RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide
binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62]
(438 letters)
>gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 289 bits (740), Expect = 1e-78
Identities = 124/254 (48%), Positives = 169/254 (66%), Gaps = 9/254 (3%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
LLEI+ + +SF G + VL+ +N +V GE V +LG SG GKSTLLR+IAGL P+
Sbjct: 3 LLEIEGVSKSF------GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT 56
Query: 71 SGQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAID 130
SG+VL G+ + P DI VFQ AL PWLTVL+NV LGL+ +G K E R+RA ++
Sbjct: 57 SGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLE 116
Query: 131 LIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
L+GL GFE + ++SGGM QRV ARA P LLL+DEPF ALD LT E L+ +L+ L
Sbjct: 117 LVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRL 176
Query: 191 WIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSPEFRQI 250
W E R ++L+VTH+++EAV + DRV+V S+ PGRI EE+ I +P PR R PEF ++
Sbjct: 177 WEETRK---TVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPRIRGDPEFLEL 233
Query: 251 VEKIYALMTKKEEK 264
E++ + ++ K
Sbjct: 234 REELLEELREEHVK 247
>gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the
ATP-binding subunits of the bacterial ABC-type nitrate
and sulfonate transport systems, respectively. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 220
Score = 279 bits (716), Expect = 1e-75
Identities = 110/225 (48%), Positives = 155/225 (68%), Gaps = 5/225 (2%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
LE++++ +++ G + L+ ++ +V GE V L+G SG GKSTLLRIIAGL P+S
Sbjct: 1 LEVRNVSKTYGGG--GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTS 58
Query: 72 GQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDL 131
G+VL G+ + P D VFQ AL PWLTVL+NV LGL+ +G+ K E R+RA ++L
Sbjct: 59 GEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLEL 118
Query: 132 IGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLW 191
+GL GFE+A+ ++SGGM QRV ARA V P +LL+DEPFSALD LT E L+ +L+D+W
Sbjct: 119 VGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIW 178
Query: 192 IEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISI 236
E ++L+VTH+I+EAV + DRV+V S+ PGRI EV + +
Sbjct: 179 RETGK---TVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVDL 220
>gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute
Transporters-like subgroup. This family is comprised of
proteins involved in the transport of apparently
unrelated solutes and proteins specific for di- and
oligosaccharides and polyols. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 213
Score = 219 bits (559), Expect = 1e-57
Identities = 94/222 (42%), Positives = 136/222 (61%), Gaps = 14/222 (6%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
LE++ + +++ G++ LD ++ V GE + LLG SG GK+TLLR+IAGL P S
Sbjct: 1 LELKGLSKTY------GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS 54
Query: 72 GQVLFKGKKIKDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSA 128
G++L G+ + P ++I +VFQ +ALFP LTV EN+ GLK +G+ K E R R
Sbjct: 55 GEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVREL 114
Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188
++L+GL+G + + E+SGG QRV ARA PSLLL+DEP SALD E LR +L
Sbjct: 115 LELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELK 174
Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
+L E + + VTH+ EEA+ + DR+ V + GRI +
Sbjct: 175 ELQRELGIT---TIYVTHDQEEALALADRIAVMNE--GRIVQ 211
>gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 208 bits (531), Expect = 2e-54
Identities = 94/199 (47%), Positives = 136/199 (68%), Gaps = 3/199 (1%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVV 91
L+ V+ ++SGE+V +LG SG GK+TLL +IAG V+PS G + G++I+ P + VV
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVV 79
Query: 92 FQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQ 151
FQ AL PWL V++NV GL+ +GI+K +RR+ A + L+GL+G E + ++SGGM Q
Sbjct: 80 FQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQ 139
Query: 152 RVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEA 211
RVG ARA V P LLL+DEPF ALD LT E ++ L+DLW + + +L++TH+IEEA
Sbjct: 140 RVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLW---QETGKQVLLITHDIEEA 196
Query: 212 VLMCDRVLVFSSNPGRIAE 230
+ + R++V S PGR+ E
Sbjct: 197 LFLATRLVVLSPGPGRVVE 215
>gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 207 bits (527), Expect = 7e-54
Identities = 103/246 (41%), Positives = 145/246 (58%), Gaps = 23/246 (9%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
LEI+++ +SF G+ +D ++ ++ GE V LLG SG GK+TLLR+IAG PS
Sbjct: 5 ALEIRNVSKSF------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS 58
Query: 71 SGQVLFKGKKIKDPP---KDISVVFQTFALFPWLTVLENVELGLKAKG-IDKEERRKRAL 126
SG++L G+ I D P + I +VFQ++ALFP +TV ENV GLK + + K E + R
Sbjct: 59 SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118
Query: 127 SAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186
A++L+GL+GF ++SGG QRV ARA V P +LL+DEP SALD E +R +
Sbjct: 119 EALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKE 178
Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI-----AEEVLISIPHPRN 241
L +L + L I + + VTH+ EEA+ M DR+ V N GRI EE+ P
Sbjct: 179 LKEL--QRELGI-TFVYVTHDQEEALAMSDRIAVM--NDGRIEQVGTPEEIYE---RPAT 230
Query: 242 RLSPEF 247
R +F
Sbjct: 231 RFVADF 236
>gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 190 bits (484), Expect = 7e-49
Identities = 97/270 (35%), Positives = 155/270 (57%), Gaps = 27/270 (10%)
Query: 27 SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP- 85
+G ++ ++ + +V GEI ++G SGSGKSTL+R++ L+ P+ G++L GK I
Sbjct: 38 TGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSA 97
Query: 86 --------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGF 137
K IS+VFQ+FAL P TVLENV GL+ +G+ K ER +RAL A++L+GL+G+
Sbjct: 98 AELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGY 157
Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197
+ E+SGGM QRVG ARA P +LLMDE FSALD L ++ +L++L + +L
Sbjct: 158 ADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLEL--QAKLK 215
Query: 198 IESMLMVTHNIEEAVLMCDRVLVFSSNPGRI-----AEEVLISIPHPRNRLSPEF----- 247
++++ +TH+++EA+ + DR+ + G I EE+L+ +P N +F
Sbjct: 216 -KTIVFITHDLDEALRIGDRIAIMKD--GEIVQVGTPEEILL---NPANDYVRDFVRNVD 269
Query: 248 RQIVEKIYALMTKKEEKRLNPLENAPGSGI 277
R V +M + + + P +
Sbjct: 270 RSRVLTAKDIMRRPDLLIRKTPGDGPRVAL 299
>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system
belong to the larger ATP-Binding Cassette (ABC)
transporter superfamily. The characteristic feature of
these transporters is the obligatory coupling of ATP
hydrolysis to substrate translocation. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 269
Score = 187 bits (477), Expect = 5e-48
Identities = 90/208 (43%), Positives = 135/208 (64%), Gaps = 12/208 (5%)
Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81
+ K +G + ++ V+ +V GEI ++G SGSGKSTLLR I L+ P+SG+VL G+ I
Sbjct: 29 EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDI 88
Query: 82 KDPP---------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI 132
K IS+VFQ+FAL P TVLENV GL+ +G+ + ER +RA A++L+
Sbjct: 89 AAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELV 148
Query: 133 GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWI 192
GL+G+E + E+SGGM QRVG ARA V P +LLMDE FSALD L ++ +L+ L
Sbjct: 149 GLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA 208
Query: 193 EGRLPIESMLMVTHNIEEAVLMCDRVLV 220
E + ++++ +TH+++EA+ + DR+ +
Sbjct: 209 ELQ---KTIVFITHDLDEALRLGDRIAI 233
>gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase
component of the spermidine/putrescine-preferential
uptake system consisting of PotA, -B, -C, and -D. PotA
has two domains with the N-terminal domain containing
the ATPase activity and the residues required for
homodimerization with PotA and heterdimerization with
PotB. ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 232
Score = 187 bits (476), Expect = 5e-48
Identities = 94/234 (40%), Positives = 141/234 (60%), Gaps = 16/234 (6%)
Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81
++ K G + LD V+ ++ GE LLG SG GK+TLLR+IAG +P+SG++L GK I
Sbjct: 5 NVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI 64
Query: 82 KDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFE 138
+ P + ++ VFQ +ALFP LTV EN+ GL+ K + K E ++R A+DL+ L+G+
Sbjct: 65 TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYA 124
Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198
+ +++SGG QRV ARA V P +LL+DEP ALD+ ++++ +L L + L I
Sbjct: 125 NRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRL--QKELGI 182
Query: 199 ESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIP-----HPRNRLSPEF 247
+ + VTH+ EEA+ M DR+ V N G+I + I P P NR +F
Sbjct: 183 -TFVFVTHDQEEALTMSDRIAVM--NKGKIQQ---IGTPEEIYEEPANRFVADF 230
>gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 184 bits (468), Expect = 5e-47
Identities = 90/222 (40%), Positives = 132/222 (59%), Gaps = 14/222 (6%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
LE++++ +SF G+ VL VN ++ GE V LLG SG GKSTLLR+IAGL P+S
Sbjct: 4 LELKNVRKSF------GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS 57
Query: 72 GQVLFKGKKIKD-PPK--DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSA 128
G++L G+ + D PP+ I++VFQ +AL+P +TV EN+ GLK +G+ K E KR
Sbjct: 58 GEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEV 117
Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188
L+GL+ + ++SGG QRV ARA V P + L+DEP S LD +R+++
Sbjct: 118 AKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIK 177
Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
L + + VTH+ EA+ + DR++V N GRI +
Sbjct: 178 KLH---ERLGTTTIYVTHDQVEAMTLADRIVVM--NDGRIQQ 214
>gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 175 bits (445), Expect = 2e-44
Identities = 85/212 (40%), Positives = 124/212 (58%), Gaps = 9/212 (4%)
Query: 24 KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD 83
KK G+ LD V+F V GEI GLLG +G+GK+TLL+I+AGL+ P+SG++L G +
Sbjct: 12 KKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK 71
Query: 84 PP----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFES 139
P + I V Q +L+P LTV EN+E + G+ KEE +R ++L GL+ +
Sbjct: 72 EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKAN 131
Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199
+SGGM QR+ A A + P LL++DEP S LD + + L +L EG + I
Sbjct: 132 KKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTI- 190
Query: 200 SMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
L+ TH +EEA +CDRV++ + G+I E
Sbjct: 191 --LLSTHILEEAEELCDRVIILND--GKIIAE 218
>gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 175 bits (445), Expect = 2e-44
Identities = 88/228 (38%), Positives = 130/228 (57%), Gaps = 19/228 (8%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
++EI+++ +SF G+ VL ++ +V GE+V ++G SGSGKSTLLR + GL P
Sbjct: 2 MIEIKNLSKSF------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD 55
Query: 71 SGQVLFKGKKIKDPP------KDISVVFQTFALFPWLTVLENVELGL-KAKGIDKEERRK 123
SG + G+ + D + + +VFQ F LFP LTVLENV L K K + K E R+
Sbjct: 56 SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEARE 115
Query: 124 RALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL 183
+AL ++ +GL A+ ++SGG QRV ARA + P ++L DEP SALD +
Sbjct: 116 KALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEV 175
Query: 184 RTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
+ DL EG +M++VTH + A + DRV+ + G+I EE
Sbjct: 176 LDVMKDLAEEGM----TMIIVTHEMGFAREVADRVIFM--DQGKIIEE 217
>gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 174 bits (442), Expect = 5e-44
Identities = 93/238 (39%), Positives = 133/238 (55%), Gaps = 21/238 (8%)
Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82
+KK G LD ++ ++ SGE+V LLG SG+GKSTLLRIIAGL +P +G++ G+ +
Sbjct: 8 VKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLF 67
Query: 83 D----PPKD--ISVVFQTFALFPWLTVLENVELGLKAKGI--DKEERRKRALSAIDLIGL 134
D +D + VFQ +ALFP +TV +N+ GLK + + E R R + L+ L
Sbjct: 68 DVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQL 127
Query: 135 DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194
+G + ++SGG QRV ARA V P +LL+DEPF ALD + LR L L
Sbjct: 128 EGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRL 187
Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI-----AEEVLISIPHPRNRLSPEF 247
+ + + VTH+ EEA+ + DRV+V + GRI +EV HP +R F
Sbjct: 188 GV---TTVFVTHDQEEALELADRVVVLNQ--GRIEQVGPPDEVY---DHPASRFVARF 237
>gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed..
Length = 213
Score = 172 bits (438), Expect = 1e-43
Identities = 85/222 (38%), Positives = 131/222 (59%), Gaps = 14/222 (6%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
+E++++ + F GN+ LD +N +++ GE V LLG SG GK+T LR+IAGL P+S
Sbjct: 1 VELENVTKRF------GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTS 54
Query: 72 GQVLFKGKKIKD-PPK--DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSA 128
G++ G+ + D PPK DI++VFQ +AL+P +TV +N+ GLK + + K+E +R
Sbjct: 55 GRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREV 114
Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188
+L+ ++ ++SGG QRV RA V P + LMDEP S LD +R +L
Sbjct: 115 AELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELK 174
Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
L + RL + + VTH+ EA+ M DR+ V N G+I +
Sbjct: 175 RL--QQRLGT-TTIYVTHDQVEAMTMADRIAVM--NDGQIQQ 211
>gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 172 bits (436), Expect = 2e-43
Identities = 90/227 (39%), Positives = 130/227 (57%), Gaps = 18/227 (7%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
++E +++ + + GN +D VN + GE + L+G SGSGK+T L++I L+ P+
Sbjct: 1 MIEFENVSKRY------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT 54
Query: 71 SGQVLFKGKKIKDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA 125
SG++L G+ I D + I V Q LFP LTV EN+ K G DKE +KRA
Sbjct: 55 SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRA 114
Query: 126 LSAIDLIGLDGFESAHT--TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL 183
+DL+GLD E A E+SGG QRVG ARA P +LLMDEPF ALD +T + L
Sbjct: 115 DELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQL 174
Query: 184 RTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
+ ++ +L E I + VTH+I+EA+ + DR+ V + G I +
Sbjct: 175 QEEIKELQKELGKTI---VFVTHDIDEALKLADRIAVM--DAGEIVQ 216
>gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796
ATP-binding cassette, macrolide-specific ABC-type efflux
carrier (MacAB), and proteins involved in cell division
(FtsE), and release of liporoteins from the cytoplasmic
membrane (LolCDE). They are clustered together
phylogenetically. MacAB is an exporter that confers
resistance to macrolides, while the LolCDE system is not
a transporter at all. An FtsE null mutants showed
filamentous growth and appeared viable on high salt
medium only, indicating a role for FtsE in cell division
and/or salt transport. The LolCDE complex catalyses the
release of lipoproteins from the cytoplasmic membrane
prior to their targeting to the outer membrane..
