RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780593|ref|YP_003065006.1| undecaprenyl pyrophosphate
phosphatase [Candidatus Liberibacter asiaticus str. psy62]
         (266 letters)



>gnl|CDD|145692 pfam02673, BacA, Bacitracin resistance protein BacA.  Bacitracin
           resistance protein (BacA) is a putative undecaprenol
           kinase. BacA confers resistance to bacitracin, probably
           by phosphorylation of undecaprenol.
          Length = 255

 Score =  223 bits (571), Expect = 4e-59
 Identities = 100/257 (38%), Positives = 163/257 (63%), Gaps = 9/257 (3%)

Query: 8   IALILGVVEGVTEFIPVSSTAHLLLVSRLLG--ADLGSSFIVLVQLGAVSALLYVYFGRI 65
            A+ILG+V+G+TEF+P+SST HL+LVS LLG  +D G +F V++QLG + A+L  +   I
Sbjct: 1   QAIILGIVQGLTEFLPISSTGHLILVSHLLGWDSDPGLAFDVVIQLGTILAVLVYFRKDI 60

Query: 66  LSIFVSFPFSA----AARHFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITLIIG 121
           L +      S       R   + + +G  P  V G    +FI+++L    ++I I LI+G
Sbjct: 61  LRLLRGLLRSLRRDKPDRRLLLLIIIGTIPAGVVGLLFKDFIEALLR-SPVVIAIALIVG 119

Query: 122 GFILLLVDRLKFESKYFHIENYPIPLAIKIGLFQCIAMIPGTSRSGATITGALILGADKR 181
           G +LLL +RL    K   +++  +  A+ IGL Q +A+IPG SRSGATIT  L+LG D+ 
Sbjct: 120 GLLLLLAERLG--KKRRTLDDISLKDALLIGLAQALALIPGVSRSGATITAGLLLGLDRE 177

Query: 182 SAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEIIIGFMASFITSLLVIRSLFQVIA 241
           +AA FSF +AIP I+GA +L+  K ++++  +    +++GF+ +F+ +LL I+ L + + 
Sbjct: 178 AAARFSFLLAIPAILGAGLLELLKLFDLLSADDLGPLLVGFIVAFVVALLAIKWLLRFLK 237

Query: 242 KRGYTPFALWRILIGFV 258
           +  + PFA++RI++G +
Sbjct: 238 RHSFKPFAIYRIILGIL 254


>gnl|CDD|32151 COG1968, BacA, Uncharacterized bacitracin resistance protein
           [Defense mechanisms].
          Length = 270

 Score =  189 bits (483), Expect = 5e-49
 Identities = 104/270 (38%), Positives = 168/270 (62%), Gaps = 6/270 (2%)

Query: 1   MLRYSIIIALILGVVEGVTEFIPVSSTAHLLLVSRLLG-ADLGSSFIVLVQLGAVSALLY 59
           M    ++ A+ILG+VEG+TEF+P+SST HL+LV  LLG +D G SF +++QLGA+ A++ 
Sbjct: 1   MDMMELLQAIILGIVEGITEFLPISSTGHLILVGHLLGFSDAGKSFEIVIQLGAILAVVV 60

Query: 60  VYFGRILSIFVSFPFSAAAR----HFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIH 115
            ++  +L +   F              + + +   P VV G    +FIKS LF    ++ 
Sbjct: 61  YFWNDLLRLLKGFRLKTDRESRRFRLWLKILVATIPAVVLGLLFKDFIKSHLF-NPRVVA 119

Query: 116 ITLIIGGFILLLVDRLKFESKYFHIENYPIPLAIKIGLFQCIAMIPGTSRSGATITGALI 175
           I LI+GG +L+L ++L  + +   +++  +  A+ IGL QC+A+IPGTSRSGATI+G L+
Sbjct: 120 IALIVGGILLILAEKLNKKPRLRDLDDLTLRDALIIGLAQCLALIPGTSRSGATISGGLL 179

Query: 176 LGADKRSAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEIIIGFMASFITSLLVIRS 235
           LG  + +AAEFSF +AIP + GA  LD +K+ + +       +++GF+ +F+ SL+ I+ 
Sbjct: 180 LGLSREAAAEFSFLLAIPAMFGASALDLFKSGDALSAADLPILLVGFIVAFVVSLIAIKF 239

Query: 236 LFQVIAKRGYTPFALWRILIGFVGLFLEIF 265
           L + I +  + PFA++RI++G V L L   
Sbjct: 240 LLRFIKRHSFIPFAIYRIVLGIVVLVLLFI 269


>gnl|CDD|39564 KOG4363, KOG4363, KOG4363, Putative growth response protein [Signal
           transduction mechanisms].
          Length = 270

 Score = 28.5 bits (63), Expect = 2.2
 Identities = 12/51 (23%), Positives = 21/51 (41%)

Query: 212 NNIGKEIIIGFMASFITSLLVIRSLFQVIAKRGYTPFALWRILIGFVGLFL 262
           +  G   II F+A  +T  LV  ++++  ++        W   I F G   
Sbjct: 209 SGGGLGEIIAFLAPQVTKNLVYNTVYEYASRDFKLYPRSWIPKIFFAGGNT 259


>gnl|CDD|32786 COG2966, COG2966, Uncharacterized conserved protein [Function
           unknown].
          Length = 250

 Score = 26.7 bits (59), Expect = 6.4
 Identities = 19/92 (20%), Positives = 30/92 (32%)

Query: 35  RLLGADLGSSFIVLVQLGAVSALLYVYFGRILSIFVSFPFSAAARHFTITLFLGFFPTVV 94
            LL A L ++   L+  G     L  +F  +L   +    S           L  F   +
Sbjct: 128 VLLMAGLAAAAFALLFGGGWLDFLIAFFAGLLGFLLRQYLSRKGNPDFFFEVLASFIASI 187

Query: 95  CGFFAYNFIKSILFKEMIIIHITLIIGGFILL 126
                 +    I    +II  I L++ G  L 
Sbjct: 188 VAVLFGSLGLGITPDALIIGSIMLLVPGVPLT 219


>gnl|CDD|29437 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in
           glycolysis, catalyzes the phosphorylation of
           fructose-6-phosphate to fructose-1,6-biphosphate. The
           members belong to PFK family that includes ATP- and
           pyrophosphate (PPi)- dependent phosphofructokinases.
           Some members evolved by gene duplication and thus have a
           large C-terminal/N-terminal extension comprising a
           second PFK domain. Generally, ATP-PFKs are allosteric
           homotetramers, and  PPi-PFKs are dimeric and
           nonallosteric except for plant PPi-PFKs which are
           allosteric heterotetramers..
          Length = 338

 Score = 26.4 bits (58), Expect = 9.5
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 3   RYSIIIALILGVVEGVTEFIPVSSTAHLL--LVSRLLGADLGSSFIVLVQLGA 53
           R+ I+I     V EG  +FIP   T  LL  LV   LG D  ++ +  VQ G 
Sbjct: 222 RHGIVI-----VAEGAIDFIPKPITEKLLAKLVEERLGFDTRATVLGHVQRGG 269


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.335    0.151    0.445 

Gapped
Lambda     K      H
   0.267   0.0753    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,376,372
Number of extensions: 199580
Number of successful extensions: 1202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1165
Number of HSP's successfully gapped: 179
Length of query: 266
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 174
Effective length of database: 4,275,709
Effective search space: 743973366
Effective search space used: 743973366
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 56 (25.3 bits)