BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780595|ref|YP_003065008.1| nucleoside-diphosphate-sugar epimerase protein [Candidatus Liberibacter asiaticus str. psy62] (289 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780595|ref|YP_003065008.1| nucleoside-diphosphate-sugar epimerase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 289 Score = 603 bits (1555), Expect = e-175, Method: Compositional matrix adjust. Identities = 289/289 (100%), Positives = 289/289 (100%) Query: 1 MHLMIFGAGYTGKFIADAALKVGVYTCGTTRSVSNLLTLKHKGISPFLFADQKINNLLRE 60 MHLMIFGAGYTGKFIADAALKVGVYTCGTTRSVSNLLTLKHKGISPFLFADQKINNLLRE Sbjct: 1 MHLMIFGAGYTGKFIADAALKVGVYTCGTTRSVSNLLTLKHKGISPFLFADQKINNLLRE 60 Query: 61 KLYFTTHIVQCIKPSSEGDPCIISMSKDFYKFMPHVKWIGYLSSTSIYGNREGQWVDEHS 120 KLYFTTHIVQCIKPSSEGDPCIISMSKDFYKFMPHVKWIGYLSSTSIYGNREGQWVDEHS Sbjct: 61 KLYFTTHIVQCIKPSSEGDPCIISMSKDFYKFMPHVKWIGYLSSTSIYGNREGQWVDEHS 120 Query: 121 FVHPISCVATQRFNAEKEWLAITKKLNIKLAVLRLSGIYGPKRNPFIKIRQKNSLRLVKK 180 FVHPISCVATQRFNAEKEWLAITKKLNIKLAVLRLSGIYGPKRNPFIKIRQKNSLRLVKK Sbjct: 121 FVHPISCVATQRFNAEKEWLAITKKLNIKLAVLRLSGIYGPKRNPFIKIRQKNSLRLVKK 180 Query: 181 NQVFNRIRVEDVARCVIFLMTHHLGGIFNLSDDEPAPPQNVIMEAASLMKITPPLEQCFD 240 NQVFNRIRVEDVARCVIFLMTHHLGGIFNLSDDEPAPPQNVIMEAASLMKITPPLEQCFD Sbjct: 181 NQVFNRIRVEDVARCVIFLMTHHLGGIFNLSDDEPAPPQNVIMEAASLMKITPPLEQCFD 240 Query: 241 TANISPFTRFFYADNKRISNAKIKSLGFQLLYPNYRISLKQLWKEIENL 289 TANISPFTRFFYADNKRISNAKIKSLGFQLLYPNYRISLKQLWKEIENL Sbjct: 241 TANISPFTRFFYADNKRISNAKIKSLGFQLLYPNYRISLKQLWKEIENL 289 >gi|254780233|ref|YP_003064646.1| GTP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 624 Score = 25.8 bits (55), Expect = 0.94, Method: Compositional matrix adjust. Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 85 MSKDFYKFMPHVKWIGYLSSTSIYGNREGQWV 116 M++ F+ + PH IG S+ + N EG+ V Sbjct: 480 MNRLFHSYQPHKGEIGGRSNGVLLSNEEGKVV 511 >gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 245 Score = 25.0 bits (53), Expect = 1.4, Method: Compositional matrix adjust. Identities = 14/64 (21%), Positives = 33/64 (51%), Gaps = 5/64 (7%) Query: 86 SKDFYKFMPHVKWIGYLSSTSIYGNREGQWVDEHSFVHPISCVATQRFNAEKEWLAITKK 145 S D Y ++ HV + + ++ ++G+W+ + S+V + RF E + + TK+ Sbjct: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-----KSIRFKVEYQSRSQTKQ 79 Query: 146 LNIK 149 +++ Sbjct: 80 SDVQ 83 >gi|254780288|ref|YP_003064701.1| exodeoxyribonuclease III protein [Candidatus Liberibacter asiaticus str. psy62] Length = 281 Score = 24.6 bits (52), Expect = 1.9, Method: Compositional matrix adjust. Identities = 12/49 (24%), Positives = 20/49 (40%) Query: 142 ITKKLNIKLAVLRLSGIYGPKRNPFIKIRQKNSLRLVKKNQVFNRIRVE 190 I I LR+ +Y P NP + + + +K+ F R+E Sbjct: 95 IEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLE 143 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.324 0.138 0.423 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 187,363 Number of Sequences: 1233 Number of extensions: 7451 Number of successful extensions: 25 Number of sequences better than 100.0: 5 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 5 length of query: 289 length of database: 328,796 effective HSP length: 73 effective length of query: 216 effective length of database: 238,787 effective search space: 51577992 effective search space used: 51577992 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 38 (19.2 bits)