Length = 218
Score = 170 bits (432), Expect = 7e-43
Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 17/226 (7%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
+E++++ +++ + L V+ ++ GE V ++G SGSGKSTLL I+ GL P+S
Sbjct: 1 IELKNLSKTY--GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTS 58
Query: 72 GQVLFKGKKIKDPP---------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR 122
G+V G I + I VFQ+F L P LT LENVEL L G+ K+ERR
Sbjct: 59 GEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERR 118
Query: 123 KRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAEN 182
+RA ++ +GL + + +E+SGG QRV ARA P ++L DEP LD T +
Sbjct: 119 ERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKE 178
Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228
+ L +L E I ++VTH+ E DR++ G+I
Sbjct: 179 VMELLRELNKEAGTTI---VVVTHD-PELAEYADRIIELRD--GKI 218
>gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The
complex is composed of two ATP-binding proteins (cysA),
two transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 239
Score = 170 bits (431), Expect = 9e-43
Identities = 91/224 (40%), Positives = 131/224 (58%), Gaps = 18/224 (8%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
+E++++ + F G+ + LD V+ ++ SGE+V LLG SGSGK+TLLR+IAGL P S
Sbjct: 3 IEVRNVSKRF------GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDS 56
Query: 72 GQVLFKGKKIKDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGI----DKEERRKR 124
G +LF G+ D P +++ VFQ +ALF +TV +NV GL+ K + E R +
Sbjct: 57 GTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAK 116
Query: 125 ALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184
+ L+ LD + ++SGG QRV ARA V P +LL+DEPF ALD + LR
Sbjct: 117 VHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELR 176
Query: 185 TDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228
L L L + + + VTH+ EEA+ + DRV+V N GRI
Sbjct: 177 RWLRRL--HDELHVTT-VFVTHDQEEALEVADRVVVM--NKGRI 215
>gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 169 bits (430), Expect = 1e-42
Identities = 84/247 (34%), Positives = 135/247 (54%), Gaps = 16/247 (6%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
++E++++ ++F + +G + LD V+ + GEI G++G SG+GKSTLLR+I L P+
Sbjct: 1 MIELENVSKTFG-QTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT 59
Query: 71 SGQVLFKGKKIKDPP--------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR 122
SG V G+ + + I ++FQ F L TV ENV L+ G+ K E +
Sbjct: 60 SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIK 119
Query: 123 KRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAEN 182
+R ++L+GL + ++SGG QRV ARA P +LL DE SALD T ++
Sbjct: 120 QRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQS 179
Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE--VLISIPHPR 240
+ L D+ E L +++++TH +E +CDRV V GR+ EE V +P+
Sbjct: 180 ILELLKDINRELGL---TIVLITHEMEVVKRICDRVAVLDQ--GRLVEEGTVSEVFANPK 234
Query: 241 NRLSPEF 247
+ ++ EF
Sbjct: 235 HAITQEF 241
>gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 169 bits (429), Expect = 1e-42
Identities = 86/233 (36%), Positives = 123/233 (52%), Gaps = 18/233 (7%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
++E++++ + + L + L VN + +GE V ++G SGSGKSTLL ++ GL P+
Sbjct: 1 MIELKNVSKIYGLGG--EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT 58
Query: 71 SGQVLFKGKKIKDPP---------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEER 121
SG+VL GK + K I VFQ F L P LTVLENVEL L G R
Sbjct: 59 SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118
Query: 122 RKRALSAIDLIGLDGFESAHT-TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180
++ A ++++GL+ +E+SGG QRV ARA + P ++L DEP LD TA
Sbjct: 119 KRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTA 178
Query: 181 ENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVL 233
+ + L +L E I +MVTH+ E DRV+ G+I EE L
Sbjct: 179 KEVLELLRELNKERGKTI---IMVTHD-PELAKYADRVIELKD--GKIEEEEL 225
>gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding
components of the bacterial periplasmic histidine and
glutamine permeases, repectively. Histidine permease is
a multisubunit complex containing the HisQ and HisM
integral membrane subunits and two copies of HisP. HisP
has properties intermediate between those of integral
and peripheral membrane proteins and is accessible from
both sides of the membrane, presumably by its
interaction with HisQ and HisM. The two HisP subunits
form a homodimer within the complex. The domain
structure of the amino acid uptake systems is typical
for prokaryote extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein..
Length = 213
Score = 167 bits (424), Expect = 7e-42
Identities = 91/215 (42%), Positives = 122/215 (56%), Gaps = 16/215 (7%)
Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82
L K G+ VL ++ V GE+V ++G SGSGKSTLLR I L P SG ++ G K+
Sbjct: 6 LHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLT 65
Query: 83 DPPKDIS-------VVFQTFALFPWLTVLENVELGL-KAKGIDKEERRKRALSAIDLIGL 134
D K+I+ +VFQ F LFP LTVLEN+ L K KG+ K E +RAL ++ +GL
Sbjct: 66 DDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGL 125
Query: 135 DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV-LTAENLRTDLIDLWIE 193
A+ ++SGG QRV ARA + P ++L DEP SALD L E L + DL E
Sbjct: 126 ADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDV-MKDLAEE 184
Query: 194 GRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228
G +M++VTH + A + DRV+ GRI
Sbjct: 185 GM----TMVVVTHEMGFAREVADRVIFMDD--GRI 213
>gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette)
transport system involved in resistant to organic
solvents; ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 165 bits (419), Expect = 2e-41
Identities = 90/244 (36%), Positives = 133/244 (54%), Gaps = 24/244 (9%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
+E++ + +SF G VL V+ +V GEI+ ++G SGSGKSTLLR+I GL+ P S
Sbjct: 1 IELRGLTKSF------GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS 54
Query: 72 GQVLFKGKKI--------KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEER-R 122
G+VL G+ I + + ++FQ+ ALF LTV ENV L+ EE R
Sbjct: 55 GEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIR 114
Query: 123 KRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAEN 182
+ L ++ +GL G E + E+SGGM +RV ARA + P LLL DEP + LD + +
Sbjct: 115 EIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGV 174
Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE----EVLISIPH 238
+ DLI ++ L + S +MVTH+++ A + DR+ V G+I E L +
Sbjct: 175 I-DDLI-RSLKKELGLTS-IMVTHDLDTAFAIADRIAVLY--DGKIVAEGTPEELRASDD 229
Query: 239 PRNR 242
P R
Sbjct: 230 PLVR 233
>gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding
Protein Dependent) systems that are largely represented
in archaea and eubacteria and are primarily involved in
scavenging solutes from the environment. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 178
Score = 164 bits (418), Expect = 4e-41
Identities = 83/219 (37%), Positives = 114/219 (52%), Gaps = 50/219 (22%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
LE++++ + + G VL+ V+ N+ +GEIV LLG SGSGKSTLLR IAGL P S
Sbjct: 1 LELKNVSKRY------GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDS 54
Query: 72 GQVLFKGKKI-------KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKR 124
G +L G+ + + I +VFQ FALFP LTVLEN+ LGL
Sbjct: 55 GSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL------------- 101
Query: 125 ALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184
SGG QRV ARA + P +LL+DEP SALD +T +R
Sbjct: 102 ---------------------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140
Query: 185 TDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSS 223
L L + + +++VTH+++EA + DRV+V
Sbjct: 141 ALLKSLQAQLGIT---VVLVTHDLDEAARLADRVVVLRD 176
>gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC)
is an ABC-type transporter encoded by metN of the metNPQ
operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate
binding protein. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 233
Score = 163 bits (414), Expect = 1e-40
Identities = 86/229 (37%), Positives = 126/229 (55%), Gaps = 15/229 (6%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
++E++++ + F G + L V+ +V GEI G++GRSG+GKSTL+R I GL P+
Sbjct: 1 MIELKNVSKVFGDTG--GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT 58
Query: 71 SGQVLFKGKKIKDPP--------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR 122
SG VL G + + I ++FQ F L TV ENV L L+ G+ K E
Sbjct: 59 SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE 118
Query: 123 KRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAEN 182
+R L ++L+GL+ A+ ++SGG QRVG ARA P +LL DE SALD T ++
Sbjct: 119 ERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQS 178
Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
+ L D+ E L I +++TH +E +CDRV V G + EE
Sbjct: 179 ILALLRDINRELGLTI---VLITHEMEVVKRICDRVAVMEK--GEVVEE 222
>gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC.
ModC is an ABC-type transporter and the ATPase component
of a molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 161 bits (409), Expect = 3e-40
Identities = 84/213 (39%), Positives = 123/213 (57%), Gaps = 13/213 (6%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
L+++++ L V+ V G+ +LG +GSGKS LL IAG + P S
Sbjct: 1 LKVENLS-------KDWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS 53
Query: 72 GQVLFKGKKIKDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSA 128
G++L GK I + P +DIS V Q +ALFP +TV +N+ GLK + +DK+E ++ L
Sbjct: 54 GKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEI 113
Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188
+++G+D + +SGG QRV ARA VV P +LL+DEPFSALDV T E LR +L
Sbjct: 114 AEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELK 173
Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
+ E + + L VTH+ EEA + D+V +
Sbjct: 174 KIRKEFGVTV---LHVTHDFEEAWALADKVAIM 203
>gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 158 bits (402), Expect = 2e-39
Identities = 86/243 (35%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 5 AIKDNRLLEIQDICQSFSLKK-----ISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTL 59
++ LL ++++ + + +K G + +D V+F++ GE +GL+G SGSGKSTL
Sbjct: 274 PLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTL 333
Query: 60 LRIIAGLVSPSSGQVLFKGK-------KIKDPPKDISVVFQ--TFALFPWLTVLENVELG 110
RI+AGL+ PSSG ++F G+ +++ + I +VFQ +L P +TV + +
Sbjct: 334 ARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEP 393
Query: 111 LKA-KGIDKEERRKRALSAIDLIGLD-GFESAHTTEISGGMLQRVGFARAFVVFPSLLLM 168
L+ G ERR R ++L+GL F + E+SGG QRV ARA + P LL++
Sbjct: 394 LRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLIL 453
Query: 169 DEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228
DEP SALDV + L DL E L + L ++H++ + DRV V GRI
Sbjct: 454 DEPVSALDVSVQAQVLNLLKDLQEELGL---TYLFISHDLAVVRYIADRVAVMYD--GRI 508
Query: 229 AEE 231
EE
Sbjct: 509 VEE 511
Score = 140 bits (355), Expect = 7e-34
Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 25/239 (10%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP- 69
LLE++++ F+ G + + V+F V GEI+G++G SGSGKSTL + GL+
Sbjct: 5 LLEVENLTVEFATDG--GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEG 62
Query: 70 ---SSGQVLFKGKKIKDPP---------KDISVVFQ-TFALFPWLTVLENV--ELGLKAK 114
+SG+V+ G+ + K I+++FQ + + + E
Sbjct: 63 GRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG 122
Query: 115 GIDKEERRKRALSAIDLIGLDGFESAHTT--EISGGMLQRVGFARAFVVFPSLLLMDEPF 172
+ E RKRA+ ++ +GL E ++SGGM QRV A A + P LL+ DEP
Sbjct: 123 KGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPT 182
Query: 173 SALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
+ALDV T + L DL E + ++L +TH++ + DRV+V G I E
Sbjct: 183 TALDVTTQAQILDLLKDLQRELGM---AVLFITHDLGVVAELADRVVVMYK--GEIVET 236
>gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding
component of a bacterial solute transporter that serves
a protective role to cells growing in a hyperosmolar
environment. ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 242
Score = 158 bits (402), Expect = 2e-39
Identities = 85/236 (36%), Positives = 128/236 (54%), Gaps = 20/236 (8%)
Query: 24 KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD 83
K+ G ++ +N ++ GE + L+G SGSGK+T +++I L+ P+SG++ G+ I++
Sbjct: 8 KRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIRE 67
Query: 84 PP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLD--G 136
+ I V Q LFP +TV EN+ L K KE+ R+RA + L+GLD
Sbjct: 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAE 127
Query: 137 FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL 196
F + E+SGG QRVG ARA P LLLMDEPF ALD +T + L+ + L E
Sbjct: 128 FADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELG- 186
Query: 197 PIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIA-----EEVLISIPHPRNRLSPEF 247
++++ VTH+I+EA + DR+ + G I +E+L P N EF
Sbjct: 187 --KTIVFVTHDIDEAFRLADRIAIM--KNGEIVQVGTPDEILR---SPANDFVAEF 235
>gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 156 bits (397), Expect = 9e-39
Identities = 86/252 (34%), Positives = 138/252 (54%), Gaps = 25/252 (9%)
Query: 5 AIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA 64
+ L+E++ + +SF G+ ++LD V+ +V GEI+ +LG SGSGKSTLLR+I
Sbjct: 2 SASPEPLIEVRGVTKSF------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLIL 55
Query: 65 GLVSPSSGQVLFKGKKIKDPPKD--------ISVVFQTFALFPWLTVLENVELGLKA-KG 115
GL+ P G++L G+ I ++ + V+FQ ALF LTV ENV L+
Sbjct: 56 GLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTK 115
Query: 116 IDKEERRKRALSAIDLIGLDG-FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSA 174
+ + R+ L ++L+GL G + +E+SGGM +RV ARA + P LL +DEP S
Sbjct: 116 LPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSG 175
Query: 175 LDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIA----E 230
LD ++A + + +L L + +MVTH+++ + + DRV V + G++
Sbjct: 176 LDPISAGVIDELIRELNDALGLTV---IMVTHDLDSLLTIADRVAVLAD--GKVIAEGTP 230
Query: 231 EVLISIPHPRNR 242
E L++ P R
Sbjct: 231 EELLASDDPWVR 242
>gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily
specific for the transport of dipeptides, oligopeptides
(OppD), and nickel (NikDE). The NikABCDE system of E.
coli belongs to this family and is composed of the
periplasmic binding protein NikA, two integral membrane
components (NikB and NikC), and two ATPase (NikD and
NikE). The NikABCDE transporter is synthesized under
anaerobic conditions to meet the increased demand for
nickel resulting from hydrogenase synthesis. The
molecular mechanism of nickel uptake in many bacteria
and most archaea is not known. Many other members of
this ABC family are also involved in the uptake of
dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF..
