HHsearch alignment for GI: 254780595 and conserved domain: PRK09186
>PRK09186 flagellin modification protein A; Provisional.
Probab=98.73 E-value=3.2e-07 Score=60.70 Aligned_cols=201 Identities=17% Similarity=0.185 Sum_probs=111.2
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHH----HHHCC---CEEEECCCCCCCHHHH-------HHHCCCC
Q ss_conf 3999888-888999999999889889999679446345----56449---8289806786402346-------5411563
Q gi|254780595|r 2 HLMIFGA-GYTGKFIADAALKVGVYTCGTTRSVSNLLT----LKHKG---ISPFLFADQKINNLLR-------EKLYFTT 66 (289)
Q Consensus 2 kIlI~Ga-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----l~~~~---~~~~~~~~~~~~~~~~-------~~~~~~~ 66 (289)
T Consensus 6 ~~lVTGgs~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~Dvt~~-~~v~~~~~~~~~~~g~id 84 (255)
T PRK09186 6 TILITGAGGLIGSALVKAILEAGGIVIAADINKEALNKLLESLGTIEKTKLTLVELDITDQ-ESLEEFLSKSQERYGKID 84 (255)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCH-HHHHHHHHHHHHHHCCCC
T ss_conf 8999795868999999999987999999969889999999999870598079998468999-999999999999819977
Q ss_pred EEEEEECCCCCC------CEEECCC----CCHH----------HHHH--HCCCCCCCCCCEEECCCCCCC-CCCCCCCCC
Q ss_conf 278761244433------1000122----1013----------4432--012334333320102576212-345321123
Q gi|254780595|r 67 HIVQCIKPSSEG------DPCIISM----SKDF----------YKFM--PHVKWIGYLSSTSIYGNREGQ-WVDEHSFVH 123 (289)
Q Consensus 67 ~v~~~~~~~~~~------~~~~~~~----~~~~----------~~~~--~~~~~~i~~SS~~VYg~~~g~-~i~E~~~~~ 123 (289)
T Consensus 85 ~lVnnA~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IVnisSi--~g~~~~~~~~~~g~~~~ 162 (255)
T PRK09186 85 GAVNCAYPRNKQYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGSLVNISSI--YGVVAPKFEIYEGTSMT 162 (255)
T ss_pred EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCH--HHHCCCCCCCCCCCCCC
T ss_conf 8997576678767777010999999999999839999999999998874289738995667--87347642112687654
Q ss_pred CCCHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCCCCCH-HHHHHCCCCCCCCCCCCEECCHHHHHHHHHHHHH
Q ss_conf 4311345544555543200123---45676420347777898503-4443113454322211000102477779999999
Q gi|254780595|r 124 PISCVATQRFNAEKEWLAITKK---LNIKLAVLRLSGIYGPKRNP-FIKIRQKNSLRLVKKNQVFNRIRVEDVARCVIFL 199 (289)
Q Consensus 124 P~~~y~~~k~~~E~~~~~~~~~---~~~~~~ilR~~~iyGp~r~~-~~~~~~g~~~~~~~~~~~~~~ihv~Dva~~i~~l 199 (289)
T Consensus 163 ~~~~Y~asKaal~~ltr~lA~e~a~~gIrVN~VaPG~i~~~~~~~~~~~~~~~~~~--------~~~~~p~dia~~v~fL 234 (255)
T PRK09186 163 SPVEYAAIKSGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQPEAFLNAYKKSCNG--------KGMLDPEDICGSLVFL 234 (255)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCC--------CCCCCHHHHHHHHHHH
T ss_conf 46767998899999999999996758989999855768899989999999863557--------7998999999999999
Q ss_pred HCCC----CCCCEECCCC
Q ss_conf 5135----5786162684
Q gi|254780595|r 200 MTHH----LGGIFNLSDD 213 (289)
Q Consensus 200 ~~~~----~~~iyni~~~ 213 (289)
T Consensus 235 ~Sd~s~~iTGq~i~VDGG 252 (255)
T PRK09186 235 LSDQSKYITGQNIIVDDG 252 (255)
T ss_pred HCCHHCCCCCCEEEECCC
T ss_conf 570536801852883858