HHsearch alignment for GI: 254780595 and conserved domain: TIGR03589
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=99.94 E-value=4.3e-26 Score=168.40 Aligned_cols=213 Identities=15% Similarity=0.138 Sum_probs=151.6
Q ss_pred EEEEECC-CHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH----HCCCEEEECCCCCCCHHHHHHHCCCCEEEEEECC
Q ss_conf 3999888-88899999999988--988999967944634556----4498289806786402346541156327876124
Q gi|254780595|r 2 HLMIFGA-GYTGKFIADAALKV--GVYTCGTTRSVSNLLTLK----HKGISPFLFADQKINNLLREKLYFTTHIVQCIKP 74 (289)
Q Consensus 2 kIlI~Ga-G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 74 (289)
T Consensus 6 ~ILVTGGaGfIGS~lv~~Ll~~~~~~~iii~~~de~~~~~l~~~~~~~~i~f~~gDIr-D~~~l~~~~~~vD~VfHaAA~ 84 (324)
T TIGR03589 6 SILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVR-DKERLTRALRGVDYVVHAAAL 84 (324)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCEEEEECCCC-CHHHHHHHHCCCCEEEECCCC
T ss_conf 9999079779999999999972998289996686403288985168987599967777-889999763488899994627
Q ss_pred ----CCCCCEE-----ECCCCCHHH--HHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---
Q ss_conf ----4433100-----012210134--43201233433332010257621234532112343113455445555432---
Q gi|254780595|r 75 ----SSEGDPC-----IISMSKDFY--KFMPHVKWIGYLSSTSIYGNREGQWVDEHSFVHPISCVATQRFNAEKEWL--- 140 (289)
Q Consensus 75 ----~~~~~~~-----~~~~~~~~~--~~~~~~~~~i~~SS~~VYg~~~g~~i~E~~~~~P~~~y~~~k~~~E~~~~--- 140 (289)
T Consensus 85 khVp~se~nP~e~i~tNV~Gt~nlleaa~~~~Vkk~V~iSTDka--------------~~P~n~yGasK~~~E~l~~~~~ 150 (324)
T TIGR03589 85 KQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKA--------------ANPINLYGATKLASDKLFVAAN 150 (324)
T ss_pred CCCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC--------------CCCCCCCCCCHHHHHHHHHHHH
T ss_conf 76726776989999999799999999988555431786226888--------------8996743123676799999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCH----HHHHHCC-CCCCCCCCCCEECCHHHHHHHHHHHHHHCCC-CCCCEECCCCC
Q ss_conf 0012345676420347777898503----4443113-4543222110001024777799999995135-57861626843
Q gi|254780595|r 141 AITKKLNIKLAVLRLSGIYGPKRNP----FIKIRQK-NSLRLVKKNQVFNRIRVEDVARCVIFLMTHH-LGGIFNLSDDE 214 (289)
Q Consensus 141 ~~~~~~~~~~~ilR~~~iyGp~r~~----~~~~~~g-~~~~~~~~~~~~~~ihv~Dva~~i~~l~~~~-~~~iyni~~~~ 214 (289)
T Consensus 151 ~~~~~~~~~~~~vRygNV~gsrgSViP~F~~qi~~g~~~~~itd~~mtRf~mtv~dav~lV~~a~~~~~~GEifv~-k~~ 229 (324)
T TIGR03589 151 NISGSKGTRFSVVRYGNVVGSRGSVVPFFKSLKEEGVTELPITDPRMTRFWITLEQGVNFVLKSLERMLGGEIFVP-KIP 229 (324)
T ss_pred HHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCEEEEC-CCC
T ss_conf 8507888637886332751888663999999998399974449998079988899999999999982889849983-697
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 3338999999999955
Q gi|254780595|r 215 PAPPQNVIMEAASLMK 230 (289)
Q Consensus 215 ~~s~~e~~~~i~~~~g 230 (289)
T Consensus 230 s~~i~dla~~~~~~~~ 245 (324)
T TIGR03589 230 SMKITDLAEAMAPECP 245 (324)
T ss_pred CCHHHHHHHHHHCCCC
T ss_conf 0259999998604698