Length = 228
Score = 155 bits (394), Expect = 2e-38
Identities = 86/234 (36%), Positives = 127/234 (54%), Gaps = 20/234 (8%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
LLE++++ SF G++ LD V+F++ GE +GL+G SGSGKSTL R I GL+ P+
Sbjct: 1 LLEVKNLSVSFPTGG--GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT 58
Query: 71 SGQVLFKGKKIKDPP--------KDISVVFQ--TFALFPWLTVLENVELGLKAKGI--DK 118
SG ++F GK + K+I +VFQ +L P +T+ E + L+ G K
Sbjct: 59 SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKK 118
Query: 119 EERRKRALSAIDLIGLD-GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
E R++ L + +GL + + E+SGG QRV ARA + P LL+ DEP SALDV
Sbjct: 119 EARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDV 178
Query: 178 LTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
+ L L E L ++L +TH++ + DRV V + G+I EE
Sbjct: 179 SVQAQILDLLKKLQEELGL---TLLFITHDLGVVAKIADRVAVMYA--GKIVEE 227
>gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type
transporter and the ATPase component of a molybdate
transport system that also includes the periplasmic
binding protein ModA and the membrane protein ModB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 214
Score = 155 bits (394), Expect = 2e-38
Identities = 81/197 (41%), Positives = 109/197 (55%), Gaps = 16/197 (8%)
Query: 42 SGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG-------KKIKDPPKD--ISVVF 92
+ E+ G+ G SG+GKSTLLR IAGL P G ++ G KKI PP+ I +VF
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 93 QTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQR 152
Q +ALFP L V EN+ GLK K E R +DL+GLD + + ++SGG QR
Sbjct: 82 QQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQR 139
Query: 153 VGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAV 212
V ARA P LLL+DEPFSALD L +L + +P ++ VTH++ EA
Sbjct: 140 VALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIP---VIFVTHDLSEAE 196
Query: 213 LMCDRVLVFSSNPGRIA 229
+ DR++V GR+
Sbjct: 197 YLADRIVVMED--GRLQ 211
>gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. This ABC transport system of the CbiMNQO family
is involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most of
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 211
Score = 152 bits (387), Expect = 1e-37
Identities = 71/202 (35%), Positives = 110/202 (54%), Gaps = 10/202 (4%)
Query: 27 SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP- 85
G LD ++ + GE V ++G +GSGKSTLLR++ GL+ P+SG+VL GK +
Sbjct: 11 DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSL 70
Query: 86 ----KDISVVFQ-TFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESA 140
+ + +VFQ F TV E V GL+ G+ +EE +R A++L+GL+G
Sbjct: 71 KELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDR 130
Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200
+SGG QRV A + P +LL+DEP + LD L L L EG+ +
Sbjct: 131 SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGK----T 186
Query: 201 MLMVTHNIEEAVLMCDRVLVFS 222
+++VTH+++ + + DRV+V
Sbjct: 187 IIIVTHDLDLLLELADRVIVLE 208
>gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate
transport system. Phosphonates are a class of
organophosphorus compounds characterized by a chemically
stable carbon-to-phosphorus (C-P) bond. Phosphonates
are widespread among naturally occurring compounds in
all kingdoms of wildlife, but only procaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 241
Score = 149 bits (377), Expect = 2e-36
Identities = 77/236 (32%), Positives = 120/236 (50%), Gaps = 26/236 (11%)
Query: 24 KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG----- 78
K L V+ +++ GE V L+G SG+GKSTLLR + GLV P+SG VL G
Sbjct: 8 KTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINK 67
Query: 79 ---KKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAK--------GIDKEERRKRALS 127
K ++ + I ++FQ F L L+VLENV G + G+ +E ++RAL+
Sbjct: 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALA 127
Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187
A++ +GL ++SGG QRV ARA + P L+L DEP ++LD ++ + L
Sbjct: 128 ALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLL 187
Query: 188 IDLWIEGRLPIESMLMVTHNIEEAVLMCDRVL-------VFSSNPGRIAEEVLISI 236
+ E + + ++ H ++ A DR++ VF P + +EVL I
Sbjct: 188 KRINREEGITV---IVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTDEVLDEI 240
>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 148 bits (376), Expect = 2e-36
Identities = 78/231 (33%), Positives = 119/231 (51%), Gaps = 18/231 (7%)
Query: 10 RLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP 69
LL ++++ S L+ V+ + GE +G++G SGSGKSTL R++AGL P
Sbjct: 2 TLLSVRNL--SIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP 59
Query: 70 SSGQVLFKGKKI------KDPPKDISVVFQ--TFALFPWLTVLENVELGLKAKGIDKEER 121
SSG +L GK + K + + +VFQ +L P TV + L+ G+ K ++
Sbjct: 60 SSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQ 119
Query: 122 RKRALSAIDLIGLD-GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180
R +D +GL F E+SGG QR+ ARA + P LL++DEP SALDV
Sbjct: 120 --RIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQ 177
Query: 181 ENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
+ L++L E L + L ++H++ MCDR+ V + G+I E
Sbjct: 178 AQILNLLLELKKERGL---TYLFISHDLALVEHMCDRIAVMDN--GQIVEI 223
>gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type
transporters. This family includes transporters
involved in the uptake of various metallic cations such
as iron, manganese, and zinc. The ATPases of this group
of transporters are very similar to members of
iron-siderophore uptake family suggesting that they
share a common ancestor. The best characterized
metal-type ABC transporters are the YfeABCD system of Y.
pestis, the SitABCD system of Salmonella enterica
serovar Typhimurium, and the SitABCD transporter of
Shigella flexneri. Moreover other uncharacterized
homologs of these metal-type transporters are mainly
found in pathogens like Haemophilus or enteroinvasive E.
coli isolates..
Length = 213
Score = 148 bits (375), Expect = 3e-36
Identities = 71/201 (35%), Positives = 110/201 (54%), Gaps = 12/201 (5%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD 87
G VL+ V+F V GE + ++G +G+GKSTLL+ I GL+ P+SG + GK ++ K
Sbjct: 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKR 69
Query: 88 ISVVFQTFAL---FPWLTVLENVELGLKAK----GIDKEERRKRALSAIDLIGLDGFESA 140
I V Q ++ FP ++V + V +GL + + + A++ +GL
Sbjct: 70 IGYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR 128
Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200
E+SGG QRV ARA V P LLL+DEPF+ +D T E++ L +L EG +
Sbjct: 129 QIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGM----T 184
Query: 201 MLMVTHNIEEAVLMCDRVLVF 221
+L+VTH++ + DRVL+
Sbjct: 185 ILVVTHDLGLVLEYFDRVLLL 205
>gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins
belongs to a multisubunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea,
these transporters usually include an ATP-binding
protein and one or two integral membrane proteins.
Eukaryote systems of the ABCA subfamily display ABC
domains that are quite similar to this family. The
ATP-binding domain shows the highest similarity between
all members of the ABC transporter family. ABC
transporters are a subset of nucleotide hydrolases that
contain a signature motif, Q-loop, and H-loop/switch
region, in addition to, the Walker A motif/P-loop and
Walker B motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins..
Length = 173
Score = 147 bits (374), Expect = 4e-36
Identities = 70/221 (31%), Positives = 112/221 (50%), Gaps = 52/221 (23%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
+E++++ + + G LD ++ V GEI GLLG +G+GK+TL++II GL+ P S
Sbjct: 1 IEVRNLSKRY------GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS 54
Query: 72 GQVLFKGKKIKDPPKD----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALS 127
G++ GK IK P++ I + + +L+ LTV EN++L
Sbjct: 55 GEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKL------------------ 96
Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187
SGGM QR+ A+A + P LL++DEP S LD + L
Sbjct: 97 ------------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELL 138
Query: 188 IDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228
+L EG+ ++L+ +H +EEA +CDRV + ++ GRI
Sbjct: 139 RELKKEGK----TILLSSHILEEAERLCDRVAILNN--GRI 173
>gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter
subfamily is involved in the transport of the
hydrophobic amino acids leucine, isoleucine and valine.
MJ1267 is a branched-chain amino acid transporter with
29% similarity to both the LivF and LivG components of
the E. coli branched-chain amino acid transporter.
MJ1267 contains an insertion from residues 114 to 123
characteristic of LivG (Leucine-Isoleucine-Valine)
homologs. The branched-chain amino acid transporter
from E. coli comprises a heterodimer of ABCs (LivF and
LivG), a heterodimer of six-helix TM domains (LivM and
LivH), and one of two alternative soluble periplasmic
substrate binding proteins (LivK or LivJ)..
Length = 236
Score = 146 bits (370), Expect = 1e-35
Identities = 83/236 (35%), Positives = 124/236 (52%), Gaps = 29/236 (12%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
LE++ + + F G L+ LD V+F+V GEI GL+G +G+GK+TL +I+G + P+S
Sbjct: 1 LEVRGLTKRF------GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTS 54
Query: 72 GQVLFKGKKIKDPPKD------ISVVFQTFALFPWLTVLENVELGLKAKG---------- 115
G VLF G+ I P I FQ LFP LTVLENV + +A+
Sbjct: 55 GSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARAR 114
Query: 116 IDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175
++ E R+RA ++ +GL E+S G +R+ ARA P LLL+DEP + L
Sbjct: 115 REEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGL 174
Query: 176 DVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGR-IAE 230
+ E L + +L G ++L+V H+++ + + DRV V GR IAE
Sbjct: 175 NPEETEELAELIRELRERGI----TVLLVEHDMDVVMSLADRVTVLDQ--GRVIAE 224
>gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 144 bits (366), Expect = 4e-35
Identities = 73/221 (33%), Positives = 121/221 (54%), Gaps = 20/221 (9%)
Query: 8 DNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67
++E++++ S+ GN VL+ ++ +V GEI L+G +G+GKSTLL+ I GL+
Sbjct: 1 MMPMIEVENLTVSY------GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL 54
Query: 68 SPSSGQVLFKGKKIK--DPPKDISVVFQTFAL---FPWLTVLENVELGLKAK----GIDK 118
PSSG++ GK ++ I V Q ++ FP +TV + V LG K
Sbjct: 55 KPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLN 113
Query: 119 EERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVL 178
++ +++ A++ +G++ E+SGG QRV ARA P LLL+DEPF+ +DV
Sbjct: 114 KKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVA 173
Query: 179 TAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVL 219
+ + L +L EG+ ++LMVTH++ + DRV+
Sbjct: 174 GQKEIYDLLKELRQEGK----TVLMVTHDLGLVMAYFDRVI 210
>gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 144 bits (365), Expect = 5e-35
Identities = 73/221 (33%), Positives = 117/221 (52%), Gaps = 20/221 (9%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
LLE++ I +SF G + LD V+ V GE+ LLG +G+GKSTL++I++G+ P
Sbjct: 8 LLELRGISKSF------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD 61
Query: 71 SGQVLFKGKKIKDP-PKD-----ISVVFQTFALFPWLTVLENVELG----LKAKGIDKEE 120
SG++L GK + P+D I+ V Q +L P L+V EN+ LG + ID++
Sbjct: 62 SGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKA 121
Query: 121 RRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180
R+RA + +GLD ++S Q V ARA +L++DEP +AL V
Sbjct: 122 MRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKET 181
Query: 181 ENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
E L + L +G +++ ++H ++E + DR+ V
Sbjct: 182 ERLFDLIRRLKAQGV----AIIYISHRLDEVFEIADRITVL 218
Score = 104 bits (260), Expect = 7e-23
Identities = 63/228 (27%), Positives = 110/228 (48%), Gaps = 22/228 (9%)
Query: 21 FSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGK- 79
++ +SG V D V+F V +GEI+G+ G G+G++ L R + G SSG++L GK
Sbjct: 264 LEVRNLSGGGKVRD-VSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKP 322
Query: 80 -KIKDPPKDIS--VVF-----QTFALFPWLTVLENVELG-----LKAKGIDKEERRKRAL 126
+I+ P I + + ++ L +++ EN+ L + ID+ + R A
Sbjct: 323 VRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAE 382
Query: 127 SAIDLIGLDGF-ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRT 185
I + + +SGG Q+V AR P +L++DEP +DV +
Sbjct: 383 RYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYR 442
Query: 186 DLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVL 233
+ +L EG+ ++LM++ + E + + DR+LV GRI E+
Sbjct: 443 LIRELAAEGK----AILMISSELPELLGLSDRILVMRE--GRIVGELD 484
>gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport
of a variety of lipid compounds. Mutations of members
of ABCA subfamily are associated with human genetic
diseases, such as, familial high-density lipoprotein
(HDL) deficiency, neonatal surfactant deficiency,
degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR)
protein transports vitamin A derivatives in the outer
segments of photoreceptor cells, and therefore, performs
a crucial step in the visual cycle. The ABCA genes are
not present in yeast. However, evolutionary studies of
ABCA genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages..
Length = 220
Score = 143 bits (363), Expect = 8e-35
Identities = 69/216 (31%), Positives = 118/216 (54%), Gaps = 13/216 (6%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
L+I+++ +++ G +D ++ NV GEI GLLG +G+GK+T L+++ G + P+S
Sbjct: 1 LQIRNLTKTYK----KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS 56
Query: 72 GQVLFKGKKIKDPPKD----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALS 127
G G I+ K + Q ALF LTV E++ + KG+ K E ++
Sbjct: 57 GTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVEL 116
Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187
+ ++GL + +SGGM +++ A A + PS+LL+DEP S LD + + DL
Sbjct: 117 LLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAI-WDL 175
Query: 188 IDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSS 223
I +GR S+++ TH+++EA +CDR+ + S
Sbjct: 176 ILEVRKGR----SIILTTHSMDEAEALCDRIAIMSD 207
>gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 143 bits (361), Expect = 1e-34
Identities = 78/228 (34%), Positives = 123/228 (53%), Gaps = 26/228 (11%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF--------KGKKIKD 83
L VN ++ GE+V ++G SG+GKSTLLR + GLV P+SG++LF KGK+++
Sbjct: 19 ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRK 78
Query: 84 PPKDISVVFQTFALFPWLTVLENVELGLKAK--------GIDKEERRKRALSAIDLIGLD 135
+DI ++FQ F L P L+VLENV LG G+ +E + +AL A++ +G+
Sbjct: 79 LRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL 138
Query: 136 GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195
+ +SGG QRV ARA V P ++L DEP ++LD +A+ + L D+ E
Sbjct: 139 DKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDG 198
Query: 196 LPIESMLMVTHNIEEAVLMCDRVL-------VFSSNPGRIAEEVLISI 236
+ + ++ H ++ A DR++ VF + +E L I
Sbjct: 199 ITV---IVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDEALDEI 243
>gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 141 bits (358), Expect = 3e-34
Identities = 80/242 (33%), Positives = 132/242 (54%), Gaps = 28/242 (11%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP- 69
LLE++++ SF G + +D V+F + GEI+G++G SGSGKS L + I GL+
Sbjct: 1 LLEVKNLSVSFPTDA--GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKP 58
Query: 70 ----SSGQVLFKGKKIKDPP---------KDISVVFQ--TFALFPWLTVLENVELGLKA- 113
G++LF GK + K+I+++FQ +L P +T+ + + L+
Sbjct: 59 NARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH 118
Query: 114 -KGIDKEERRKRALSAIDLIGLDGFES---AHTTEISGGMLQRVGFARAFVVFPSLLLMD 169
KG+ K+E ++RA+ ++L+G+ E ++ E+SGGM QRV A A + P LL+ D
Sbjct: 119 GKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIAD 178
Query: 170 EPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIA 229
EP +ALDV + L +L E +++++TH++ + DRV V + GRI
Sbjct: 179 EPTTALDVTVQAQILDLLKELQREKGT---ALILITHDLGVVAEIADRVAVMYA--GRIV 233
Query: 230 EE 231
EE
Sbjct: 234 EE 235
>gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 141 bits (358), Expect = 3e-34
Identities = 71/223 (31%), Positives = 112/223 (50%), Gaps = 19/223 (8%)
Query: 9 NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68
R++E +++ + G L V+ + GE V L+G +GSGKSTLL+++ GL+
Sbjct: 1 LRMIEAENLSFRYP-----GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK 55
Query: 69 PSSGQVLFKGKKIKDPP------KDISVVFQ---TFALFPWLTVLENVELGLKAKGIDKE 119
P+SG+VL G + + +VFQ P TV + V GL+ G+ +E
Sbjct: 56 PTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP--TVEDEVAFGLENLGLPRE 113
Query: 120 ERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179
E +R A++L+GL+ +SGG QRV A + P +LL+DEP + LD
Sbjct: 114 EIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKG 173
Query: 180 AENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFS 222
L L L EG ++++VTH++E + DRV+V
Sbjct: 174 RRELLELLKKLKEEGGK---TIIIVTHDLELVLEYADRVVVLD 213
>gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of
fundamental importance in the cell physiology of
bacteria because phosphate is required as a nutrient.
