RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780594|ref|YP_003065007.1| Glutathione S-transferase
domain protein [Candidatus Liberibacter asiaticus str. psy62]
         (230 letters)



>gnl|CDD|162274 TIGR01262, maiA, maleylacetoacetate isomerase.
          Maleylacetoacetate isomerase is an enzyme of tyrosine
          and phenylalanine catabolism. It requires glutathione
          and belongs by homology to the zeta family of
          glutathione S-transferases. The enzyme (EC 5.2.1.2) is
          described as active also on maleylpyruvate, and the
          example from a Ralstonia sp. catabolic plasmid is
          described as a maleylpyruvate isomerase involved in
          gentisate catabolism.
          Length = 210

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 15/101 (14%)

Query: 3  ILYHYPLSSSSRFIRLILS----EYEF-TTDMIEEFPWGKRR--EFLELNPSGTLPVYID 55
           LY Y  SS S  +R+ L+    +YE+   +++ +   G++R  EFL LNP G +P    
Sbjct: 1  KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRD---GEQRSPEFLALNPQGLVPTLDI 57

Query: 56 EHMQALCGVFVISEYLDETYGAIAQKNRLLSTDPLQRAETR 96
          +  + L     I EYL+ETY        LL  DP++RA  R
Sbjct: 58 DG-EVLTQSLAIIEYLEETYPD----PPLLPADPIKRARVR 93


>gnl|CDD|181895 PRK09481, sspA, stringent starvation protein A; Provisional.
          Length = 211

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 23/206 (11%)

Query: 13  SRFIRLILSEYEFTTDMIEEFPWGKRREFLELNPSGTLPVYIDEHMQALCGVFVISEYLD 72
           S  +R++L+E   + ++ +       ++ ++LNP  ++P  +D  +  L    +I EYLD
Sbjct: 22  SHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDREL-TLYESRIIMEYLD 80

Query: 73  ETYGAIAQKNRLLSTDPLQRAETRRMIEWFMYQMEQDVTRPLAHERVYKLHMTTEQGGGS 132
           E +        L+   P+ R E+R M    M+++E+D          Y L      G  S
Sbjct: 81  ERF----PHPPLMPVYPVARGESRLM----MHRIEKD---------WYSLMNKIVNGSAS 123

Query: 133 PDSKVLRIARNNMREHIKYITWLIKSRSWIAGHHMSYADFAASATISILDYLG-EIDWDT 191
                   AR  +RE +  I  +   + +      S  D   +  +  L  LG E+    
Sbjct: 124 EADA----ARKQLREELLAIAPVFGEKPYFMSEEFSLVDCYLAPLLWRLPVLGIELSGPG 179

Query: 192 APIVKEWYQRMKSRPSFRPLLSERIR 217
           A  +K +  R+  R SF   L+E  R
Sbjct: 180 AKELKGYMTRVFERDSFLASLTEAER 205


>gnl|CDD|182533 PRK10542, PRK10542, glutathionine S-transferase; Provisional.
          Length = 201

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 38/177 (21%), Positives = 67/177 (37%), Gaps = 23/177 (12%)

Query: 39  REFLELNPSGTLPVYIDEHMQALCGVFVISEYLDETYGAIAQKNRLLSTDPLQRAETRRM 98
            ++L +NP G +P  + +    L     I +YL ++   +  +  L     L R  T   
Sbjct: 41  DDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADS---VPDRQLLAPVGSLSRYHT--- 94

Query: 99  IEWFMYQMEQDVTRPLAHERVYKLH--MTTEQGGGSPDSKVLRIARNNMREHIKYITWLI 156
           IEW  Y         +A E    LH   T      +P+       R  + +  +Y+   +
Sbjct: 95  IEWLNY---------IATE----LHKGFTPLFRPDTPEE-YKPTVRAQLEKKFQYVDEAL 140

Query: 157 KSRSWIAGHHMSYADFAASATISILDYLGEIDWDTAPIVKEWYQRMKSRPSFRPLLS 213
               WI G   + AD A   T+    Y  +++ +    +  + QR+  RP+    L 
Sbjct: 141 ADEQWICGQRFTIAD-AYLFTVLRWAYAVKLNLEGLEHIAAYMQRVAERPAVAAALK 196


>gnl|CDD|166036 PLN02395, PLN02395, glutathione S-transferase.
          Length = 215

 Score = 36.4 bits (84), Expect = 0.006
 Identities = 55/236 (23%), Positives = 98/236 (41%), Gaps = 50/236 (21%)

Query: 1   MSILYHYPLSSSSR--FIRLILSEYEFTT---DMIEEFPWGKRR--EFLELNPSGTLPVY 53
           M +  + P  +S +   + LI    EF T   D+++    G+ +  E+L L P G +PV 
Sbjct: 1   MVLKVYGPAFASPKRALVTLIEKGVEFETVPVDLMK----GEHKQPEYLALQPFGVVPVI 56

