BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780595|ref|YP_003065008.1| nucleoside-diphosphate-sugar
epimerase protein [Candidatus Liberibacter asiaticus str. psy62]
         (289 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780595|ref|YP_003065008.1| nucleoside-diphosphate-sugar epimerase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 289

 Score =  603 bits (1555), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 289/289 (100%), Positives = 289/289 (100%)

Query: 1   MHLMIFGAGYTGKFIADAALKVGVYTCGTTRSVSNLLTLKHKGISPFLFADQKINNLLRE 60
           MHLMIFGAGYTGKFIADAALKVGVYTCGTTRSVSNLLTLKHKGISPFLFADQKINNLLRE
Sbjct: 1   MHLMIFGAGYTGKFIADAALKVGVYTCGTTRSVSNLLTLKHKGISPFLFADQKINNLLRE 60

Query: 61  KLYFTTHIVQCIKPSSEGDPCIISMSKDFYKFMPHVKWIGYLSSTSIYGNREGQWVDEHS 120
           KLYFTTHIVQCIKPSSEGDPCIISMSKDFYKFMPHVKWIGYLSSTSIYGNREGQWVDEHS
Sbjct: 61  KLYFTTHIVQCIKPSSEGDPCIISMSKDFYKFMPHVKWIGYLSSTSIYGNREGQWVDEHS 120

Query: 121 FVHPISCVATQRFNAEKEWLAITKKLNIKLAVLRLSGIYGPKRNPFIKIRQKNSLRLVKK 180
           FVHPISCVATQRFNAEKEWLAITKKLNIKLAVLRLSGIYGPKRNPFIKIRQKNSLRLVKK
Sbjct: 121 FVHPISCVATQRFNAEKEWLAITKKLNIKLAVLRLSGIYGPKRNPFIKIRQKNSLRLVKK 180

Query: 181 NQVFNRIRVEDVARCVIFLMTHHLGGIFNLSDDEPAPPQNVIMEAASLMKITPPLEQCFD 240
           NQVFNRIRVEDVARCVIFLMTHHLGGIFNLSDDEPAPPQNVIMEAASLMKITPPLEQCFD
Sbjct: 181 NQVFNRIRVEDVARCVIFLMTHHLGGIFNLSDDEPAPPQNVIMEAASLMKITPPLEQCFD 240

Query: 241 TANISPFTRFFYADNKRISNAKIKSLGFQLLYPNYRISLKQLWKEIENL 289
           TANISPFTRFFYADNKRISNAKIKSLGFQLLYPNYRISLKQLWKEIENL
Sbjct: 241 TANISPFTRFFYADNKRISNAKIKSLGFQLLYPNYRISLKQLWKEIENL 289


>gi|254780233|ref|YP_003064646.1| GTP-binding protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 624

 Score = 25.8 bits (55), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 85  MSKDFYKFMPHVKWIGYLSSTSIYGNREGQWV 116
           M++ F+ + PH   IG  S+  +  N EG+ V
Sbjct: 480 MNRLFHSYQPHKGEIGGRSNGVLLSNEEGKVV 511


>gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 245

 Score = 25.0 bits (53), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/64 (21%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 86  SKDFYKFMPHVKWIGYLSSTSIYGNREGQWVDEHSFVHPISCVATQRFNAEKEWLAITKK 145
           S D Y ++ HV  +    +  ++  ++G+W+ + S+V       + RF  E +  + TK+
Sbjct: 25  SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-----KSIRFKVEYQSRSQTKQ 79

Query: 146 LNIK 149
            +++
Sbjct: 80  SDVQ 83


>gi|254780288|ref|YP_003064701.1| exodeoxyribonuclease III protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 281

 Score = 24.6 bits (52), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 142 ITKKLNIKLAVLRLSGIYGPKRNPFIKIRQKNSLRLVKKNQVFNRIRVE 190
           I     I    LR+  +Y P  NP    +  + +  +K+   F   R+E
Sbjct: 95  IEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLE 143


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.138    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,363
Number of Sequences: 1233
Number of extensions: 7451
Number of successful extensions: 25
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 5
length of query: 289
length of database: 328,796
effective HSP length: 73
effective length of query: 216
effective length of database: 238,787
effective search space: 51577992
effective search space used: 51577992
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 38 (19.2 bits)