The Pst system of E. coli comprises four distinct
subunits encoded by the pstS, pstA, pstB, and pstC
genes. The PstS protein is a phosphate-binding protein
located in the periplasmic space. P stA and PstC are
hydrophobic and they form the transmembrane portion of
the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD)..
Length = 227
Score = 139 bits (351), Expect = 2e-33
Identities = 75/224 (33%), Positives = 111/224 (49%), Gaps = 23/224 (10%)
Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV-----SPSSGQVLF 76
L G+ L ++ ++ GEI L+G SG GKSTLLR++ L +P G+VL
Sbjct: 5 DLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLL 64
Query: 77 KGKKIKDPPKD-------ISVVFQTFALFPWLTVLENVELGLKAKGI-DKEERRKRALSA 128
GK I D D + +VFQ FP ++ +NV GL+ GI KEE +R A
Sbjct: 65 DGKDIYDLDVDVLELRRRVGMVFQKPNPFP-GSIYDNVAYGLRLHGIKLKEELDERVEEA 123
Query: 129 IDLIGLDGFES--AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186
+ L H +SGG QR+ ARA P +LL+DEP SALD ++ +
Sbjct: 124 LRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIE-- 181
Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
+L E + ++++VTHN+++A + DR GR+ E
Sbjct: 182 --ELIAELKKEY-TIVIVTHNMQQAARVADRTAFL--LNGRLVE 220
>gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents
ABC transporters involved in peptide antibiotic
resistance. Bacitracin is a dodecapeptide antibiotic
produced by B. licheniformis and B. subtilis. The
synthesis of bacitracin is non-ribosomally catalyzed by
a multienzyme complex BcrABC. Bacitracin has potent
antibiotic activity against gram-positive bacteria. The
inhibition of peptidoglycan biosynthesis is the best
characterized bacterial effect of bacitracin. The
bacitracin resistance of B. licheniformis is mediated by
the ABC transporter Bcr which is composed of two
identical BcrA ATP-binding subunits and one each of the
integral membrane proteins, BcrB and BcrC. B. subtilis
cells carrying bcr genes on high-copy number plasmids
develop collateral detergent sensitivity, a similar
phenomenon in human cells with overexpressed multi-drug
resistance P-glycoprotein..
Length = 208
Score = 137 bits (347), Expect = 6e-33
Identities = 71/212 (33%), Positives = 112/212 (52%), Gaps = 13/212 (6%)
Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82
L K G VLD ++ +V GEI G LG +G+GK+T ++II GL+ P SG++ F GK +
Sbjct: 6 LTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ 65
Query: 83 D---PPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFES 139
+ I + + +P LT EN+ L + GI R+KR +D++GL
Sbjct: 66 KNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAK 121
Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199
S GM QR+G A A + P LL++DEP + LD + LR ++ L +G
Sbjct: 122 KKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGI---- 177
Query: 200 SMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
++L+ +H + E + DR+ + N G++ EE
Sbjct: 178 TVLISSHLLSEIQKVADRIGII--NKGKLIEE 207
>gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC
superfamily [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 1228
Score = 137 bits (346), Expect = 7e-33
Identities = 71/235 (30%), Positives = 119/235 (50%), Gaps = 22/235 (9%)
Query: 7 KDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL 66
+E +++C S+ + ++ +L V+ + SG+ V L+G SGSGKSTL++++A
Sbjct: 346 SIKGEIEFRNVCFSYPSRP---DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARF 402
Query: 67 VSPSSGQVLFKGKKIKDPPKD-----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEER 121
P+SG+VL G+ I++ I +V Q LF T+ EN+ G ++ E
Sbjct: 403 YDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGKPDATREEIEE 461
Query: 122 RKRALSAIDLI-----GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176
+A +A D I G D ++SGG QR+ ARA V P +LL+DE SALD
Sbjct: 462 AAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALD 521
Query: 177 VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
+E + + +D +GR + ++V H + + D++ V G+I E+
Sbjct: 522 A-ESERVVQEALDKASKGR----TTIVVAHRLST-IRNADKIAVMEE--GKIVEQ 568
Score = 93.0 bits (231), Expect = 1e-19
Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 19/213 (8%)
Query: 29 NLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP--- 85
++ VL+ ++ ++ +G+ V L+G SGSGKST++ ++ P +G+V G IKD
Sbjct: 1002 DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKW 1061
Query: 86 --KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-----GLDGFE 138
K I +V Q LF T+ EN+ G + ++ + +A + I G D
Sbjct: 1062 LRKQIGLVSQEPVLFN-GTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRV 1120
Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198
++SGG QR+ ARA + P +LL+DE SALD +E + + +D +EGR I
Sbjct: 1121 GERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDS-ESERVVQEALDRAMEGRTTI 1179
Query: 199 ESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
++ H + + D + V + G++ E+
Sbjct: 1180 ----VIAHRL-STIQNADVIAVLKN--GKVVEQ 1205
>gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 137 bits (346), Expect = 7e-33
Identities = 88/275 (32%), Positives = 132/275 (48%), Gaps = 50/275 (18%)
Query: 11 LLEIQDICQSFSLKKISG---NLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67
LLE++++ + F + K G + +D V+F++ GE +GL+G SG GKSTL R+I GL
Sbjct: 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE 63
Query: 68 SPSSGQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALS 127
P+SG++LF+GK I + KEERR+R L
Sbjct: 64 EPTSGEILFEGKDITK--------------------------------LSKEERRERVLE 91
Query: 128 AIDLIGLDG-FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186
++ +GL F + E+SGG QR+G ARA + P L++ DEP SALDV +
Sbjct: 92 LLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNL 151
Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE----EVLISIPHPRNR 242
L DL E L + L ++H++ + DR+ V G+I E E + S P
Sbjct: 152 LKDLQEELGL---TYLFISHDLSVVRYISDRIAVMYL--GKIVEIGPTEEVFSNP----- 201
Query: 243 LSPEFRQIVEKIYALMTKKEEKRLNPLENAPGSGI 277
L P + ++ + + KR PLE S I
Sbjct: 202 LHPYTKALLSAVPVPDPRLRRKRRIPLEGEVPSPI 236
>gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 136 bits (343), Expect = 2e-32
Identities = 75/219 (34%), Positives = 115/219 (52%), Gaps = 19/219 (8%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
LE++ I + F ++ D V+ +V GEI LLG +G+GKSTL++I+ GL P
Sbjct: 4 ALEMRGITKRF------PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD 57
Query: 71 SGQVLFKGKKIK-DPPKD-----ISVVFQTFALFPWLTVLENVELGLKAK---GIDKEER 121
SG++ GK+++ P+D I +V Q F L P LTV EN+ LGL+ ID+ +
Sbjct: 58 SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQA 117
Query: 122 RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAE 181
R R + GL A ++S G QRV +A LL++DEP + L A+
Sbjct: 118 RARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEAD 177
Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220
L L L EG+ +++ +TH ++E + + DRV V
Sbjct: 178 ELFEILRRLAAEGK----TIIFITHKLKEVMAIADRVTV 212
Score = 89.4 bits (222), Expect = 2e-18
Identities = 69/240 (28%), Positives = 118/240 (49%), Gaps = 29/240 (12%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
+LE++D+ S+K G V D V+F V +GEIVG+ G +G+G+S L+ I+GL P+
Sbjct: 257 VLEVEDL----SVKDRRGVTAVKD-VSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA 311
Query: 71 SGQVLFKGKKIKD--PPKDI---SVVF-----QTFALFPWLTVLENVELG-------LKA 113
SG++L GK + P++ + + L L++ EN+ LG +
Sbjct: 312 SGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRG 371
Query: 114 KGIDKEERRKRALSAIDLIGLD-GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPF 172
+D+ RK A I+ + A +SGG Q++ AR P LL+ +P
Sbjct: 372 GFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPT 431
Query: 173 SALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV 232
LDV E + L++L G+ ++L+++ +++E + + DR+ V GRI V
Sbjct: 432 RGLDVGAIEFIHERLLELRDAGK----AVLLISEDLDEILELSDRIAVIYE--GRIVGIV 485
>gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 135 bits (342), Expect = 2e-32
Identities = 80/197 (40%), Positives = 114/197 (57%), Gaps = 8/197 (4%)
Query: 37 NFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-KDPPKD--ISVVFQ 93
+ V +GEIV +LG SG+GKSTLL +IAG +P+SG++L G PP + +S++FQ
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 94 TFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRV 153
LF LTV +N+ LGL E+R++ +A +GL GF E+SGG QRV
Sbjct: 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRV 138
Query: 154 GFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVL 213
AR V +LL+DEPFSALD + + L E ++ ++LMVTH+ E+A
Sbjct: 139 ALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKM---TLLMVTHHPEDAAR 195
Query: 214 MCDRVLVFSSNPGRIAE 230
+ DRV+ + GRIA
Sbjct: 196 IADRVVFLDN--GRIAA 210
>gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of
a bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilus, NatAB is inducible by
agents such as ethanol and protonophores, which lower
the protonmotive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunomycin- and doxorubicin-efflux system.
Hence, the functional NatAB is presumably assembled
with two copies of a single ATP-binding protein and a
single intergral membrane protein..
Length = 218
Score = 134 bits (339), Expect = 4e-32
Identities = 71/225 (31%), Positives = 110/225 (48%), Gaps = 12/225 (5%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
++ + + F K + +D V+F V GE+ GLLG +G+GK+T LR++AGL+ P
Sbjct: 1 MITADALTKRFRDVK--KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD 58
Query: 71 SGQVLFKGKKIKDPPKD----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRAL 126
+G G + P + + V + L+ LT EN+E G+ +E R
Sbjct: 59 AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLE 118
Query: 127 SAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186
D +G++ S GM Q+V ARA V P +LL+DEP + LDV+ LR
Sbjct: 119 ELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREF 178
Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
+ L G+ +L TH ++E +CDRV+V GR+ E
Sbjct: 179 IRQLRALGK----CILFSTHIMQEVERLCDRVVVLHR--GRVVYE 217
>gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 133 bits (337), Expect = 7e-32
Identities = 80/239 (33%), Positives = 123/239 (51%), Gaps = 30/239 (12%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
LLE++ + + F G L ++ V+ V GEIVGL+G +G+GK+TL +I G PS
Sbjct: 4 LLEVRGLSKRF------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS 57
Query: 71 SGQVLFKGKKIKDPP------KDISVVFQTFALFPWLTVLENVELGLKAKGI-------- 116
SG V+F+G+ I P I+ FQ LFP LTVLENV +G A+
Sbjct: 58 SGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRP 117
Query: 117 ----DKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPF 172
++ E R+RA ++ +GL +S G +R+ ARA P LLL+DEP
Sbjct: 118 RARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPA 177
Query: 173 SALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGR-IAE 230
+ L+ E L + +L G + I L++ H+++ + + DR++V + G IAE
Sbjct: 178 AGLNPEETEELAELIRELRDRGGVTI---LLIEHDMKLVMGLADRIVVLNY--GEVIAE 231
>gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 132 bits (335), Expect = 1e-31
Identities = 81/231 (35%), Positives = 119/231 (51%), Gaps = 22/231 (9%)
Query: 20 SFSLKKIS---GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF 76
++ +S G +LD ++F++ GEI G+LG +GSGKSTLL+ +AGL+ P SG+VL
Sbjct: 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLL 61
Query: 77 KGKKIKDPP-----KDISVVFQTFALFPWLTVLENVELG----LKAKGIDKEERRKRALS 127
GK I K ++ V Q+ + LTV E V LG L G +E +
Sbjct: 62 DGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEE 121
Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187
A++L+GL+ E+SGG QRV ARA +LL+DEP S LD+ + L
Sbjct: 122 ALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELL 181
Query: 188 IDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI-----AEEVL 233
DL E L +++MV H++ A D +++ G+I EEVL
Sbjct: 182 RDLNREKGL---TVVMVLHDLNLAARYADHLILL--KDGKIVAQGTPEEVL 227
>gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 131 bits (331), Expect = 4e-31
Identities = 80/214 (37%), Positives = 112/214 (52%), Gaps = 14/214 (6%)
Query: 24 KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-- 81
K G L V+F++ GE V L G SG+GKSTLL++I G P+ G++L G +
Sbjct: 9 KAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSR 68
Query: 82 ---KDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLD 135
++ P + I VVFQ F L P TV ENV L L+ G E R+R +DL+GL
Sbjct: 69 LKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK 128
Query: 136 GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195
A +++SGG QRV ARA V P++LL DEP LD + +++ L+ E
Sbjct: 129 HKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSW----EIMRLFEEIN 184
Query: 196 LPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIA 229
++LM TH++E M RVL GR+
Sbjct: 185 RLGTTVLMATHDLELVNRMRHRVLALED--GRLV 216
>gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea,
the typical organization consists of one ABC and one or
two IMs. Eukaryote systems of the ABCA subfamily
display ABC domains strongly similar to this family.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region in addition to the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 210
Score = 129 bits (325), Expect = 2e-30
Identities = 71/210 (33%), Positives = 123/210 (58%), Gaps = 11/210 (5%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
LE++++ + F G + LD ++F+V GEI GLLG +G+GK+T +R+I G++ P S
Sbjct: 1 LEVENVTKRF------GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDS 54
Query: 72 GQVLFKGKKIKDPPKD-ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAID 130
G+VLF GK + ++ I + + L+P + V++ + + KG+ KEE R+R ++
Sbjct: 55 GEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLE 114
Query: 131 LIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
+ L + + E+S G Q+V F A + P LL++DEPFS LD + E L+ + +L
Sbjct: 115 RLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIREL 174
Query: 191 WIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220
G+ ++++ TH +E +CDRVL+
Sbjct: 175 ARAGK----TVILSTHQMELVEELCDRVLL 200
>gnl|CDD|34368 COG4754, COG4754, Uncharacterized conserved protein [Function
unknown].