Query: 54  IDEHMQALCGVFVISEYLDETYGAIAQKNRLLSTDPLQRA-ETRRMIEWFMYQMEQDVTR 112
           +D   +      ++  Y        A+K R    D L +  E R  +E ++     DV  
Sbjct: 57  VDGDYKIFESRAIMRYY--------AEKYRSQGPDLLGKTIEERGQVEQWL-----DVEA 103

Query: 113 PLAHERVYKLH---MTTEQGGGSPDSKVLRIARNNMREHIK-YITWLIKSRSWIAGHHMS 168
              H  +  L    +   + G   D KV++ +   + + +  Y   L KS+ ++AG  +S
Sbjct: 104 TSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSK-YLAGDFVS 162

Query: 169 YADFAASATISILDYLGEIDWDTAPI-----------VKEWYQRMKSRPSFRPLLS 213
            AD A    +   +YL        PI           V  W+  + SRP+++ +L+
Sbjct: 163 LADLAH---LPFTEYL------VGPIGKAYLIKDRKHVSAWWDDISSRPAWKEVLA 209


>gnl|CDD|172475 PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase;
           Provisional.
          Length = 215

 Score = 34.7 bits (79), Expect = 0.020
 Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 29/179 (16%)

Query: 38  RREFLELNPSGTLPVYIDEHMQALCG----VF---VISEYLDETYGAIAQKNRLLSTDPL 90
           R EFL ++P+  +P  +D H  A  G    +F    I  YL E  G        LS +  
Sbjct: 40  RPEFLRISPNNKIPAIVD-HSPADGGEPLSLFESGAILLYLAEKTGL------FLSHETR 92

Query: 91  QRAETRRMIEWFMYQMEQDVTRPLAHERVYKLHMTTEQGGGSPDSKVLRIARNNMREHIK 150
           +RA T   ++W  +Q+      P+  +  +  H        +P +    I R  +     
Sbjct: 93  ERAAT---LQWLFWQVGG--LGPMLGQNHHFNH-------AAPQTIPYAIERYQVETQRL 140

Query: 151 Y--ITWLIKSRSWIAGHHMSYADFAASATISILDYLGEIDWDTAPIVKEWYQRMKSRPS 207
           Y  +   +++  W+ G + S AD A    ++       ID    P VK W++R++SRP+
Sbjct: 141 YHVLNKRLENSPWLGGENYSIADIACWPWVNAWTR-QRIDLAMYPAVKNWHERIRSRPA 198


>gnl|CDD|185068 PRK15113, PRK15113, glutathione S-transferase; Provisional.
          Length = 214

 Score = 31.1 bits (71), Expect = 0.23
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 67  ISEYLDETYGAIAQKNRLLSTDPLQRAETRRMIEW 101
           I+EYL+E +       R+   D   RA  R++  W
Sbjct: 75  IAEYLEERFAP-PAWERIYPADLQARARARQIQAW 108


>gnl|CDD|162528 TIGR01776, TonB-tbp-lbp, TonB-dependent lactoferrin and transferrin
           receptors.  This family of TonB-dependent receptors are
           responsible for import of iron from the mammalian iron
           carriers lactoferrin and transferrin across the outer
           membrane. These receptors are found only in bacteria
           which can infect mammals such as Moraxella, Mannheimia,
           Neisseria, Actinobacillus, Pasteurella, Haemophilus and
           Histophilus species.
          Length = 932

 Score = 28.2 bits (63), Expect = 1.6
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 49  TLPVYIDEHMQALCGVFVISEYLDETYGAIAQKNRLLSTDPLQRAETRRMIEW 101
              +    H  +L   F I +Y+D   G    K+   STD L  + T R + W
Sbjct: 581 PRKIKGSNHYISLNDNFTIGKYVDLGLGGRYDKHNFKSTDRLVYSGTYRNLSW 633


>gnl|CDD|184798 PRK14704, PRK14704, anaerobic ribonucleoside triphosphate
           reductase; Provisional.
          Length = 618

 Score = 28.2 bits (63), Expect = 2.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 188 DWDTAPIVKEWYQRMKSRPSFRPLLSERIR 217
           D D AP V++  +R K R    PL  E+I 
Sbjct: 141 DVDLAPYVRKTVERHKKRLQSYPLTKEQIE 170


>gnl|CDD|148394 pfam06762, DUF1222, Protein of unknown function (DUF1222).  This
           family, which includes bacterial and eukaryotic members,
           represents a conserved region located towards the
           C-terminal end of a number of hypothetical proteins of
           unknown function. These are possibly integral membrane
           proteins.
          Length = 371

