HHsearch alignment for GI: 254780595 and conserved domain: COG1089
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].
Probab=99.93 E-value=1.2e-24 Score=160.19 Aligned_cols=277 Identities=15% Similarity=0.092 Sum_probs=193.4
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCEEEEEECCHH--HHH--HHHHCC------CEEEECCCCCCCHHHHHHH--CCCCEEE
Q ss_conf 999888-88899999999988988999967944--634--556449------8289806786402346541--1563278
Q gi|254780595|r 3 LMIFGA-GYTGKFIADAALKVGVYTCGTTRSVS--NLL--TLKHKG------ISPFLFADQKINNLLREKL--YFTTHIV 69 (289)
Q Consensus 3 IlI~Ga-G~iG~~l~~~L~~~g~~V~~~~r~~~--~~~--~l~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~v~ 69 (289)
T Consensus 5 ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~g-DLtD~~~l~r~l~~v~PdEIY 83 (345)
T COG1089 5 ALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYG-DLTDSSNLLRILEEVQPDEIY 83 (345)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHCCCCCCCCEEEEEEC-CCCCHHHHHHHHHHCCCHHHE
T ss_conf 9995445875389999998569489878603355776530111165557861799965-543568899999860944533
Q ss_pred EEECCCC----CCCEEE------CCCCCHHHHHH---HCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 7612444----331000------12210134432---0123343333201025762123453211234311345544555
Q gi|254780595|r 70 QCIKPSS----EGDPCI------ISMSKDFYKFM---PHVKWIGYLSSTSIYGNREGQWVDEHSFVHPISCVATQRFNAE 136 (289)
Q Consensus 70 ~~~~~~~----~~~~~~------~~~~~~~~~~~---~~~~~~i~~SS~~VYg~~~g~~i~E~~~~~P~~~y~~~k~~~E 136 (289)
T Consensus 84 NLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~TPFyPrSPYAvAKlYa~ 163 (345)
T COG1089 84 NLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAY 163 (345)
T ss_pred ECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 03432345530358640253100678899999997487660799656177606766675446899988977889998777
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCC----------HHHHHHCCCCCCC--CCCCCEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 5432001234567642034777789850----------3444311345432--221100010247777999999951355
Q gi|254780595|r 137 KEWLAITKKLNIKLAVLRLSGIYGPKRN----------PFIKIRQKNSLRL--VKKNQVFNRIRVEDVARCVIFLMTHHL 204 (289)
Q Consensus 137 ~~~~~~~~~~~~~~~ilR~~~iyGp~r~----------~~~~~~~g~~~~~--~~~~~~~~~ihv~Dva~~i~~l~~~~~ 204 (289)
T Consensus 164 W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~DYVe~mwlmLQq~~ 243 (345)
T COG1089 164 WITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEAMWLMLQQEE 243 (345)
T ss_pred HEEEEHHHHCCCEEECCEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 60301476347334311443378987753103389999999987066126874363310234316789999999974479
Q ss_pred CCCEECCCCCHHHHHHHHHHHHHHHCCCCC-----------------CCCCCCCCCCCHHHHHHHCCCCEECHHHHH-HC
Q ss_conf 786162684333389999999999557998-----------------634310125682446553069451689999-73
Q gi|254780595|r 205 GGIFNLSDDEPAPPQNVIMEAASLMKITPP-----------------LEQCFDTANISPFTRFFYADNKRISNAKIK-SL 266 (289)
Q Consensus 205 ~~iyni~~~~~~s~~e~~~~i~~~~g~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~is~~kl~-~l 266 (289)
T Consensus 244 PddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~tG~~~V~idp~~fRPaEVd~Ll----gdp~KA~~~L 319 (345)
T COG1089 244 PDDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVEIDPRYFRPAEVDLLL----GDPTKAKEKL 319 (345)
T ss_pred CCCEEEECCCEEEHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHC----CCHHHHHHHC
T ss_conf 984488527522399999999997085588730355311312456752699870106831255652----8878989970
Q ss_pred CCCCCCCCHHHHHHHHHHH
Q ss_conf 9844899999999999997
Q gi|254780595|r 267 GFQLLYPNYRISLKQLWKE 285 (289)
Q Consensus 267 G~~p~~p~~~~gl~~~~~~ 285 (289)
T Consensus 320 GW~~~~-~~~elv~~Mv~~ 337 (345)
T COG1089 320 GWRPEV-SLEELVREMVEA 337 (345)
T ss_pred CCCCCC-CHHHHHHHHHHH
T ss_conf 996666-799999999999