Length = 157
Score = 128 bits (323), Expect = 3e-30
Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 276 GIGIFLRHVSTNLLSGLIEAVMAPPYNGKADLPDLANSLQLEADRLFHIGESLQLLQLVN 335
+ L + L GL+ + +NG+ADLP L ++++ D L I E+ LL LV
Sbjct: 1 MTEMRLPNARIAQLVGLLYVLNNI-FNGRADLPYLEKEMEVDIDDLMPIVETASLLGLVT 59
Query: 336 LSGGDITLTESGIRFANLDTDSRKKLFAKQLLQHVPLVNLIRRVLDERRLHSAPAARFRN 395
GDI LT+ G + RK+LF ++L P +R LD+ + A F
Sbjct: 60 AESGDIILTDEGKEYVESPIRERKELFRQKLKNIEPFATHLRLRLDD--IEEAMEVLFEE 117
Query: 396 ELEDYMSEEYAQETIDTVVSWGRYAELFSYDEQ 428
ELE Y S A + + ++ WG YAEL YD++
Sbjct: 118 ELETYNSPSGAADLLKILIEWGVYAELLEYDDE 150
>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the
LIV-I bacterial ABC-type two-component transport system
that imports neutral, branched-chain amino acids. The
E. coli branched-chain amino acid transporter comprises
a heterodimer of ABC transporters (LivF and LivG), a
heterodimer of six-helix TM domains (LivM and LivH), and
one of two alternative soluble periplasmic substrate
binding proteins (LivK or LivJ). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules..
Length = 222
Score = 127 bits (322), Expect = 4e-30
Identities = 74/226 (32%), Positives = 108/226 (47%), Gaps = 19/226 (8%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
LE++++ + G +L V+ V GEIV LLGR+G+GK+TLL+ I GL+ P S
Sbjct: 1 LEVENLNAGY------GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRS 54
Query: 72 GQVLFKGKKIKDPPKD------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA 125
G + F G+ I P I V + +FP LTV EN+ LG A+ K + R
Sbjct: 55 GSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLER 114
Query: 126 LSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRT 185
+ + L +SGG Q + ARA + P LLL+DEP L E +
Sbjct: 115 VYELFPR-LKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE 173
Query: 186 DLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
+ +L EG ++L+V N A+ + DR V GR+ E
Sbjct: 174 AIRELRDEGV----TILLVEQNARFALEIADRAYVLER--GRVVLE 213
>gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium..
Length = 232
Score = 126 bits (317), Expect = 1e-29
Identities = 66/207 (31%), Positives = 109/207 (52%), Gaps = 10/207 (4%)
Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82
L K G V++ V+ +V GEIVGLLG +G+GK+T +I GLV P SG++L G+ I
Sbjct: 6 LSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDIT 65
Query: 83 DPPKD------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDG 136
P I + Q ++F LTV EN+ L+ +G+ K+ER ++ ++ +
Sbjct: 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH 125
Query: 137 FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL 196
+ + +SGG +RV ARA P LL+DEPF+ +D + ++++ + L G
Sbjct: 126 LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGI- 184
Query: 197 PIESMLMVTHNIEEAVLMCDRVLVFSS 223
+L+ HN+ E + + DR +
Sbjct: 185 ---GVLITDHNVRETLSITDRAYIIYE 208
>gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins..
Length = 220
Score = 126 bits (317), Expect = 2e-29
Identities = 72/213 (33%), Positives = 111/213 (52%), Gaps = 9/213 (4%)
Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82
L K G+ + V+F V GEI GLLG +G+GK+T ++++ L+ P+SG+ G +
Sbjct: 6 LVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVV 65
Query: 83 DPPKD----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFE 138
P++ I +VFQ ++ LT EN+ + + G+ ERR+R +D +GL
Sbjct: 66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAA 125
Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198
SGGM +R+ AR+ V P +L +DEP LD T ++ + L E + I
Sbjct: 126 DRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTI 185
Query: 199 ESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
L+ TH +EEA +CDRV + GRI E
Sbjct: 186 ---LLTTHYMEEAEQLCDRVAIIDH--GRIIAE 213
>gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 125 bits (316), Expect = 2e-29
Identities = 73/214 (34%), Positives = 113/214 (52%), Gaps = 12/214 (5%)
Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81
+L K G LD V+ + G + GLLG +G+GK+TL+RI+A L PSSG + G+ +
Sbjct: 5 NLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDV 63
Query: 82 KDPPKD----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGF 137
P+ I + Q F ++P TV E ++ KGI +E + R ++L+ L
Sbjct: 64 LKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDR 123
Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197
+SGGM +RVG A+A V PS+L++DEP + LD R L +L E R+
Sbjct: 124 AKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSEL-GEDRIV 182
Query: 198 IESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
I S TH +E+ +C++V V + G++ E
Sbjct: 183 ILS----THIVEDVESLCNQVAVLNK--GKLVFE 210
>gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport
system; part of the binding-protein-dependent transport
system tbpA-thiPQ for thiamine and TPP. Probably
responsible for the translocation of thiamine across the
membrane. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 123 bits (310), Expect = 9e-29
Identities = 81/194 (41%), Positives = 111/194 (57%), Gaps = 10/194 (5%)
Query: 40 VSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD-PPKD--ISVVFQTFA 96
+ GEI ++G SGSGKSTLL +IAG +P SG+VL G + PP D +S++FQ
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENN 80
Query: 97 LFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFA 156
LF LTV +NV LGL E R+ A+ +GL G E E+SGG QRV A
Sbjct: 81 LFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALA 140
Query: 157 RAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE-SMLMVTHNIEEAVLMC 215
R V +LL+DEPF+ALD LR +++DL ++ + ++LMVTH E+A +
Sbjct: 141 RVLVRDKPVLLLDEPFAALD----PALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLA 196
Query: 216 DRVLVFSSNPGRIA 229
RV+ + GRIA
Sbjct: 197 QRVVFLDN--GRIA 208
>gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring..
Length = 214
Score = 123 bits (310), Expect = 1e-28
Identities = 72/205 (35%), Positives = 104/205 (50%), Gaps = 12/205 (5%)
Query: 24 KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD 83
K LD +N ++S+GE V L+G SG+GKSTLL++I P+SG + G+ + D
Sbjct: 8 KTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSD 67
Query: 84 PPKD--------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLD 135
I VVFQ F L P V ENV L+ G+ E RKR +A++L+GL
Sbjct: 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS 127
Query: 136 GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195
A E+SGG QRV ARA V P++L+ DEP LD T ++++L +
Sbjct: 128 HKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTT----WEIMNLLKKIN 183
Query: 196 LPIESMLMVTHNIEEAVLMCDRVLV 220
++++ TH E RV+
Sbjct: 184 KAGTTVVVATHAKELVDTTRHRVIA 208
>gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 123 bits (309), Expect = 1e-28
Identities = 83/231 (35%), Positives = 124/231 (53%), Gaps = 17/231 (7%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
++E+ + S ++ + G L +L V V GE V ++G SGSGKSTLL ++AGL PS
Sbjct: 6 IIEVHHL--SKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS 63
Query: 71 SGQVLFKGKKIKDPPKD---------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEER 121
SG+V G+ + +D + VFQ+F L P LT LENV L L+ +G +
Sbjct: 64 SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADS 123
Query: 122 RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAE 181
R A + ++ +GL + + ++SGG QRV ARAF P +L DEP LD T +
Sbjct: 124 RAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183
Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV 232
+ DL L+ R ++++VTH+ + A CDR L S GR+ E+
Sbjct: 184 KI-ADL--LFALNRERGTTLVLVTHDPQLAA-RCDRQLRLRS--GRLVEDA 228
>gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 121 bits (304), Expect = 5e-28
Identities = 75/214 (35%), Positives = 112/214 (52%), Gaps = 13/214 (6%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
+LE+ D+ +S+ K + + V+F GEI GLLG +G+GK+TLLR+IA L+ P
Sbjct: 1 MLEVTDLTKSYGSKVQA-----VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD 55
Query: 71 SGQVLFKGKKIKDPP----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRAL 126
SG+V G P + I V+F L+ LT EN++ + G+ ++E + R
Sbjct: 56 SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIA 115
Query: 127 SAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186
+ L + E S GM Q+V ARA V PS+L++DEP S LD+ T
Sbjct: 116 ELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDF 175
Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220
+ L EGR I S +H ++E +CDRV+V
Sbjct: 176 IKQLKNEGRAVIFS----SHIMQEVEALCDRVIV 205
>gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 120 bits (303), Expect = 6e-28
Identities = 67/210 (31%), Positives = 120/210 (57%), Gaps = 11/210 (5%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
LEI+ + +SF KK +D ++F V GEI GLLG +G+GK+T R+I GL+ P+
Sbjct: 3 LEIEGVTKSFGDKK------AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTE 56
Query: 72 GQVLFKGKKIKDPPKD-ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAID 130
G++ + G + K+ I + + L+P +TV + ++ + KG+ K E +K+ + ++
Sbjct: 57 GEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLE 116
Query: 131 LIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
+ + G ++ E+S G Q++ F A + P LL++DEPFS LD + E L+ + +L
Sbjct: 117 RLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFEL 176
Query: 191 WIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220
EG +++ +H +E +CDR+L+
Sbjct: 177 KEEGA----TIIFSSHRMEHVEELCDRLLM 202
>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like
transporters are involved in drug, peptide, and lipid
export. They belong to the subfamily C of the
ATP-binding cassette (ABC) superfamily of transport
proteins. The ABCC subfamily contains transporters with
a diverse functional spectrum that includes ion
transport, cell surface receptor, and toxin secretion
activities. The MRP-like family, simlar to all ABC
proteins, have a common four-domain core structure
constituted by two membrane-spanning domains, each
composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 171
Score = 120 bits (303), Expect = 7e-28
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 53/215 (24%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
+E +++ S+ VL V+ + GE V ++G SGSGKSTLL+++ L P+S
Sbjct: 1 IEFKNVSFSYP----GRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTS 56
Query: 72 GQVLFKGKKIKDPPKD-----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRAL 126
G++L G ++D + I+ V Q LF T+ EN+
Sbjct: 57 GEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI------------------- 96
Query: 127 SAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186
+SGG QR+ ARA + P +L++DE SALD T E L +
Sbjct: 97 ------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPET-EALILE 137
Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
+ +G+ +++++ H + + DR++V
Sbjct: 138 ALRALAKGK----TVIVIAHRL-STIRDADRIIVL 167
>gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 120 bits (302), Expect = 7e-28
Identities = 80/240 (33%), Positives = 122/240 (50%), Gaps = 33/240 (13%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
LE++D+ + + G VL V+ ++G+++ ++G SGSGKST LR I L PS+
Sbjct: 7 LEVEDLHKRY------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA 60
Query: 72 GQVLFKGKKIKDPP------------------KDISVVFQTFALFPWLTVLENV-ELGLK 112
G + G++I+ + +VFQ F L+ +TVLENV E +
Sbjct: 61 GSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVH 120
Query: 113 AKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPF 172
G+ K E +RA + +G+ A+ +SGG QRV ARA + P ++L DEP
Sbjct: 121 VLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPT 180
Query: 173 SALDV-LTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
SALD L E L+ + DL EGR +M++VTH + A + V+ G+I EE
Sbjct: 181 SALDPELVGEVLKV-MQDLAEEGR----TMVVVTHEMGFARDVSSHVIFLHQ--GKIEEE 233
>gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 120 bits (303), Expect = 7e-28
Identities = 76/228 (33%), Positives = 113/228 (49%), Gaps = 19/228 (8%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
+LE++++ + G + L V+ V GEIV LLGR+G+GK+TLL+ I GLV P
Sbjct: 3 MLEVENLSAGY------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR 56
Query: 71 SGQVLFKGKKIKDPPKD------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKR 124
SG+++F G+ I P I+ V + +FP LTV EN+ LG A+ + + R
Sbjct: 57 SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDL 116
Query: 125 ALSAIDLI-GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL 183
+L L + +SGG Q + ARA + P LLL+DEP L E +
Sbjct: 117 E-EVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI 175
Query: 184 RTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
+ +L EG + I L+V N A+ + DR V + GRI
Sbjct: 176 FEAIKELRKEGGMTI---LLVEQNARFALEIADRGYVLEN--GRIVLS 218
>gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt The KpsT/Wzt ABC transporter
subfamily is involved in extracellular polysaccharide
export. Among the variety of membrane-linked or
extracellular polysaccharides excreted by bacteria, only
capsular polysaccharides, lipopolysaccharides, and
teichoic acids have been shown to be exported by ABC
transporters. A typical system is made of a conserved
integral membrane and an ABC. In addition to these
proteins, capsular polysaccharide exporter systems
require two 'accessory' proteins to perform their
function: a periplasmic (E.coli) or a lipid-anchored
outer membrane protein called OMA (Neisseria
meningitidis and Haemophilus influenzae) and a
cytoplasmic membrane protein MPA2..