 Score = 27.7 bits (62), Expect = 3.0
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 1   MSILYHYPL-SSSSRFIRLILSEYEFTT---DMIEEFPWGKRREFLELNP 46
           +S+L H P      RF+R  L  Y FTT   +  E   W +R    E  P
Sbjct: 316 LSLLAHNPFPDDPPRFVRARLYRYRFTTFAKERRETGQWWRRTLVGEYVP 365


>gnl|CDD|182405 PRK10357, PRK10357, putative glutathione S-transferase;
          Provisional.
          Length = 202

 Score = 26.6 bits (59), Expect = 5.2
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 10 SSSSRFIR---LILSEYEFTTDMIEEFPWGKRREFLELNPSGTLPVYIDEHMQALCGVFV 66
          S +S F+R   ++L E   T + + E P+       + NP G +P  + E  +      +
Sbjct: 6  SYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWFDSPI 65

Query: 67 ISEYLD 72
          I+EY++
Sbjct: 66 IAEYIE 71


>gnl|CDD|152387 pfam11952, DUF3469, Protein of unknown function (DUF3469).  This
          family of proteins are functionally uncharacterized.
          This protein is found in eukaryotes. Proteins in this
          family are typically between 108 to 439 amino acids in
          length.
          Length = 87

 Score = 26.5 bits (59), Expect = 6.3
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 32 EFPWGKRREFLELNPSGTLPVYIDEHMQALCGVFVISEYLDETYG 76
          +  W  RREF+E +     P   ++ +  L  V+    +L   Y 
Sbjct: 11 DKHWELRREFIERH-KDDYPTGREDRLLCLSQVWANHVFLGCRYP 54


>gnl|CDD|162033 TIGR00770, Dcu, anaerobic c4-dicarboxylate membrane transporter
           family protein.  These proteins are members of th
           C4-Dicarboxylate Uptake (Dcu) Family (TC 2.A.13). Most
           proteins in this family have 12 GES predicted
           transmembrane regions; however one member has 10
           experimentally determined transmembrane regions with
           both the N- and C-termini localized to the periplasm.
           The two Escherichia coli proteins, DcuA and DcuB,
           transport aspartate, malate, fumarate and succinate, and
           function as antiporters with any two of these
           substrates. Since DcuA is encoded in an operon with the
           gene for aspartase, and DcuB is encoded in an operon
           with the gene for fumarase, their physiological
           functions may be to catalyze aspartate:fumarate and
           fumarate:malate exchange during the anaerobic
           utilization of aspartate and fumarate, respectively.
          Length = 430

 Score = 26.2 bits (58), Expect = 7.7
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 16/75 (21%)

Query: 137 VLRIARNNMREHIKYITWLIKSRSWIAGHHMSYADFAASATISILDYLGEIDWDTAPIVK 196
           +++IA   +R + KYIT L  S ++                ++IL   G + + T P++ 
Sbjct: 69  LVQIAEKLLRRNPKYITILAPSVTY---------------FLTILAGTGHVVYSTLPVIA 113

Query: 197 EWYQRMKSRPSFRPL 211
           E  +    +P  RPL
Sbjct: 114 EVAKEQGIKPE-RPL 127


>gnl|CDD|132039 TIGR02994, ectoine_eutE, ectoine utilization protein EutE.  Members
           of this family, part of the succinylglutamate
           desuccinylase / aspartoacylase family (pfam04952),
           belong to ectoine utilization operons, as found in
           Sinorhizobium meliloti 1021 (where it the operon is
           known to be induced by ectoine), Mesorhizobium loti,
           Silicibacter pomeroyi, Agrobacterium tumefaciens, and
           Pseudomonas putida.
          Length = 325

 Score = 25.9 bits (57), Expect = 9.2
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 115 AHERVYKLHMTTEQGG-GSPDSKVLRIARNNMR 146
           A E + K+ +TTE GG G+  ++ ++IA+  +R
Sbjct: 196 AAEEMGKVFVTTELGGGGTASARTIKIAKRGVR 228


>gnl|CDD|129825 TIGR00742, yjbN, tRNA dihydrouridine synthase A.  Members of this
           family show a distant relationship to alpha/beta (TIM)
           barrel enzymes such as dihydroorotate dehydrogenase and
           glycolate oxidase.
          Length = 318

 Score = 25.9 bits (57), Expect = 9.5
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 12/53 (22%)

Query: 113 PLAHERVYKL-----HMTTEQGGGSPDSKVLRIARNNMREHIKYITWLIKSRS 160
           PL +ERVY+L     H+T E  GG  +S+        +++H+ ++  ++  R 
Sbjct: 180 PLRYERVYQLKKDFPHLTIEINGGIKNSE-------QIKQHLSHVDGVMVGRE 225


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0644    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,945,347
Number of extensions: 247813
Number of successful extensions: 450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 446
Number of HSP's successfully gapped: 21
Length of query: 230
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 140
Effective length of database: 4,049,753
Effective search space: 566965420
Effective search space used: 566965420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)