RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780593|ref|YP_003065006.1| undecaprenyl pyrophosphate phosphatase [Candidatus Liberibacter asiaticus str. psy62] (266 letters) >gnl|CDD|145692 pfam02673, BacA, Bacitracin resistance protein BacA. Bacitracin resistance protein (BacA) is a putative undecaprenol kinase. BacA confers resistance to bacitracin, probably by phosphorylation of undecaprenol. Length = 255 Score = 223 bits (571), Expect = 4e-59 Identities = 100/257 (38%), Positives = 163/257 (63%), Gaps = 9/257 (3%) Query: 8 IALILGVVEGVTEFIPVSSTAHLLLVSRLLG--ADLGSSFIVLVQLGAVSALLYVYFGRI 65 A+ILG+V+G+TEF+P+SST HL+LVS LLG +D G +F V++QLG + A+L + I Sbjct: 1 QAIILGIVQGLTEFLPISSTGHLILVSHLLGWDSDPGLAFDVVIQLGTILAVLVYFRKDI 60 Query: 66 LSIFVSFPFSA----AARHFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHITLIIG 121 L + S R + + +G P V G +FI+++L ++I I LI+G Sbjct: 61 LRLLRGLLRSLRRDKPDRRLLLLIIIGTIPAGVVGLLFKDFIEALLR-SPVVIAIALIVG 119 Query: 122 GFILLLVDRLKFESKYFHIENYPIPLAIKIGLFQCIAMIPGTSRSGATITGALILGADKR 181 G +LLL +RL K +++ + A+ IGL Q +A+IPG SRSGATIT L+LG D+ Sbjct: 120 GLLLLLAERLG--KKRRTLDDISLKDALLIGLAQALALIPGVSRSGATITAGLLLGLDRE 177 Query: 182 SAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEIIIGFMASFITSLLVIRSLFQVIA 241 +AA FSF +AIP I+GA +L+ K ++++ + +++GF+ +F+ +LL I+ L + + Sbjct: 178 AAARFSFLLAIPAILGAGLLELLKLFDLLSADDLGPLLVGFIVAFVVALLAIKWLLRFLK 237 Query: 242 KRGYTPFALWRILIGFV 258 + + PFA++RI++G + Sbjct: 238 RHSFKPFAIYRIILGIL 254 >gnl|CDD|32151 COG1968, BacA, Uncharacterized bacitracin resistance protein [Defense mechanisms]. Length = 270 Score = 189 bits (483), Expect = 5e-49 Identities = 104/270 (38%), Positives = 168/270 (62%), Gaps = 6/270 (2%) Query: 1 MLRYSIIIALILGVVEGVTEFIPVSSTAHLLLVSRLLG-ADLGSSFIVLVQLGAVSALLY 59 M ++ A+ILG+VEG+TEF+P+SST HL+LV LLG +D G SF +++QLGA+ A++ Sbjct: 1 MDMMELLQAIILGIVEGITEFLPISSTGHLILVGHLLGFSDAGKSFEIVIQLGAILAVVV 60 Query: 60 VYFGRILSIFVSFPFSAAAR----HFTITLFLGFFPTVVCGFFAYNFIKSILFKEMIIIH 115 ++ +L + F + + + P VV G +FIKS LF ++ Sbjct: 61 YFWNDLLRLLKGFRLKTDRESRRFRLWLKILVATIPAVVLGLLFKDFIKSHLF-NPRVVA 119 Query: 116 ITLIIGGFILLLVDRLKFESKYFHIENYPIPLAIKIGLFQCIAMIPGTSRSGATITGALI 175 I LI+GG +L+L ++L + + +++ + A+ IGL QC+A+IPGTSRSGATI+G L+ Sbjct: 120 IALIVGGILLILAEKLNKKPRLRDLDDLTLRDALIIGLAQCLALIPGTSRSGATISGGLL 179 Query: 176 LGADKRSAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEIIIGFMASFITSLLVIRS 235 LG + +AAEFSF +AIP + GA LD +K+ + + +++GF+ +F+ SL+ I+ Sbjct: 180 LGLSREAAAEFSFLLAIPAMFGASALDLFKSGDALSAADLPILLVGFIVAFVVSLIAIKF 239 Query: 236 LFQVIAKRGYTPFALWRILIGFVGLFLEIF 265 L + I + + PFA++RI++G V L L Sbjct: 240 LLRFIKRHSFIPFAIYRIVLGIVVLVLLFI 269 >gnl|CDD|39564 KOG4363, KOG4363, KOG4363, Putative growth response protein [Signal transduction mechanisms]. Length = 270 Score = 28.5 bits (63), Expect = 2.2 Identities = 12/51 (23%), Positives = 21/51 (41%) Query: 212 NNIGKEIIIGFMASFITSLLVIRSLFQVIAKRGYTPFALWRILIGFVGLFL 262 + G II F+A +T LV ++++ ++ W I F G Sbjct: 209 SGGGLGEIIAFLAPQVTKNLVYNTVYEYASRDFKLYPRSWIPKIFFAGGNT 259 >gnl|CDD|32786 COG2966, COG2966, Uncharacterized conserved protein [Function unknown]. Length = 250 Score = 26.7 bits (59), Expect = 6.4 Identities = 19/92 (20%), Positives = 30/92 (32%) Query: 35 RLLGADLGSSFIVLVQLGAVSALLYVYFGRILSIFVSFPFSAAARHFTITLFLGFFPTVV 94 LL A L ++ L+ G L +F +L + S L F + Sbjct: 128 VLLMAGLAAAAFALLFGGGWLDFLIAFFAGLLGFLLRQYLSRKGNPDFFFEVLASFIASI 187 Query: 95 CGFFAYNFIKSILFKEMIIIHITLIIGGFILL 126 + I +II I L++ G L Sbjct: 188 VAVLFGSLGLGITPDALIIGSIMLLVPGVPLT 219 >gnl|CDD|29437 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.. Length = 338 Score = 26.4 bits (58), Expect = 9.5 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 7/53 (13%) Query: 3 RYSIIIALILGVVEGVTEFIPVSSTAHLL--LVSRLLGADLGSSFIVLVQLGA 53 R+ I+I V EG +FIP T LL LV LG D ++ + VQ G Sbjct: 222 RHGIVI-----VAEGAIDFIPKPITEKLLAKLVEERLGFDTRATVLGHVQRGG 269 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.335 0.151 0.445 Gapped Lambda K H 0.267 0.0753 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,376,372 Number of extensions: 199580 Number of successful extensions: 1202 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1165 Number of HSP's successfully gapped: 179 Length of query: 266 Length of database: 6,263,737 Length adjustment: 92 Effective length of query: 174 Effective length of database: 4,275,709 Effective search space: 743973366 Effective search space used: 743973366 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 56 (25.3 bits)