HHsearch alignment for GI: 254780595 and conserved domain: COG1088
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=1.1e-42 Score=263.03 Aligned_cols=279 Identities=17% Similarity=0.175 Sum_probs=203.4
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHCC--CEEEEEE-----CCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHC--CCCEEEE
Q ss_conf 9399988-8888999999999889--8899996-----794463455644982898067864023465411--5632787
Q gi|254780595|r 1 MHLMIFG-AGYTGKFIADAALKVG--VYTCGTT-----RSVSNLLTLKHKGISPFLFADQKINNLLREKLY--FTTHIVQ 70 (289)
Q Consensus 1 MkIlI~G-aG~iG~~l~~~L~~~g--~~V~~~~-----r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~ 70 (289)
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh 80 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH 80 (340)
T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 93799657515778999999960997528997523315778788864069971588545547999999997448875998
Q ss_pred EECCCC----------CCCEEECCCCCHHHHHHHCC--CCCCCCCCEEECCCCCC--CCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 612444----------33100012210134432012--33433332010257621--23453211234311345544555
Q gi|254780595|r 71 CIKPSS----------EGDPCIISMSKDFYKFMPHV--KWIGYLSSTSIYGNREG--QWVDEHSFVHPISCVATQRFNAE 136 (289)
Q Consensus 71 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~--~~~i~~SS~~VYg~~~g--~~i~E~~~~~P~~~y~~~k~~~E 136 (289)
T Consensus 81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~~PsSPYSASKAasD 160 (340)
T COG1088 81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKAASD 160 (340)
T ss_pred ECHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 11001332233570553400028799999999984666207994152102566678887544799999997404455678
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCH-------HHHHHCCCC-CCCCCCCCEECCHHHHHHHHHHHHHHCC-CCCCC
Q ss_conf 54320012345676420347777898503-------444311345-4322211000102477779999999513-55786
Q gi|254780595|r 137 KEWLAITKKLNIKLAVLRLSGIYGPKRNP-------FIKIRQKNS-LRLVKKNQVFNRIRVEDVARCVIFLMTH-HLGGI 207 (289)
Q Consensus 137 ~~~~~~~~~~~~~~~ilR~~~iyGp~r~~-------~~~~~~g~~-~~~~~~~~~~~~ihv~Dva~~i~~l~~~-~~~~i 207 (289)
T Consensus 161 ~lVray~~TYglp~~ItrcSNNYGPyqfpEKlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~~Vl~kg~~GE~ 240 (340)
T COG1088 161 LLVRAYVRTYGLPATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVLTKGKIGET 240 (340)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCEEEEEEEHHHHHHHHHHHHCCCCCCE
T ss_conf 99999998719966984477776887671556679999997399985436985402058717578899999956867766
Q ss_pred EECCCCCHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCHHHHHHHCCCCEECHHHHH-HCCCCCCCCCHHHHHHHHH
Q ss_conf 1626843333899999999995579986---34310125682446553069451689999-7398448999999999999
Q gi|254780595|r 208 FNLSDDEPAPPQNVIMEAASLMKITPPL---EQCFDTANISPFTRFFYADNKRISNAKIK-SLGFQLLYPNYRISLKQLW 283 (289)
Q Consensus 208 yni~~~~~~s~~e~~~~i~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~is~~kl~-~lG~~p~~p~~~~gl~~~~ 283 (289)
T Consensus 241 YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~~V~DRpGHD--~RY----aid~~Ki~~eLgW~P~~-~fe~GlrkTv 313 (340)
T COG1088 241 YNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVEDRPGHD--RRY----AIDASKIKRELGWRPQE-TFETGLRKTV 313 (340)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHEEECCCCCCCC--CCE----EECHHHHHHHCCCCCCC-CHHHHHHHHH
T ss_conf 8717875200799999999986766511041247616789975--010----10667776542988678-8888999999
Q ss_pred HHH
Q ss_conf 975
Q gi|254780595|r 284 KEI 286 (289)
Q Consensus 284 ~~~ 286 (289)
T Consensus 314 ~WY 316 (340)
T COG1088 314 DWY 316 (340)
T ss_pred HHH
T ss_conf 999