RPSBLAST alignment for GI: 254780596 and conserved domain: TIGR02857

>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529
 Score =  109 bits (274), Expect = 2e-24
 Identities = 74/205 (36%), Positives = 102/205 (49%), Gaps = 29/205 (14%)

Query: 32  VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87
            L  V+F V  GE V L+G SG+GKSTLL ++ G V P+ G +   G  + D   D    
Sbjct: 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396

Query: 88  -ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESA------ 140
            I+ V Q   LF   T+ EN+ L       D E RR     A++  GLD F +A      
Sbjct: 397 QIAWVPQHPFLFAG-TIAENIRLARPD-ASDAEIRR-----ALERAGLDEFVAALPQGLD 449

Query: 141 -----HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195
                    +SGG  QR+  ARAF+    LLL+DEP + LD  T E L T+ +    +GR
Sbjct: 450 TLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET-EALVTEALRALAQGR 508

Query: 196 LPIESMLMVTHNIEEAVLMCDRVLV 220
               ++L+VTH +  A    DR++V
Sbjct: 509 ----TVLLVTHRLALAERA-DRIVV 528