Length = 224
Score = 120 bits (302), Expect = 9e-28
Identities = 65/212 (30%), Positives = 102/212 (48%), Gaps = 13/212 (6%)
Query: 20 SFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGK 79
K G L V+F V GE +GL+GR+G+GKSTLLR++AG+ P SG V +G+
Sbjct: 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR 84
Query: 80 KIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFES 139
+ F P LT EN+ L + G+ ++E ++ I+ L F
Sbjct: 85 VS--SLLGLGGGFN-----PELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFID 137
Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199
S GM R+ FA A + P +LL+DE + D E + L +L +G+
Sbjct: 138 LPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGK---- 193
Query: 200 SMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
++++V+H+ +CDR LV G+I +
Sbjct: 194 TVILVSHDPSSIKRLCDRALVLEK--GKIRFD 223
>gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. The CbiMNQO family ABC transport system is
involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 205
Score = 118 bits (298), Expect = 3e-27
Identities = 68/216 (31%), Positives = 113/216 (52%), Gaps = 18/216 (8%)
Query: 13 EIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSG 72
I++I S+ +LD ++ ++ +GEI+ L G++G+GK+TL +I+AGL+ SSG
Sbjct: 1 RIENISFSYK-----KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG 55
Query: 73 QVLFKGKKI--KDPPKDISVVFQT--FALFPWLTVLENVELGLKAKGIDKEERRKRALSA 128
+L GK I K+ K I V Q + LF +V E + LGLK E+
Sbjct: 56 SILLNGKPIKAKERRKSIGYVMQDVDYQLFT-DSVREELLLGLKELDAGNEQAET----V 110
Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188
+ + L + H +SGG QR+ A A + LL+ DEP S LD E + +
Sbjct: 111 LKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIR 170
Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSN 224
+L +G+ +++++TH+ E +CDRVL+ ++
Sbjct: 171 ELAAQGK----AVIVITHDYEFLAKVCDRVLLLANG 202
>gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters,
involved in the uptake of siderophores, heme, and
vitamin B12, are widely conserved in bacteria and
archaea. Only very few species lack representatives of
the siderophore family transporters. The E. coli BtuCD
protein is an ABC transporter mediating vitamin B12
uptake. The two ATP-binding cassettes (BtuD) are in
close contact with each other, as are the two
membrane-spanning subunits (BtuC); this arrangement is
distinct from that observed for the E. coli lipid
flippase MsbA. The BtuC subunits provide 20
transmembrane helices grouped around a translocation
pathway that is closed to the cytoplasm by a gate
region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters..
Length = 180
Score = 117 bits (296), Expect = 5e-27
Identities = 67/195 (34%), Positives = 95/195 (48%), Gaps = 36/195 (18%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD 87
G VLD ++ ++ +GEIVG+LG +G+GKSTLL+ +AGL+ PSSG++L GK +
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSP- 68
Query: 88 ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRAL--SAIDLIGLDGFESAHTTEI 145
KE RK A A++L+GL E+
Sbjct: 69 ------------------------------KELARKIAYVPQALELLGLAHLADRPFNEL 98
Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVT 205
SGG QRV ARA P +LL+DEP S LD+ L L L E +++MV
Sbjct: 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGK---TVVMVL 155
Query: 206 HNIEEAVLMCDRVLV 220
H++ A DRV++
Sbjct: 156 HDLNLAARYADRVIL 170
>gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 117 bits (295), Expect = 6e-27
Identities = 78/239 (32%), Positives = 125/239 (52%), Gaps = 24/239 (10%)
Query: 11 LLEIQDICQSFSLKK-----ISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAG 65
LLE++D+ F +K +L +D ++ + G+ +GL+G SGSGKSTL +
Sbjct: 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLR 335
Query: 66 LVSPSSGQVLFKGKKIKDPP--------KDISVVFQT--FALFPWLTVLENVELGLK--A 113
L+ PS G++ F G+ I + + VVFQ +L P +TV + +E GL+
Sbjct: 336 LI-PSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHE 394
Query: 114 KGIDKEERRKRALSAIDLIGLDG-FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPF 172
+ ER +R + A++ +GLD + + E SGG QR+ ARA ++ P L+L+DEP
Sbjct: 395 PKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPT 454
Query: 173 SALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
SALD + L DL + L S L ++H++ +C RV+V G+I E+
Sbjct: 455 SALDRSVQAQVLDLLRDLQQKHGL---SYLFISHDLAVVRALCHRVIVMRD--GKIVEQ 508
Score = 99.1 bits (247), Expect = 2e-21
Identities = 71/244 (29%), Positives = 116/244 (47%), Gaps = 27/244 (11%)
Query: 8 DNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL- 66
LL I+++ S + + G + + ++F++ +GE + L+G SGSGKS I GL
Sbjct: 3 TMPLLSIRNL--SVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL 60
Query: 67 ----VSPSSGQVLFKGKKIKDPPK---------DISVVFQT--FALFPWLTVLENVELGL 111
+ SG +LF G+ + + I ++FQ +L P T+ + + L
Sbjct: 61 PSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVL 120
Query: 112 KA-KGIDKEERRKRALSAIDLIGLD---GFESAHTTEISGGMLQRVGFARAFVVFPSLLL 167
+ +G+ + R RAL ++L+G+ A+ E+SGG QRV A A P LL+
Sbjct: 121 RLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLI 180
Query: 168 MDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGR 227
DEP +ALDV + L +L E + ++L +TH++ DRV V G
Sbjct: 181 ADEPTTALDVTVQAQILDLLKELQAELGM---AILFITHDLGIVRKFADRVYVMQH--GE 235
Query: 228 IAEE 231
I E
Sbjct: 236 IVET 239
>gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 117 bits (295), Expect = 6e-27
Identities = 66/210 (31%), Positives = 105/210 (50%), Gaps = 20/210 (9%)
Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81
+ ++ GN + NF + + I L G SGSGK++L+ +IAGL P G++ G+ +
Sbjct: 5 NFRQRLGNFAL--DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVL 62
Query: 82 KDPPKDISV---------VFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI 132
D K I + VFQ LFP TV N+ G+ + ++ + L+
Sbjct: 63 VDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQ------LVALL 116
Query: 133 GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWI 192
G++ + +SGG QRV RA + P LLLMDEP ++LD+ + L L
Sbjct: 117 GIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRD 176
Query: 193 EGRLPIESMLMVTHNIEEAVLMCDRVLVFS 222
E +PI L V+H+++E + + DRV+V
Sbjct: 177 EINIPI---LYVSHSLDEVLRLADRVVVLE 203
>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 157
Score = 116 bits (293), Expect = 9e-27
Identities = 71/206 (34%), Positives = 93/206 (45%), Gaps = 60/206 (29%)
Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82
L G LD V+ + +GEIV L+G +GSGKSTLLR IAGL+ P+SG++L GK I
Sbjct: 5 LSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIA 64
Query: 83 DPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGF 137
P + I V Q
Sbjct: 65 KLPLEELRRRIGYVPQ-------------------------------------------- 80
Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197
+SGG QRV ARA ++ P LLL+DEP S LD + E L L +L EGR
Sbjct: 81 -------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGR-- 131
Query: 198 IESMLMVTHNIEEAVLMCDRVLVFSS 223
++++VTH+ E A L DRV+V
Sbjct: 132 --TVIIVTHDPELAELAADRVIVLKD 155
>gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 116 bits (291), Expect = 1e-26
Identities = 67/238 (28%), Positives = 118/238 (49%), Gaps = 25/238 (10%)
Query: 8 DNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67
D L +++ +S+ +K V++ V+ V+SGEIVGLLG +G+GK+T +I GLV
Sbjct: 1 DMSTLVAENLAKSYKKRK------VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLV 54
Query: 68 SPSSGQVLFKGKKIKDPPKD------ISVVFQTFALFPWLTVLENVELGLKAKGIDKE-- 119
P SG++L + I P I + Q ++F LTV +N+ L+ + D +
Sbjct: 55 RPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKA 114
Query: 120 ERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179
ER++ + ++ + + +SGG +RV ARA P +L+DEPF+ +D +
Sbjct: 115 ERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA 174
Query: 180 AENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRV-------LVFSSNPGRIAE 230
+++ + L G +L+ HN+ E + +CDR ++ +P I
Sbjct: 175 VIDIQRIIKHLKDRGI----GVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228
>gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 115 bits (290), Expect = 2e-26
Identities = 66/200 (33%), Positives = 101/200 (50%), Gaps = 13/200 (6%)
Query: 21 FSLKKIS---GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS---SGQV 74
LK +S +L VNF ++ GEIV L+G SG GKSTLL + G ++ +G++
Sbjct: 3 LCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGEL 62
Query: 75 LFKGKKIKDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDL 131
+++ P + I ++FQ LFP L+V +N+ L A + RR A +A++
Sbjct: 63 WLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPAT-LKGNARRNAANAALER 121
Query: 132 IGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLW 191
GLDG +SGG RV RA + P LL+DEPFS LDV + R +
Sbjct: 122 SGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV 181
Query: 192 IEGRLPIESMLMVTHNIEEA 211
+P + VTH++++
Sbjct: 182 RAAGIPT---VQVTHDLQDV 198
>gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin
exporters. Many non-lantibiotic bacteriocins of lactic
acid bacteria are produced as precursors which have
N-terminal leader peptides that share similarities in
amino acid sequence and contain a conserved processing
site of two glycine residues in positions -1 and -2. A
dedicated ATP-binding cassette (ABC) transporter is
responsible for the proteolytic cleavage of the leader
peptides and subsequent translocation of the
bacteriocins across the cytoplasmic membrane..
Length = 220
Score = 114 bits (288), Expect = 4e-26
Identities = 76/214 (35%), Positives = 115/214 (53%), Gaps = 33/214 (15%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK--DPP---K 86
LD V+ + +GE V ++GR GSGKSTLL+++AGL P+SG VL G I+ DP +
Sbjct: 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR 78
Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTT--- 143
+I V Q LF + T+ +N+ LG D E R L A +L G+ F + H
Sbjct: 79 NIGYVPQDVTLF-YGTLRDNITLGAPL--ADDE----RILRAAELAGVTDFVNKHPNGLD 131
Query: 144 --------EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195
+SGG Q V ARA + P +LL+DEP SA+D+ + E L+ L + +
Sbjct: 132 LQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERL-RQLLGDK 190
Query: 196 LPIESMLMVTHNIEEAVL-MCDRVLVFSSNPGRI 228
+++++TH ++L + DR++V S GRI
Sbjct: 191 ----TLIIITHRP--SLLDLVDRIIVMDS--GRI 216
>gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related
proteins, ABC superfamily [Lipid transport and
metabolism, General function prediction only].
Length = 885
Score = 111 bits (279), Expect = 3e-25
Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 11/206 (5%)
Query: 23 LKKI-SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81
L K+ G + ++F V GE GLLG +G+GK+T +++ G P+SG+ L KG I
Sbjct: 570 LSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDI 629
Query: 82 K------DPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLD 135
K + Q AL+ LT E++E + +G+ + + + L+GL
Sbjct: 630 TVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLG 689
Query: 136 GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195
+ + SGG +R+ FA A + PS++L+DEP + LD R L D+ R
Sbjct: 690 PYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKA----RRHLWDIIARLR 745
Query: 196 LPIESMLMVTHNIEEAVLMCDRVLVF 221
+++++ +H++EEA +C R +
Sbjct: 746 KNGKAIILTSHSMEEAEALCTRTAIM 771
>gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 111 bits (279), Expect = 4e-25
Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 23/222 (10%)
Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81
S + + VL+ ++ + GE V ++GRSGSGKSTLL+++ GL P G++L G +
Sbjct: 478 SFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDL 537
Query: 82 KDPPKD-----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA-LSAIDL---- 131
D + V Q LF ++ EN+ LG EE + A L+
Sbjct: 538 NDIDLASLRRQVGYVLQDPFLFSG-SIRENIALG--NPEATDEEIIEAAQLAGAHEFIEN 594
Query: 132 --IGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLID 189
+G D +SGG QR+ ARA + P +LL+DE SALD T E + +
Sbjct: 595 LPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPET-EAIILQNLL 653
Query: 190 LWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
++GR I ++ H + + DR++V G+I E+
Sbjct: 654 QILQGRTVI----IIAHRL-STIRSADRIIVLDQ--GKIVEQ 688
>gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 111 bits (278), Expect = 5e-25
Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 11/199 (5%)
Query: 24 KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD 83
+ L ++F + GE VG++G +G+GKSTLL++IAG+ P+SG+V GK
Sbjct: 34 GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK--VA 91
Query: 84 PPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTT 143
P ++ F P LT EN+ L G+ ++E ++ I+ L F
Sbjct: 92 PLIELGAGFD-----PELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVK 146
Query: 144 EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLM 203
S GM R+ F+ A V P +LL+DE + D + ++ E +++++
Sbjct: 147 TYSSGMYARLAFSVATHVEPDILLLDEVLAVGD----AAFQEKCLERLNELVEKNKTIVL 202
Query: 204 VTHNIEEAVLMCDRVLVFS 222
V+H++ CDR +
Sbjct: 203 VSHDLGAIKQYCDRAIWLE 221
>gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 110 bits (277), Expect = 7e-25
Identities = 72/225 (32%), Positives = 110/225 (48%), Gaps = 34/225 (15%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS-----GQVLFKGKKIK 82
G+ L +N ++ ++ L+G SG GKSTLLR + + G+VL GK I
Sbjct: 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIY 77
Query: 83 DPPKD-------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGL- 134
DP D + +VFQ FP +++ +NV GL+ GI +E + S++ L
Sbjct: 78 DPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALW 136
Query: 135 -----DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA---ENLRTD 186
+SA +SGG QR+ ARA V P +LLMDEP SALD ++ E L T+
Sbjct: 137 DEVKDRLHKSALG--LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITE 194
Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
L + ++++VTHN+++A + D F G + E
Sbjct: 195 LKKKY--------TIVIVTHNMQQAARVSDYTAFF--YLGELVEF 229
>gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 108 bits (272), Expect = 2e-24
Identities = 68/221 (30%), Positives = 109/221 (49%), Gaps = 18/221 (8%)
Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG---- 78
+ G L + + GE + LLG SG+GKS+LLR++ L P SG + G
Sbjct: 8 INCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFD 67
Query: 79 -------KKIKDPPKDISVVFQTFALFPWLTVLEN-VELGLKAKGIDKEERRKRALSAID 130
K I+D +++ +VFQ + L+P LTV EN +E + G+ K++ RA +
Sbjct: 68 FSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLK 127
Query: 131 LIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
+ L + + +SGG QRV ARA ++ P +LL DEP +ALD + ++ +
Sbjct: 128 RLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD----PEITAQIVSI 183
Query: 191 WIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
E + ++VTH +E A RV+ + G I E+
Sbjct: 184 IKELAETGITQVIVTHEVEVARKTASRVVYMEN--GHIVEQ 222
>gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 108 bits (270), Expect = 4e-24
Identities = 72/229 (31%), Positives = 115/229 (50%), Gaps = 26/229 (11%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD-PPKDIS- 89
+LD V+ ++ GE++ +LG +G+GKSTLL+ ++G +SP SG+V G + PP++++
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 90 ---VVFQTFAL-FPWLTVLENVELGLKA--KGIDKEERRKRALSAIDLIGLDGFESAHTT 143
V+ Q +L FP+ TV E V++G G + EE + A A+ L G
Sbjct: 76 HRAVLPQNSSLAFPF-TVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYR 134
Query: 144 EISGGMLQRVGFARAF------VVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197
+SGG QRV AR V L +DEP SALD+ + L EG
Sbjct: 135 TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREG--- 191
Query: 198 IESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSPE 246
++L V H++ A DR+++ GR+ I+ P++ L+ E
Sbjct: 192 -GAVLAVLHDLNLAAQYADRIVLLHQ--GRV-----IASGSPQDVLTDE 232
>gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 108 bits (270), Expect = 4e-24
Identities = 70/226 (30%), Positives = 114/226 (50%), Gaps = 20/226 (8%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
LLE++ + KI L+ ++ +V +GE + + G SG GKSTLL+I+A L+SP+
Sbjct: 3 LLELKQVGYLAGDAKI------LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT 56
Query: 71 SGQVLFKGKKIK--DPP---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA 125
SG +LF+G+ + P + +S QT ALF TV +N+ + + ++ R A
Sbjct: 57 SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIR--NRRPDRAAA 113
Query: 126 LSAIDLIGLDG-FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184
L + L + + TE+SGG QR+ R P +LL+DE SALD N+
Sbjct: 114 LDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIE 173
Query: 185 TDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
+ E + + L +TH+ ++A+ D+V+ PG E
Sbjct: 174 EMIHRYVREQNVAV---LWITHDKDQAIRHADKVITLQ--PGHAGE 214
>gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 107 bits (268), Expect = 6e-24
Identities = 69/214 (32%), Positives = 110/214 (51%), Gaps = 19/214 (8%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD 87
G VL ++F++ GE V ++G SGSGKSTL++++ L P+SG++L G I+D D
Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLD 399
Query: 88 -----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-----GLDGF 137
I +V Q LF T+ EN+ LG ++ E + +A + I G D
Sbjct: 400 SLRKRIGIVSQDPLLFSG-TIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTI 458
Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197
+SGG QR+ ARA + P +L++DE SALD T ++ D + ++GR
Sbjct: 459 VGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQ-DALKKLLKGR-- 515
Query: 198 IESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
+ L++ H + + DR++V + GRI E
Sbjct: 516 --TTLIIAHRL-STIKNADRIIVL--DNGRIVER 544
>gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of
the carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
Pentoses include xylose, arabinose, and ribose.
