RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780593|ref|YP_003065006.1| undecaprenyl pyrophosphate
phosphatase [Candidatus Liberibacter asiaticus str. psy62]
         (266 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 46/250 (18%), Positives = 74/250 (29%), Gaps = 92/250 (36%)

Query: 7   IIALILGVVEGVTEFIPVSSTAHLLLVSRLLGADLGSSFIVLVQLGAVSALLYVYF---- 62
           ++ L L   E    ++   +  H L  ++LL  +  +       L     L+  Y     
Sbjct: 83  VLNLCLTEFE--NCYLE-GNDIHAL-AAKLLQENDTT-------LVKTKELIKNYITARI 131

Query: 63  ---GRILSIFVSFPFSAAA-RHFTI-TLFLGFFPTVVCGFFAYNFIKSILFKEMIIIHIT 117
                      S  F A    +  +  +F G   T               F+E+  ++ T
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY------------FEELRDLYQT 179

Query: 118 L--IIGGFILLLVDRL-----------KFESKYFHI------------ENY----PI--P 146
              ++G  I    + L           K  ++  +I            ++Y    PI  P
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239

Query: 147 LAIKIGLFQ-------CIAM--IPGTSR---SGAT------ITGALILGADK-------- 180
           L   IG+ Q          +   PG  R    GAT      +T   I   D         
Sbjct: 240 L---IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV 296

Query: 181 RSAAEFSFFI 190
           R A    FFI
Sbjct: 297 RKAITVLFFI 306



 Score = 29.9 bits (67), Expect = 0.61
 Identities = 21/97 (21%), Positives = 30/97 (30%), Gaps = 30/97 (30%)

Query: 18  VTEFIPVSS---TAHLLLVSRLLGADLGSSFIVLVQLGAVSALLY-VY--F-GR------ 64
              F+PV+S   +  L+  S L+  DL  + +          +   VY  F G       
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF----NAKDIQIPVYDTFDGSDLRVLS 472

Query: 65  --ILS-----IF---VSFPFSAAARHFTITLFLGFFP 91
             I       I    V +        F  T  L F P
Sbjct: 473 GSISERIVDCIIRLPVKWE---TTTQFKATHILDFGP 506


>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE,
           visfatin, beryllium fluoride, nicotinamide
           D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo
           sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A*
           2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A
           2g95_A 2g96_A* 2g97_A* 3g8e_A*
          Length = 484

 Score = 27.7 bits (61), Expect = 3.0
 Identities = 16/75 (21%), Positives = 28/75 (37%)

Query: 160 IPGTSRSGATITGALILGADKRSAAEFSFFIAIPTIIGACVLDFYKNYNVIVNNIGKEII 219
           +PG S   A  +     G D    A         ++  + V D Y  YN      G+++ 
Sbjct: 237 VPGYSVPAAEHSTITAWGKDHEKDAFEHIVTQFSSVPVSVVSDSYDIYNACEKIWGEDLR 296

Query: 220 IGFMASFITSLLVIR 234
              ++    + L+IR
Sbjct: 297 HLIVSRSTQAPLIIR 311


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.335    0.151    0.445 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,318,664
Number of extensions: 106067
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 22
Length of query: 266
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 175
Effective length of database: 3,487,026
Effective search space: 610229550
Effective search space used: 610229550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 56 (25.7 bits)