-+++|- ++||= =..+.----.||.-+.-+ .|
T Consensus 454 PvWgl~v~lif~~vfliP~~I~qA~Tni-~-~GLNv~~EfivGY-----~lpGr---Pla~MifKtfGYi~~~Qa~~f-- 521 (716)
T TIGR00727 454 PVWGLVVALIFAIVFLIPVTIVQATTNI-S-LGLNVLTEFIVGY-----VLPGR---PLAMMIFKTFGYITDGQAVAF-- 521 (716)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCC-H-HHHHHHHHHHHHH-----CCCCC---HHHHHHHHHHCCCCCCHHHHH--
T ss_conf 6456788899999999678987664030-2-2368888888741-----48782---799999887500234057999--
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999998632211110---00000499999999999999999999999998
Q gi|254780593|r 189 FIAIPTIIGACVLDFYKNYNV---IVNNIGKEIIIGFMASFITSLLVIRSLFQVIA 241 (266)
Q Consensus 189 llsiP~i~gA~~l~~~~~~~~---~~~~~~~~~~ig~~~sfi~~~~~i~~ll~~~~ 241 (266)
+.=+ |..|. +....+..=.++.+.+-+|-+..++|-+.=++
T Consensus 522 ---------v~dl---K~gHYmKipPr~lF~~Q~~~~i~~~fV~igVL~Wa~gnId 565 (716)
T TIGR00727 522 ---------VSDL---KLGHYMKIPPRALFYAQFVATIWQIFVQIGVLDWALGNID 565 (716)
T ss_pred ---------HHHC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------9733---2126367864789999999999999998777755563033
No 40
>KOG3988 consensus
Probab=20.53 E-value=35 Score=13.90 Aligned_cols=65 Identities=22% Similarity=0.356 Sum_probs=29.6
Q ss_pred HCCHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 210356888999999972-------688899999999999999999998---6322111100000049999999999999
Q gi|254780593|r 159 MIPGTSRSGATITGALIL-------GADKRSAAEFSFFIAIPTIIGACV---LDFYKNYNVIVNNIGKEIIIGFMASFIT 228 (266)
Q Consensus 159 liPGiSRSG~TI~~~l~l-------G~~r~~A~~fSFllsiP~i~gA~~---l~~~~~~~~~~~~~~~~~~ig~~~sfi~ 228 (266)
.+-|+-|||.|..-|++- |-+- +-||-+++--. ..-.+..........-+.+-..+.||+.
T Consensus 74 FiGGVPRSGTTLMRAmLDAHPdVRCGeET---------rviPriL~lr~~W~ks~ke~~rl~eaGvT~EV~d~AisaFil 144 (378)
T KOG3988 74 FIGGVPRSGTTLMRAMLDAHPDVRCGEET---------RVIPRILALRSGWSKSEKEWLRLQEAGVTDEVLDSAISAFIL 144 (378)
T ss_pred EECCCCCCCHHHHHHHHHCCCCCCCCCCC---------EEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 87377787127999987159876558642---------216899999987513127675443036539999999999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780593|r 229 SLLV 232 (266)
Q Consensus 229 ~~~~ 232 (266)
-+++
T Consensus 145 EIia 148 (378)
T KOG3988 145 EIIA 148 (378)
T ss_pred HHHH
T ss_conf 9998
No 41
>PRK08383 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=20.49 E-value=53 Score=12.73 Aligned_cols=17 Identities=35% Similarity=0.292 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHCCHH
Q ss_conf 54778899874421035
Q gi|254780593|r 147 LAIKIGLFQCIAMIPGT 163 (266)
Q Consensus 147 ~a~~IGl~Q~lAliPGi 163 (266)
|.-..=++....+-||+
T Consensus 106 d~~~t~lansITLTPGT 122 (167)
T PRK08383 106 DAQYTILSNSITLTPGT 122 (167)
T ss_pred HHHHHHHHHHHCCCCCE
T ss_conf 39899998633168977
Done!