HHsearch alignment for GI: 254780595 and conserved domain: PRK09186

>PRK09186 flagellin modification protein A; Provisional.
Probab=98.73  E-value=3.2e-07  Score=60.70  Aligned_cols=201  Identities=17%  Similarity=0.185  Sum_probs=111.2

Q ss_pred             EEEEECC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHH----HHHCC---CEEEECCCCCCCHHHH-------HHHCCCC
Q ss_conf             3999888-888999999999889889999679446345----56449---8289806786402346-------5411563
Q gi|254780595|r    2 HLMIFGA-GYTGKFIADAALKVGVYTCGTTRSVSNLLT----LKHKG---ISPFLFADQKINNLLR-------EKLYFTT   66 (289)
Q Consensus         2 kIlI~Ga-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----l~~~~---~~~~~~~~~~~~~~~~-------~~~~~~~   66 (289)
T Consensus         6 ~~lVTGgs~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~Dvt~~-~~v~~~~~~~~~~~g~id   84 (255)
T PRK09186          6 TILITGAGGLIGSALVKAILEAGGIVIAADINKEALNKLLESLGTIEKTKLTLVELDITDQ-ESLEEFLSKSQERYGKID   84 (255)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCH-HHHHHHHHHHHHHHCCCC
T ss_conf             8999795868999999999987999999969889999999999870598079998468999-999999999999819977


Q ss_pred             EEEEEECCCCCC------CEEECCC----CCHH----------HHHH--HCCCCCCCCCCEEECCCCCCC-CCCCCCCCC
Q ss_conf             278761244433------1000122----1013----------4432--012334333320102576212-345321123
Q gi|254780595|r   67 HIVQCIKPSSEG------DPCIISM----SKDF----------YKFM--PHVKWIGYLSSTSIYGNREGQ-WVDEHSFVH  123 (289)
Q Consensus        67 ~v~~~~~~~~~~------~~~~~~~----~~~~----------~~~~--~~~~~~i~~SS~~VYg~~~g~-~i~E~~~~~  123 (289)
T Consensus        85 ~lVnnA~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IVnisSi--~g~~~~~~~~~~g~~~~  162 (255)
T PRK09186         85 GAVNCAYPRNKQYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGSLVNISSI--YGVVAPKFEIYEGTSMT  162 (255)
T ss_pred             EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCH--HHHCCCCCCCCCCCCCC
T ss_conf             8997576678767777010999999999999839999999999998874289738995667--87347642112687654


Q ss_pred             CCCHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCCCCCH-HHHHHCCCCCCCCCCCCEECCHHHHHHHHHHHHH
Q ss_conf             4311345544555543200123---45676420347777898503-4443113454322211000102477779999999
Q gi|254780595|r  124 PISCVATQRFNAEKEWLAITKK---LNIKLAVLRLSGIYGPKRNP-FIKIRQKNSLRLVKKNQVFNRIRVEDVARCVIFL  199 (289)
Q Consensus       124 P~~~y~~~k~~~E~~~~~~~~~---~~~~~~ilR~~~iyGp~r~~-~~~~~~g~~~~~~~~~~~~~~ihv~Dva~~i~~l  199 (289)
T Consensus       163 ~~~~Y~asKaal~~ltr~lA~e~a~~gIrVN~VaPG~i~~~~~~~~~~~~~~~~~~--------~~~~~p~dia~~v~fL  234 (255)
T PRK09186        163 SPVEYAAIKSGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQPEAFLNAYKKSCNG--------KGMLDPEDICGSLVFL  234 (255)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCC--------CCCCCHHHHHHHHHHH
T ss_conf             46767998899999999999996758989999855768899989999999863557--------7998999999999999


Q ss_pred             HCCC----CCCCEECCCC
Q ss_conf             5135----5786162684
Q gi|254780595|r  200 MTHH----LGGIFNLSDD  213 (289)
Q Consensus       200 ~~~~----~~~iyni~~~  213 (289)
T Consensus       235 ~Sd~s~~iTGq~i~VDGG  252 (255)
T PRK09186        235 LSDQSKYITGQNIIVDDG  252 (255)
T ss_pred             HCCHHCCCCCCEEEECCC
T ss_conf             570536801852883858