HHsearch alignment for GI: 254780595 and conserved domain: pfam05368
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=99.92 E-value=4.2e-24 Score=157.00 Aligned_cols=215 Identities=18% Similarity=0.093 Sum_probs=147.1
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCEEEEEECCHHH--HHHHHHCCCEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 999888-888999999999889889999679446--34556449828980678640234654115632787612444331
Q gi|254780595|r 3 LMIFGA-GYTGKFIADAALKVGVYTCGTTRSVSN--LLTLKHKGISPFLFADQKINNLLREKLYFTTHIVQCIKPSSEGD 79 (289)
Q Consensus 3 IlI~Ga-G~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 79 (289)
T Consensus 1 IlV~GatG~iG~~vv~~L~~~g~~Vr~l~R~~~~~~~~~l~~~gve~v~gD~-~d~~sl~~al~gvd~v~~~~~~~~~~~ 79 (232)
T pfam05368 1 ILVFGATGYQGGSVVRASLKAGHPVRALVRDPKSELAKSLKAAGVELVEGDL-DDHESLVEALKGVDVVFSVTGFWLSKE 79 (232)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCEEEEECC-CCHHHHHHHHCCCCEEEEECCCCCCHH
T ss_conf 0998968289999999998589938999718736656666417988999068-887899999679988999158874177
Q ss_pred EEECCCCCHHH--HHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 00012210134--4320123343333201025762123453211234311345544555543200123456764203477
Q gi|254780595|r 80 PCIISMSKDFY--KFMPHVKWIGYLSSTSIYGNREGQWVDEHSFVHPISCVATQRFNAEKEWLAITKKLNIKLAVLRLSG 157 (289)
Q Consensus 80 ~~~~~~~~~~~--~~~~~~~~~i~~SS~~VYg~~~g~~i~E~~~~~P~~~y~~~k~~~E~~~~~~~~~~~~~~~ilR~~~ 157 (289)
T Consensus 80 --~~-~~~~~~~AA~~aGVk~~V~ss-~~~~-------~~~~~~~~~~~~~~~~K~~~e~~l~----~~g~~~tilrp~~ 144 (232)
T pfam05368 80 --IE-DGKKLADAAKEAGVKHFIPSE-FGND-------VDRSNGVEPAVPHFDSKAEVERYIR----ALGIPYTFVYAGF 144 (232)
T ss_pred --HH-HHHHHHHHHHHCCCCCEEEEE-ECCC-------CCCCCCCCCCCHHHHHHHHHHHHHH----HHCCCEEEEECCC
T ss_conf --99-999999999973998345555-0125-------5456766655278898999999999----8199859996842
Q ss_pred CCCCCCCHHH---HHHC--CCCCCCCCCC-CEECCHHHHHHHHHHHHHHCCC--CCCCEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 7789850344---4311--3454322211-0001024777799999995135--57861626843333899999999995
Q gi|254780595|r 158 IYGPKRNPFI---KIRQ--KNSLRLVKKN-QVFNRIRVEDVARCVIFLMTHH--LGGIFNLSDDEPAPPQNVIMEAASLM 229 (289)
Q Consensus 158 iyGp~r~~~~---~~~~--g~~~~~~~~~-~~~~~ihv~Dva~~i~~l~~~~--~~~iyni~~~~~~s~~e~~~~i~~~~ 229 (289)
T Consensus 145 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dva~~~~~~l~~p~~~~~~~~~~~~~~lT~~Eia~~~~~~~ 224 (232)
T pfam05368 145 FMGNFLSNLAPPGDLAPPRDKVTLLGPGNPKAVPLDDEEDIGTYVIKILDDPRKLKGKYIRPPGNILSGNEIAELWSKKI 224 (232)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHHCCHHHCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 54301656544320257653699944898761126528899999999964912119999982898679999999999988
Q ss_pred CCCC
Q ss_conf 5799
Q gi|254780595|r 230 KITP 233 (289)
Q Consensus 230 g~~~ 233 (289)
T Consensus 225 Gr~v 228 (232)
T pfam05368 225 GKTV 228 (232)
T ss_pred CCCC
T ss_conf 9983