BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780594|ref|YP_003065007.1| Glutathione S-transferase
domain protein [Candidatus Liberibacter asiaticus str. psy62]
         (230 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780594|ref|YP_003065007.1| Glutathione S-transferase domain protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 230

 Score =  478 bits (1230), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 230/230 (100%), Positives = 230/230 (100%)

Query: 1   MSILYHYPLSSSSRFIRLILSEYEFTTDMIEEFPWGKRREFLELNPSGTLPVYIDEHMQA 60
           MSILYHYPLSSSSRFIRLILSEYEFTTDMIEEFPWGKRREFLELNPSGTLPVYIDEHMQA
Sbjct: 1   MSILYHYPLSSSSRFIRLILSEYEFTTDMIEEFPWGKRREFLELNPSGTLPVYIDEHMQA 60

Query: 61  LCGVFVISEYLDETYGAIAQKNRLLSTDPLQRAETRRMIEWFMYQMEQDVTRPLAHERVY 120
           LCGVFVISEYLDETYGAIAQKNRLLSTDPLQRAETRRMIEWFMYQMEQDVTRPLAHERVY
Sbjct: 61  LCGVFVISEYLDETYGAIAQKNRLLSTDPLQRAETRRMIEWFMYQMEQDVTRPLAHERVY 120

Query: 121 KLHMTTEQGGGSPDSKVLRIARNNMREHIKYITWLIKSRSWIAGHHMSYADFAASATISI 180
           KLHMTTEQGGGSPDSKVLRIARNNMREHIKYITWLIKSRSWIAGHHMSYADFAASATISI
Sbjct: 121 KLHMTTEQGGGSPDSKVLRIARNNMREHIKYITWLIKSRSWIAGHHMSYADFAASATISI 180

Query: 181 LDYLGEIDWDTAPIVKEWYQRMKSRPSFRPLLSERIRGLLPVSHYTNLDF 230
           LDYLGEIDWDTAPIVKEWYQRMKSRPSFRPLLSERIRGLLPVSHYTNLDF
Sbjct: 181 LDYLGEIDWDTAPIVKEWYQRMKSRPSFRPLLSERIRGLLPVSHYTNLDF 230


>gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 187

 Score = 29.3 bits (64), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 16/93 (17%)

Query: 86  STDPLQRAETRRMIEW--FMYQMEQDVTR-----PLAHERVYKLHMTTE-QGGGSPD--- 134
           S+DP+ R+E RR+IE       + + ++R     PL     +   ++ + Q GG+     
Sbjct: 44  SSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102

Query: 135 ---SKVLRIARNNMREHIKYITWLIKSRSWIAG 164
              S++LR  R NM+  ++ ++   K+ +WI G
Sbjct: 103 ANLSRILR-DRKNMKAKVQALSMEAKASAWIIG 134


>gi|254780134|ref|YP_003064547.1| phage-related integrase/recombinase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 348

 Score = 25.0 bits (53), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 21  SEYEFTTDMIEEFPWGKRREFLELNP 46
           S  +F T M   F W  R+E++ +NP
Sbjct: 132 SAIQFLTSMRVLFKWAVRQEYVAINP 157


>gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 622

 Score = 23.5 bits (49), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 123 HMTTEQGGGSPDSKVLRIARNNMREHIKYITWLIKSRS 160
           H    Q   +PDS    IA++   E +  I  L+ SRS
Sbjct: 44  HYGITQVVANPDSACFEIAKSVRSEWVLCIDGLVMSRS 81


>gi|254780717|ref|YP_003065130.1| zinc uptake ABC transporter [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 294

 Score = 22.7 bits (47), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 128 QGGGSPDSKVLRIARNNMREHIKYITWL 155
           +G  SP    LRI+   M E+   I WL
Sbjct: 52  KGASSPHEYSLRISEAMMLENADIIFWL 79


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.136    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,884
Number of Sequences: 1233
Number of extensions: 5561
Number of successful extensions: 11
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 8
length of query: 230
length of database: 328,796
effective HSP length: 71
effective length of query: 159
effective length of database: 241,253
effective search space: 38359227
effective search space used: 38359227
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)