RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] (438 letters) >gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 248 Score = 289 bits (740), Expect = 1e-78 Identities = 124/254 (48%), Positives = 169/254 (66%), Gaps = 9/254 (3%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 LLEI+ + +SF G + VL+ +N +V GE V +LG SG GKSTLLR+IAGL P+ Sbjct: 3 LLEIEGVSKSF------GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT 56 Query: 71 SGQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAID 130 SG+VL G+ + P DI VFQ AL PWLTVL+NV LGL+ +G K E R+RA ++ Sbjct: 57 SGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLE 116 Query: 131 LIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190 L+GL GFE + ++SGGM QRV ARA P LLL+DEPF ALD LT E L+ +L+ L Sbjct: 117 LVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRL 176 Query: 191 WIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSPEFRQI 250 W E R ++L+VTH+++EAV + DRV+V S+ PGRI EE+ I +P PR R PEF ++ Sbjct: 177 WEETRK---TVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPRIRGDPEFLEL 233 Query: 251 VEKIYALMTKKEEK 264 E++ + ++ K Sbjct: 234 REELLEELREEHVK 247 >gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 220 Score = 279 bits (716), Expect = 1e-75 Identities = 110/225 (48%), Positives = 155/225 (68%), Gaps = 5/225 (2%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 LE++++ +++ G + L+ ++ +V GE V L+G SG GKSTLLRIIAGL P+S Sbjct: 1 LEVRNVSKTYGGG--GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTS 58 Query: 72 GQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDL 131 G+VL G+ + P D VFQ AL PWLTVL+NV LGL+ +G+ K E R+RA ++L Sbjct: 59 GEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLEL 118 Query: 132 IGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLW 191 +GL GFE+A+ ++SGGM QRV ARA V P +LL+DEPFSALD LT E L+ +L+D+W Sbjct: 119 VGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIW 178 Query: 192 IEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISI 236 E ++L+VTH+I+EAV + DRV+V S+ PGRI EV + + Sbjct: 179 RETGK---TVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVDL 220 >gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 213 Score = 219 bits (559), Expect = 1e-57 Identities = 94/222 (42%), Positives = 136/222 (61%), Gaps = 14/222 (6%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 LE++ + +++ G++ LD ++ V GE + LLG SG GK+TLLR+IAGL P S Sbjct: 1 LELKGLSKTY------GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS 54 Query: 72 GQVLFKGKKIKDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSA 128 G++L G+ + P ++I +VFQ +ALFP LTV EN+ GLK +G+ K E R R Sbjct: 55 GEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVREL 114 Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188 ++L+GL+G + + E+SGG QRV ARA PSLLL+DEP SALD E LR +L Sbjct: 115 LELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELK 174 Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 +L E + + VTH+ EEA+ + DR+ V + GRI + Sbjct: 175 ELQRELGIT---TIYVTHDQEEALALADRIAVMNE--GRIVQ 211 >gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 259 Score = 208 bits (531), Expect = 2e-54 Identities = 94/199 (47%), Positives = 136/199 (68%), Gaps = 3/199 (1%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVV 91 L+ V+ ++SGE+V +LG SG GK+TLL +IAG V+PS G + G++I+ P + VV Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVV 79 Query: 92 FQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQ 151 FQ AL PWL V++NV GL+ +GI+K +RR+ A + L+GL+G E + ++SGGM Q Sbjct: 80 FQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQ 139 Query: 152 RVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEA 211 RVG ARA V P LLL+DEPF ALD LT E ++ L+DLW + + +L++TH+IEEA Sbjct: 140 RVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLW---QETGKQVLLITHDIEEA 196 Query: 212 VLMCDRVLVFSSNPGRIAE 230 + + R++V S PGR+ E Sbjct: 197 LFLATRLVVLSPGPGRVVE 215 >gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]. Length = 352 Score = 207 bits (527), Expect = 7e-54 Identities = 103/246 (41%), Positives = 145/246 (58%), Gaps = 23/246 (9%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 LEI+++ +SF G+ +D ++ ++ GE V LLG SG GK+TLLR+IAG PS Sbjct: 5 ALEIRNVSKSF------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS 58 Query: 71 SGQVLFKGKKIKDPP---KDISVVFQTFALFPWLTVLENVELGLKAKG-IDKEERRKRAL 126 SG++L G+ I D P + I +VFQ++ALFP +TV ENV GLK + + K E + R Sbjct: 59 SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118 Query: 127 SAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186 A++L+GL+GF ++SGG QRV ARA V P +LL+DEP SALD E +R + Sbjct: 119 EALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKE 178 Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI-----AEEVLISIPHPRN 241 L +L + L I + + VTH+ EEA+ M DR+ V N GRI EE+ P Sbjct: 179 LKEL--QRELGI-TFVYVTHDQEEALAMSDRIAVM--NDGRIEQVGTPEEIYE---RPAT 230 Query: 242 RLSPEF 247 R +F Sbjct: 231 RFVADF 236 >gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]. Length = 386 Score = 190 bits (484), Expect = 7e-49 Identities = 97/270 (35%), Positives = 155/270 (57%), Gaps = 27/270 (10%) Query: 27 SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP- 85 +G ++ ++ + +V GEI ++G SGSGKSTL+R++ L+ P+ G++L GK I Sbjct: 38 TGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSA 97 Query: 86 --------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGF 137 K IS+VFQ+FAL P TVLENV GL+ +G+ K ER +RAL A++L+GL+G+ Sbjct: 98 AELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGY 157 Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197 + E+SGGM QRVG ARA P +LLMDE FSALD L ++ +L++L + +L Sbjct: 158 ADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLEL--QAKLK 215 Query: 198 IESMLMVTHNIEEAVLMCDRVLVFSSNPGRI-----AEEVLISIPHPRNRLSPEF----- 247 ++++ +TH+++EA+ + DR+ + G I EE+L+ +P N +F Sbjct: 216 -KTIVFITHDLDEALRIGDRIAIMKD--GEIVQVGTPEEILL---NPANDYVRDFVRNVD 269 Query: 248 RQIVEKIYALMTKKEEKRLNPLENAPGSGI 277 R V +M + + + P + Sbjct: 270 RSRVLTAKDIMRRPDLLIRKTPGDGPRVAL 299 >gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 269 Score = 187 bits (477), Expect = 5e-48 Identities = 90/208 (43%), Positives = 135/208 (64%), Gaps = 12/208 (5%) Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81 + K +G + ++ V+ +V GEI ++G SGSGKSTLLR I L+ P+SG+VL G+ I Sbjct: 29 EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDI 88 Query: 82 KDPP---------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI 132 K IS+VFQ+FAL P TVLENV GL+ +G+ + ER +RA A++L+ Sbjct: 89 AAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELV 148 Query: 133 GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWI 192 GL+G+E + E+SGGM QRVG ARA V P +LLMDE FSALD L ++ +L+ L Sbjct: 149 GLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA 208 Query: 193 EGRLPIESMLMVTHNIEEAVLMCDRVLV 220 E + ++++ +TH+++EA+ + DR+ + Sbjct: 209 ELQ---KTIVFITHDLDEALRLGDRIAI 233 >gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 232 Score = 187 bits (476), Expect = 5e-48 Identities = 94/234 (40%), Positives = 141/234 (60%), Gaps = 16/234 (6%) Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81 ++ K G + LD V+ ++ GE LLG SG GK+TLLR+IAG +P+SG++L GK I Sbjct: 5 NVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI 64 Query: 82 KDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFE 138 + P + ++ VFQ +ALFP LTV EN+ GL+ K + K E ++R A+DL+ L+G+ Sbjct: 65 TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYA 124 Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198 + +++SGG QRV ARA V P +LL+DEP ALD+ ++++ +L L + L I Sbjct: 125 NRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRL--QKELGI 182 Query: 199 ESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIP-----HPRNRLSPEF 247 + + VTH+ EEA+ M DR+ V N G+I + I P P NR +F Sbjct: 183 -TFVFVTHDQEEALTMSDRIAVM--NKGKIQQ---IGTPEEIYEEPANRFVADF 230 >gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]. Length = 338 Score = 184 bits (468), Expect = 5e-47 Identities = 90/222 (40%), Positives = 132/222 (59%), Gaps = 14/222 (6%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 LE++++ +SF G+ VL VN ++ GE V LLG SG GKSTLLR+IAGL P+S Sbjct: 4 LELKNVRKSF------GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS 57 Query: 72 GQVLFKGKKIKD-PPK--DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSA 128 G++L G+ + D PP+ I++VFQ +AL+P +TV EN+ GLK +G+ K E KR Sbjct: 58 GEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEV 117 Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188 L+GL+ + ++SGG QRV ARA V P + L+DEP S LD +R+++ Sbjct: 118 AKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIK 177 Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 L + + VTH+ EA+ + DR++V N GRI + Sbjct: 178 KLH---ERLGTTTIYVTHDQVEAMTLADRIVVM--NDGRIQQ 214 >gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]. Length = 293 Score = 175 bits (445), Expect = 2e-44 Identities = 85/212 (40%), Positives = 124/212 (58%), Gaps = 9/212 (4%) Query: 24 KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD 83 KK G+ LD V+F V GEI GLLG +G+GK+TLL+I+AGL+ P+SG++L G + Sbjct: 12 KKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK 71 Query: 84 PP----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFES 139 P + I V Q +L+P LTV EN+E + G+ KEE +R ++L GL+ + Sbjct: 72 EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKAN 131 Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199 +SGGM QR+ A A + P LL++DEP S LD + + L +L EG + I Sbjct: 132 KKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTI- 190 Query: 200 SMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 L+ TH +EEA +CDRV++ + G+I E Sbjct: 191 --LLSTHILEEAEELCDRVIILND--GKIIAE 218 >gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]. Length = 240 Score = 175 bits (445), Expect = 2e-44 Identities = 88/228 (38%), Positives = 130/228 (57%), Gaps = 19/228 (8%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 ++EI+++ +SF G+ VL ++ +V GE+V ++G SGSGKSTLLR + GL P Sbjct: 2 MIEIKNLSKSF------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD 55 Query: 71 SGQVLFKGKKIKDPP------KDISVVFQTFALFPWLTVLENVELGL-KAKGIDKEERRK 123 SG + G+ + D + + +VFQ F LFP LTVLENV L K K + K E R+ Sbjct: 56 SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEARE 115 Query: 124 RALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL 183 +AL ++ +GL A+ ++SGG QRV ARA + P ++L DEP SALD + Sbjct: 116 KALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEV 175 Query: 184 RTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 + DL EG +M++VTH + A + DRV+ + G+I EE Sbjct: 176 LDVMKDLAEEGM----TMIIVTHEMGFAREVADRVIFM--DQGKIIEE 217 >gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]. Length = 345 Score = 174 bits (442), Expect = 5e-44 Identities = 93/238 (39%), Positives = 133/238 (55%), Gaps = 21/238 (8%) Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82 +KK G LD ++ ++ SGE+V LLG SG+GKSTLLRIIAGL +P +G++ G+ + Sbjct: 8 VKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLF 67 Query: 83 D----PPKD--ISVVFQTFALFPWLTVLENVELGLKAKGI--DKEERRKRALSAIDLIGL 134 D +D + VFQ +ALFP +TV +N+ GLK + + E R R + L+ L Sbjct: 68 DVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQL 127 Query: 135 DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194 +G + ++SGG QRV ARA V P +LL+DEPF ALD + LR L L Sbjct: 128 EGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRL 187 Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI-----AEEVLISIPHPRNRLSPEF 247 + + + VTH+ EEA+ + DRV+V + GRI +EV HP +R F Sbjct: 188 GV---TTVFVTHDQEEALELADRVVVLNQ--GRIEQVGPPDEVY---DHPASRFVARF 237 >gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.. Length = 213 Score = 172 bits (438), Expect = 1e-43 Identities = 85/222 (38%), Positives = 131/222 (59%), Gaps = 14/222 (6%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 +E++++ + F GN+ LD +N +++ GE V LLG SG GK+T LR+IAGL P+S Sbjct: 1 VELENVTKRF------GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTS 54 Query: 72 GQVLFKGKKIKD-PPK--DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSA 128 G++ G+ + D PPK DI++VFQ +AL+P +TV +N+ GLK + + K+E +R Sbjct: 55 GRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREV 114 Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188 +L+ ++ ++SGG QRV RA V P + LMDEP S LD +R +L Sbjct: 115 AELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELK 174 Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 L + RL + + VTH+ EA+ M DR+ V N G+I + Sbjct: 175 RL--QQRLGT-TTIYVTHDQVEAMTMADRIAVM--NDGQIQQ 211 >gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]. Length = 309 Score = 172 bits (436), Expect = 2e-43 Identities = 90/227 (39%), Positives = 130/227 (57%), Gaps = 18/227 (7%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 ++E +++ + + GN +D VN + GE + L+G SGSGK+T L++I L+ P+ Sbjct: 1 MIEFENVSKRY------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT 54 Query: 71 SGQVLFKGKKIKDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA 125 SG++L G+ I D + I V Q LFP LTV EN+ K G DKE +KRA Sbjct: 55 SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRA 114 Query: 126 LSAIDLIGLDGFESAHT--TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL 183 +DL+GLD E A E+SGG QRVG ARA P +LLMDEPF ALD +T + L Sbjct: 115 DELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQL 174 Query: 184 RTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 + ++ +L E I + VTH+I+EA+ + DR+ V + G I + Sbjct: 175 QEEIKELQKELGKTI---VFVTHDIDEALKLADRIAVM--DAGEIVQ 216 >gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.. Length = 218 Score = 170 bits (432), Expect = 7e-43 Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 17/226 (7%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 +E++++ +++ + L V+ ++ GE V ++G SGSGKSTLL I+ GL P+S Sbjct: 1 IELKNLSKTY--GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTS 58 Query: 72 GQVLFKGKKIKDPP---------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR 122 G+V G I + I VFQ+F L P LT LENVEL L G+ K+ERR Sbjct: 59 GEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERR 118 Query: 123 KRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAEN 182 +RA ++ +GL + + +E+SGG QRV ARA P ++L DEP LD T + Sbjct: 119 ERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKE 178 Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228 + L +L E I ++VTH+ E DR++ G+I Sbjct: 179 VMELLRELNKEAGTTI---VVVTHD-PELAEYADRIIELRD--GKI 218 >gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 239 Score = 170 bits (431), Expect = 9e-43 Identities = 91/224 (40%), Positives = 131/224 (58%), Gaps = 18/224 (8%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 +E++++ + F G+ + LD V+ ++ SGE+V LLG SGSGK+TLLR+IAGL P S Sbjct: 3 IEVRNVSKRF------GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDS 56 Query: 72 GQVLFKGKKIKDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGI----DKEERRKR 124 G +LF G+ D P +++ VFQ +ALF +TV +NV GL+ K + E R + Sbjct: 57 GTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAK 116 Query: 125 ALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184 + L+ LD + ++SGG QRV ARA V P +LL+DEPF ALD + LR Sbjct: 117 VHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELR 176 Query: 185 TDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228 L L L + + + VTH+ EEA+ + DRV+V N GRI Sbjct: 177 RWLRRL--HDELHVTT-VFVTHDQEEALEVADRVVVM--NKGRI 215 >gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 339 Score = 169 bits (430), Expect = 1e-42 Identities = 84/247 (34%), Positives = 135/247 (54%), Gaps = 16/247 (6%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 ++E++++ ++F + +G + LD V+ + GEI G++G SG+GKSTLLR+I L P+ Sbjct: 1 MIELENVSKTFG-QTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT 59 Query: 71 SGQVLFKGKKIKDPP--------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR 122 SG V G+ + + I ++FQ F L TV ENV L+ G+ K E + Sbjct: 60 SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIK 119 Query: 123 KRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAEN 182 +R ++L+GL + ++SGG QRV ARA P +LL DE SALD T ++ Sbjct: 120 QRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQS 179 Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE--VLISIPHPR 240 + L D+ E L +++++TH +E +CDRV V GR+ EE V +P+ Sbjct: 180 ILELLKDINRELGL---TIVLITHEMEVVKRICDRVAVLDQ--GRLVEEGTVSEVFANPK 234 Query: 241 NRLSPEF 247 + ++ EF Sbjct: 235 HAITQEF 241 >gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 226 Score = 169 bits (429), Expect = 1e-42 Identities = 86/233 (36%), Positives = 123/233 (52%), Gaps = 18/233 (7%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 ++E++++ + + L + L VN + +GE V ++G SGSGKSTLL ++ GL P+ Sbjct: 1 MIELKNVSKIYGLGG--EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT 58 Query: 71 SGQVLFKGKKIKDPP---------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEER 121 SG+VL GK + K I VFQ F L P LTVLENVEL L G R Sbjct: 59 SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118 Query: 122 RKRALSAIDLIGLDGFESAHT-TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180 ++ A ++++GL+ +E+SGG QRV ARA + P ++L DEP LD TA Sbjct: 119 KRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTA 178 Query: 181 ENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVL 233 + + L +L E I +MVTH+ E DRV+ G+I EE L Sbjct: 179 KEVLELLRELNKERGKTI---IMVTHD-PELAKYADRVIELKD--GKIEEEEL 225 >gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.. Length = 213 Score = 167 bits (424), Expect = 7e-42 Identities = 91/215 (42%), Positives = 122/215 (56%), Gaps = 16/215 (7%) Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82 L K G+ VL ++ V GE+V ++G SGSGKSTLLR I L P SG ++ G K+ Sbjct: 6 LHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLT 65 Query: 83 DPPKDIS-------VVFQTFALFPWLTVLENVELGL-KAKGIDKEERRKRALSAIDLIGL 134 D K+I+ +VFQ F LFP LTVLEN+ L K KG+ K E +RAL ++ +GL Sbjct: 66 DDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGL 125 Query: 135 DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV-LTAENLRTDLIDLWIE 193 A+ ++SGG QRV ARA + P ++L DEP SALD L E L + DL E Sbjct: 126 ADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDV-MKDLAEE 184 Query: 194 GRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228 G +M++VTH + A + DRV+ GRI Sbjct: 185 GM----TMVVVTHEMGFAREVADRVIFMDD--GRI 213 >gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 235 Score = 165 bits (419), Expect = 2e-41 Identities = 90/244 (36%), Positives = 133/244 (54%), Gaps = 24/244 (9%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 +E++ + +SF G VL V+ +V GEI+ ++G SGSGKSTLLR+I GL+ P S Sbjct: 1 IELRGLTKSF------GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS 54 Query: 72 GQVLFKGKKI--------KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEER-R 122 G+VL G+ I + + ++FQ+ ALF LTV ENV L+ EE R Sbjct: 55 GEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIR 114 Query: 123 KRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAEN 182 + L ++ +GL G E + E+SGGM +RV ARA + P LLL DEP + LD + + Sbjct: 115 EIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGV 174 Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE----EVLISIPH 238 + DLI ++ L + S +MVTH+++ A + DR+ V G+I E L + Sbjct: 175 I-DDLI-RSLKKELGLTS-IMVTHDLDTAFAIADRIAVLY--DGKIVAEGTPEELRASDD 229 Query: 239 PRNR 242 P R Sbjct: 230 PLVR 233 >gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 178 Score = 164 bits (418), Expect = 4e-41 Identities = 83/219 (37%), Positives = 114/219 (52%), Gaps = 50/219 (22%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 LE++++ + + G VL+ V+ N+ +GEIV LLG SGSGKSTLLR IAGL P S Sbjct: 1 LELKNVSKRY------GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDS 54 Query: 72 GQVLFKGKKI-------KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKR 124 G +L G+ + + I +VFQ FALFP LTVLEN+ LGL Sbjct: 55 GSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL------------- 101 Query: 125 ALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184 SGG QRV ARA + P +LL+DEP SALD +T +R Sbjct: 102 ---------------------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140 Query: 185 TDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSS 223 L L + + +++VTH+++EA + DRV+V Sbjct: 141 ALLKSLQAQLGIT---VVLVTHDLDEAARLADRVVVLRD 176 >gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 233 Score = 163 bits (414), Expect = 1e-40 Identities = 86/229 (37%), Positives = 126/229 (55%), Gaps = 15/229 (6%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 ++E++++ + F G + L V+ +V GEI G++GRSG+GKSTL+R I GL P+ Sbjct: 1 MIELKNVSKVFGDTG--GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT 58 Query: 71 SGQVLFKGKKIKDPP--------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR 122 SG VL G + + I ++FQ F L TV ENV L L+ G+ K E Sbjct: 59 SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE 118 Query: 123 KRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAEN 182 +R L ++L+GL+ A+ ++SGG QRVG ARA P +LL DE SALD T ++ Sbjct: 119 ERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQS 178 Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 + L D+ E L I +++TH +E +CDRV V G + EE Sbjct: 179 ILALLRDINRELGLTI---VLITHEMEVVKRICDRVAVMEK--GEVVEE 222 >gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 235 Score = 161 bits (409), Expect = 3e-40 Identities = 84/213 (39%), Positives = 123/213 (57%), Gaps = 13/213 (6%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 L+++++ L V+ V G+ +LG +GSGKS LL IAG + P S Sbjct: 1 LKVENLS-------KDWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS 53 Query: 72 GQVLFKGKKIKDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSA 128 G++L GK I + P +DIS V Q +ALFP +TV +N+ GLK + +DK+E ++ L Sbjct: 54 GKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEI 113 Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188 +++G+D + +SGG QRV ARA VV P +LL+DEPFSALDV T E LR +L Sbjct: 114 AEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELK 173 Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221 + E + + L VTH+ EEA + D+V + Sbjct: 174 KIRKEFGVTV---LHVTHDFEEAWALADKVAIM 203 >gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]. Length = 539 Score = 158 bits (402), Expect = 2e-39 Identities = 86/243 (35%), Positives = 132/243 (54%), Gaps = 21/243 (8%) Query: 5 AIKDNRLLEIQDICQSFSLKK-----ISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTL 59 ++ LL ++++ + + +K G + +D V+F++ GE +GL+G SGSGKSTL Sbjct: 274 PLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTL 333 Query: 60 LRIIAGLVSPSSGQVLFKGK-------KIKDPPKDISVVFQ--TFALFPWLTVLENVELG 110 RI+AGL+ PSSG ++F G+ +++ + I +VFQ +L P +TV + + Sbjct: 334 ARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEP 393 Query: 111 LKA-KGIDKEERRKRALSAIDLIGLD-GFESAHTTEISGGMLQRVGFARAFVVFPSLLLM 168 L+ G ERR R ++L+GL F + E+SGG QRV ARA + P LL++ Sbjct: 394 LRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLIL 453 Query: 169 DEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228 DEP SALDV + L DL E L + L ++H++ + DRV V GRI Sbjct: 454 DEPVSALDVSVQAQVLNLLKDLQEELGL---TYLFISHDLAVVRYIADRVAVMYD--GRI 508 Query: 229 AEE 231 EE Sbjct: 509 VEE 511 Score = 140 bits (355), Expect = 7e-34 Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 25/239 (10%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP- 69 LLE++++ F+ G + + V+F V GEI+G++G SGSGKSTL + GL+ Sbjct: 5 LLEVENLTVEFATDG--GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEG 62 Query: 70 ---SSGQVLFKGKKIKDPP---------KDISVVFQ-TFALFPWLTVLENV--ELGLKAK 114 +SG+V+ G+ + K I+++FQ + + + E Sbjct: 63 GRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG 122 Query: 115 GIDKEERRKRALSAIDLIGLDGFESAHTT--EISGGMLQRVGFARAFVVFPSLLLMDEPF 172 + E RKRA+ ++ +GL E ++SGGM QRV A A + P LL+ DEP Sbjct: 123 KGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPT 182 Query: 173 SALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 +ALDV T + L DL E + ++L +TH++ + DRV+V G I E Sbjct: 183 TALDVTTQAQILDLLKDLQRELGM---AVLFITHDLGVVAELADRVVVMYK--GEIVET 236 >gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 242 Score = 158 bits (402), Expect = 2e-39 Identities = 85/236 (36%), Positives = 128/236 (54%), Gaps = 20/236 (8%) Query: 24 KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD 83 K+ G ++ +N ++ GE + L+G SGSGK+T +++I L+ P+SG++ G+ I++ Sbjct: 8 KRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIRE 67 Query: 84 PP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLD--G 136 + I V Q LFP +TV EN+ L K KE+ R+RA + L+GLD Sbjct: 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAE 127 Query: 137 FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL 196 F + E+SGG QRVG ARA P LLLMDEPF ALD +T + L+ + L E Sbjct: 128 FADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELG- 186 Query: 197 PIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIA-----EEVLISIPHPRNRLSPEF 247 ++++ VTH+I+EA + DR+ + G I +E+L P N EF Sbjct: 187 --KTIVFVTHDIDEAFRLADRIAIM--KNGEIVQVGTPDEILR---SPANDFVAEF 235 >gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 263 Score = 156 bits (397), Expect = 9e-39 Identities = 86/252 (34%), Positives = 138/252 (54%), Gaps = 25/252 (9%) Query: 5 AIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA 64 + L+E++ + +SF G+ ++LD V+ +V GEI+ +LG SGSGKSTLLR+I Sbjct: 2 SASPEPLIEVRGVTKSF------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLIL 55 Query: 65 GLVSPSSGQVLFKGKKIKDPPKD--------ISVVFQTFALFPWLTVLENVELGLKA-KG 115 GL+ P G++L G+ I ++ + V+FQ ALF LTV ENV L+ Sbjct: 56 GLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTK 115 Query: 116 IDKEERRKRALSAIDLIGLDG-FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSA 174 + + R+ L ++L+GL G + +E+SGGM +RV ARA + P LL +DEP S Sbjct: 116 LPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSG 175 Query: 175 LDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIA----E 230 LD ++A + + +L L + +MVTH+++ + + DRV V + G++ Sbjct: 176 LDPISAGVIDELIRELNDALGLTV---IMVTHDLDSLLTIADRVAVLAD--GKVIAEGTP 230 Query: 231 EVLISIPHPRNR 242 E L++ P R Sbjct: 231 EELLASDDPWVR 242 >gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.. Length = 228 Score = 155 bits (394), Expect = 2e-38 Identities = 86/234 (36%), Positives = 127/234 (54%), Gaps = 20/234 (8%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 LLE++++ SF G++ LD V+F++ GE +GL+G SGSGKSTL R I GL+ P+ Sbjct: 1 LLEVKNLSVSFPTGG--GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT 58 Query: 71 SGQVLFKGKKIKDPP--------KDISVVFQ--TFALFPWLTVLENVELGLKAKGI--DK 118 SG ++F GK + K+I +VFQ +L P +T+ E + L+ G K Sbjct: 59 SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKK 118 Query: 119 EERRKRALSAIDLIGLD-GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177 E R++ L + +GL + + E+SGG QRV ARA + P LL+ DEP SALDV Sbjct: 119 EARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDV 178 Query: 178 LTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 + L L E L ++L +TH++ + DRV V + G+I EE Sbjct: 179 SVQAQILDLLKKLQEELGL---TLLFITHDLGVVAKIADRVAVMYA--GKIVEE 227 >gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 214 Score = 155 bits (394), Expect = 2e-38 Identities = 81/197 (41%), Positives = 109/197 (55%), Gaps = 16/197 (8%) Query: 42 SGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG-------KKIKDPPKD--ISVVF 92 + E+ G+ G SG+GKSTLLR IAGL P G ++ G KKI PP+ I +VF Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81 Query: 93 QTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQR 152 Q +ALFP L V EN+ GLK K E R +DL+GLD + + ++SGG QR Sbjct: 82 QQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQR 139 Query: 153 VGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAV 212 V ARA P LLL+DEPFSALD L +L + +P ++ VTH++ EA Sbjct: 140 VALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIP---VIFVTHDLSEAE 196 Query: 213 LMCDRVLVFSSNPGRIA 229 + DR++V GR+ Sbjct: 197 YLADRIVVMED--GRLQ 211 >gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.. Length = 211 Score = 152 bits (387), Expect = 1e-37 Identities = 71/202 (35%), Positives = 110/202 (54%), Gaps = 10/202 (4%) Query: 27 SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP- 85 G LD ++ + GE V ++G +GSGKSTLLR++ GL+ P+SG+VL GK + Sbjct: 11 DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSL 70 Query: 86 ----KDISVVFQ-TFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESA 140 + + +VFQ F TV E V GL+ G+ +EE +R A++L+GL+G Sbjct: 71 KELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDR 130 Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200 +SGG QRV A + P +LL+DEP + LD L L L EG+ + Sbjct: 131 SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGK----T 186 Query: 201 MLMVTHNIEEAVLMCDRVLVFS 222 +++VTH+++ + + DRV+V Sbjct: 187 IIIVTHDLDLLLELADRVIVLE 208 >gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 241 Score = 149 bits (377), Expect = 2e-36 Identities = 77/236 (32%), Positives = 120/236 (50%), Gaps = 26/236 (11%) Query: 24 KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG----- 78 K L V+ +++ GE V L+G SG+GKSTLLR + GLV P+SG VL G Sbjct: 8 KTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINK 67 Query: 79 ---KKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAK--------GIDKEERRKRALS 127 K ++ + I ++FQ F L L+VLENV G + G+ +E ++RAL+ Sbjct: 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALA 127 Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187 A++ +GL ++SGG QRV ARA + P L+L DEP ++LD ++ + L Sbjct: 128 ALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLL 187 Query: 188 IDLWIEGRLPIESMLMVTHNIEEAVLMCDRVL-------VFSSNPGRIAEEVLISI 236 + E + + ++ H ++ A DR++ VF P + +EVL I Sbjct: 188 KRINREEGITV---IVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTDEVLDEI 240 >gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 252 Score = 148 bits (376), Expect = 2e-36 Identities = 78/231 (33%), Positives = 119/231 (51%), Gaps = 18/231 (7%) Query: 10 RLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP 69 LL ++++ S L+ V+ + GE +G++G SGSGKSTL R++AGL P Sbjct: 2 TLLSVRNL--SIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP 59 Query: 70 SSGQVLFKGKKI------KDPPKDISVVFQ--TFALFPWLTVLENVELGLKAKGIDKEER 121 SSG +L GK + K + + +VFQ +L P TV + L+ G+ K ++ Sbjct: 60 SSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQ 119 Query: 122 RKRALSAIDLIGLD-GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180 R +D +GL F E+SGG QR+ ARA + P LL++DEP SALDV Sbjct: 120 --RIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQ 177 Query: 181 ENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 + L++L E L + L ++H++ MCDR+ V + G+I E Sbjct: 178 AQILNLLLELKKERGL---TYLFISHDLALVEHMCDRIAVMDN--GQIVEI 223 >gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.. Length = 213 Score = 148 bits (375), Expect = 3e-36 Identities = 71/201 (35%), Positives = 110/201 (54%), Gaps = 12/201 (5%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD 87 G VL+ V+F V GE + ++G +G+GKSTLL+ I GL+ P+SG + GK ++ K Sbjct: 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKR 69 Query: 88 ISVVFQTFAL---FPWLTVLENVELGLKAK----GIDKEERRKRALSAIDLIGLDGFESA 140 I V Q ++ FP ++V + V +GL + + + A++ +GL Sbjct: 70 IGYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR 128 Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200 E+SGG QRV ARA V P LLL+DEPF+ +D T E++ L +L EG + Sbjct: 129 QIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGM----T 184 Query: 201 MLMVTHNIEEAVLMCDRVLVF 221 +L+VTH++ + DRVL+ Sbjct: 185 ILVVTHDLGLVLEYFDRVLLL 205 >gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 173 Score = 147 bits (374), Expect = 4e-36 Identities = 70/221 (31%), Positives = 112/221 (50%), Gaps = 52/221 (23%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 +E++++ + + G LD ++ V GEI GLLG +G+GK+TL++II GL+ P S Sbjct: 1 IEVRNLSKRY------GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS 54 Query: 72 GQVLFKGKKIKDPPKD----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALS 127 G++ GK IK P++ I + + +L+ LTV EN++L Sbjct: 55 GEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKL------------------ 96 Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187 SGGM QR+ A+A + P LL++DEP S LD + L Sbjct: 97 ------------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELL 138 Query: 188 IDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228 +L EG+ ++L+ +H +EEA +CDRV + ++ GRI Sbjct: 139 RELKKEGK----TILLSSHILEEAERLCDRVAILNN--GRI 173 >gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).. Length = 236 Score = 146 bits (370), Expect = 1e-35 Identities = 83/236 (35%), Positives = 124/236 (52%), Gaps = 29/236 (12%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 LE++ + + F G L+ LD V+F+V GEI GL+G +G+GK+TL +I+G + P+S Sbjct: 1 LEVRGLTKRF------GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTS 54 Query: 72 GQVLFKGKKIKDPPKD------ISVVFQTFALFPWLTVLENVELGLKAKG---------- 115 G VLF G+ I P I FQ LFP LTVLENV + +A+ Sbjct: 55 GSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARAR 114 Query: 116 IDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175 ++ E R+RA ++ +GL E+S G +R+ ARA P LLL+DEP + L Sbjct: 115 REEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGL 174 Query: 176 DVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGR-IAE 230 + E L + +L G ++L+V H+++ + + DRV V GR IAE Sbjct: 175 NPEETEELAELIRELRERGI----TVLLVEHDMDVVMSLADRVTVLDQ--GRVIAE 224 >gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]. Length = 254 Score = 144 bits (366), Expect = 4e-35 Identities = 73/221 (33%), Positives = 121/221 (54%), Gaps = 20/221 (9%) Query: 8 DNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67 ++E++++ S+ GN VL+ ++ +V GEI L+G +G+GKSTLL+ I GL+ Sbjct: 1 MMPMIEVENLTVSY------GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL 54 Query: 68 SPSSGQVLFKGKKIK--DPPKDISVVFQTFAL---FPWLTVLENVELGLKAK----GIDK 118 PSSG++ GK ++ I V Q ++ FP +TV + V LG K Sbjct: 55 KPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLN 113 Query: 119 EERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVL 178 ++ +++ A++ +G++ E+SGG QRV ARA P LLL+DEPF+ +DV Sbjct: 114 KKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVA 173 Query: 179 TAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVL 219 + + L +L EG+ ++LMVTH++ + DRV+ Sbjct: 174 GQKEIYDLLKELRQEGK----TVLMVTHDLGLVMAYFDRVI 210 >gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]. Length = 500 Score = 144 bits (365), Expect = 5e-35 Identities = 73/221 (33%), Positives = 117/221 (52%), Gaps = 20/221 (9%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 LLE++ I +SF G + LD V+ V GE+ LLG +G+GKSTL++I++G+ P Sbjct: 8 LLELRGISKSF------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD 61 Query: 71 SGQVLFKGKKIKDP-PKD-----ISVVFQTFALFPWLTVLENVELG----LKAKGIDKEE 120 SG++L GK + P+D I+ V Q +L P L+V EN+ LG + ID++ Sbjct: 62 SGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKA 121 Query: 121 RRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180 R+RA + +GLD ++S Q V ARA +L++DEP +AL V Sbjct: 122 MRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKET 181 Query: 181 ENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221 E L + L +G +++ ++H ++E + DR+ V Sbjct: 182 ERLFDLIRRLKAQGV----AIIYISHRLDEVFEIADRITVL 218 Score = 104 bits (260), Expect = 7e-23 Identities = 63/228 (27%), Positives = 110/228 (48%), Gaps = 22/228 (9%) Query: 21 FSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGK- 79 ++ +SG V D V+F V +GEI+G+ G G+G++ L R + G SSG++L GK Sbjct: 264 LEVRNLSGGGKVRD-VSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKP 322 Query: 80 -KIKDPPKDIS--VVF-----QTFALFPWLTVLENVELG-----LKAKGIDKEERRKRAL 126 +I+ P I + + ++ L +++ EN+ L + ID+ + R A Sbjct: 323 VRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAE 382 Query: 127 SAIDLIGLDGF-ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRT 185 I + + +SGG Q+V AR P +L++DEP +DV + Sbjct: 383 RYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYR 442 Query: 186 DLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVL 233 + +L EG+ ++LM++ + E + + DR+LV GRI E+ Sbjct: 443 LIRELAAEGK----AILMISSELPELLGLSDRILVMRE--GRIVGELD 484 >gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.. Length = 220 Score = 143 bits (363), Expect = 8e-35 Identities = 69/216 (31%), Positives = 118/216 (54%), Gaps = 13/216 (6%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 L+I+++ +++ G +D ++ NV GEI GLLG +G+GK+T L+++ G + P+S Sbjct: 1 LQIRNLTKTYK----KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS 56 Query: 72 GQVLFKGKKIKDPPKD----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALS 127 G G I+ K + Q ALF LTV E++ + KG+ K E ++ Sbjct: 57 GTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVEL 116 Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187 + ++GL + +SGGM +++ A A + PS+LL+DEP S LD + + DL Sbjct: 117 LLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAI-WDL 175 Query: 188 IDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSS 223 I +GR S+++ TH+++EA +CDR+ + S Sbjct: 176 ILEVRKGR----SIILTTHSMDEAEALCDRIAIMSD 207 >gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 258 Score = 143 bits (361), Expect = 1e-34 Identities = 78/228 (34%), Positives = 123/228 (53%), Gaps = 26/228 (11%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF--------KGKKIKD 83 L VN ++ GE+V ++G SG+GKSTLLR + GLV P+SG++LF KGK+++ Sbjct: 19 ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRK 78 Query: 84 PPKDISVVFQTFALFPWLTVLENVELGLKAK--------GIDKEERRKRALSAIDLIGLD 135 +DI ++FQ F L P L+VLENV LG G+ +E + +AL A++ +G+ Sbjct: 79 LRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL 138 Query: 136 GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195 + +SGG QRV ARA V P ++L DEP ++LD +A+ + L D+ E Sbjct: 139 DKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDG 198 Query: 196 LPIESMLMVTHNIEEAVLMCDRVL-------VFSSNPGRIAEEVLISI 236 + + ++ H ++ A DR++ VF + +E L I Sbjct: 199 ITV---IVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDEALDEI 243 >gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 316 Score = 141 bits (358), Expect = 3e-34 Identities = 80/242 (33%), Positives = 132/242 (54%), Gaps = 28/242 (11%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP- 69 LLE++++ SF G + +D V+F + GEI+G++G SGSGKS L + I GL+ Sbjct: 1 LLEVKNLSVSFPTDA--GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKP 58 Query: 70 ----SSGQVLFKGKKIKDPP---------KDISVVFQ--TFALFPWLTVLENVELGLKA- 113 G++LF GK + K+I+++FQ +L P +T+ + + L+ Sbjct: 59 NARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH 118 Query: 114 -KGIDKEERRKRALSAIDLIGLDGFES---AHTTEISGGMLQRVGFARAFVVFPSLLLMD 169 KG+ K+E ++RA+ ++L+G+ E ++ E+SGGM QRV A A + P LL+ D Sbjct: 119 GKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIAD 178 Query: 170 EPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIA 229 EP +ALDV + L +L E +++++TH++ + DRV V + GRI Sbjct: 179 EPTTALDVTVQAQILDLLKELQREKGT---ALILITHDLGVVAEIADRVAVMYA--GRIV 233 Query: 230 EE 231 EE Sbjct: 234 EE 235 >gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 235 Score = 141 bits (358), Expect = 3e-34 Identities = 71/223 (31%), Positives = 112/223 (50%), Gaps = 19/223 (8%) Query: 9 NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68 R++E +++ + G L V+ + GE V L+G +GSGKSTLL+++ GL+ Sbjct: 1 LRMIEAENLSFRYP-----GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK 55 Query: 69 PSSGQVLFKGKKIKDPP------KDISVVFQ---TFALFPWLTVLENVELGLKAKGIDKE 119 P+SG+VL G + + +VFQ P TV + V GL+ G+ +E Sbjct: 56 PTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP--TVEDEVAFGLENLGLPRE 113 Query: 120 ERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179 E +R A++L+GL+ +SGG QRV A + P +LL+DEP + LD Sbjct: 114 EIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKG 173 Query: 180 AENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFS 222 L L L EG ++++VTH++E + DRV+V Sbjct: 174 RRELLELLKKLKEEGGK---TIIIVTHDLELVLEYADRVVVLD 213 >gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).. Length = 227 Score = 139 bits (351), Expect = 2e-33 Identities = 75/224 (33%), Positives = 111/224 (49%), Gaps = 23/224 (10%) Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV-----SPSSGQVLF 76 L G+ L ++ ++ GEI L+G SG GKSTLLR++ L +P G+VL Sbjct: 5 DLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLL 64 Query: 77 KGKKIKDPPKD-------ISVVFQTFALFPWLTVLENVELGLKAKGI-DKEERRKRALSA 128 GK I D D + +VFQ FP ++ +NV GL+ GI KEE +R A Sbjct: 65 DGKDIYDLDVDVLELRRRVGMVFQKPNPFP-GSIYDNVAYGLRLHGIKLKEELDERVEEA 123 Query: 129 IDLIGLDGFES--AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186 + L H +SGG QR+ ARA P +LL+DEP SALD ++ + Sbjct: 124 LRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIE-- 181 Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 +L E + ++++VTHN+++A + DR GR+ E Sbjct: 182 --ELIAELKKEY-TIVIVTHNMQQAARVADRTAFL--LNGRLVE 220 >gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.. Length = 208 Score = 137 bits (347), Expect = 6e-33 Identities = 71/212 (33%), Positives = 112/212 (52%), Gaps = 13/212 (6%) Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82 L K G VLD ++ +V GEI G LG +G+GK+T ++II GL+ P SG++ F GK + Sbjct: 6 LTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ 65 Query: 83 D---PPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFES 139 + I + + +P LT EN+ L + GI R+KR +D++GL Sbjct: 66 KNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAK 121 Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199 S GM QR+G A A + P LL++DEP + LD + LR ++ L +G Sbjct: 122 KKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGI---- 177 Query: 200 SMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 ++L+ +H + E + DR+ + N G++ EE Sbjct: 178 TVLISSHLLSEIQKVADRIGII--NKGKLIEE 207 >gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1228 Score = 137 bits (346), Expect = 7e-33 Identities = 71/235 (30%), Positives = 119/235 (50%), Gaps = 22/235 (9%) Query: 7 KDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL 66 +E +++C S+ + ++ +L V+ + SG+ V L+G SGSGKSTL++++A Sbjct: 346 SIKGEIEFRNVCFSYPSRP---DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARF 402 Query: 67 VSPSSGQVLFKGKKIKDPPKD-----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEER 121 P+SG+VL G+ I++ I +V Q LF T+ EN+ G ++ E Sbjct: 403 YDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGKPDATREEIEE 461 Query: 122 RKRALSAIDLI-----GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176 +A +A D I G D ++SGG QR+ ARA V P +LL+DE SALD Sbjct: 462 AAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALD 521 Query: 177 VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 +E + + +D +GR + ++V H + + D++ V G+I E+ Sbjct: 522 A-ESERVVQEALDKASKGR----TTIVVAHRLST-IRNADKIAVMEE--GKIVEQ 568 Score = 93.0 bits (231), Expect = 1e-19 Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 19/213 (8%) Query: 29 NLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP--- 85 ++ VL+ ++ ++ +G+ V L+G SGSGKST++ ++ P +G+V G IKD Sbjct: 1002 DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKW 1061 Query: 86 --KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-----GLDGFE 138 K I +V Q LF T+ EN+ G + ++ + +A + I G D Sbjct: 1062 LRKQIGLVSQEPVLFN-GTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRV 1120 Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198 ++SGG QR+ ARA + P +LL+DE SALD +E + + +D +EGR I Sbjct: 1121 GERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDS-ESERVVQEALDRAMEGRTTI 1179 Query: 199 ESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 ++ H + + D + V + G++ E+ Sbjct: 1180 ----VIAHRL-STIQNADVIAVLKN--GKVVEQ 1205 >gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]. Length = 268 Score = 137 bits (346), Expect = 7e-33 Identities = 88/275 (32%), Positives = 132/275 (48%), Gaps = 50/275 (18%) Query: 11 LLEIQDICQSFSLKKISG---NLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67 LLE++++ + F + K G + +D V+F++ GE +GL+G SG GKSTL R+I GL Sbjct: 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE 63 Query: 68 SPSSGQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALS 127 P+SG++LF+GK I + KEERR+R L Sbjct: 64 EPTSGEILFEGKDITK--------------------------------LSKEERRERVLE 91 Query: 128 AIDLIGLDG-FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186 ++ +GL F + E+SGG QR+G ARA + P L++ DEP SALDV + Sbjct: 92 LLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNL 151 Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE----EVLISIPHPRNR 242 L DL E L + L ++H++ + DR+ V G+I E E + S P Sbjct: 152 LKDLQEELGL---TYLFISHDLSVVRYISDRIAVMYL--GKIVEIGPTEEVFSNP----- 201 Query: 243 LSPEFRQIVEKIYALMTKKEEKRLNPLENAPGSGI 277 L P + ++ + + KR PLE S I Sbjct: 202 LHPYTKALLSAVPVPDPRLRRKRRIPLEGEVPSPI 236 >gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]. Length = 501 Score = 136 bits (343), Expect = 2e-32 Identities = 75/219 (34%), Positives = 115/219 (52%), Gaps = 19/219 (8%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 LE++ I + F ++ D V+ +V GEI LLG +G+GKSTL++I+ GL P Sbjct: 4 ALEMRGITKRF------PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD 57 Query: 71 SGQVLFKGKKIK-DPPKD-----ISVVFQTFALFPWLTVLENVELGLKAK---GIDKEER 121 SG++ GK+++ P+D I +V Q F L P LTV EN+ LGL+ ID+ + Sbjct: 58 SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQA 117 Query: 122 RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAE 181 R R + GL A ++S G QRV +A LL++DEP + L A+ Sbjct: 118 RARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEAD 177 Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220 L L L EG+ +++ +TH ++E + + DRV V Sbjct: 178 ELFEILRRLAAEGK----TIIFITHKLKEVMAIADRVTV 212 Score = 89.4 bits (222), Expect = 2e-18 Identities = 69/240 (28%), Positives = 118/240 (49%), Gaps = 29/240 (12%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 +LE++D+ S+K G V D V+F V +GEIVG+ G +G+G+S L+ I+GL P+ Sbjct: 257 VLEVEDL----SVKDRRGVTAVKD-VSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA 311 Query: 71 SGQVLFKGKKIKD--PPKDI---SVVF-----QTFALFPWLTVLENVELG-------LKA 113 SG++L GK + P++ + + L L++ EN+ LG + Sbjct: 312 SGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRG 371 Query: 114 KGIDKEERRKRALSAIDLIGLD-GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPF 172 +D+ RK A I+ + A +SGG Q++ AR P LL+ +P Sbjct: 372 GFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPT 431 Query: 173 SALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV 232 LDV E + L++L G+ ++L+++ +++E + + DR+ V GRI V Sbjct: 432 RGLDVGAIEFIHERLLELRDAGK----AVLLISEDLDEILELSDRIAVIYE--GRIVGIV 485 >gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]. Length = 231 Score = 135 bits (342), Expect = 2e-32 Identities = 80/197 (40%), Positives = 114/197 (57%), Gaps = 8/197 (4%) Query: 37 NFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-KDPPKD--ISVVFQ 93 + V +GEIV +LG SG+GKSTLL +IAG +P+SG++L G PP + +S++FQ Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78 Query: 94 TFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRV 153 LF LTV +N+ LGL E+R++ +A +GL GF E+SGG QRV Sbjct: 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRV 138 Query: 154 GFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVL 213 AR V +LL+DEPFSALD + + L E ++ ++LMVTH+ E+A Sbjct: 139 ALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKM---TLLMVTHHPEDAAR 195 Query: 214 MCDRVLVFSSNPGRIAE 230 + DRV+ + GRIA Sbjct: 196 IADRVVFLDN--GRIAA 210 >gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.. Length = 218 Score = 134 bits (339), Expect = 4e-32 Identities = 71/225 (31%), Positives = 110/225 (48%), Gaps = 12/225 (5%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 ++ + + F K + +D V+F V GE+ GLLG +G+GK+T LR++AGL+ P Sbjct: 1 MITADALTKRFRDVK--KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD 58 Query: 71 SGQVLFKGKKIKDPPKD----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRAL 126 +G G + P + + V + L+ LT EN+E G+ +E R Sbjct: 59 AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLE 118 Query: 127 SAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186 D +G++ S GM Q+V ARA V P +LL+DEP + LDV+ LR Sbjct: 119 ELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREF 178 Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 + L G+ +L TH ++E +CDRV+V GR+ E Sbjct: 179 IRQLRALGK----CILFSTHIMQEVERLCDRVVVLHR--GRVVYE 217 >gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]. Length = 250 Score = 133 bits (337), Expect = 7e-32 Identities = 80/239 (33%), Positives = 123/239 (51%), Gaps = 30/239 (12%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 LLE++ + + F G L ++ V+ V GEIVGL+G +G+GK+TL +I G PS Sbjct: 4 LLEVRGLSKRF------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS 57 Query: 71 SGQVLFKGKKIKDPP------KDISVVFQTFALFPWLTVLENVELGLKAKGI-------- 116 SG V+F+G+ I P I+ FQ LFP LTVLENV +G A+ Sbjct: 58 SGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRP 117 Query: 117 ----DKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPF 172 ++ E R+RA ++ +GL +S G +R+ ARA P LLL+DEP Sbjct: 118 RARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPA 177 Query: 173 SALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGR-IAE 230 + L+ E L + +L G + I L++ H+++ + + DR++V + G IAE Sbjct: 178 AGLNPEETEELAELIRELRDRGGVTI---LLIEHDMKLVMGLADRIVVLNY--GEVIAE 231 >gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]. Length = 258 Score = 132 bits (335), Expect = 1e-31 Identities = 81/231 (35%), Positives = 119/231 (51%), Gaps = 22/231 (9%) Query: 20 SFSLKKIS---GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF 76 ++ +S G +LD ++F++ GEI G+LG +GSGKSTLL+ +AGL+ P SG+VL Sbjct: 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLL 61 Query: 77 KGKKIKDPP-----KDISVVFQTFALFPWLTVLENVELG----LKAKGIDKEERRKRALS 127 GK I K ++ V Q+ + LTV E V LG L G +E + Sbjct: 62 DGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEE 121 Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187 A++L+GL+ E+SGG QRV ARA +LL+DEP S LD+ + L Sbjct: 122 ALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELL 181 Query: 188 IDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI-----AEEVL 233 DL E L +++MV H++ A D +++ G+I EEVL Sbjct: 182 RDLNREKGL---TVVMVLHDLNLAARYADHLILL--KDGKIVAQGTPEEVL 227 >gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]. Length = 223 Score = 131 bits (331), Expect = 4e-31 Identities = 80/214 (37%), Positives = 112/214 (52%), Gaps = 14/214 (6%) Query: 24 KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-- 81 K G L V+F++ GE V L G SG+GKSTLL++I G P+ G++L G + Sbjct: 9 KAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSR 68 Query: 82 ---KDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLD 135 ++ P + I VVFQ F L P TV ENV L L+ G E R+R +DL+GL Sbjct: 69 LKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK 128 Query: 136 GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195 A +++SGG QRV ARA V P++LL DEP LD + +++ L+ E Sbjct: 129 HKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSW----EIMRLFEEIN 184 Query: 196 LPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIA 229 ++LM TH++E M RVL GR+ Sbjct: 185 RLGTTVLMATHDLELVNRMRHRVLALED--GRLV 216 >gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 210 Score = 129 bits (325), Expect = 2e-30 Identities = 71/210 (33%), Positives = 123/210 (58%), Gaps = 11/210 (5%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 LE++++ + F G + LD ++F+V GEI GLLG +G+GK+T +R+I G++ P S Sbjct: 1 LEVENVTKRF------GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDS 54 Query: 72 GQVLFKGKKIKDPPKD-ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAID 130 G+VLF GK + ++ I + + L+P + V++ + + KG+ KEE R+R ++ Sbjct: 55 GEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLE 114 Query: 131 LIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190 + L + + E+S G Q+V F A + P LL++DEPFS LD + E L+ + +L Sbjct: 115 RLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIREL 174 Query: 191 WIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220 G+ ++++ TH +E +CDRVL+ Sbjct: 175 ARAGK----TVILSTHQMELVEELCDRVLL 200 >gnl|CDD|34368 COG4754, COG4754, Uncharacterized conserved protein [Function unknown]. Length = 157 Score = 128 bits (323), Expect = 3e-30 Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 3/153 (1%) Query: 276 GIGIFLRHVSTNLLSGLIEAVMAPPYNGKADLPDLANSLQLEADRLFHIGESLQLLQLVN 335 + L + L GL+ + +NG+ADLP L ++++ D L I E+ LL LV Sbjct: 1 MTEMRLPNARIAQLVGLLYVLNNI-FNGRADLPYLEKEMEVDIDDLMPIVETASLLGLVT 59 Query: 336 LSGGDITLTESGIRFANLDTDSRKKLFAKQLLQHVPLVNLIRRVLDERRLHSAPAARFRN 395 GDI LT+ G + RK+LF ++L P +R LD+ + A F Sbjct: 60 AESGDIILTDEGKEYVESPIRERKELFRQKLKNIEPFATHLRLRLDD--IEEAMEVLFEE 117 Query: 396 ELEDYMSEEYAQETIDTVVSWGRYAELFSYDEQ 428 ELE Y S A + + ++ WG YAEL YD++ Sbjct: 118 ELETYNSPSGAADLLKILIEWGVYAELLEYDDE 150 >gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.. Length = 222 Score = 127 bits (322), Expect = 4e-30 Identities = 74/226 (32%), Positives = 108/226 (47%), Gaps = 19/226 (8%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 LE++++ + G +L V+ V GEIV LLGR+G+GK+TLL+ I GL+ P S Sbjct: 1 LEVENLNAGY------GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRS 54 Query: 72 GQVLFKGKKIKDPPKD------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA 125 G + F G+ I P I V + +FP LTV EN+ LG A+ K + R Sbjct: 55 GSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLER 114 Query: 126 LSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRT 185 + + L +SGG Q + ARA + P LLL+DEP L E + Sbjct: 115 VYELFPR-LKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE 173 Query: 186 DLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 + +L EG ++L+V N A+ + DR V GR+ E Sbjct: 174 AIRELRDEGV----TILLVEQNARFALEIADRAYVLER--GRVVLE 213 >gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.. Length = 232 Score = 126 bits (317), Expect = 1e-29 Identities = 66/207 (31%), Positives = 109/207 (52%), Gaps = 10/207 (4%) Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82 L K G V++ V+ +V GEIVGLLG +G+GK+T +I GLV P SG++L G+ I Sbjct: 6 LSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDIT 65 Query: 83 DPPKD------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDG 136 P I + Q ++F LTV EN+ L+ +G+ K+ER ++ ++ + Sbjct: 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH 125 Query: 137 FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL 196 + + +SGG +RV ARA P LL+DEPF+ +D + ++++ + L G Sbjct: 126 LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGI- 184 Query: 197 PIESMLMVTHNIEEAVLMCDRVLVFSS 223 +L+ HN+ E + + DR + Sbjct: 185 ---GVLITDHNVRETLSITDRAYIIYE 208 >gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 220 Score = 126 bits (317), Expect = 2e-29 Identities = 72/213 (33%), Positives = 111/213 (52%), Gaps = 9/213 (4%) Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82 L K G+ + V+F V GEI GLLG +G+GK+T ++++ L+ P+SG+ G + Sbjct: 6 LVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVV 65 Query: 83 DPPKD----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFE 138 P++ I +VFQ ++ LT EN+ + + G+ ERR+R +D +GL Sbjct: 66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAA 125 Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198 SGGM +R+ AR+ V P +L +DEP LD T ++ + L E + I Sbjct: 126 DRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTI 185 Query: 199 ESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 L+ TH +EEA +CDRV + GRI E Sbjct: 186 ---LLTTHYMEEAEQLCDRVAIIDH--GRIIAE 213 >gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 211 Score = 125 bits (316), Expect = 2e-29 Identities = 73/214 (34%), Positives = 113/214 (52%), Gaps = 12/214 (5%) Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81 +L K G LD V+ + G + GLLG +G+GK+TL+RI+A L PSSG + G+ + Sbjct: 5 NLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDV 63 Query: 82 KDPPKD----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGF 137 P+ I + Q F ++P TV E ++ KGI +E + R ++L+ L Sbjct: 64 LKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDR 123 Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197 +SGGM +RVG A+A V PS+L++DEP + LD R L +L E R+ Sbjct: 124 AKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSEL-GEDRIV 182 Query: 198 IESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 I S TH +E+ +C++V V + G++ E Sbjct: 183 ILS----THIVEDVESLCNQVAVLNK--GKLVFE 210 >gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 211 Score = 123 bits (310), Expect = 9e-29 Identities = 81/194 (41%), Positives = 111/194 (57%), Gaps = 10/194 (5%) Query: 40 VSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD-PPKD--ISVVFQTFA 96 + GEI ++G SGSGKSTLL +IAG +P SG+VL G + PP D +S++FQ Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENN 80 Query: 97 LFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFA 156 LF LTV +NV LGL E R+ A+ +GL G E E+SGG QRV A Sbjct: 81 LFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALA 140 Query: 157 RAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE-SMLMVTHNIEEAVLMC 215 R V +LL+DEPF+ALD LR +++DL ++ + ++LMVTH E+A + Sbjct: 141 RVLVRDKPVLLLDEPFAALD----PALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLA 196 Query: 216 DRVLVFSSNPGRIA 229 RV+ + GRIA Sbjct: 197 QRVVFLDN--GRIA 208 >gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.. Length = 214 Score = 123 bits (310), Expect = 1e-28 Identities = 72/205 (35%), Positives = 104/205 (50%), Gaps = 12/205 (5%) Query: 24 KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD 83 K LD +N ++S+GE V L+G SG+GKSTLL++I P+SG + G+ + D Sbjct: 8 KTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSD 67 Query: 84 PPKD--------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLD 135 I VVFQ F L P V ENV L+ G+ E RKR +A++L+GL Sbjct: 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS 127 Query: 136 GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195 A E+SGG QRV ARA V P++L+ DEP LD T ++++L + Sbjct: 128 HKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTT----WEIMNLLKKIN 183 Query: 196 LPIESMLMVTHNIEEAVLMCDRVLV 220 ++++ TH E RV+ Sbjct: 184 KAGTTVVVATHAKELVDTTRHRVIA 208 >gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 228 Score = 123 bits (309), Expect = 1e-28 Identities = 83/231 (35%), Positives = 124/231 (53%), Gaps = 17/231 (7%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 ++E+ + S ++ + G L +L V V GE V ++G SGSGKSTLL ++AGL PS Sbjct: 6 IIEVHHL--SKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS 63 Query: 71 SGQVLFKGKKIKDPPKD---------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEER 121 SG+V G+ + +D + VFQ+F L P LT LENV L L+ +G + Sbjct: 64 SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADS 123 Query: 122 RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAE 181 R A + ++ +GL + + ++SGG QRV ARAF P +L DEP LD T + Sbjct: 124 RAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183 Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV 232 + DL L+ R ++++VTH+ + A CDR L S GR+ E+ Sbjct: 184 KI-ADL--LFALNRERGTTLVLVTHDPQLAA-RCDRQLRLRS--GRLVEDA 228 >gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]. Length = 245 Score = 121 bits (304), Expect = 5e-28 Identities = 75/214 (35%), Positives = 112/214 (52%), Gaps = 13/214 (6%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 +LE+ D+ +S+ K + + V+F GEI GLLG +G+GK+TLLR+IA L+ P Sbjct: 1 MLEVTDLTKSYGSKVQA-----VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD 55 Query: 71 SGQVLFKGKKIKDPP----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRAL 126 SG+V G P + I V+F L+ LT EN++ + G+ ++E + R Sbjct: 56 SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIA 115 Query: 127 SAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186 + L + E S GM Q+V ARA V PS+L++DEP S LD+ T Sbjct: 116 ELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDF 175 Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220 + L EGR I S +H ++E +CDRV+V Sbjct: 176 IKQLKNEGRAVIFS----SHIMQEVEALCDRVIV 205 >gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 300 Score = 120 bits (303), Expect = 6e-28 Identities = 67/210 (31%), Positives = 120/210 (57%), Gaps = 11/210 (5%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 LEI+ + +SF KK +D ++F V GEI GLLG +G+GK+T R+I GL+ P+ Sbjct: 3 LEIEGVTKSFGDKK------AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTE 56 Query: 72 GQVLFKGKKIKDPPKD-ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAID 130 G++ + G + K+ I + + L+P +TV + ++ + KG+ K E +K+ + ++ Sbjct: 57 GEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLE 116 Query: 131 LIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190 + + G ++ E+S G Q++ F A + P LL++DEPFS LD + E L+ + +L Sbjct: 117 RLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFEL 176 Query: 191 WIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220 EG +++ +H +E +CDR+L+ Sbjct: 177 KEEGA----TIIFSSHRMEHVEELCDRLLM 202 >gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 171 Score = 120 bits (303), Expect = 7e-28 Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 53/215 (24%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 +E +++ S+ VL V+ + GE V ++G SGSGKSTLL+++ L P+S Sbjct: 1 IEFKNVSFSYP----GRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTS 56 Query: 72 GQVLFKGKKIKDPPKD-----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRAL 126 G++L G ++D + I+ V Q LF T+ EN+ Sbjct: 57 GEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI------------------- 96 Query: 127 SAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186 +SGG QR+ ARA + P +L++DE SALD T E L + Sbjct: 97 ------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPET-EALILE 137 Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221 + +G+ +++++ H + + DR++V Sbjct: 138 ALRALAKGK----TVIVIAHRL-STIRDADRIIVL 167 >gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]. Length = 256 Score = 120 bits (302), Expect = 7e-28 Identities = 80/240 (33%), Positives = 122/240 (50%), Gaps = 33/240 (13%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 LE++D+ + + G VL V+ ++G+++ ++G SGSGKST LR I L PS+ Sbjct: 7 LEVEDLHKRY------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA 60 Query: 72 GQVLFKGKKIKDPP------------------KDISVVFQTFALFPWLTVLENV-ELGLK 112 G + G++I+ + +VFQ F L+ +TVLENV E + Sbjct: 61 GSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVH 120 Query: 113 AKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPF 172 G+ K E +RA + +G+ A+ +SGG QRV ARA + P ++L DEP Sbjct: 121 VLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPT 180 Query: 173 SALDV-LTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 SALD L E L+ + DL EGR +M++VTH + A + V+ G+I EE Sbjct: 181 SALDPELVGEVLKV-MQDLAEEGR----TMVVVTHEMGFARDVSSHVIFLHQ--GKIEEE 233 >gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]. Length = 237 Score = 120 bits (303), Expect = 7e-28 Identities = 76/228 (33%), Positives = 113/228 (49%), Gaps = 19/228 (8%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 +LE++++ + G + L V+ V GEIV LLGR+G+GK+TLL+ I GLV P Sbjct: 3 MLEVENLSAGY------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR 56 Query: 71 SGQVLFKGKKIKDPPKD------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKR 124 SG+++F G+ I P I+ V + +FP LTV EN+ LG A+ + + R Sbjct: 57 SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDL 116 Query: 125 ALSAIDLI-GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL 183 +L L + +SGG Q + ARA + P LLL+DEP L E + Sbjct: 117 E-EVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI 175 Query: 184 RTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 + +L EG + I L+V N A+ + DR V + GRI Sbjct: 176 FEAIKELRKEGGMTI---LLVEQNARFALEIADRGYVLEN--GRIVLS 218 >gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.. Length = 224 Score = 120 bits (302), Expect = 9e-28 Identities = 65/212 (30%), Positives = 102/212 (48%), Gaps = 13/212 (6%) Query: 20 SFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGK 79 K G L V+F V GE +GL+GR+G+GKSTLLR++AG+ P SG V +G+ Sbjct: 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR 84 Query: 80 KIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFES 139 + F P LT EN+ L + G+ ++E ++ I+ L F Sbjct: 85 VS--SLLGLGGGFN-----PELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFID 137 Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199 S GM R+ FA A + P +LL+DE + D E + L +L +G+ Sbjct: 138 LPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGK---- 193 Query: 200 SMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 ++++V+H+ +CDR LV G+I + Sbjct: 194 TVILVSHDPSSIKRLCDRALVLEK--GKIRFD 223 >gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.. Length = 205 Score = 118 bits (298), Expect = 3e-27 Identities = 68/216 (31%), Positives = 113/216 (52%), Gaps = 18/216 (8%) Query: 13 EIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSG 72 I++I S+ +LD ++ ++ +GEI+ L G++G+GK+TL +I+AGL+ SSG Sbjct: 1 RIENISFSYK-----KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG 55 Query: 73 QVLFKGKKI--KDPPKDISVVFQT--FALFPWLTVLENVELGLKAKGIDKEERRKRALSA 128 +L GK I K+ K I V Q + LF +V E + LGLK E+ Sbjct: 56 SILLNGKPIKAKERRKSIGYVMQDVDYQLFT-DSVREELLLGLKELDAGNEQAET----V 110 Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188 + + L + H +SGG QR+ A A + LL+ DEP S LD E + + Sbjct: 111 LKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIR 170 Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSN 224 +L +G+ +++++TH+ E +CDRVL+ ++ Sbjct: 171 ELAAQGK----AVIVITHDYEFLAKVCDRVLLLANG 202 >gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.. Length = 180 Score = 117 bits (296), Expect = 5e-27 Identities = 67/195 (34%), Positives = 95/195 (48%), Gaps = 36/195 (18%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD 87 G VLD ++ ++ +GEIVG+LG +G+GKSTLL+ +AGL+ PSSG++L GK + Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSP- 68 Query: 88 ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRAL--SAIDLIGLDGFESAHTTEI 145 KE RK A A++L+GL E+ Sbjct: 69 ------------------------------KELARKIAYVPQALELLGLAHLADRPFNEL 98 Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVT 205 SGG QRV ARA P +LL+DEP S LD+ L L L E +++MV Sbjct: 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGK---TVVMVL 155 Query: 206 HNIEEAVLMCDRVLV 220 H++ A DRV++ Sbjct: 156 HDLNLAARYADRVIL 170 >gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]. Length = 534 Score = 117 bits (295), Expect = 6e-27 Identities = 78/239 (32%), Positives = 125/239 (52%), Gaps = 24/239 (10%) Query: 11 LLEIQDICQSFSLKK-----ISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAG 65 LLE++D+ F +K +L +D ++ + G+ +GL+G SGSGKSTL + Sbjct: 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLR 335 Query: 66 LVSPSSGQVLFKGKKIKDPP--------KDISVVFQT--FALFPWLTVLENVELGLK--A 113 L+ PS G++ F G+ I + + VVFQ +L P +TV + +E GL+ Sbjct: 336 LI-PSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHE 394 Query: 114 KGIDKEERRKRALSAIDLIGLDG-FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPF 172 + ER +R + A++ +GLD + + E SGG QR+ ARA ++ P L+L+DEP Sbjct: 395 PKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPT 454 Query: 173 SALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 SALD + L DL + L S L ++H++ +C RV+V G+I E+ Sbjct: 455 SALDRSVQAQVLDLLRDLQQKHGL---SYLFISHDLAVVRALCHRVIVMRD--GKIVEQ 508 Score = 99.1 bits (247), Expect = 2e-21 Identities = 71/244 (29%), Positives = 116/244 (47%), Gaps = 27/244 (11%) Query: 8 DNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL- 66 LL I+++ S + + G + + ++F++ +GE + L+G SGSGKS I GL Sbjct: 3 TMPLLSIRNL--SVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL 60 Query: 67 ----VSPSSGQVLFKGKKIKDPPK---------DISVVFQT--FALFPWLTVLENVELGL 111 + SG +LF G+ + + I ++FQ +L P T+ + + L Sbjct: 61 PSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVL 120 Query: 112 KA-KGIDKEERRKRALSAIDLIGLD---GFESAHTTEISGGMLQRVGFARAFVVFPSLLL 167 + +G+ + R RAL ++L+G+ A+ E+SGG QRV A A P LL+ Sbjct: 121 RLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLI 180 Query: 168 MDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGR 227 DEP +ALDV + L +L E + ++L +TH++ DRV V G Sbjct: 181 ADEPTTALDVTVQAQILDLLKELQAELGM---AILFITHDLGIVRKFADRVYVMQH--GE 235 Query: 228 IAEE 231 I E Sbjct: 236 IVET 239 >gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 352 Score = 117 bits (295), Expect = 6e-27 Identities = 66/210 (31%), Positives = 105/210 (50%), Gaps = 20/210 (9%) Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81 + ++ GN + NF + + I L G SGSGK++L+ +IAGL P G++ G+ + Sbjct: 5 NFRQRLGNFAL--DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVL 62 Query: 82 KDPPKDISV---------VFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI 132 D K I + VFQ LFP TV N+ G+ + ++ + L+ Sbjct: 63 VDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQ------LVALL 116 Query: 133 GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWI 192 G++ + +SGG QRV RA + P LLLMDEP ++LD+ + L L Sbjct: 117 GIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRD 176 Query: 193 EGRLPIESMLMVTHNIEEAVLMCDRVLVFS 222 E +PI L V+H+++E + + DRV+V Sbjct: 177 EINIPI---LYVSHSLDEVLRLADRVVVLE 203 >gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 157 Score = 116 bits (293), Expect = 9e-27 Identities = 71/206 (34%), Positives = 93/206 (45%), Gaps = 60/206 (29%) Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82 L G LD V+ + +GEIV L+G +GSGKSTLLR IAGL+ P+SG++L GK I Sbjct: 5 LSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIA 64 Query: 83 DPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGF 137 P + I V Q Sbjct: 65 KLPLEELRRRIGYVPQ-------------------------------------------- 80 Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197 +SGG QRV ARA ++ P LLL+DEP S LD + E L L +L EGR Sbjct: 81 -------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGR-- 131 Query: 198 IESMLMVTHNIEEAVLMCDRVLVFSS 223 ++++VTH+ E A L DRV+V Sbjct: 132 --TVIIVTHDPELAELAADRVIVLKD 155 >gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]. Length = 243 Score = 116 bits (291), Expect = 1e-26 Identities = 67/238 (28%), Positives = 118/238 (49%), Gaps = 25/238 (10%) Query: 8 DNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67 D L +++ +S+ +K V++ V+ V+SGEIVGLLG +G+GK+T +I GLV Sbjct: 1 DMSTLVAENLAKSYKKRK------VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLV 54 Query: 68 SPSSGQVLFKGKKIKDPPKD------ISVVFQTFALFPWLTVLENVELGLKAKGIDKE-- 119 P SG++L + I P I + Q ++F LTV +N+ L+ + D + Sbjct: 55 RPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKA 114 Query: 120 ERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179 ER++ + ++ + + +SGG +RV ARA P +L+DEPF+ +D + Sbjct: 115 ERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA 174 Query: 180 AENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRV-------LVFSSNPGRIAE 230 +++ + L G +L+ HN+ E + +CDR ++ +P I Sbjct: 175 VIDIQRIIKHLKDRGI----GVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 >gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 213 Score = 115 bits (290), Expect = 2e-26 Identities = 66/200 (33%), Positives = 101/200 (50%), Gaps = 13/200 (6%) Query: 21 FSLKKIS---GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS---SGQV 74 LK +S +L VNF ++ GEIV L+G SG GKSTLL + G ++ +G++ Sbjct: 3 LCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGEL 62 Query: 75 LFKGKKIKDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDL 131 +++ P + I ++FQ LFP L+V +N+ L A + RR A +A++ Sbjct: 63 WLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPAT-LKGNARRNAANAALER 121 Query: 132 IGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLW 191 GLDG +SGG RV RA + P LL+DEPFS LDV + R + Sbjct: 122 SGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV 181 Query: 192 IEGRLPIESMLMVTHNIEEA 211 +P + VTH++++ Sbjct: 182 RAAGIPT---VQVTHDLQDV 198 >gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.. Length = 220 Score = 114 bits (288), Expect = 4e-26 Identities = 76/214 (35%), Positives = 115/214 (53%), Gaps = 33/214 (15%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK--DPP---K 86 LD V+ + +GE V ++GR GSGKSTLL+++AGL P+SG VL G I+ DP + Sbjct: 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR 78 Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTT--- 143 +I V Q LF + T+ +N+ LG D E R L A +L G+ F + H Sbjct: 79 NIGYVPQDVTLF-YGTLRDNITLGAPL--ADDE----RILRAAELAGVTDFVNKHPNGLD 131 Query: 144 --------EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195 +SGG Q V ARA + P +LL+DEP SA+D+ + E L+ L + + Sbjct: 132 LQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERL-RQLLGDK 190 Query: 196 LPIESMLMVTHNIEEAVL-MCDRVLVFSSNPGRI 228 +++++TH ++L + DR++V S GRI Sbjct: 191 ----TLIIITHRP--SLLDLVDRIIVMDS--GRI 216 >gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism, General function prediction only]. Length = 885 Score = 111 bits (279), Expect = 3e-25 Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 11/206 (5%) Query: 23 LKKI-SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81 L K+ G + ++F V GE GLLG +G+GK+T +++ G P+SG+ L KG I Sbjct: 570 LSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDI 629 Query: 82 K------DPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLD 135 K + Q AL+ LT E++E + +G+ + + + L+GL Sbjct: 630 TVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLG 689 Query: 136 GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195 + + SGG +R+ FA A + PS++L+DEP + LD R L D+ R Sbjct: 690 PYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKA----RRHLWDIIARLR 745 Query: 196 LPIESMLMVTHNIEEAVLMCDRVLVF 221 +++++ +H++EEA +C R + Sbjct: 746 KNGKAIILTSHSMEEAEALCTRTAIM 771 >gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]. Length = 709 Score = 111 bits (279), Expect = 4e-25 Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 23/222 (10%) Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81 S + + VL+ ++ + GE V ++GRSGSGKSTLL+++ GL P G++L G + Sbjct: 478 SFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDL 537 Query: 82 KDPPKD-----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA-LSAIDL---- 131 D + V Q LF ++ EN+ LG EE + A L+ Sbjct: 538 NDIDLASLRRQVGYVLQDPFLFSG-SIRENIALG--NPEATDEEIIEAAQLAGAHEFIEN 594 Query: 132 --IGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLID 189 +G D +SGG QR+ ARA + P +LL+DE SALD T E + + Sbjct: 595 LPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPET-EAIILQNLL 653 Query: 190 LWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 ++GR I ++ H + + DR++V G+I E+ Sbjct: 654 QILQGRTVI----IIAHRL-STIRSADRIIVLDQ--GKIVEQ 688 >gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]. Length = 249 Score = 111 bits (278), Expect = 5e-25 Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 11/199 (5%) Query: 24 KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD 83 + L ++F + GE VG++G +G+GKSTLL++IAG+ P+SG+V GK Sbjct: 34 GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK--VA 91 Query: 84 PPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTT 143 P ++ F P LT EN+ L G+ ++E ++ I+ L F Sbjct: 92 PLIELGAGFD-----PELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVK 146 Query: 144 EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLM 203 S GM R+ F+ A V P +LL+DE + D + ++ E +++++ Sbjct: 147 TYSSGMYARLAFSVATHVEPDILLLDEVLAVGD----AAFQEKCLERLNELVEKNKTIVL 202 Query: 204 VTHNIEEAVLMCDRVLVFS 222 V+H++ CDR + Sbjct: 203 VSHDLGAIKQYCDRAIWLE 221 >gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 253 Score = 110 bits (277), Expect = 7e-25 Identities = 72/225 (32%), Positives = 110/225 (48%), Gaps = 34/225 (15%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS-----GQVLFKGKKIK 82 G+ L +N ++ ++ L+G SG GKSTLLR + + G+VL GK I Sbjct: 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIY 77 Query: 83 DPPKD-------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGL- 134 DP D + +VFQ FP +++ +NV GL+ GI +E + S++ L Sbjct: 78 DPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALW 136 Query: 135 -----DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA---ENLRTD 186 +SA +SGG QR+ ARA V P +LLMDEP SALD ++ E L T+ Sbjct: 137 DEVKDRLHKSALG--LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITE 194 Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 L + ++++VTHN+++A + D F G + E Sbjct: 195 LKKKY--------TIVIVTHNMQQAARVSDYTAFF--YLGELVEF 229 >gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]. Length = 242 Score = 108 bits (272), Expect = 2e-24 Identities = 68/221 (30%), Positives = 109/221 (49%), Gaps = 18/221 (8%) Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG---- 78 + G L + + GE + LLG SG+GKS+LLR++ L P SG + G Sbjct: 8 INCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFD 67 Query: 79 -------KKIKDPPKDISVVFQTFALFPWLTVLEN-VELGLKAKGIDKEERRKRALSAID 130 K I+D +++ +VFQ + L+P LTV EN +E + G+ K++ RA + Sbjct: 68 FSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLK 127 Query: 131 LIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190 + L + + +SGG QRV ARA ++ P +LL DEP +ALD + ++ + Sbjct: 128 RLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD----PEITAQIVSI 183 Query: 191 WIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 E + ++VTH +E A RV+ + G I E+ Sbjct: 184 IKELAETGITQVIVTHEVEVARKTASRVVYMEN--GHIVEQ 222 >gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 259 Score = 108 bits (270), Expect = 4e-24 Identities = 72/229 (31%), Positives = 115/229 (50%), Gaps = 26/229 (11%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD-PPKDIS- 89 +LD V+ ++ GE++ +LG +G+GKSTLL+ ++G +SP SG+V G + PP++++ Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75 Query: 90 ---VVFQTFAL-FPWLTVLENVELGLKA--KGIDKEERRKRALSAIDLIGLDGFESAHTT 143 V+ Q +L FP+ TV E V++G G + EE + A A+ L G Sbjct: 76 HRAVLPQNSSLAFPF-TVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYR 134 Query: 144 EISGGMLQRVGFARAF------VVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197 +SGG QRV AR V L +DEP SALD+ + L EG Sbjct: 135 TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREG--- 191 Query: 198 IESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSPE 246 ++L V H++ A DR+++ GR+ I+ P++ L+ E Sbjct: 192 -GAVLAVLHDLNLAAQYADRIVLLHQ--GRV-----IASGSPQDVLTDE 232 >gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 223 Score = 108 bits (270), Expect = 4e-24 Identities = 70/226 (30%), Positives = 114/226 (50%), Gaps = 20/226 (8%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 LLE++ + KI L+ ++ +V +GE + + G SG GKSTLL+I+A L+SP+ Sbjct: 3 LLELKQVGYLAGDAKI------LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT 56 Query: 71 SGQVLFKGKKIK--DPP---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA 125 SG +LF+G+ + P + +S QT ALF TV +N+ + + ++ R A Sbjct: 57 SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIR--NRRPDRAAA 113 Query: 126 LSAIDLIGLDG-FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184 L + L + + TE+SGG QR+ R P +LL+DE SALD N+ Sbjct: 114 LDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIE 173 Query: 185 TDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 + E + + L +TH+ ++A+ D+V+ PG E Sbjct: 174 EMIHRYVREQNVAV---LWITHDKDQAIRHADKVITLQ--PGHAGE 214 >gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]. Length = 567 Score = 107 bits (268), Expect = 6e-24 Identities = 69/214 (32%), Positives = 110/214 (51%), Gaps = 19/214 (8%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD 87 G VL ++F++ GE V ++G SGSGKSTL++++ L P+SG++L G I+D D Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLD 399 Query: 88 -----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-----GLDGF 137 I +V Q LF T+ EN+ LG ++ E + +A + I G D Sbjct: 400 SLRKRIGIVSQDPLLFSG-TIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTI 458 Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197 +SGG QR+ ARA + P +L++DE SALD T ++ D + ++GR Sbjct: 459 VGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQ-DALKKLLKGR-- 515 Query: 198 IESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 + L++ H + + DR++V + GRI E Sbjct: 516 --TTLIIAHRL-STIKNADRIIVL--DNGRIVER 544 >gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.. Length = 163 Score = 106 bits (266), Expect = 1e-23 Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 67/216 (31%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 LE++ I + F G + LD V+ +V GE+ LLG +G+GKSTL++I++GL P S Sbjct: 1 LELRGITKRF------GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS 54 Query: 72 GQVLFKGKKIK-DPPKD-----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA 125 G++L GK++ P+D