Important hexoses include glucose, galactose, and
fructose. In members of the Carb_monos family, the
single hydrophobic gene product forms a homodimer while
the ABC protein represents a fusion of two
nucleotide-binding domains. However, it is assumed that
two copies of the ABC domains are present in the
assembled transporter..
Length = 163
Score = 106 bits (266), Expect = 1e-23
Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 67/216 (31%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
LE++ I + F G + LD V+ +V GE+ LLG +G+GKSTL++I++GL P S
Sbjct: 1 LELRGITKRF------GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS 54
Query: 72 GQVLFKGKKIK-DPPKD-----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA 125
G++L GK++ P+D I++V+Q
Sbjct: 55 GEILVDGKEVSFASPRDARRAGIAMVYQ-------------------------------- 82
Query: 126 LSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRT 185
+S G Q V ARA LL++DEP +AL E L
Sbjct: 83 -------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK 123
Query: 186 DLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
+ L +G +++ ++H ++E + DRV V
Sbjct: 124 VIRRLRAQGV----AVIFISHRLDEVFEIADRVTVL 155
>gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is
expressed in the mitochondria. Although the specific
function of ATM1 is unknown, its disruption results in
the accumulation of excess mitochondrial iron, loss of
mitochondrial cytochromes, oxidative damage to
mitochondrial DNA, and decreased levels of cytosolic
heme proteins. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 236
Score = 102 bits (256), Expect = 2e-22
Identities = 68/210 (32%), Positives = 108/210 (51%), Gaps = 19/210 (9%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87
VL V+F + +G+ V ++G SGSGKST+LR++ SSG +L G+ I++ D
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR 75
Query: 88 -ISVVFQTFALFPWLTVLENVELG-LKAKGIDKEERRKRALSAIDLIGL-DGFESA---H 141
I VV Q LF T+ N+ G A + E K A ++ DG+++
Sbjct: 76 AIGVVPQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGER 134
Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESM 201
++SGG QRV ARA + P +LL+DE SALD T ++ L D+ +GR +
Sbjct: 135 GLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDV-SKGR----TT 189
Query: 202 LMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
+++ H + ++ D+++V GRI E
Sbjct: 190 IVIAHRLST-IVNADKIIVLKD--GRIVER 216
>gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a
mitochondrial ATP-binding cassette protein involved in
iron homeostasis and one of four ABC transporters
expressed in the mitochondrial inner membrane, the other
three being MDL1(ABC7), MDL2, and ATM1. In fact, the
yeast MDL1 (multidrug resistance-like protein 1) and
MDL2 (multidrug resistance-like protein 2) transporters
are also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another..
Length = 238
Score = 102 bits (255), Expect = 3e-22
Identities = 60/213 (28%), Positives = 108/213 (50%), Gaps = 19/213 (8%)
Query: 29 NLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP--- 85
++ +L ++ + G+ V L+G SG GKST++ ++ P+SG++L G I+D
Sbjct: 15 DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRW 74
Query: 86 --KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-GL-DGFES-- 139
I +V Q LF T+ EN+ G ++ E + + D I L DG+++
Sbjct: 75 LRSQIGLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLV 133
Query: 140 -AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198
+++SGG QR+ ARA + P +LL+DE SALD +E L + +D ++GR
Sbjct: 134 GERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDA-ESEKLVQEALDRAMKGR--- 189
Query: 199 ESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
+ +++ H + + D + V G++ E+
Sbjct: 190 -TTIVIAHRL-STIRNADLIAVLQ--NGQVVEQ 218
>gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide or belong in different
polypeptide chains.
Length = 119
Score = 101 bits (254), Expect = 3e-22
Identities = 53/124 (42%), Positives = 68/124 (54%), Gaps = 12/124 (9%)
Query: 57 STLLRIIAGLVSPSSGQVLFKGKKIKDPP------KDISVVFQTFALFPWLTVLENVELG 110
STLL++I GL+ P+SG +L G+ D K I VVFQ LFP LTV EN+ G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 111 LKAKGIDKEERRKRALSAIDLIGLDGFESAH-TTEISGGMLQRVGFARAFVVFPSLLLMD 169
L+ K E RA A++ +GL F +SGG QRV ARA + P LLL+D
Sbjct: 61 LRDK-----EADARAEEALERVGLPDFLDRSPVGTLSGGQKQRVAIARALLKKPKLLLLD 115
Query: 170 EPFS 173
EP +
Sbjct: 116 EPTA 119
>gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast
cancer resistance protein) [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 613
Score = 100 bits (250), Expect = 9e-22
Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 18/206 (8%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS---SGQVLFKGK--KIKDPPK 86
+L V+ GE++ ++G SGSGK+TLL +AG ++ SG++L G+ + K
Sbjct: 45 ILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRK 104
Query: 87 DISVVFQTFALFPWLTVLEN----VELGLKAKGIDKEERRKRALSAIDLIGLDG-----F 137
V Q L P LTV E L L + KEE+R+R I +GL+
Sbjct: 105 ISGYVQQDDVLLPTLTVRETLRFSALLRLP-SSLSKEEKRERVEEVISELGLEKCADTLI 163
Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197
+ +SGG +RV A + PS+L +DEP S LD +A + L L GR
Sbjct: 164 GNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTV 223
Query: 198 IESMLMVTHNIEEAVLMCDRVLVFSS 223
I ++ + + E + D++L+ S
Sbjct: 224 ICTIHQPSSELFE---LFDKLLLLSE 246
>gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 100 bits (250), Expect = 1e-21
Identities = 70/237 (29%), Positives = 114/237 (48%), Gaps = 29/237 (12%)
Query: 8 DNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67
+ LE++++ ++ ++ L N ++ GE V +LGRSGSGKSTLL+++AG
Sbjct: 333 TGQALELRNVSFTYPGQQT----KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW 388
Query: 68 SPSSGQVLFKGKKI-----KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR 122
P G + G +I + + ISV+ Q LF T+ +N+ L A +E
Sbjct: 389 DPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFS-GTLRDNLRL---ANPDASDEEL 444
Query: 123 KRALSAIDL--------IGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSA 174
AL + L GL+ + +SGG +R+ ARA + L L+DEP
Sbjct: 445 WAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEG 504
Query: 175 LDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
LD +T ++ L + +++LMVTH + M DR++V + G+I EE
Sbjct: 505 LDPITER----QVLAL-LFEHAEGKTLLMVTHRLRGLERM-DRIIVL--DNGKIIEE 553
>gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 100 bits (250), Expect = 1e-21
Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 24/211 (11%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD-----PPK 86
L +N + +G++ L+G SG+GKSTLL ++ G ++P+ G++ G ++D K
Sbjct: 336 ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK 395
Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDL-------IGLDGFES 139
IS V Q LF T+ EN+ L + +E AL L GLD
Sbjct: 396 QISWVSQNPYLFAG-TIRENILLA---RPDASDEEIIAALDQAGLLEFVPKPDGLDTVIG 451
Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199
+SGG QR+ ARA + SLLL+DEP + LD T + + L +L + +
Sbjct: 452 EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL-AKQKT--- 507
Query: 200 SMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
+L++TH +E+A DR++V + GR+ E
Sbjct: 508 -VLVITHRLEDAADA-DRIVVL--DNGRLVE 534
>gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy..
Length = 237
Score = 99.2 bits (247), Expect = 2e-21
Identities = 64/211 (30%), Positives = 106/211 (50%), Gaps = 19/211 (9%)
Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK--DPP--- 85
++LD ++ + GE+VG++GRSGSGKSTL ++I P +G+VL G + DP
Sbjct: 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLR 75
Query: 86 KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-----GLDGFESA 140
+ + VV Q LF ++ +N+ L +++ + A D I G D
Sbjct: 76 RQVGVVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGE 134
Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200
+SGG QR+ ARA + P +L+ DE SALD + + ++ D+ GR +
Sbjct: 135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI-CAGR----T 189
Query: 201 MLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
++++ H + V DR++V GRI E+
Sbjct: 190 VIIIAHRL-STVKNADRIIVMEK--GRIVEQ 217
>gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 716
Score = 99.3 bits (247), Expect = 2e-21
Identities = 66/229 (28%), Positives = 118/229 (51%), Gaps = 22/229 (9%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
+E +D+ ++ + ++ VL ++F + GE+V L+G SGSGKST+ ++ P+S
Sbjct: 466 IEFEDVSFAYPTRP---DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTS 522
Query: 72 GQVLFKGKKIKDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRAL 126
G++L G I D + I +V Q LF ++ EN+ GL ++ E +
Sbjct: 523 GRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLDNATDEEIEAAAKMA 581
Query: 127 SAIDLI-----GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAE 181
+A + I G + +++SGG QR+ ARA + P +L++DE SALD +E
Sbjct: 582 NAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDA-ESE 640
Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
L + +D ++GR ++L++ H + V D+++V GR+ E
Sbjct: 641 YLVQEALDRLMQGR----TVLVIAHRL-STVRHADQIVVIDK--GRVVE 682
>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely
related to eukaryotic MDR proteins. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 234
Score = 96.8 bits (241), Expect = 9e-21
Identities = 67/213 (31%), Positives = 104/213 (48%), Gaps = 25/213 (11%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP-----K 86
VL ++ ++ +GE V L+G SGSGKSTL+ +I SG++L G ++D +
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76
Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-----GLDGFESAH 141
I +V Q LF TV EN+ G ++ E RA +A + I G D
Sbjct: 77 QIGLVSQDVFLFND-TVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGER 135
Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESM 201
++SGG QR+ ARA + P +L++DE SALD + E L ++ ++ R +
Sbjct: 136 GVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES-ERLVQAALERLMKNR----TT 190
Query: 202 LMVTH---NIEEAVLMCDRVLVFSSNPGRIAEE 231
++ H IE A DR++V G+I E
Sbjct: 191 FVIAHRLSTIENA----DRIVVLED--GKIVER 217
>gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the
ATPase component of a bacterial ABC-type Na+ transport
system called NatAB, which catalyzes ATP-dependent
electrogenic Na+ extrusion without mechanically coupled
to proton or K+ uptake. NatB possess six putative
membrane spanning regions at its C-terminus. In B.
subtilis, NatAB is inducible by agents such as ethanol
and protonophores, which lower the protonmotive force
across the membrane. The closest sequence similarity to
NatA is exhibited by DrrA of the two-component
daunomycin- and doxorubicin-efflux system. Hence, the
functional NatAB is presumably assembled with two copies
of the single ATP-binding protein and the single
intergral membrane protein..
