HHsearch alignment for GI: 254780595 and conserved domain: COG1089

>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].
Probab=99.93  E-value=1.2e-24  Score=160.19  Aligned_cols=277  Identities=15%  Similarity=0.092  Sum_probs=193.4

Q ss_pred             EEEECC-CHHHHHHHHHHHHCCCEEEEEECCHH--HHH--HHHHCC------CEEEECCCCCCCHHHHHHH--CCCCEEE
Q ss_conf             999888-88899999999988988999967944--634--556449------8289806786402346541--1563278
Q gi|254780595|r    3 LMIFGA-GYTGKFIADAALKVGVYTCGTTRSVS--NLL--TLKHKG------ISPFLFADQKINNLLREKL--YFTTHIV   69 (289)
Q Consensus         3 IlI~Ga-G~iG~~l~~~L~~~g~~V~~~~r~~~--~~~--~l~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~v~   69 (289)
T Consensus         5 ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~g-DLtD~~~l~r~l~~v~PdEIY   83 (345)
T COG1089           5 ALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYG-DLTDSSNLLRILEEVQPDEIY   83 (345)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHCCCCCCCCEEEEEEC-CCCCHHHHHHHHHHCCCHHHE
T ss_conf             9995445875389999998569489878603355776530111165557861799965-543568899999860944533


Q ss_pred             EEECCCC----CCCEEE------CCCCCHHHHHH---HCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             7612444----331000------12210134432---0123343333201025762123453211234311345544555
Q gi|254780595|r   70 QCIKPSS----EGDPCI------ISMSKDFYKFM---PHVKWIGYLSSTSIYGNREGQWVDEHSFVHPISCVATQRFNAE  136 (289)
Q Consensus        70 ~~~~~~~----~~~~~~------~~~~~~~~~~~---~~~~~~i~~SS~~VYg~~~g~~i~E~~~~~P~~~y~~~k~~~E  136 (289)
T Consensus        84 NLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~TPFyPrSPYAvAKlYa~  163 (345)
T COG1089          84 NLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAY  163 (345)
T ss_pred             ECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             03432345530358640253100678899999997487660799656177606766675446899988977889998777


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCC----------HHHHHHCCCCCCC--CCCCCEECCHHHHHHHHHHHHHHCCCC
Q ss_conf             5432001234567642034777789850----------3444311345432--221100010247777999999951355
Q gi|254780595|r  137 KEWLAITKKLNIKLAVLRLSGIYGPKRN----------PFIKIRQKNSLRL--VKKNQVFNRIRVEDVARCVIFLMTHHL  204 (289)
Q Consensus       137 ~~~~~~~~~~~~~~~ilR~~~iyGp~r~----------~~~~~~~g~~~~~--~~~~~~~~~ihv~Dva~~i~~l~~~~~  204 (289)
T Consensus       164 W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~DYVe~mwlmLQq~~  243 (345)
T COG1089         164 WITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEAMWLMLQQEE  243 (345)
T ss_pred             HEEEEHHHHCCCEEECCEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf             60301476347334311443378987753103389999999987066126874363310234316789999999974479


Q ss_pred             CCCEECCCCCHHHHHHHHHHHHHHHCCCCC-----------------CCCCCCCCCCCHHHHHHHCCCCEECHHHHH-HC
Q ss_conf             786162684333389999999999557998-----------------634310125682446553069451689999-73
Q gi|254780595|r  205 GGIFNLSDDEPAPPQNVIMEAASLMKITPP-----------------LEQCFDTANISPFTRFFYADNKRISNAKIK-SL  266 (289)
Q Consensus       205 ~~iyni~~~~~~s~~e~~~~i~~~~g~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~is~~kl~-~l  266 (289)
T Consensus       244 PddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~tG~~~V~idp~~fRPaEVd~Ll----gdp~KA~~~L  319 (345)
T COG1089         244 PDDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVEIDPRYFRPAEVDLLL----GDPTKAKEKL  319 (345)
T ss_pred             CCCEEEECCCEEEHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHC----CCHHHHHHHC
T ss_conf             984488527522399999999997085588730355311312456752699870106831255652----8878989970


Q ss_pred             CCCCCCCCHHHHHHHHHHH
Q ss_conf             9844899999999999997
Q gi|254780595|r  267 GFQLLYPNYRISLKQLWKE  285 (289)
Q Consensus       267 G~~p~~p~~~~gl~~~~~~  285 (289)
T Consensus       320 GW~~~~-~~~elv~~Mv~~  337 (345)
T COG1089         320 GWRPEV-SLEELVREMVEA  337 (345)
T ss_pred             CCCCCC-CHHHHHHHHHHH
T ss_conf             996666-799999999999