HHsearch alignment for GI: 254780595 and conserved domain: PRK09009
>PRK09009 C factor cell-cell signaling protein; Provisional.
Probab=98.98 E-value=9.5e-09 Score=69.42 Aligned_cols=198 Identities=14% Similarity=0.178 Sum_probs=104.7
Q ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEECCCCCCC--HHHHHHHCCCCEEEEEECCCCC
Q ss_conf 93999888-88899999999988988999967944634556449828980678640--2346541156327876124443
Q gi|254780595|r 1 MHLMIFGA-GYTGKFIADAALKVGVYTCGTTRSVSNLLTLKHKGISPFLFADQKIN--NLLREKLYFTTHIVQCIKPSSE 77 (289)
Q Consensus 1 MkIlI~Ga-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~ 77 (289)
T Consensus 1 mnVLITGas~GIG~aia~~l~~~~~~~~v~~~~~~~~~~~~~~~v~~~~~Dvt~~~~i~~~~~~~~~iD~linnAGi~~~ 80 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLETYPDATVHATYRHHKPDFRHDNVQWHALDVTDEAEIKQLSEQFTQLDWLINCVGMLHT 80 (235)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 97999755639999999999856998099997377654445798389987479999999999870877899976752446
Q ss_pred ----CCEEEC---------CCCCHHH----------HHH--HCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf ----310001---------2210134----------432--012334333320102576212345321123431134554
Q gi|254780595|r 78 ----GDPCII---------SMSKDFY----------KFM--PHVKWIGYLSSTSIYGNREGQWVDEHSFVHPISCVATQR 132 (289)
Q Consensus 78 ----~~~~~~---------~~~~~~~----------~~~--~~~~~~i~~SS~~VYg~~~g~~i~E~~~~~P~~~y~~~k 132 (289)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~l~~~~~~~iv~isS~~--g~-----i~~-~~~~g~~~Y~aSK 152 (235)
T PRK09009 81 QDKGPEKSLQSLDSDFFLQNITLNTLPSLLLAKHFTPLLKQSESARFAVISAKV--GS-----ISD-NRLGGWYSYRASK 152 (235)
T ss_pred CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE--CC-----CCC-CCCCCCHHHHHHH
T ss_conf 777764686778999999999886199999999999999860787640122234--15-----778-8888623669999
Q ss_pred HHHHHHHHHCCCCC-----CCCCCCCCCCCCCCCCCCHHHH-HHCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCC---
Q ss_conf 45555432001234-----5676420347777898503444-31134543222110001024777799999995135---
Q gi|254780595|r 133 FNAEKEWLAITKKL-----NIKLAVLRLSGIYGPKRNPFIK-IRQKNSLRLVKKNQVFNRIRVEDVARCVIFLMTHH--- 203 (289)
Q Consensus 133 ~~~E~~~~~~~~~~-----~~~~~ilR~~~iyGp~r~~~~~-~~~g~~~~~~~~~~~~~~ihv~Dva~~i~~l~~~~--- 203 (289)
T Consensus 153 aAl~~lt~~la~E~~~~~~~i~V~~i~PG~v~T~----m~~~~~~~----~p~~----r~~~PeeiA~~i~~L~s~~s~~ 220 (235)
T PRK09009 153 AALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTP----LSKPFQQN----VPKG----KLFTPEYVAQCLLGIIANATPA 220 (235)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC----CCCHHHHC----CCCC----CCCCHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999999764269968999814865671----23067857----9988----8829999999999997169723
Q ss_pred CCCCEECCCCCHHHH
Q ss_conf 578616268433338
Q gi|254780595|r 204 LGGIFNLSDDEPAPP 218 (289)
Q Consensus 204 ~~~iyni~~~~~~s~ 218 (289)
T Consensus 221 ~tG~~i~vdG~~~pW 235 (235)
T PRK09009 221 QSGSFLAYDGEELPW 235 (235)
T ss_pred CCCCEEEECCCCCCC
T ss_conf 698889789778769