HHsearch alignment for GI: 254780595 and conserved domain: PRK09009

>PRK09009 C factor cell-cell signaling protein; Provisional.
Probab=98.98  E-value=9.5e-09  Score=69.42  Aligned_cols=198  Identities=14%  Similarity=0.178  Sum_probs=104.7

Q ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEECCCCCCC--HHHHHHHCCCCEEEEEECCCCC
Q ss_conf             93999888-88899999999988988999967944634556449828980678640--2346541156327876124443
Q gi|254780595|r    1 MHLMIFGA-GYTGKFIADAALKVGVYTCGTTRSVSNLLTLKHKGISPFLFADQKIN--NLLREKLYFTTHIVQCIKPSSE   77 (289)
Q Consensus         1 MkIlI~Ga-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~   77 (289)
T Consensus         1 mnVLITGas~GIG~aia~~l~~~~~~~~v~~~~~~~~~~~~~~~v~~~~~Dvt~~~~i~~~~~~~~~iD~linnAGi~~~   80 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLETYPDATVHATYRHHKPDFRHDNVQWHALDVTDEAEIKQLSEQFTQLDWLINCVGMLHT   80 (235)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             97999755639999999999856998099997377654445798389987479999999999870877899976752446


Q ss_pred             ----CCEEEC---------CCCCHHH----------HHH--HCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             ----310001---------2210134----------432--012334333320102576212345321123431134554
Q gi|254780595|r   78 ----GDPCII---------SMSKDFY----------KFM--PHVKWIGYLSSTSIYGNREGQWVDEHSFVHPISCVATQR  132 (289)
Q Consensus        78 ----~~~~~~---------~~~~~~~----------~~~--~~~~~~i~~SS~~VYg~~~g~~i~E~~~~~P~~~y~~~k  132 (289)
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~l~~~~~~~iv~isS~~--g~-----i~~-~~~~g~~~Y~aSK  152 (235)
T PRK09009         81 QDKGPEKSLQSLDSDFFLQNITLNTLPSLLLAKHFTPLLKQSESARFAVISAKV--GS-----ISD-NRLGGWYSYRASK  152 (235)
T ss_pred             CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE--CC-----CCC-CCCCCCHHHHHHH
T ss_conf             777764686778999999999886199999999999999860787640122234--15-----778-8888623669999


Q ss_pred             HHHHHHHHHCCCCC-----CCCCCCCCCCCCCCCCCCHHHH-HHCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCC---
Q ss_conf             45555432001234-----5676420347777898503444-31134543222110001024777799999995135---
Q gi|254780595|r  133 FNAEKEWLAITKKL-----NIKLAVLRLSGIYGPKRNPFIK-IRQKNSLRLVKKNQVFNRIRVEDVARCVIFLMTHH---  203 (289)
Q Consensus       133 ~~~E~~~~~~~~~~-----~~~~~ilR~~~iyGp~r~~~~~-~~~g~~~~~~~~~~~~~~ihv~Dva~~i~~l~~~~---  203 (289)
T Consensus       153 aAl~~lt~~la~E~~~~~~~i~V~~i~PG~v~T~----m~~~~~~~----~p~~----r~~~PeeiA~~i~~L~s~~s~~  220 (235)
T PRK09009        153 AALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTP----LSKPFQQN----VPKG----KLFTPEYVAQCLLGIIANATPA  220 (235)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC----CCCHHHHC----CCCC----CCCCHHHHHHHHHHHHCCCCCC
T ss_conf             9999999999999764269968999814865671----23067857----9988----8829999999999997169723


Q ss_pred             CCCCEECCCCCHHHH
Q ss_conf             578616268433338
Q gi|254780595|r  204 LGGIFNLSDDEPAPP  218 (289)
Q Consensus       204 ~~~iyni~~~~~~s~  218 (289)
T Consensus       221 ~tG~~i~vdG~~~pW  235 (235)
T PRK09009        221 QSGSFLAYDGEELPW  235 (235)
T ss_pred             CCCCEEEECCCCCCC
T ss_conf             698889789778769