I++V+Q Sbjct: 55 GEILVDGKEVSFASPRDARRAGIAMVYQ-------------------------------- 82 Query: 126 LSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRT 185 +S G Q V ARA LL++DEP +AL E L Sbjct: 83 -------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK 123 Query: 186 DLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221 + L +G +++ ++H ++E + DRV V Sbjct: 124 VIRRLRAQGV----AVIFISHRLDEVFEIADRVTVL 155 >gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 236 Score = 102 bits (256), Expect = 2e-22 Identities = 68/210 (32%), Positives = 108/210 (51%), Gaps = 19/210 (9%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87 VL V+F + +G+ V ++G SGSGKST+LR++ SSG +L G+ I++ D Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR 75 Query: 88 -ISVVFQTFALFPWLTVLENVELG-LKAKGIDKEERRKRALSAIDLIGL-DGFESA---H 141 I VV Q LF T+ N+ G A + E K A ++ DG+++ Sbjct: 76 AIGVVPQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGER 134 Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESM 201 ++SGG QRV ARA + P +LL+DE SALD T ++ L D+ +GR + Sbjct: 135 GLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDV-SKGR----TT 189 Query: 202 LMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 +++ H + ++ D+++V GRI E Sbjct: 190 IVIAHRLST-IVNADKIIVLKD--GRIVER 216 >gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.. Length = 238 Score = 102 bits (255), Expect = 3e-22 Identities = 60/213 (28%), Positives = 108/213 (50%), Gaps = 19/213 (8%) Query: 29 NLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP--- 85 ++ +L ++ + G+ V L+G SG GKST++ ++ P+SG++L G I+D Sbjct: 15 DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRW 74 Query: 86 --KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-GL-DGFES-- 139 I +V Q LF T+ EN+ G ++ E + + D I L DG+++ Sbjct: 75 LRSQIGLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLV 133 Query: 140 -AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198 +++SGG QR+ ARA + P +LL+DE SALD +E L + +D ++GR Sbjct: 134 GERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDA-ESEKLVQEALDRAMKGR--- 189 Query: 199 ESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 + +++ H + + D + V G++ E+ Sbjct: 190 -TTIVIAHRL-STIRNADLIAVLQ--NGQVVEQ 218 >gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains. Length = 119 Score = 101 bits (254), Expect = 3e-22 Identities = 53/124 (42%), Positives = 68/124 (54%), Gaps = 12/124 (9%) Query: 57 STLLRIIAGLVSPSSGQVLFKGKKIKDPP------KDISVVFQTFALFPWLTVLENVELG 110 STLL++I GL+ P+SG +L G+ D K I VVFQ LFP LTV EN+ G Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQDPQLFPELTVRENLFFG 60 Query: 111 LKAKGIDKEERRKRALSAIDLIGLDGFESAH-TTEISGGMLQRVGFARAFVVFPSLLLMD 169 L+ K E RA A++ +GL F +SGG QRV ARA + P LLL+D Sbjct: 61 LRDK-----EADARAEEALERVGLPDFLDRSPVGTLSGGQKQRVAIARALLKKPKLLLLD 115 Query: 170 EPFS 173 EP + Sbjct: 116 EPTA 119 >gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]. Length = 613 Score = 100 bits (250), Expect = 9e-22 Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 18/206 (8%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS---SGQVLFKGK--KIKDPPK 86 +L V+ GE++ ++G SGSGK+TLL +AG ++ SG++L G+ + K Sbjct: 45 ILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRK 104 Query: 87 DISVVFQTFALFPWLTVLEN----VELGLKAKGIDKEERRKRALSAIDLIGLDG-----F 137 V Q L P LTV E L L + KEE+R+R I +GL+ Sbjct: 105 ISGYVQQDDVLLPTLTVRETLRFSALLRLP-SSLSKEEKRERVEEVISELGLEKCADTLI 163 Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197 + +SGG +RV A + PS+L +DEP S LD +A + L L GR Sbjct: 164 GNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTV 223 Query: 198 IESMLMVTHNIEEAVLMCDRVLVFSS 223 I ++ + + E + D++L+ S Sbjct: 224 ICTIHQPSSELFE---LFDKLLLLSE 246 >gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]. Length = 573 Score = 100 bits (250), Expect = 1e-21 Identities = 70/237 (29%), Positives = 114/237 (48%), Gaps = 29/237 (12%) Query: 8 DNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67 + LE++++ ++ ++ L N ++ GE V +LGRSGSGKSTLL+++AG Sbjct: 333 TGQALELRNVSFTYPGQQT----KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW 388 Query: 68 SPSSGQVLFKGKKI-----KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR 122 P G + G +I + + ISV+ Q LF T+ +N+ L A +E Sbjct: 389 DPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFS-GTLRDNLRL---ANPDASDEEL 444 Query: 123 KRALSAIDL--------IGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSA 174 AL + L GL+ + +SGG +R+ ARA + L L+DEP Sbjct: 445 WAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEG 504 Query: 175 LDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 LD +T ++ L + +++LMVTH + M DR++V + G+I EE Sbjct: 505 LDPITER----QVLAL-LFEHAEGKTLLMVTHRLRGLERM-DRIIVL--DNGKIIEE 553 >gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]. Length = 559 Score = 100 bits (250), Expect = 1e-21 Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 24/211 (11%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD-----PPK 86 L +N + +G++ L+G SG+GKSTLL ++ G ++P+ G++ G ++D K Sbjct: 336 ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK 395 Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDL-------IGLDGFES 139 IS V Q LF T+ EN+ L + +E AL L GLD Sbjct: 396 QISWVSQNPYLFAG-TIRENILLA---RPDASDEEIIAALDQAGLLEFVPKPDGLDTVIG 451 Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199 +SGG QR+ ARA + SLLL+DEP + LD T + + L +L + + Sbjct: 452 EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL-AKQKT--- 507 Query: 200 SMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 +L++TH +E+A DR++V + GR+ E Sbjct: 508 -VLVITHRLEDAADA-DRIVVL--DNGRLVE 534 >gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.. Length = 237 Score = 99.2 bits (247), Expect = 2e-21 Identities = 64/211 (30%), Positives = 106/211 (50%), Gaps = 19/211 (9%) Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK--DPP--- 85 ++LD ++ + GE+VG++GRSGSGKSTL ++I P +G+VL G + DP Sbjct: 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLR 75 Query: 86 KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-----GLDGFESA 140 + + VV Q LF ++ +N+ L +++ + A D I G D Sbjct: 76 RQVGVVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGE 134 Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200 +SGG QR+ ARA + P +L+ DE SALD + + ++ D+ GR + Sbjct: 135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI-CAGR----T 189 Query: 201 MLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 ++++ H + V DR++V GRI E+ Sbjct: 190 VIIIAHRL-STVKNADRIIVMEK--GRIVEQ 217 >gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]. Length = 716 Score = 99.3 bits (247), Expect = 2e-21 Identities = 66/229 (28%), Positives = 118/229 (51%), Gaps = 22/229 (9%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 +E +D+ ++ + ++ VL ++F + GE+V L+G SGSGKST+ ++ P+S Sbjct: 466 IEFEDVSFAYPTRP---DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTS 522 Query: 72 GQVLFKGKKIKDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRAL 126 G++L G I D + I +V Q LF ++ EN+ GL ++ E + Sbjct: 523 GRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLDNATDEEIEAAAKMA 581 Query: 127 SAIDLI-----GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAE 181 +A + I G + +++SGG QR+ ARA + P +L++DE SALD +E Sbjct: 582 NAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDA-ESE 640 Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 L + +D ++GR ++L++ H + V D+++V GR+ E Sbjct: 641 YLVQEALDRLMQGR----TVLVIAHRL-STVRHADQIVVIDK--GRVVE 682 >gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 234 Score = 96.8 bits (241), Expect = 9e-21 Identities = 67/213 (31%), Positives = 104/213 (48%), Gaps = 25/213 (11%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP-----K 86 VL ++ ++ +GE V L+G SGSGKSTL+ +I SG++L G ++D + Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76 Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-----GLDGFESAH 141 I +V Q LF TV EN+ G ++ E RA +A + I G D Sbjct: 77 QIGLVSQDVFLFND-TVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGER 135 Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESM 201 ++SGG QR+ ARA + P +L++DE SALD + E L ++ ++ R + Sbjct: 136 GVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES-ERLVQAALERLMKNR----TT 190 Query: 202 LMVTH---NIEEAVLMCDRVLVFSSNPGRIAEE 231 ++ H IE A DR++V G+I E Sbjct: 191 FVIAHRLSTIENA----DRIVVLED--GKIVER 217 >gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.. Length = 236 Score = 96.8 bits (241), Expect = 1e-20 Identities = 61/202 (30%), Positives = 100/202 (49%), Gaps = 10/202 (4%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG----KKIKDPPKD 87 L ++F + GEIVG +G +G+GK+T L+I++GL+ P+SG+V G K+ K + Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRR 95 Query: 88 ISVVFQTFALFPW-LTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEIS 146 I VVF W L V+++ L + +KR +L+ L+ ++S Sbjct: 96 IGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLS 155 Query: 147 GGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTH 206 G R A A + P +L +DEP LDV+ EN+R L + E + L+ +H Sbjct: 156 LGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTV---LLTSH 212 Query: 207 NIEEAVLMCDRVLVFSSNPGRI 228 +++ + RVLV GR+ Sbjct: 213 YMKDIEALARRVLVIDK--GRL 232 >gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.. Length = 204 Score = 95.5 bits (238), Expect = 3e-20 Identities = 61/221 (27%), Positives = 100/221 (45%), Gaps = 34/221 (15%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 + ++D ++ + + L +N V GE+V ++G GSGKS+LL + G + S Sbjct: 1 ISVEDASFTWDSGEQETSF-TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS 59 Query: 72 GQVLFKGKKIKDPPKDISVVFQTFALFPWL---TVLENVELGLKAKGIDKEERRKRALSA 128 G V G I+ V Q PW+ T+ EN+ G D EER ++ + A Sbjct: 60 GSVSVPGS--------IAYVSQE----PWIQNGTIRENILFGKP---FD-EERYEKVIKA 103 Query: 129 IDLI-GLDGFESAHTTEI-------SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180 L L+ TEI SGG QR+ ARA + L+D+P SA+D Sbjct: 104 CALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVG 163 Query: 181 ENLRTDLI-DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220 ++ + I L + + I +VTH + + + D+++V Sbjct: 164 RHIFENCILGLLLNNKTRI----LVTHQL-QLLPHADQIVV 199 >gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]. Length = 530 Score = 94.9 bits (236), Expect = 3e-20 Identities = 58/230 (25%), Positives = 101/230 (43%), Gaps = 50/230 (21%) Query: 10 RLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP 69 ++ ++++ ++ + + L+ V+ ++ GE +GL+GR+G+GKSTLL+I+AG + P Sbjct: 2 SMITLENLSLAYGDRPL------LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP 55 Query: 70 SSGQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAK--------------- 114 SG+V + + + Q L P TVL+ V G Sbjct: 56 DSGEV------TRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109 Query: 115 ---------------GIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAF 159 +D RA A+ +G E + +SGG +RV ARA Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD-EDRPVSSLSGGWRRRVALARAL 168 Query: 160 VVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIE 209 + P LLL+DEP + LD+ + E L L ++++V+H+ Sbjct: 169 LEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-------GTVIVVSHDRY 211 Score = 83.0 bits (205), Expect = 1e-16 Identities = 62/214 (28%), Positives = 106/214 (49%), Gaps = 24/214 (11%) Query: 9 NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68 +LE +++ + + G L+L ++F + G+ + ++G +G+GKSTLL+++AG + Sbjct: 319 KLVLEFENVSKGYD-----GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG 373 Query: 69 PSSGQVLFKGKKIKDPPKDISVVFQTFA-LFPWLTVLENVELGLKAKGIDKEERRKRALS 127 P SG V G+ +K I Q L P TVLE + G D++E R L Sbjct: 374 PLSGTVKV-GETVK-----IGYFDQHRDELDPDKTVLEELSEG--FPDGDEQEVR-AYLG 424 Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187 G D + +SGG R+ A+ + P+LLL+DEP + LD+ + E L L Sbjct: 425 RFGFTGEDQEKPVGV--LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL 482 Query: 188 IDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221 +D EG ++L+V+H+ + R+ + Sbjct: 483 LDF--EG-----TVLLVSHDRYFLDRVATRIWLV 509 >gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]. Length = 209 Score = 94.2 bits (234), Expect = 6e-20 Identities = 46/154 (29%), Positives = 82/154 (53%), Gaps = 7/154 (4%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPK- 86 G + ++F +++GE + + G +G+GK+TLLRI+AGL+ P +G+V ++G+ I++ + Sbjct: 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRES 72 Query: 87 ---DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTT 143 + + + LT LEN+ + G A+ +GL G E Sbjct: 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAA---TIWEALAQVGLAGLEDLPVG 129 Query: 144 EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177 ++S G +RV AR ++ L ++DEPF+ALD Sbjct: 130 QLSAGQQRRVALARLWLSPAPLWILDEPFTALDK 163 >gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]. Length = 257 Score = 94.2 bits (234), Expect = 6e-20 Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 19/212 (8%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF------KGKKIKDPP 85 +L +++ V+ GE ++G +G+GK+TLL ++ G PSSG V KG+ I + Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105 Query: 86 KDISVV--FQTFALFPWLTVLENV------ELGLKAKGIDKEERRKRALSAIDLIGLDGF 137 K I +V TV + V +G+ + + E A ++L+G Sbjct: 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLT-AEDLAAAQWLLELLGAKHL 164 Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197 +S G +RV ARA V P LL++DEP LD++ E L L + + Sbjct: 165 ADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEE--LAASPG 222 Query: 198 IESMLMVTHNIEEAVLMCDRVLVFSSNPGRIA 229 ++L VTH+ EE L+ G + Sbjct: 223 APALLFVTHHAEEIPPCFTHRLLLK--EGEVV 252 >gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 235 Score = 94.2 bits (234), Expect = 6e-20 Identities = 73/235 (31%), Positives = 121/235 (51%), Gaps = 20/235 (8%) Query: 11 LLEIQDICQSFSLKKISG-NLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP 69 L + ++ ++F+L + G L VL V+ +V++GE V L G SGSGKSTLLR + P Sbjct: 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP 63 Query: 70 SSGQVLFKGKK-----IKDPPKD--------ISVVFQTFALFPWLTVLENVELGLKAKGI 116 GQ+L + + + P++ I V Q + P ++ L+ V L A+G+ Sbjct: 64 DEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGV 123 Query: 117 DKEERRKRALSAIDLIGL-DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175 +E R +A + + L + S SGG QRV AR F+V +LL+DEP ++L Sbjct: 124 PREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL 183 Query: 176 DVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSS-NPGRIA 229 D A N R +++L E + +++ + H+ E + DR+L S+ +P + A Sbjct: 184 D---ATN-RAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSAFSPRKEA 234 >gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 229 Score = 94.1 bits (234), Expect = 7e-20 Identities = 61/210 (29%), Positives = 104/210 (49%), Gaps = 19/210 (9%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87 VL +NF++ GE V ++G +G+GK+TL+ ++ P GQ+L G I+D + Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRS 77 Query: 88 -ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-----GLDGFESAH 141 I VV Q LF T++EN+ LG ++ + A D I G D + Sbjct: 78 MIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGEN 136 Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESM 201 +S G Q + ARA + P +L++DE S +D T + ++ L L ++GR + Sbjct: 137 GGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL-MKGR----TS 191 Query: 202 LMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 +++ H + + D++LV + G+I EE Sbjct: 192 IIIAHRL-STIKNADKILVL--DDGKIIEE 218 >gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.. Length = 194 Score = 94.1 bits (234), Expect = 7e-20 Identities = 62/223 (27%), Positives = 93/223 (41%), Gaps = 40/223 (17%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS- 70 L +++ + +L V+ GE+ ++G SG+GKSTLL +AG + Sbjct: 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63 Query: 71 -SGQVLFKGKKIKD--PPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALS 127 SG+VL G+ + K I V Q L P LTV E + K +G Sbjct: 64 VSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRG------------ 111 Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187 +SGG +RV A V PSLL +DEP S LD +A + + L Sbjct: 112 -----------------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLL 154 Query: 188 IDLWIEGRLPIESMLMVTHNI-EEAVLMCDRVLVFSSNPGRIA 229 L GR +++ H E + D++L+ S GR+ Sbjct: 155 RRLADTGR----TIICSIHQPSSEIFELFDKLLLLS--QGRVI 191 >gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.. Length = 226 Score = 92.2 bits (229), Expect = 3e-19 Identities = 66/202 (32%), Positives = 98/202 (48%), Gaps = 11/202 (5%) Query: 9 NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV- 67 R+L D+ K + +L+ V+ +V SG+++ +LG SGSGK+TLL I+G V Sbjct: 1 QRVLPWWDVGLKA--KNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVE 58 Query: 68 --SPSSGQVLFKGKKIKDP--PKDISVVFQTFALFPWLTVLEN----VELGLKAKGIDKE 119 +SGQ+LF G+ K K ++ V Q L P LTV E L L K D Sbjct: 59 GGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAI 118 Query: 120 ERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179 +++ + + L ISGG +RV A + P +L++DEP S LD T Sbjct: 119 RKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFT 178 Query: 180 AENLRTDLIDLWIEGRLPIESM 201 A NL + L L R+ I ++ Sbjct: 179 ALNLVSTLSQLARRNRIVILTI 200 >gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 263 Score = 91.9 bits (228), Expect = 3e-19 Identities = 68/217 (31%), Positives = 110/217 (50%), Gaps = 20/217 (9%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87 L+ ++ ++ G+ V ++G +G+GKSTLL IAG + P+SGQ+L G + Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 Query: 88 -ISVVFQ--TFALFPWLTVLENVELGL---KAKGIDKEERRKRALSAIDLI-GLD-GFES 139 ++ VFQ P LT+ EN+ L K +G+ +R S + + L G E+ Sbjct: 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLEN 140 Query: 140 AHTTEI---SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL 196 + I SGG Q + A + P +LL+DE +ALD TAE + + E +L Sbjct: 141 RLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL 200 Query: 197 PIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVL 233 LMVTHN+E+A+ +R+++ S G+I +V Sbjct: 201 TT---LMVTHNMEDALDYGNRLIMLHS--GKIVLDVT 232 >gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.. Length = 221 Score = 91.3 bits (227), Expect = 5e-19 Identities = 66/225 (29%), Positives = 103/225 (45%), Gaps = 26/225 (11%) Query: 19 QSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG 78 ++ SL+ VL ++F++ GE VG++GR+GSGKS+LL + LV SSG +L G Sbjct: 6 KNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDG 65 Query: 79 KKIKD-PPKD----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI- 132 I D IS++ Q LF T+ N L G +E +AL + L Sbjct: 66 VDISKIGLHDLRSRISIIPQDPVLFSG-TIRSN----LDPFGEYSDEELWQALERVGLKE 120 Query: 133 -------GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRT 185 GLD +S G Q + ARA + +L++DE +++D T Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA---- 176 Query: 186 DLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 LI I ++L + H + + ++ DR+LV GR+ E Sbjct: 177 -LIQKTIREAFKDCTVLTIAHRL-DTIIDSDRILVLDK--GRVVE 217 >gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]. Length = 591 Score = 91.1 bits (226), Expect = 5e-19 Identities = 64/210 (30%), Positives = 109/210 (51%), Gaps = 20/210 (9%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87 VL V+F + GE V ++G +GSGKST+LR++ SG +L G+ IK+ + Sbjct: 367 VLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQ 425 Query: 88 -ISVVFQTFALFPWLTVLENVELGLKAKGIDK--EERRKRALSAIDLIGLDGFESA---H 141 I VV Q LF T+L N++ G + ++ E ++ L + DG+++ Sbjct: 426 SIGVVPQDSVLFN-DTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGER 484 Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESM 201 +SGG QRV ARAF+ +LL+DE SALD T + ++D+ + GR ++ Sbjct: 485 GLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGR----TV 539 Query: 202 LMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 +M+ H + + + D+++V + G + E Sbjct: 540 IMIVHRL-DLLKDFDKIIVLDN--GTVKEY 566 >gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.. Length = 182 Score = 90.9 bits (226), Expect = 7e-19 Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 38/212 (17%) Query: 21 FSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKK 80 ++ +S V D V+F V +GEIVG+ G G+G++ L + GL P+SG++ GK Sbjct: 5 LEVRGLSVKGAVRD-VSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKP 63 Query: 81 IKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRAL----SAIDLIGLDG 136 + + + + G+ E+R++ L S + I L Sbjct: 64 VT-----------------RRSPRDAIRAGI---AYVPEDRKREGLVLDLSVAENIAL-- 101 Query: 137 FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL 196 ++ +SGG Q+V AR P +L++DEP +DV + + +L G+ Sbjct: 102 -----SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGK- 155 Query: 197 PIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228 ++L+++ ++E + +CDR+LV GRI Sbjct: 156 ---AVLLISSELDELLGLCDRILVMYE--GRI 182 >gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.. Length = 173 Score = 88.7 bits (220), Expect = 3e-18 Identities = 58/208 (27%), Positives = 89/208 (42%), Gaps = 48/208 (23%) Query: 18 CQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFK 77 ++ S + VL V+F++ GE + ++G SGSGKSTL R+I GL+ P+SG+V Sbjct: 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLD 62 Query: 78 GKKIKDPPKD-----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI 132 G I + + + Q LF ++ EN+ Sbjct: 63 GADISQWDPNELGDHVGYLPQDDELFSG-SIAENI------------------------- 96 Query: 133 GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWI 192 +SGG QR+G ARA P +L++DEP S LDV L + L Sbjct: 97 ------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA 144 Query: 193 EGRLPIESMLMVTHNIEEAVLMCDRVLV 220 G + +++ H E + DR+LV Sbjct: 145 AG----ATRIVIAHRP-ETLASADRILV 167 >gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 267 Score = 88.5 bits (219), Expect = 3e-18 Identities = 61/224 (27%), Positives = 123/224 (54%), Gaps = 19/224 (8%) Query: 11 LLEIQDICQSFSLKKI---SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67 LLE++++ ++F + + + V+F + G+ + ++G +GSGKSTL +++AG++ Sbjct: 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63 Query: 68 SPSSGQVLFKGKKI-----KDPPKDISVVFQ--TFALFPWLTVLENVELGLK-AKGIDKE 119 P+SG++L + K I ++FQ +L P L + + ++ L+ ++ E Sbjct: 64 EPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPE 123 Query: 120 ERRKRALSAIDLIGL-DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVL 178 +RRK+ + ++GL + + ++ G QRV ARA ++ P +++ DE ++LD+ Sbjct: 124 QRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDM- 182 Query: 179 TAENLRTDLIDLWIE--GRLPIESMLMVTHNIEEAVLMCDRVLV 220 ++R+ LI+L +E + I S + VT +I + D+VLV Sbjct: 183 ---SMRSQLINLMLELQEKQGI-SYIYVTQHIGMIKHISDQVLV 222 >gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]. Length = 580 Score = 87.6 bits (217), Expect = 6e-18 Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 37/243 (15%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87 +L ++F + +GE +G++G SGSGKSTL R++ G+ P+SG V G ++ ++ Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410 Query: 88 -ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRK-----RALSAIDLIGLDGFESAH 141 I + Q LF T+ EN+ A+ ++ + K R +LI + Sbjct: 411 HIGYLPQDVELFDG-TIAENI-----ARFGEEADPEKVIEAARLAGVHELIL--RLPQGY 462 Query: 142 TTEI-------SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194 T I SGG QR+ ARA P L+++DEP S LD L ++ G Sbjct: 463 DTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARG 522 Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIA-----EEVLISIPHPRNRLSPEFRQ 249 +++++ H A+ D++LV GRIA EEVL + P R + Sbjct: 523 G----TVVVIAHRP-SALASVDKILVLQD--GRIAAFGPREEVLAKVLRPPPRQAKPGTV 575 Query: 250 IVE 252 + Sbjct: 576 VAP 578 >gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 325 Score = 86.9 bits (215), Expect = 1e-17 Identities = 60/198 (30%), Positives = 102/198 (51%), Gaps = 10/198 (5%) Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGK----KIKDPPKDISVV 91 ++F + GEIVG LG +G+GKST L+++ GL+ P+SG+V GK + ++ + I +V Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102 Query: 92 FQTFALFPW-LTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGML 150 W L L+++E+ I +E +R +++ L+GF ++S G Sbjct: 103 MGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQR 162 Query: 151 QRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEE 210 R A A + P +L +DEP LDV N+R L + E + + L+ TH ++ Sbjct: 163 MRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATV---LLTTHIFDD 219 Query: 211 AVLMCDRVLVFSSNPGRI 228 +CDRVL+ G++ Sbjct: 220 IATLCDRVLLIDQ--GQL 235 >gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.. Length = 226 Score = 84.2 bits (208), Expect = 6e-17 Identities = 68/210 (32%), Positives = 104/210 (49%), Gaps = 23/210 (10%) Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP----- 85 LVL V+F + GE+ L+G SGSGKST++ ++ P GQVL GK I Sbjct: 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 Query: 86 KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTE- 144 +S+V Q LF ++ +N+ GL++ + + + A I S + TE Sbjct: 88 SKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFI--SELASGYDTEV 144 Query: 145 ------ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198 +SGG QRV ARA + P +L++DE SALD + + ++ L D W E R Sbjct: 145 GEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD-WPERR--- 200 Query: 199 ESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228 ++L++ H + V D++LV GRI Sbjct: 201 -TVLVIAHRL-STVERADQILVLDG--GRI 226 >gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 258 Score = 84.2 bits (208), Expect = 6e-17 Identities = 77/265 (29%), Positives = 121/265 (45%), Gaps = 46/265 (17%) Query: 8 DNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67 D LL + + + + G V+F++ GE++G++G SGSGK+TLL+ I+G + Sbjct: 3 DKPLLSVSGLSKLY------GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRL 56 Query: 68 SPSSGQVLFKGKKIKDPPKDISVVFQ----TFALFPWLTVLENVELGLK---AKGIDKEE 120 +P +G V ++ + P+D+ + + W V +N GL+ + G + E Sbjct: 57 TPDAGTVTYRMRD--GQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGE 114 Query: 121 R----------RKRALSA-------IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFP 163 R RA + IDL +D SGGM QR+ AR V P Sbjct: 115 RLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRT----FSGGMQQRLQIARNLVTRP 170 Query: 164 SLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSS 223 L+ MDEP LDV L L L E L ++++VTH++ A L+ DR++V Sbjct: 171 RLVFMDEPTGGLDVSVQARLLDLLRGLVRELGL---AVVIVTHDLAVARLLADRLMVMKQ 227 Query: 224 NPGRIAE-----EVLISIPHPRNRL 243 G++ E VL HP +L Sbjct: 228 --GQVVESGLTDRVLDDPHHPYTQL 250 >gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component [Posttranslational modification, protein turnover, chaperones]. Length = 251 Score = 83.7 bits (207), Expect = 1e-16 Identities = 67/251 (26%), Positives = 111/251 (44%), Gaps = 47/251 (18%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VS 68 +LEI+D+ + G +L VN V GE+ ++G +GSGKSTL I G Sbjct: 3 MLEIKDLHVE-----VEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE 57 Query: 69 PSSGQVLFKGKKIKDPPKD------ISVVFQTFALFPWLTVLENVELGLKAKGIDKE--- 119 + G++LF G+ I + D I + FQ P +T + + + A+ + Sbjct: 58 VTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILP 117 Query: 120 ERRKRALSAIDLIGLD----------GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMD 169 E K +L+GLD GF SGG +R + ++ P L ++D Sbjct: 118 EFIKELKEKAELLGLDEEFLERYVNEGF--------SGGEKKRNEILQLLLLEPKLAILD 169 Query: 170 EPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHN--------IEEAVLMCDRVLVF 221 EP S LD+ + + + L EGR +L++TH ++ ++ D +V Sbjct: 170 EPDSGLDIDALKIVAEGINALREEGR----GVLIITHYQRLLDYIKPDKVHVLYDGRIVK 225 Query: 222 SSNPGRIAEEV 232 S +P +AEE+ Sbjct: 226 SGDP-ELAEEL 235 >gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 252 Score = 82.9 bits (205), Expect = 2e-16 Identities = 57/218 (26%), Positives = 108/218 (49%), Gaps = 16/218 (7%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 ++ I+++ +S+ G +VLD V+ ++ G I ++G +G+GKSTLL +++ L+ Sbjct: 1 MITIENVSKSY------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD 54 Query: 71 SGQVLFKGKKIKDPP-----KDISVVFQTFALFPWLTVLENVELGL--KAKGIDKEERRK 123 SG++ G ++ P K +S++ Q + LTV + V G ++G +E R+ Sbjct: 55 SGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRR 114 Query: 124 RALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL 183 AI+ + L+ + E+SGG QR A +L+DEP + LD+ + + Sbjct: 115 IINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQI 174 Query: 184 RTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221 L L E +++++V H+I A D ++ Sbjct: 175 MKILRRLADELG---KTIVVVLHDINFASCYSDHIVAL 209 >gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.. Length = 201 Score = 82.7 bits (204), Expect = 2e-16 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 10/164 (6%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD 87 + ++F +++GE + + G +GSGK+TLLRI+AGL P +G+VL G + Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDS 70 Query: 88 ISVVFQTFALFP----WLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTT 143 I+ P L+VLEN+ ++ A+ +GL+GFE Sbjct: 71 IARGLLYLGHAPGIKTTLSVLENLRFWHADHS------DEQVEEALARVGLNGFEDRPVA 124 Query: 144 EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187 ++S G +RV AR + L ++DEP +ALD + Sbjct: 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168 >gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]. Length = 790 Score = 82.8 bits (204), Expect = 2e-16 Identities = 65/211 (30%), Positives = 99/211 (46%), Gaps = 23/211 (10%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP-----K 86 VL ++F V G+ V L+G SG+GKST++R++ +SG + G+ I++ Sbjct: 553 VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRS 612 Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEI- 145 I VV Q LF T+L N+ + ++ +A D I F + T + Sbjct: 613 SIGVVPQDTVLFN-DTILYNIRYAKPSASNEEVYAAAKAAQIHDRI--LQFPEGYNTRVG 669 Query: 146 ------SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199 SGG QRV AR + PS++L+DE SALD T ++ L L R I Sbjct: 670 ERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARL-CANRTTI- 727 Query: 200 SMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 +V H + ++ D +LV S+ GRI E Sbjct: 728 ---VVAHRL-STIVNADLILVISN--GRIVE 752 >gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1381 Score = 80.3 bits (198), Expect = 1e-15 Identities = 62/211 (29%), Positives = 97/211 (45%), Gaps = 34/211 (16%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVV 91 L +NF + G++V ++G GSGKS+LL I G + SG V G ++ V Sbjct: 536 TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS--------VAYV 587 Query: 92 FQTFALFPWL---TVLENVELGLKAKGIDKEERRKRALSAIDLI-GLDGFESAHTTEI-- 145 Q PW+ TV EN+ G EER + + A L L+ TEI Sbjct: 588 PQQ----PWIQNGTVRENILFGSPY----DEERYDKVIKACALKKDLEILPFGDLTEIGE 639 Query: 146 -----SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200 SGG QR+ ARA + L+D+P SA+D + + + I G L ++ Sbjct: 640 RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGK----HIFEECIRGLLRGKT 695 Query: 201 MLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 +++VTH + + + D+++V G+I E Sbjct: 696 VILVTHQL-QFLPHADQIIVLKD--GKIVES 723 Score = 74.9 bits (184), Expect = 4e-14 Identities = 66/226 (29%), Positives = 101/226 (44%), Gaps = 28/226 (12%) Query: 19 QSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG 78 + SL+ LVL ++F + GE VG++GR+G+GKS+L+ + LV P+ G++L G Sbjct: 1142 EDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDG 1201 Query: 79 KKI-----KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI- 132 I D +S++ Q LF TV N L ++ AL L Sbjct: 1202 VDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFN----LDPFDEYSDDEIWEALERCQLKD 1256 Query: 133 -------GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRT 185 GLD S S G Q + ARA + +L++DE +++D T Sbjct: 1257 VVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDP------ET 1310 Query: 186 D-LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 D LI I ++L + H + V+ DRVLV + GR+ E Sbjct: 1311 DALIQKTIREEFKDCTVLTIAHRL-NTVMDSDRVLVLDA--GRVVE 1353 >gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]. Length = 249 Score = 79.9 bits (197), Expect = 1e-15 Identities = 65/227 (28%), Positives = 101/227 (44%), Gaps = 26/227 (11%) Query: 9 NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68 +L + + SF G L+ ++F+V GE+ L+G +G+GK+TL+ +I G Sbjct: 3 PIILYLDGVSVSF------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR 56 Query: 69 PSSGQVLFKGKK--IKDPPKDISVV-----FQTFALFPWLTVLENVELGLKAK------- 114 P G+VLF G K P I+ FQ +F LTV EN+EL L Sbjct: 57 PQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASL 116 Query: 115 -GIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFS 173 + E R+R + IGL +S G Q + P LLL+DEP + Sbjct: 117 FARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVA 176 Query: 174 ALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220 + AE +T + + G+ S+L+V H++ + D+V V Sbjct: 177 GMT--DAETEKTAELLKSLAGK---HSILVVEHDMGFVREIADKVTV 218 >gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]. Length = 497 Score = 78.8 bits (194), Expect = 3e-15 Identities = 60/236 (25%), Positives = 111/236 (47%), Gaps = 22/236 (9%) Query: 6 IKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAG 65 + RL + I SF+ +L+ ++F + G+ V ++G SG+GKST+LR++ Sbjct: 255 LWPVRLGAVAFINVSFAY---DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFR 311 Query: 66 LVSPSSGQVLFKGKKIKDPPKD-----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEE 120 +SG + G+ I+D + I +V Q LF T+ N++ G ++ Sbjct: 312 FYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFN-DTIAYNIKYGRPDATAEEVG 370 Query: 121 R--RKRALSAIDLIGLDGFESA---HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175 + +G+++ ++SGG QRV AR + P +L++DE SAL Sbjct: 371 AAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSAL 430 Query: 176 DVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 D T + ++ L ++ GR + L++ H + ++ D ++V + GRI E Sbjct: 431 DTHTEQAIQAALREV-SAGR----TTLVIAHRL-STIIDADEIIVLDN--GRIVER 478 >gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 246 Score = 76.9 bits (189), Expect = 1e-14 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 14/188 (7%) Query: 39 NVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALF 98 ++S E++G+LG +G GK+T ++++AG++ P G + + + P+ I ++ Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEG---- 76 Query: 99 PWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARA 158 V L + D + ++ E+SGG LQRV A Sbjct: 77 -------TVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAAC 129 Query: 159 FVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRV 218 + L+DEP + LDV + + +I + E ++ +V H+I + DR+ Sbjct: 130 LSKDADIYLLDEPSAYLDV-EQRLMASKVIRRFAENNE--KTAFVVEHDIIMIDYLADRL 186 Query: 219 LVFSSNPG 226 +VF P Sbjct: 187 IVFEGEPS 194 >gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1391 Score = 75.3 bits (185), Expect = 4e-14 Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 28/195 (14%) Query: 9 NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68 N L + K+ + +L ++ + GE+ +LG GSGK+TLL+ +AG + Sbjct: 107 NILSNPLESILRMLGKRKKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLD 166 Query: 69 P---SSGQVLFKGKKIKD--PPKDISVVFQTFALFPWLTVLENVELGLKAKG----IDKE 119 SSG++ + G +K+ P K ++ + FP LTV E ++ + KG D+ Sbjct: 167 NFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEV 226 Query: 120 ERRKRALSAIDLI----GLDGFESAHTTE----------ISGGMLQRVGFARAFVVFPSL 165 RR++ + D + GLD H + +SGG +RV V S+ Sbjct: 227 SRREKLAAMTDYLLKILGLD-----HCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASI 281 Query: 166 LLMDEPFSALDVLTA 180 L DE LD TA Sbjct: 282 LFWDEITRGLDSSTA 296 Score = 69.5 bits (170), Expect = 2e-12 Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 14/189 (7%) Query: 4 IAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRII 63 +++ + D+ + + G +L+ V+ G + L+G SG+GK+TLL ++ Sbjct: 780 LSLTFKDVFYWVDLP--YEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVL 837 Query: 64 AGLVSPS--SGQVLFKGKKIKDP--PKDISVVFQTFALFPWLTVLENVELGL---KAKGI 116 AG + G +L G + V Q P LTV E++ K + Sbjct: 838 AGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEV 897 Query: 117 DKEERRKRALSAIDLIGLDGFESA----HTTEISGGMLQRVGFARAFVVFP-SLLLMDEP 171 EE+ + I+L+ L + A + +S +R+ V P S+L +DEP Sbjct: 898 SDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEP 957 Query: 172 FSALDVLTA 180 S LD A Sbjct: 958 TSGLDSQAA 966 >gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.. Length = 178 Score = 74.9 bits (184), Expect = 4e-14 Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 47/205 (22%) Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD--- 87 VL ++ + GE + LLGRSGSGKSTLL+++ G + P G++ G + D K Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSS 75 Query: 88 -ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEIS 146 ISV+ Q LF T+ N+ S Sbjct: 76 LISVLNQRPYLFD-TTLRNNL----------------------------------GRRFS 100 Query: 147 GGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTH 206 GG QR+ AR + ++L+DEP LD +T L + + ++ L ++++ +TH Sbjct: 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV-----LKDKTLIWITH 155 Query: 207 NIEEAVLMCDRVLVFSSNPGRIAEE 231 ++ + D++L + G+I + Sbjct: 156 HL-TGIEHMDKILFLEN--GKIIMQ 177 >gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]. Length = 591 Score = 72.5 bits (178), Expect = 2e-13 Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 16/188 (8%) Query: 40 VSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALFP 99 + GE++G+LG +G GK+T ++++AG++ P G + K+ P+ IS + Sbjct: 364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE--EDLKVSYKPQYISPDYD------ 415 Query: 100 WLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAF 159 VE L++ + + L+ E+SGG LQRV A A Sbjct: 416 -----GTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAAL 470 Query: 160 VVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVL 219 L L+DEP + LDV + +I +IE ++ L+V H+I + DR++ Sbjct: 471 SREADLYLLDEPSAYLDV-EQRIIVAKVIRRFIENNE--KTALVVDHDIYMIDYVSDRLI 527 Query: 220 VFSSNPGR 227 VF PG+ Sbjct: 528 VFEGEPGK 535 Score = 59.1 bits (143), Expect = 3e-09 Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 34/208 (16%) Query: 40 VSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQV-----------LFKG-------KKI 81 G++VG+LG +G GKST L+I+AG + P+ G+ F+G KK+ Sbjct: 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKL 156 Query: 82 KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAH 141 + Q L P + + EL + K + R + ++ +GL+ Sbjct: 157 YEGELRAVHKPQYVDLIPKVVKGKVGEL------LKKVDERGKFDEVVERLGLENVLDRD 210 Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV---LTAENLRTDLIDLWIEGRLPI 198 +E+SGG LQRV A A + + DEP S LD+ L A + +L + Sbjct: 211 VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAE-------DG 263 Query: 199 ESMLMVTHNIEEAVLMCDRVLVFSSNPG 226 + +++V H++ + D V + PG Sbjct: 264 KYVIVVEHDLAVLDYLSDFVHILYGEPG 291 >gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 202 Score = 71.8 bits (176), Expect = 3e-13 Identities = 50/168 (29%), Positives = 70/168 (41%), Gaps = 30/168 (17%) Query: 20 SFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS---SGQVLF 76 SF+ K + +L + V GE+V +LGR GSG STLL+ +A + G + + Sbjct: 10 SFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHY 69 Query: 77 KGKKIKD----PPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI 132 G K+ P +I V + FP LTV E ++ L+ KG Sbjct: 70 NGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG----------------- 112 Query: 133 GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180 + ISGG +RV A A V S+L D LD TA Sbjct: 113 ------NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTA 154 >gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.. Length = 200 Score = 70.5 bits (173), Expect = 8e-13 Identities = 65/229 (28%), Positives = 101/229 (44%), Gaps = 52/229 (22%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSP 69 LEI+D+ S K+I L VN + GE+ L+G +GSGKSTL + I G Sbjct: 1 LEIKDLHVSVGGKEI------LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV 54 Query: 70 SSGQVLFKGKKIKDPPKD------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRK 123 + G++LFKG+ I D P + I + FQ P + + + Sbjct: 55 TEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFL---------------- 98 Query: 124 RALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL 183 R ++ +GF SGG +R + ++ P L ++DEP S LD+ A L Sbjct: 99 RYVN-------EGF--------SGGEKKRNEILQLLLLEPDLAILDEPDSGLDI-DALRL 142 Query: 184 RTDLIDLWIEGRLPIESMLMVTHNIEEAVLM-CDRVLVFSSNPGRIAEE 231 ++I+ E +S+L++TH + DRV V GRI + Sbjct: 143 VAEVINKLRE---EGKSVLIITHYQRLLDYIKPDRVHVLYD--GRIVKS 186 >gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]. Length = 604 Score = 69.5 bits (170), Expect = 2e-12 Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 26/190 (13%) Query: 25 KISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDP 84 + +L ++NF V GE + + G SG+GK++LLR +AGL SG++ Sbjct: 401 RTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISM-------- 452 Query: 85 PKDISVVF--QTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGF----- 137 P D +++F Q P T+ E + A E ++ + +GL Sbjct: 453 PADSALLFLPQR-PYLPQGTLREALCYPNAAPDFSDAE----LVAVLHKVGLGDLAERLD 507 Query: 138 -ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL 196 E +SGG QR+ FAR + P + +DE SALD T + L L + L Sbjct: 508 EEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLL-----KEEL 562 Query: 197 PIESMLMVTH 206 P +++ V H Sbjct: 563 PDATVISVGH 572 >gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily) [General function prediction only]. Length = 614 Score = 69.2 bits (169), Expect = 2e-12 Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 29/200 (14%) Query: 27 SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPK 86 S N ++ K+NF + V L+G +G+GKSTLL++I G + P+ G Sbjct: 400 SDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIG-------------- 445 Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGID------KEERRKRALSAIDLIGLDGFESA 140 V + P +L L ++ +E+ + +I +G G Sbjct: 446 --MVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSI--LGRFGLTGD 501 Query: 141 HTT----EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL 196 ++S G +RV FAR V P LLL+DEP + LD+ T + L + I+ + G + Sbjct: 502 AQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDAL-AEAINEFPGGVV 560 Query: 197 PIESMLMVTHNIEEAVLMCD 216 + + + E + +C+ Sbjct: 561 LVSHDFRLISQVAEEIWVCE 580 Score = 61.9 bits (150), Expect = 3e-10 Identities = 50/198 (25%), Positives = 72/198 (36%), Gaps = 36/198 (18%) Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81 SL + ++ V ++ G GL+G +GSGKST LR IAG P + F Sbjct: 80 SLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSR 139 Query: 82 KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDL------IGLD 135 + P + V T E L A+ + + K +L + D Sbjct: 140 EIEPSEKQAVQAVVME----TDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDND 195 Query: 136 GFESAH-----------------TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVL 178 FE+ ++SGG R ARA P LLL+DEP + LD+ Sbjct: 196 TFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLE 255 Query: 179 TAENLRTDLIDLWIEGRL 196 W+E L Sbjct: 256 AIV---------WLEEYL 264 >gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.. Length = 282 Score = 66.9 bits (163), Expect = 1e-11 Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 21/160 (13%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVV 91 VL +N + GE++ + G +GSGK++LL +I G + PS G++ G+ IS Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR--------ISFS 103 Query: 92 FQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDL-IGLDGFESAHTT------- 143 Q + P T+ EN+ G+ E R K + A L + F T Sbjct: 104 SQFSWIMPG-TIKENIIFGVSY----DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGI 158 Query: 144 EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL 183 +SGG R+ ARA L L+D PF LDV T + + Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEI 198 >gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 192 Score = 64.8 bits (158), Expect = 5e-11 Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 32/167 (19%) Query: 20 SFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS--SGQVLFK 77 ++++ G +L+ ++ V G + L+G SG+GK+TLL ++AG + +G++L Sbjct: 10 NYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILIN 69 Query: 78 GKKIKDP-PKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDG 136 G+ + + V Q P LTV E + +G+ E+R+ Sbjct: 70 GRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQRK-------------- 115 Query: 137 FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL 183 R+ PS+L +DEP S LD A N+ Sbjct: 116 ---------------RLTIGVELAAKPSILFLDEPTSGLDSQAAYNI 147 >gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.. Length = 218 Score = 63.2 bits (153), Expect = 1e-10 Identities = 52/198 (26%), Positives = 95/198 (47%), Gaps = 24/198 (12%) Query: 29 NLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDI 88 L L +N + +G++ ++G+ G GKS+LL I G + G+V + K +P + Sbjct: 13 GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEA 72 Query: 89 SVVFQTFALF-----PWL---TVLENVELGLKAKGIDKEERRKRALSAIDL-IGLDGFES 139 + +++ PWL TV EN+ G ++R K A L +D Sbjct: 73 TRSRNRYSVAYAAQKPWLLNATVEENITFGSPFN----KQRYKAVTDACSLQPDIDLLPF 128 Query: 140 AHTTEI-------SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL-RTDLIDLW 191 TEI SGG QR+ ARA +++ +D+PFSALD+ +++L + ++ Sbjct: 129 GDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL 188 Query: 192 IEGRLPIESMLMVTHNIE 209 + + ++++VTH ++ Sbjct: 189 QDDK---RTLVLVTHKLQ 203 >gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 330 Score = 61.9 bits (150), Expect = 3e-10 Identities = 64/258 (24%), Positives = 123/258 (47%), Gaps = 39/258 (15%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 LL+I+++ F K G + +D+V+ ++ GEI GL+G SGSGKS + + I G V+ Sbjct: 3 LLDIRNLTIEF--KTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICG-VNKD 59 Query: 71 SGQV--------------LFKGKKIKDPPKDISVVFQ--TFALFPWLTV----LENVELG 110 + +V L ++ K ++S++FQ L P V ++N+ Sbjct: 60 NWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIP-A 118 Query: 111 LKAKGIDKEE---RRKRALSAIDLIGLDGFE---SAHTTEISGGMLQRVGFARAFVVFPS 164 KG + R++RA+ + +G+ + ++ E++ G Q+V A A P Sbjct: 119 WTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPR 178 Query: 165 LLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSN 224 LL+ DEP ++++ T + L L + ++L+++H+++ D++ V Sbjct: 179 LLIADEPTNSMEPTTQAQIFRLLSRL---NQNSNTTILLISHDLQMISQWADKINVLYC- 234 Query: 225 PGRIAE----EVLISIPH 238 G+ E E L+++PH Sbjct: 235 -GQTVESAPSEELVTMPH 251 >gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]. Length = 593 Score = 61.9 bits (150), Expect = 3e-10 Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 34/211 (16%) Query: 13 EIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSG 72 E QDI +SF +++ VL +N + G++V ++G+SG+GK+TLLR+I G Sbjct: 379 EFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGE 438 Query: 73 QVLFKGKKIKDPPKDISVVFQTFALFPWL---TVLE-----------NVELGLKAKGIDK 118 + + PK+ P T+LE VE+ L G+ Sbjct: 439 EKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEI-LNRAGLSD 497 Query: 119 EERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVL 178 +R S E+S G +R A+ P++LL+DE + LD L Sbjct: 498 AVLYRRKFS----------------ELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDEL 541 Query: 179 TAENLRTDLIDLWIEGRLPIESMLMVTHNIE 209 TA + + +L E + + ++VTH E Sbjct: 542 TAVRVARKISELAREAGITL---IVVTHRPE 569 >gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.. Length = 207 Score = 61.1 bits (148), Expect = 6e-10 Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 28/204 (13%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP-----K 86 VL V+F V +GE +G++GR+G+GKSTL+ + + G++ G I P Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEIS 146 ++++ Q LF + L +E AL S +S Sbjct: 83 SLTIIPQDPTLF-----SGTIRSNLDPFDEYSDEEIYGALRV----------SEGGLNLS 127 Query: 147 GGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTH 206 G Q + ARA + P +L++DE +++D T LI I ++L + H Sbjct: 128 QGQRQLLCLARALLKRPRVLVLDEATASIDYATDA-----LIQKTIREEFTNSTILTIAH 182 Query: 207 NIEEAVLMCDRVLVFSSNPGRIAE 230 + ++ D++LV + G + E Sbjct: 183 RL-RTIIDYDKILVMDA--GEVKE 203 >gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]. Length = 248 Score = 60.4 bits (146), Expect = 9e-10 Identities = 58/225 (25%), Positives = 100/225 (44%), Gaps = 34/225 (15%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 L+++ D+ +S L +SG V +GEI+ L+G +G+GKSTLL +AG+ Sbjct: 3 LMQLNDVAESTRLGPLSGE----------VRAGEILHLVGPNGAGKSTLLARMAGMT-SG 51 Query: 71 SGQVLFKGKKIK-----DPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA 125 SG + F G+ ++ + + + + Q + V + L K R Sbjct: 52 SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDK------TRTEL 105 Query: 126 LSAI-DLIGLDGFESAHTTEISGGMLQRVGFARAFV-VFP------SLLLMDEPFSALDV 177 L+ + + LD T ++SGG QRV A + + P LLL+DEP ++LDV Sbjct: 106 LNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDV 165 Query: 178 LTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFS 222 L L L +G +++M +H++ + R + Sbjct: 166 AQQSALDRLLSALCQQGL----AIVMSSHDLNHTLRHAHRAWLLK 206 >gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).. Length = 166 Score = 59.8 bits (145), Expect = 2e-09 Identities = 40/169 (23%), Positives = 63/169 (37%), Gaps = 54/169 (31%) Query: 17 ICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--------VS 68 ++ SL G +L+ ++F + G+ + + G SG+GKS+L R +AGL Sbjct: 2 ELENLSLATPDGRVLL-KDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60 Query: 69 PSSGQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSA 128 P +LF ++ P + ++PW VL Sbjct: 61 PEGEDLLFLPQR----PYLPLGTLREQLIYPWDDVL------------------------ 92 Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177 SGG QR+ FAR + P + +DE SALD Sbjct: 93 -----------------SGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 >gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 255 Score = 59.5 bits (144), Expect = 2e-09 Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 36/207 (17%) Query: 42 SGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP--KDISVVFQTFALFP 99 G+++GL+G +G GKST L+I+AG + P+ G K DPP +I F+ L Sbjct: 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLG-------KFDDPPDWDEILDEFRGSELQN 77 Query: 100 WLTVLENVELGL------------KAKG-----IDKEERRKRALSAIDLIGLDGFESAHT 142 + T L ++ + KG + K++ R + +D + L + Sbjct: 78 YFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNI 137 Query: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV---LTAENLRTDLIDLWIEGRLPIE 199 ++SGG LQRV A A DEP S LD+ L A L +L + Sbjct: 138 DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE-------DDN 190 Query: 200 SMLMVTHNIEEAVLMCDRVLVFSSNPG 226 +L+V H++ + D + PG Sbjct: 191 YVLVVEHDLAVLDYLSDYIHCLYGEPG 217 >gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism, General function prediction only]. Length = 659 Score = 59.5 bits (144), Expect = 2e-09 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 17/163 (10%) Query: 27 SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPK 86 +G+LL+ + ++ V SG+ + + G SG GK++LLR++ GL + G++ PK Sbjct: 446 NGDLLI-ENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDG---GPK 501 Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKE----ERRKRALSAIDLIGL-DGFESAH 141 D+ + Q T+ + V LKA+ +D + E R L + L L + Sbjct: 502 DLFFLPQR-PYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLD 560 Query: 142 TT-------EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177 +S G QR+ FAR F P ++DE SA+ Sbjct: 561 QQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTE 603 >gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]. Length = 546 Score = 57.6 bits (139), Expect = 7e-09 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 5/79 (6%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD----- 87 + +N + GE+V L+G +GSGKSTL ++ GL P SG++L GK + + Sbjct: 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKL 398 Query: 88 ISVVFQTFALFPWLTVLEN 106 S VF + LF L E Sbjct: 399 FSAVFSDYHLFDQLLGPEG 417 >gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA processing and modification]. Length = 592 Score = 57.2 bits (138), Expect = 8e-09 Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 26/154 (16%) Query: 43 GEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP--KDISVVFQTFALFPW 100 G+++GL+G +G GKST L+I+AG P+ G + +PP ++I F+ L + Sbjct: 100 GQVLGLVGTNGIGKSTALKILAGKQKPNLG-------RYDNPPDWQEILTYFRGSELQNY 152 Query: 101 LT-VLE-NVELGLK----------AKG-----IDKEERRKRALSAIDLIGLDGFESAHTT 143 T +LE N++ +K KG +D+++ R D + L+ Sbjct: 153 FTKILEDNLKAIIKPQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVE 212 Query: 144 EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177 ++SGG LQR A V + + DEP S LDV Sbjct: 213 QLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDV 246 Score = 43.7 bits (103), Expect = 9e-05 Identities = 49/196 (25%), Positives = 78/196 (39%), Gaps = 33/196 (16%) Query: 41 SSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQ------VLFKGKKIKDPPKDISVVFQT 94 S EI+ +LG +G+GK+T +R++AG + P G V +K +KI PK V Q Sbjct: 365 SDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKIS--PKREGTVRQL 422 Query: 95 FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVG 154 + + L ++I +SGG LQRV Sbjct: 423 LHTKIR---DAYMHPQFVNDV-------MKPLQIENIID------QEVQGLSGGELQRVA 466 Query: 155 FARAFVVFPSLLLMDEPFSALDV---LTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEA 211 A + L+DEP + LD + A + I + + ++ +V H+ A Sbjct: 467 LALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFI---LHAK---KTAFVVEHDFIMA 520 Query: 212 VLMCDRVLVFSSNPGR 227 + DRV+VF P Sbjct: 521 TYLADRVIVFEGQPSV 536 >gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism, Translation, ribosomal structure and biogenesis]. Length = 582 Score = 57.3 bits (138), Expect = 9e-09 Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 22/211 (10%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 L I + + + ++ + S + +G +G GKSTLL+I+ G ++P+ Sbjct: 362 NLRISYV----AFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPT 417 Query: 71 SGQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAID 130 G V + P I Q F V + G +EE R+ + Sbjct: 418 RGIV------GRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRR----HLG 467 Query: 131 LIGLDGFESAHT-TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLID 189 GL G + + +SGG RV FA P LL++DEP + LD + L L + Sbjct: 468 SFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKN 527 Query: 190 LWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220 G +++V+H+ E +C + V Sbjct: 528 F--NG-----GVVLVSHDEEFISSLCKELWV 551 Score = 56.1 bits (135), Expect = 2e-08 Identities = 55/191 (28%), Positives = 77/191 (40%), Gaps = 38/191 (19%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA-----GLVSPSSGQVLFKGKKIK 82 G ++L+K N +S G GL+GR+G GKSTLLR IA G + Sbjct: 91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQS 150 Query: 83 DPPKDISV---VFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFES 139 D + + L LT+ E + L G E + + Sbjct: 151 VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQ---------------- 194 Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL--- 196 T +SGG R+ ARA P LLL+DEP + LDV+ W+E L Sbjct: 195 -PTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAV---------AWLENYLQTW 244 Query: 197 PIESMLMVTHN 207 I S L+V+H+ Sbjct: 245 KITS-LIVSHD 254 >gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.. Length = 257 Score = 56.6 bits (136), Expect = 1e-08 Identities = 61/227 (26%), Positives = 99/227 (43%), Gaps = 32/227 (14%) Query: 12 LEIQDICQSF--SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP 69 ++I D+C + +LK VL V + G+ VG+ GR+GSGKS+L +V Sbjct: 20 IKIHDLCVRYENNLKP------VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI 73 Query: 70 SSGQVLFKGKKIKDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKR 124 G+++ G I P +S++ Q LF ++ L + ++R Sbjct: 74 FDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-----GSIRFNLDPECKCTDDRLWE 128 Query: 125 ALSAIDLI--------GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176 AL L GLD + S G Q ARAFV S+L+MDE +++D Sbjct: 129 ALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASID 188 Query: 177 VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSS 223 + T EN+ ++ R +++ + H + +L D VLV S Sbjct: 189 MAT-ENILQKVVMTAFADR----TVVTIAHRV-STILDADLVLVLSR 229 >gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated. Length = 252 Score = 56.2 bits (136), Expect = 2e-08 Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 27/186 (14%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 +LEI++ L +L +N +++ GEI ++G +GSGKSTL ++IAG P+ Sbjct: 7 ILEIKN------LHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG--HPA 58 Query: 71 ----SGQVLFKGKKIKD-PPKDIS-----VVFQTFALFPWLTVLENVELGLKAKGIDKEE 120 G +LFKG+ I D P++ + + FQ P ++ + + L +K + Sbjct: 59 YKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGL 118 Query: 121 RRKRALS-------AIDLIGLDG-FESAHTTE-ISGGMLQRVGFARAFVVFPSLLLMDEP 171 L + L+G+D F S + E SGG +R + ++ L ++DE Sbjct: 119 PELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDET 178 Query: 172 FSALDV 177 S LD+ Sbjct: 179 DSGLDI 184 >gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.. Length = 275 Score = 56.2 bits (135), Expect = 2e-08 Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 27/224 (12%) Query: 15 QDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQV 74 Q + + K G VL+ ++F++S G+ VGLLGR+GSGKSTLL L++ + G + Sbjct: 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDI 60 Query: 75 LFKGKKIKDPP-----KDISVVFQTFALFPWLTVLENV---------ELGLKAKGIDKEE 120 G P K V+ Q +F T +N+ E+ A+ + + Sbjct: 61 QIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGKWSDEEIWKVAEEVGLKS 119 Query: 121 RRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180 ++ +D + +DG +S G Q + AR+ + +LL+DEP + LD +T Sbjct: 120 VIEQFPGQLDFVLVDG-----GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITY 174 Query: 181 ENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSN 224 + +R L + + ++++ H I EA+L C R LV N Sbjct: 175 QVIRKTLKQAFADC-----TVILSEHRI-EAMLECQRFLVIEEN 212 >gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.. Length = 144 Score = 55.5 bits (134), Expect = 3e-08 Identities = 23/52 (44%), Positives = 36/52 (69%) Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQV 74 L K G L+L ++ ++ G+ +GL+GR+G+GKSTLL++IAG + P G V Sbjct: 6 LSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57 Score = 42.4 bits (100), Expect = 2e-04 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 7/90 (7%) Query: 135 DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194 + + ++SGG R+ A+ + P+LLL+DEP + LD+ + E L L + G Sbjct: 61 STVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PG 118 Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSN 224 ++++V+H+ + +++ Sbjct: 119 -----TVILVSHDRYFLDQVATKIIELEDG 143 >gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]. Length = 807 Score = 52.8 bits (126), Expect = 2e-07 Identities = 57/176 (32%), Positives = 79/176 (44%), Gaps = 32/176 (18%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA--GLVSPSSGQVLFKGKKIK-DP 84 G LL + + G GL+G +G GK+TLL+ IA L P + VL +++ D Sbjct: 276 GKLL-FVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADS 334 Query: 85 PKDISVVFQT----FALFPW------------LTV---LENVELGLKAKGIDKEERRKRA 125 I V + AL T L+ V L+A G D E R R Sbjct: 335 TSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARR 394 Query: 126 LSAIDLIGLDGF----ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177 + L GL GF + TT+ SGG RV ARA + P+LL++DEP + LD+ Sbjct: 395 I----LAGL-GFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDL 445 Score = 48.9 bits (116), Expect = 3e-06 Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 20/154 (12%) Query: 35 KVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQT 94 K++F + + ++G +G GKSTLL+++ G + P+ G+ L K +++ I Q Sbjct: 605 KLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGE-LRKNHRLR-----IGWFDQH 658 Query: 95 FALFPWLTVLEN-VELGLKAKGIDKEERRKRALSAIDLIGLDGFES-AHTTEI---SGGM 149 L E VE + + +E RK+ +G G S AHT +I SGG Sbjct: 659 AN--EALNGEETPVEYLQRKFNLPYQEARKQ-------LGTFGLASHAHTIKIKDLSGGQ 709 Query: 150 LQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL 183 RV A + P +L++DEP + LD+ + + L Sbjct: 710 KARVALAELALGGPDVLILDEPTNNLDIESIDAL 743 >gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 177 Score = 49.6 bits (118), Expect = 1e-06 Identities = 44/187 (23%), Positives = 70/187 (37%), Gaps = 58/187 (31%) Query: 40 VSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALFP 99 V GE++G++G +G+GK+T ++I+A GQ++ G + Q L Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILA-------GQLIPNGDNDEWDGITPVYKPQYIDL-- 72 Query: 100 WLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAF 159 SGG LQRV A A Sbjct: 73 ----------------------------------------------SGGELQRVAIAAAL 86 Query: 160 VVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVL 219 + + L DEP + LD+ N + L EG+ ++ L+V H++ + DR+ Sbjct: 87 LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGK---KTALVVEHDLAVLDYLSDRIH 143 Query: 220 VFSSNPG 226 VF PG Sbjct: 144 VFEGEPG 150 >gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]. Length = 728 Score = 47.7 bits (113), Expect = 7e-06 Identities = 41/174 (23%), Positives = 81/174 (46%), Gaps = 24/174 (13%) Query: 17 ICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF 76 I ++ + +G++LV K+ F + G + + G +G GKS+L RI+ GL ++ Sbjct: 483 ILENIPVITPAGDVLV-PKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP------VY 535 Query: 77 KGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR----KRALSAIDLI 132 G P +I + Q P+++ + + ++ +R+ + + +D++ Sbjct: 536 NGLLSIPRPNNIFYIPQR----PYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIV 591 Query: 133 GLD-------GFESAH--TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177 L+ G+++ +SGG QR+G AR F P L+DE SA+ + Sbjct: 592 HLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSI 645 >gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only, Transcription]. Length = 291 Score = 38.1 bits (88), Expect = 0.006 Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 26/172 (15%) Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQT- 94 N ++ +G L+G +G+GK+TLL+I++G G V G + D S+ Sbjct: 33 FNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLG---RSAFHDTSLESSGD 89 Query: 95 -------------FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAH 141 A L + E + G D ERR++ ID++ +D H Sbjct: 90 LSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREK---LIDILDIDLRWRMH 146 Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIE 193 ++S G +RV + +LL+DE LDVL R DL++ E Sbjct: 147 --KVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLA----RADLLEFLKE 192 >gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 176 Score = 36.8 bits (85), Expect = 0.013 Identities = 43/206 (20%), Positives = 73/206 (35%), Gaps = 44/206 (21%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVF 92 L ++ ++ +V + G SGSGKSTL+ + Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV------------NEGLYASGKARLISFLPKFS 58 Query: 93 QTFALF-PWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQ 151 + +F L L +V LG G + LS +SGG LQ Sbjct: 59 RNKLIFIDQLQFLIDVGLGYLTLG--------QKLST----------------LSGGELQ 94 Query: 152 RVGFARAFVV--FPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIE 209 RV A +L ++DEP + L L + L G +++++ HN Sbjct: 95 RVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG----NTVILIEHN-L 149 Query: 210 EAVLMCDRVLVFSSNPGRIAEEVLIS 235 + + D ++ F G+ +V+ S Sbjct: 150 DVLSSADWIIDFGPGSGKSGGKVVFS 175 >gnl|CDD|147726 pfam05729, NACHT, NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931. Length = 165 Score = 34.2 bits (79), Expect = 0.064 Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 39/159 (24%) Query: 48 LLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENV 107 L G +GSGK+TLL+ +A + +GK P+D VF +L Sbjct: 5 LQGEAGSGKTTLLQKLA--------LLWAQGK----LPQDFDFVF-------FLPC---- 41 Query: 108 ELGLKAKGIDKEERRKRALSAIDLIGLDGFES-AHTTEISGGMLQRVGFARAFVVFPSLL 166 +E R S DL+ E A +E+ +L+ R ++ L Sbjct: 42 ----------RELSRSGEASLADLLFSQWPEPAAPVSEVWAVILEL--PERVLLILDGL- 88 Query: 167 LMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVT 205 DE S L L L+ + +L + L++T Sbjct: 89 --DELASDLGQLDGPLPVLTLLSSLLRKKLLPGASLLLT 125 >gnl|CDD|39383 KOG4181, KOG4181, KOG4181, Uncharacterized conserved protein [Function unknown]. Length = 491 Score = 32.0 bits (72), Expect = 0.32 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%) Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAG 65 L+ +F V +G+LG GSGKSTLL ++A Sbjct: 181 LLHKTTDFTV-----IGVLGGQGSGKSTLLSLLAA 210 >gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204 Score = 31.7 bits (72), Expect = 0.37 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%) Query: 152 RVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL--PIESMLMVTHNIE 209 R+ A F +L +DEP + LD EN+ L ++ IE R ++++TH+ E Sbjct: 129 RLALAETFGSNCGILALDEPTTNLD---EENIEESLAEI-IEERKSQKNFQLIVITHDEE 184 >gnl|CDD|30199 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.. Length = 273 Score = 31.8 bits (72), Expect = 0.43 Identities = 12/25 (48%), Positives = 15/25 (60%) Query: 45 IVGLLGRSGSGKSTLLRIIAGLVSP 69 I+G+ G SG GKST LR + L Sbjct: 1 IIGVAGDSGCGKSTFLRRLTSLFGS 25 >gnl|CDD|33644 COG3854, SpoIIIAA, ncharacterized protein conserved in bacteria [Function unknown]. Length = 308 Score = 31.1 bits (70), Expect = 0.58 Identities = 17/42 (40%), Positives = 23/42 (54%) Query: 48 LLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDIS 89 ++G GK+TLLR IA L+S Q L K I D +I+ Sbjct: 142 IIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIA 183 >gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]. Length = 935 Score = 30.5 bits (69), Expect = 1.0 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDI 88 L ++ + G + G SGSGKSTL I LV P+ + L K+ P K I Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTL--INDTLV-PALARHLNGTKEEPGPYKKI 669 >gnl|CDD|29988 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.. Length = 271 Score = 29.9 bits (67), Expect = 1.4 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLR-IIAGLVSPSSGQVLFKGKKIKDPPKDISV 90 VL+K+ + GE++ L +G GK+T LR L++ +V +++P + Sbjct: 19 VLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGT--ISLEEPVVRTAR 76 Query: 91 VFQT 94 Sbjct: 77 RLLG 80 >gnl|CDD|31356 COG1162, COG1162, Predicted GTPases [General function prediction only]. Length = 301 Score = 29.9 bits (67), Expect = 1.5 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 3/41 (7%) Query: 42 SGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQV---LFKGK 79 +G+I LLG+SG GKSTL+ + ++ +G++ L +G+ Sbjct: 163 AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGR 203 >gnl|CDD|33731 COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]. Length = 440 Score = 29.6 bits (66), Expect = 1.6 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 23 LKKIS-GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP 69 L+KIS N ++ E ++G +GSGK+T+L I ++ Sbjct: 3 LRKISLNNFRCFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALNK 50 >gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.. Length = 287 Score = 29.4 bits (66), Expect = 1.9 Identities = 10/24 (41%), Positives = 15/24 (62%) Query: 42 SGEIVGLLGRSGSGKSTLLRIIAG 65 G+ L+G+SG GKSTL+ + Sbjct: 160 KGKTSVLVGQSGVGKSTLINALLP 183 >gnl|CDD|39108 KOG3905, KOG3905, KOG3905, Dynein light intermediate chain [Cell motility]. Length = 473 Score = 29.6 bits (66), Expect = 1.9 Identities = 13/39 (33%), Positives = 22/39 (56%) Query: 37 NFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVL 75 + SG+ V +LG +GSGK++L+ + G + G L Sbjct: 46 RSKLPSGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGL 84 >gnl|CDD|35954 KOG0735, KOG0735, KOG0735, AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]. Length = 952 Score = 29.2 bits (65), Expect = 2.1 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 10/71 (14%) Query: 48 LLGRSGSGKSTLLRIIAGLVS-PSSGQVLF------KGKKIKDPPKDISVVFQTFALF-- 98 L G GSGK+ L++ + S V G ++ K ++ VF + AL+ Sbjct: 436 LNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVF-SEALWYA 494 Query: 99 PWLTVLENVEL 109 P + VL++++ Sbjct: 495 PSIIVLDDLDC 505 >gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258. Length = 161 Score = 29.1 bits (66), Expect = 2.2 Identities = 11/24 (45%), Positives = 14/24 (58%) Query: 42 SGEIVGLLGRSGSGKSTLLRIIAG 65 G+ L G+SG GKSTLL + Sbjct: 34 KGKTSVLAGQSGVGKSTLLNALLP 57 >gnl|CDD|33956 COG4231, COG4231, Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]. Length = 640 Score = 29.1 bits (65), Expect = 2.5 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 7/59 (11%) Query: 221 FSSNPGRIAEEVLISIPHPRNRLSPEFRQIVEKIYALMTKKEEKRLNPLENAPGSGIGI 279 F +PGR + P N L R+++EK A LN +E + + +GI Sbjct: 201 FIKDPGRY-------VRVPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGI 252 >gnl|CDD|48021 cd03457, intradiol_dioxygenase_like, Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.. Length = 188 Score = 29.1 bits (65), Expect = 2.9 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 6/52 (11%) Query: 292 LIEAVMA-PPYNGKADLPDLANSLQLEADRLFHIGESLQLLQLVNLSGGDIT 342 LIE V A PPYN D +F G + +L V L GG ++ Sbjct: 135 LIEEVYATPPYNSNT-----NARTSNADDGIFSDGGAAGMLPTVELLGGSVS 181 >gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]. Length = 4600 Score = 28.9 bits (64), Expect = 3.0 Identities = 13/49 (26%), Positives = 29/49 (59%) Query: 18 CQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL 66 S S +L +L+++ +N+ + E L+G +G+GK+T+++ +A Sbjct: 439 LSGNSFAFTSCSLWLLEQLLWNIQNNEPTLLVGETGTGKTTMIQYLALK 487 >gnl|CDD|146036 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop. Length = 122 Score = 28.9 bits (65), Expect = 3.3 Identities = 9/20 (45%), Positives = 14/20 (70%) Query: 45 IVGLLGRSGSGKSTLLRIIA 64 IV ++G SGK+TL+R + Sbjct: 2 IVLVVGPKDSGKTTLIRKLL 21 >gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 261 Score = 28.6 bits (64), Expect = 3.5 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDI 88 L ++ ++ G + + G SGSGKS+L I + P+ + L K+ I Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSL---INDTLYPALARRLHLKKEQPGNHDRI 63 >gnl|CDD|48380 cd03116, MobB, Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.. Length = 159 Score = 28.7 bits (64), Expect = 3.6 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%) Query: 45 IVGLLGRSGSGKSTLL-RIIAGLV 67 ++G +G SGSGK+TLL ++I L Sbjct: 3 VIGFVGYSGSGKTTLLEKLIPALS 26 >gnl|CDD|30917 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism]. Length = 218 Score = 28.7 bits (64), Expect = 3.7 Identities = 10/31 (32%), Positives = 19/31 (61%) Query: 45 IVGLLGRSGSGKSTLLRIIAGLVSPSSGQVL 75 I+G+ G SGSGK+T+ + ++ + V+ Sbjct: 10 IIGIAGGSGSGKTTVAKELSEQLGVEKVVVI 40 >gnl|CDD|35913 KOG0694, KOG0694, KOG0694, Serine/threonine protein kinase [Signal transduction mechanisms]. Length = 694 Score = 28.3 bits (63), Expect = 3.7 Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 11/124 (8%) Query: 212 VLMCDRVLVFSSNPGRIAEEVLISI-----PHPRNRLSPEFRQIVEKIYALMTKKEEKRL 266 VL+ + ++ S PG EEV SI +PR LS E I+ + L+ K EKRL Sbjct: 556 VLLYEMLVGESPFPGDDEEEVFDSIVNDEVRYPRF-LSKEAIAIMRR---LLRKNPEKRL 611 Query: 267 NPLENAPGS-GIGIFLRHVS-TNLLSGLIEAVMAPPYNGKADLPDLANSLQLEADRLFHI 324 E F R + +LL+ I+ P G D+ + E L Sbjct: 612 GSGERDAEDIKKHPFFRSIDWDDLLNRRIKPPFVPTIKGPEDVSNFDEEFTSEKPALTPS 671 Query: 325 GESL 328 Sbjct: 672 DPRP 675 >gnl|CDD|30002 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.. Length = 326 Score = 28.6 bits (64), Expect = 3.7 Identities = 13/27 (48%), Positives = 17/27 (62%) Query: 38 FNVSSGEIVGLLGRSGSGKSTLLRIIA 64 V G+ +G+ SG GKSTLL +IA Sbjct: 64 LTVGKGQRLGIFAGSGVGKSTLLGMIA 90 >gnl|CDD|30586 COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism]. Length = 201 Score = 28.3 bits (63), Expect = 3.8 Identities = 12/20 (60%), Positives = 16/20 (80%) Query: 45 IVGLLGRSGSGKSTLLRIIA 64 I+GL G GSGKST+ +I+A Sbjct: 4 IIGLTGGIGSGKSTVAKILA 23 >gnl|CDD|133278 cd01876, YihA_EngB, The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170 Score = 28.2 bits (64), Expect = 3.9 Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 1/18 (5%) Query: 44 EIVGLLGRSGSGKSTLLR 61 EI GRS GKS+L+ Sbjct: 1 EIA-FAGRSNVGKSSLIN 17 >gnl|CDD|29987 cd01121, Sms, Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.. Length = 372 Score = 28.3 bits (63), Expect = 4.0 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 4 IAIKDNRLLEIQDICQSFSLKKISGNLLVLDKV-NFNVSSGEIVGLLGRSGSGKSTLLRI 62 ++++ + DI ++ ++I + LD+V + G ++ + G G GKSTLL Sbjct: 43 SGGSASKVIPLSDI-EAEEEERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQ 101 Query: 63 IAGLVSPSSGQVLF 76 +A ++ G+VL+ Sbjct: 102 VAARLAKRGGKVLY 115 >gnl|CDD|38911 KOG3707, KOG3707, KOG3707, Uncharacterized conserved protein [Function unknown]. Length = 844 Score = 28.4 bits (63), Expect = 4.2 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 9/75 (12%) Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197 ++A + SGG+ +R+ F +F S L F + L+ L++ + L+ G+LP Sbjct: 385 QTASSASFSGGLQKRLAF-----LFDSTL---TAFLMMGNLSP-TLKSHAVTLFEVGKLP 435 Query: 198 IESMLMVTHNIEEAV 212 ES+ +EE Sbjct: 436 DESLDSFLSQLEEVQ 450 >gnl|CDD|133260 cd01851, GBP, Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein (GAP) cannot approach. Length = 224 Score = 28.4 bits (64), Expect = 4.3 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 3/26 (11%) Query: 35 KVNFNVSSGEIVGLLGRSGSGKSTLL 60 K F V+ +V + G SGKS LL Sbjct: 2 KAGFPVA---VVSVFGPQSSGKSFLL 24 >gnl|CDD|39438 KOG4237, KOG4237, KOG4237, Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures, Signal transduction mechanisms]. Length = 498 Score = 28.0 bits (62), Expect = 4.9 Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 13/130 (10%) Query: 305 ADLPDLANSLQLEADRLFHIGE----SLQLLQLVNLSGGDITLTESGIRFANLDTDSRKK 360 A+LP ++L+ +++ I +L L+ ++LS +I+ F L + Sbjct: 63 ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDA-FKGLASLLSLV 121 Query: 361 LFAKQLLQHVP------LVNLIRRVLDERRLHSAPAARFRNELEDYMSEEYAQETIDTVV 414 L+ + +P L +L R +L+ ++ R+ + Y + + Sbjct: 122 LYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLY--DNKIQSI 179 Query: 415 SWGRYAELFS 424 G + L + Sbjct: 180 CKGTFQGLAA 189 >gnl|CDD|133298 cd01898, Obg, Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170 Score = 28.1 bits (64), Expect = 5.3 Identities = 11/18 (61%), Positives = 13/18 (72%) Query: 46 VGLLGRSGSGKSTLLRII 63 VGL+G +GKSTLL I Sbjct: 3 VGLVGLPNAGKSTLLSAI 20 >gnl|CDD|30195 cd02022, DPCK, Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.. Length = 179 Score = 27.8 bits (62), Expect = 5.7 Identities = 11/22 (50%), Positives = 16/22 (72%) Query: 45 IVGLLGRSGSGKSTLLRIIAGL 66 I+GL G GSGKST+ +++ L Sbjct: 1 IIGLTGGIGSGKSTVAKLLKEL 22 >gnl|CDD|145224 pfam01935, DUF87, Domain of unknown function DUF87. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands. Length = 218 Score = 27.7 bits (62), Expect = 6.0 Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%) Query: 46 VGLLGRSGSGKSTLLR-IIAGLV 67 +LG +GSGKS + ++ L+ Sbjct: 26 FAILGSTGSGKSNTVAVLLEELL 48 >gnl|CDD|35682 KOG0461, KOG0461, KOG0461, Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]. Length = 522 Score = 27.7 bits (61), Expect = 6.3 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 6/36 (16%) Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 N N+ G+LG SGK+TL R ++ L S ++ Sbjct: 6 SNLNL------GILGHVDSGKTTLARALSELGSTAA 35 >gnl|CDD|145542 pfam02456, Adeno_IVa2, Adenovirus IVa2 protein. IVa2 protein can interact with the adenoviral packaging signal and that this interaction involves DNA sequences that have previously been demonstrated to be required for packaging. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter. Length = 370 Score = 27.7 bits (62), Expect = 6.4 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%) Query: 45 IVGLLGRSGSGKSTLLR--IIAGLVSPSSGQVLF 76 I + G +G GKS LLR + L+ P V F Sbjct: 89 IGVVYGPTGCGKSQLLRNLLSCQLIQPIPETVFF 122 >gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323 Score = 27.7 bits (61), Expect = 6.6 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 5/55 (9%) Query: 213 LMCDRVLVFSSNPGRIAEEVLI-SIPHPRNRLSPEFRQIVEKIYALMTKKEEKRL 266 +MC R+ ++ + R+ E +L+ I PR LSPE + ++ L+ K ++RL Sbjct: 188 MMCGRLPFYNQDHERLFELILMEEIRFPRT-LSPEAKSLLA---GLLKKDPKQRL 238 >gnl|CDD|31262 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]. Length = 366 Score = 27.8 bits (62), Expect = 6.7 Identities = 8/24 (33%), Positives = 18/24 (75%) Query: 187 LIDLWIEGRLPIESMLMVTHNIEE 210 L+DL++ G+LP++ ++ T +E+ Sbjct: 323 LVDLYMAGKLPLDRLVTHTIPLED 346 >gnl|CDD|133370 cd04170, EF-G_bact, Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains only bacterial members. Length = 268 Score = 27.5 bits (62), Expect = 6.7 Identities = 9/15 (60%), Positives = 12/15 (80%) Query: 46 VGLLGRSGSGKSTLL 60 + L+G SGSGK+TL Sbjct: 2 IALVGHSGSGKTTLA 16 >gnl|CDD|30653 COG0305, DnaB, Replicative DNA helicase [DNA replication, recombination, and repair]. Length = 435 Score = 27.5 bits (61), Expect = 7.0 Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 13 EIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA 64 EI+ ++ L + LD++ G+++ + R G GK+ L IA Sbjct: 166 EIEARFENGGLIGVPTGFTDLDEITSGFRPGDLIIVAARPGMGKTALALNIA 217 >gnl|CDD|31351 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]. Length = 441 Score = 27.5 bits (61), Expect = 7.1 Identities = 12/22 (54%), Positives = 16/22 (72%) Query: 43 GEIVGLLGRSGSGKSTLLRIIA 64 G+ +G+ SG GKSTLL +IA Sbjct: 163 GQRIGIFAGSGVGKSTLLGMIA 184 >gnl|CDD|39857 KOG4658, KOG4658, KOG4658, Apoptotic ATPase [Signal transduction mechanisms]. Length = 889 Score = 27.6 bits (61), Expect = 7.5 Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 45 IVGLLGRSGSGKSTLLRII 63 IVG+ G G GK+TL R I Sbjct: 181 IVGIYGMGGVGKTTLARQI 199 >gnl|CDD|73395 cd04733, OYE_like_2_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.. Length = 338 Score = 27.4 bits (61), Expect = 7.6 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%) Query: 136 GFESAHTTE--ISGGMLQRVGFARAFVVFPSL 165 GF + E ++ G + +G AR + P L Sbjct: 300 GFRTRAAMEQALASGAVDGIGLARPLALEPDL 331 >gnl|CDD|145848 pfam02906, Fe_hyd_lg_C, Iron only hydrogenase large subunit, C-terminal domain. Length = 286 Score = 27.6 bits (62), Expect = 7.7 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%) Query: 59 LLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVF 92 LL ++ SP +F G IK P+DI VV Sbjct: 102 LLPNLSTCKSP---MQMF-GALIKTDPEDIFVVS 131 >gnl|CDD|31354 COG1160, COG1160, Predicted GTPases [General function prediction only]. Length = 444 Score = 27.5 bits (61), Expect = 7.7 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 4/31 (12%) Query: 46 VGLLGRSGSGKSTLLRIIAG----LVSPSSG 72 + ++GR GKS+L+ I G +VS +G Sbjct: 181 IAIIGRPNVGKSSLINAILGEERVIVSDIAG 211 >gnl|CDD|34569 COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]. Length = 355 Score = 27.6 bits (61), Expect = 8.0 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 14/64 (21%) Query: 20 SFSLKKISGNLLVLDK-VNFNVSSGEIVGLL-------------GRSGSGKSTLLRIIAG 65 + S++K L L + F L G +GSGK+TLL ++G Sbjct: 136 TLSIRKFPKIKLTLLDLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSG 195 Query: 66 LVSP 69 + Sbjct: 196 FIDS 199 >gnl|CDD|73042 cd03283, ABC_MutS-like, MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange.. Length = 199 Score = 27.1 bits (60), Expect = 8.6 Identities = 9/28 (32%), Positives = 15/28 (53%) Query: 37 NFNVSSGEIVGLLGRSGSGKSTLLRIIA 64 + ++ + + G + SGKST LR I Sbjct: 19 DIDMEKKNGILITGSNMSGKSTFLRTIG 46 >gnl|CDD|29986 cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.. Length = 165 Score = 27.4 bits (60), Expect = 9.0 Identities = 10/32 (31%), Positives = 21/32 (65%) Query: 45 IVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF 76 ++ + G +GSGK+TL +A ++ G+V++ Sbjct: 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVY 32 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.320 0.138 0.387 Gapped Lambda K H 0.267 0.0626 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 5,261,729 Number of extensions: 286127 Number of successful extensions: 1488 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1233 Number of HSP's successfully gapped: 273 Length of query: 438 Length of database: 6,263,737 Length adjustment: 97 Effective length of query: 341 Effective length of database: 4,167,664 Effective search space: 1421173424 Effective search space used: 1421173424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.7 bits)