Length = 236
Score = 96.8 bits (241), Expect = 1e-20
Identities = 61/202 (30%), Positives = 100/202 (49%), Gaps = 10/202 (4%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG----KKIKDPPKD 87
L ++F + GEIVG +G +G+GK+T L+I++GL+ P+SG+V G K+ K +
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRR 95
Query: 88 ISVVFQTFALFPW-LTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEIS 146
I VVF W L V+++ L + +KR +L+ L+ ++S
Sbjct: 96 IGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLS 155
Query: 147 GGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTH 206
G R A A + P +L +DEP LDV+ EN+R L + E + L+ +H
Sbjct: 156 LGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTV---LLTSH 212
Query: 207 NIEEAVLMCDRVLVFSSNPGRI 228
+++ + RVLV GR+
Sbjct: 213 YMKDIEALARRVLVIDK--GRL 232
>gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminas, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 204
Score = 95.5 bits (238), Expect = 3e-20
Identities = 61/221 (27%), Positives = 100/221 (45%), Gaps = 34/221 (15%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
+ ++D ++ + + L +N V GE+V ++G GSGKS+LL + G + S
Sbjct: 1 ISVEDASFTWDSGEQETSF-TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS 59
Query: 72 GQVLFKGKKIKDPPKDISVVFQTFALFPWL---TVLENVELGLKAKGIDKEERRKRALSA 128
G V G I+ V Q PW+ T+ EN+ G D EER ++ + A
Sbjct: 60 GSVSVPGS--------IAYVSQE----PWIQNGTIRENILFGKP---FD-EERYEKVIKA 103
Query: 129 IDLI-GLDGFESAHTTEI-------SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180
L L+ TEI SGG QR+ ARA + L+D+P SA+D
Sbjct: 104 CALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVG 163
Query: 181 ENLRTDLI-DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220
++ + I L + + I +VTH + + + D+++V
Sbjct: 164 RHIFENCILGLLLNNKTRI----LVTHQL-QLLPHADQIVV 199
>gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 94.9 bits (236), Expect = 3e-20
Identities = 58/230 (25%), Positives = 101/230 (43%), Gaps = 50/230 (21%)
Query: 10 RLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP 69
++ ++++ ++ + + L+ V+ ++ GE +GL+GR+G+GKSTLL+I+AG + P
Sbjct: 2 SMITLENLSLAYGDRPL------LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP 55
Query: 70 SSGQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAK--------------- 114
SG+V + + + Q L P TVL+ V G
Sbjct: 56 DSGEV------TRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 115 ---------------GIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAF 159
+D RA A+ +G E + +SGG +RV ARA
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD-EDRPVSSLSGGWRRRVALARAL 168
Query: 160 VVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIE 209
+ P LLL+DEP + LD+ + E L L ++++V+H+
Sbjct: 169 LEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-------GTVIVVSHDRY 211
Score = 83.0 bits (205), Expect = 1e-16
Identities = 62/214 (28%), Positives = 106/214 (49%), Gaps = 24/214 (11%)
Query: 9 NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68
+LE +++ + + G L+L ++F + G+ + ++G +G+GKSTLL+++AG +
Sbjct: 319 KLVLEFENVSKGYD-----GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG 373
Query: 69 PSSGQVLFKGKKIKDPPKDISVVFQTFA-LFPWLTVLENVELGLKAKGIDKEERRKRALS 127
P SG V G+ +K I Q L P TVLE + G D++E R L
Sbjct: 374 PLSGTVKV-GETVK-----IGYFDQHRDELDPDKTVLEELSEG--FPDGDEQEVR-AYLG 424
Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187
G D + +SGG R+ A+ + P+LLL+DEP + LD+ + E L L
Sbjct: 425 RFGFTGEDQEKPVGV--LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL 482
Query: 188 IDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
+D EG ++L+V+H+ + R+ +
Sbjct: 483 LDF--EG-----TVLLVSHDRYFLDRVATRIWLV 509
>gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 94.2 bits (234), Expect = 6e-20
Identities = 46/154 (29%), Positives = 82/154 (53%), Gaps = 7/154 (4%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPK- 86
G + ++F +++GE + + G +G+GK+TLLRI+AGL+ P +G+V ++G+ I++ +
Sbjct: 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRES 72
Query: 87 ---DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTT 143
+ + + LT LEN+ + G A+ +GL G E
Sbjct: 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAA---TIWEALAQVGLAGLEDLPVG 129
Query: 144 EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
++S G +RV AR ++ L ++DEPF+ALD
Sbjct: 130 QLSAGQQRRVALARLWLSPAPLWILDEPFTALDK 163
>gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 94.2 bits (234), Expect = 6e-20
Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 19/212 (8%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF------KGKKIKDPP 85
+L +++ V+ GE ++G +G+GK+TLL ++ G PSSG V KG+ I +
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105
Query: 86 KDISVV--FQTFALFPWLTVLENV------ELGLKAKGIDKEERRKRALSAIDLIGLDGF 137
K I +V TV + V +G+ + + E A ++L+G
Sbjct: 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLT-AEDLAAAQWLLELLGAKHL 164
Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197
+S G +RV ARA V P LL++DEP LD++ E L L + +
Sbjct: 165 ADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEE--LAASPG 222
Query: 198 IESMLMVTHNIEEAVLMCDRVLVFSSNPGRIA 229
++L VTH+ EE L+ G +
Sbjct: 223 APALLFVTHHAEEIPPCFTHRLLLK--EGEVV 252
>gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 94.2 bits (234), Expect = 6e-20
Identities = 73/235 (31%), Positives = 121/235 (51%), Gaps = 20/235 (8%)
Query: 11 LLEIQDICQSFSLKKISG-NLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP 69
L + ++ ++F+L + G L VL V+ +V++GE V L G SGSGKSTLLR + P
Sbjct: 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP 63
Query: 70 SSGQVLFKGKK-----IKDPPKD--------ISVVFQTFALFPWLTVLENVELGLKAKGI 116
GQ+L + + + P++ I V Q + P ++ L+ V L A+G+
Sbjct: 64 DEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGV 123
Query: 117 DKEERRKRALSAIDLIGL-DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175
+E R +A + + L + S SGG QRV AR F+V +LL+DEP ++L
Sbjct: 124 PREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL 183
Query: 176 DVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSS-NPGRIA 229
D A N R +++L E + +++ + H+ E + DR+L S+ +P + A
Sbjct: 184 D---ATN-RAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSAFSPRKEA 234
>gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding
protein. In A. tumefaciens cyclic beta-1, 2-glucan must
be transported into the periplasmic space to exert its
action as a virluence factor. This subfamily belongs to
the MRP-like family and is involved in drug, peptide,
and lipid export. The MRP-like family, similar to all
ABC proteins, have a common four-domain core structure
constituted by two membrane-spanning domains each
composed of six transmembrane (TM) helices and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 229
Score = 94.1 bits (234), Expect = 7e-20
Identities = 61/210 (29%), Positives = 104/210 (49%), Gaps = 19/210 (9%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87
VL +NF++ GE V ++G +G+GK+TL+ ++ P GQ+L G I+D +
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRS 77
Query: 88 -ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-----GLDGFESAH 141
I VV Q LF T++EN+ LG ++ + A D I G D +
Sbjct: 78 MIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGEN 136
Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESM 201
+S G Q + ARA + P +L++DE S +D T + ++ L L ++GR +
Sbjct: 137 GGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL-MKGR----TS 191
Query: 202 LMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
+++ H + + D++LV + G+I EE
Sbjct: 192 IIIAHRL-STIKNADKILVL--DDGKIIEE 218
>gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment
(EP) precursor transport, regulation of
lipid-trafficking mechanisms, and pleiotropic drug
resistance (DR). DR is a well-described phenomenon
occurring in fungi and shares several similarities with
processes in bacteria and higher eukaryotes. Compared
to other members of the ABC transporter subfamilies, the
ABCG transporter family is composed of proteins that
have an ATP-binding cassette domain at the N-terminus
and a TM (transmembrane) domain at the C-terminus..
Length = 194
Score = 94.1 bits (234), Expect = 7e-20
Identities = 62/223 (27%), Positives = 93/223 (41%), Gaps = 40/223 (17%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS- 70
L +++ + +L V+ GE+ ++G SG+GKSTLL +AG +
Sbjct: 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63
Query: 71 -SGQVLFKGKKIKD--PPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALS 127
SG+VL G+ + K I V Q L P LTV E + K +G
Sbjct: 64 VSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRG------------ 111
Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187
+SGG +RV A V PSLL +DEP S LD +A + + L
Sbjct: 112 -----------------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLL 154
Query: 188 IDLWIEGRLPIESMLMVTHNI-EEAVLMCDRVLVFSSNPGRIA 229
L GR +++ H E + D++L+ S GR+
Sbjct: 155 RRLADTGR----TIICSIHQPSSEIFELFDKLLLLS--QGRVI 191
>gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC
transporters homologous to the Drosophila white gene,
which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners..
Length = 226
Score = 92.2 bits (229), Expect = 3e-19
Identities = 66/202 (32%), Positives = 98/202 (48%), Gaps = 11/202 (5%)
Query: 9 NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV- 67
R+L D+ K + +L+ V+ +V SG+++ +LG SGSGK+TLL I+G V
Sbjct: 1 QRVLPWWDVGLKA--KNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVE 58
Query: 68 --SPSSGQVLFKGKKIKDP--PKDISVVFQTFALFPWLTVLEN----VELGLKAKGIDKE 119
+SGQ+LF G+ K K ++ V Q L P LTV E L L K D
Sbjct: 59 GGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAI 118
Query: 120 ERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179
+++ + + L ISGG +RV A + P +L++DEP S LD T
Sbjct: 119 RKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFT 178
Query: 180 AENLRTDLIDLWIEGRLPIESM 201
A NL + L L R+ I ++
Sbjct: 179 ALNLVSTLSQLARRNRIVILTI 200
>gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 91.9 bits (228), Expect = 3e-19
Identities = 68/217 (31%), Positives = 110/217 (50%), Gaps = 20/217 (9%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87
L+ ++ ++ G+ V ++G +G+GKSTLL IAG + P+SGQ+L G +
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80
Query: 88 -ISVVFQ--TFALFPWLTVLENVELGL---KAKGIDKEERRKRALSAIDLI-GLD-GFES 139
++ VFQ P LT+ EN+ L K +G+ +R S + + L G E+
Sbjct: 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLEN 140
Query: 140 AHTTEI---SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL 196
+ I SGG Q + A + P +LL+DE +ALD TAE + + E +L
Sbjct: 141 RLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL 200
Query: 197 PIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVL 233
LMVTHN+E+A+ +R+++ S G+I +V
Sbjct: 201 TT---LMVTHNMEDALDYGNRLIMLHS--GKIVLDVT 232
>gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 221
Score = 91.3 bits (227), Expect = 5e-19
Identities = 66/225 (29%), Positives = 103/225 (45%), Gaps = 26/225 (11%)
Query: 19 QSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG 78
++ SL+ VL ++F++ GE VG++GR+GSGKS+LL + LV SSG +L G
Sbjct: 6 KNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDG 65
Query: 79 KKIKD-PPKD----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI- 132
I D IS++ Q LF T+ N L G +E +AL + L
Sbjct: 66 VDISKIGLHDLRSRISIIPQDPVLFSG-TIRSN----LDPFGEYSDEELWQALERVGLKE 120
Query: 133 -------GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRT 185
GLD +S G Q + ARA + +L++DE +++D T
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA---- 176
Query: 186 DLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
LI I ++L + H + + ++ DR+LV GR+ E
Sbjct: 177 -LIQKTIREAFKDCTVLTIAHRL-DTIIDSDRILVLDK--GRVVE 217
>gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC
superfamily [Intracellular trafficking, secretion, and
vesicular transport].
Length = 591
Score = 91.1 bits (226), Expect = 5e-19
Identities = 64/210 (30%), Positives = 109/210 (51%), Gaps = 20/210 (9%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87
VL V+F + GE V ++G +GSGKST+LR++ SG +L G+ IK+ +
Sbjct: 367 VLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQ 425
Query: 88 -ISVVFQTFALFPWLTVLENVELGLKAKGIDK--EERRKRALSAIDLIGLDGFESA---H 141
I VV Q LF T+L N++ G + ++ E ++ L + DG+++
Sbjct: 426 SIGVVPQDSVLFN-DTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGER 484
Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESM 201
+SGG QRV ARAF+ +LL+DE SALD T + ++D+ + GR ++
Sbjct: 485 GLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGR----TV 539
Query: 202 LMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
+M+ H + + + D+++V + G + E
Sbjct: 540 IMIVHRL-DLLKDFDKIIVLDN--GTVKEY 566
>gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
In members of Carb_Monos family the single hydrophobic
gene product forms a homodimer, while the ABC protein
represents a fusion of two nucleotide-binding domains.
However, it is assumed that two copies of the ABC
domains are present in the assembled transporter..
Length = 182
Score = 90.9 bits (226), Expect = 7e-19
Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 38/212 (17%)
Query: 21 FSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKK 80
++ +S V D V+F V +GEIVG+ G G+G++ L + GL P+SG++ GK
Sbjct: 5 LEVRGLSVKGAVRD-VSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKP 63
Query: 81 IKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRAL----SAIDLIGLDG 136
+ + + + G+ E+R++ L S + I L
Sbjct: 64 VT-----------------RRSPRDAIRAGI---AYVPEDRKREGLVLDLSVAENIAL-- 101
Query: 137 FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL 196
++ +SGG Q+V AR P +L++DEP +DV + + +L G+
Sbjct: 102 -----SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGK- 155
Query: 197 PIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228
++L+++ ++E + +CDR+LV GRI
Sbjct: 156 ---AVLLISSELDELLGLCDRILVMYE--GRI 182
>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They
export degradative enzymes by using a type I protein
secretion system and lack an N-terminal signal peptide,
but contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family
of ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA..
Length = 173
Score = 88.7 bits (220), Expect = 3e-18
Identities = 58/208 (27%), Positives = 89/208 (42%), Gaps = 48/208 (23%)
Query: 18 CQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFK 77
++ S + VL V+F++ GE + ++G SGSGKSTL R+I GL+ P+SG+V
Sbjct: 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLD 62
Query: 78 GKKIKDPPKD-----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI 132
G I + + + Q LF ++ EN+
Sbjct: 63 GADISQWDPNELGDHVGYLPQDDELFSG-SIAENI------------------------- 96
Query: 133 GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWI 192
+SGG QR+G ARA P +L++DEP S LDV L + L
Sbjct: 97 ------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA 144
Query: 193 EGRLPIESMLMVTHNIEEAVLMCDRVLV 220
G + +++ H E + DR+LV
Sbjct: 145 AG----ATRIVIAHRP-ETLASADRILV 167
>gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 88.5 bits (219), Expect = 3e-18
Identities = 61/224 (27%), Positives = 123/224 (54%), Gaps = 19/224 (8%)
Query: 11 LLEIQDICQSFSLKKI---SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67
LLE++++ ++F + + + V+F + G+ + ++G +GSGKSTL +++AG++
Sbjct: 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63
Query: 68 SPSSGQVLFKGKKI-----KDPPKDISVVFQ--TFALFPWLTVLENVELGLK-AKGIDKE 119
P+SG++L + K I ++FQ +L P L + + ++ L+ ++ E
Sbjct: 64 EPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPE 123
Query: 120 ERRKRALSAIDLIGL-DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVL 178
+RRK+ + ++GL + + ++ G QRV ARA ++ P +++ DE ++LD+
Sbjct: 124 QRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDM- 182
Query: 179 TAENLRTDLIDLWIE--GRLPIESMLMVTHNIEEAVLMCDRVLV 220
++R+ LI+L +E + I S + VT +I + D+VLV
Sbjct: 183 ---SMRSQLINLMLELQEKQGI-SYIYVTQHIGMIKHISDQVLV 222
>gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 87.6 bits (217), Expect = 6e-18
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 37/243 (15%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87
+L ++F + +GE +G++G SGSGKSTL R++ G+ P+SG V G ++ ++
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410
Query: 88 -ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRK-----RALSAIDLIGLDGFESAH 141
I + Q LF T+ EN+ A+ ++ + K R +LI +
Sbjct: 411 HIGYLPQDVELFDG-TIAENI-----ARFGEEADPEKVIEAARLAGVHELIL--RLPQGY 462
Query: 142 TTEI-------SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194
T I SGG QR+ ARA P L+++DEP S LD L ++ G
Sbjct: 463 DTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARG 522
Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIA-----EEVLISIPHPRNRLSPEFRQ 249
+++++ H A+ D++LV GRIA EEVL + P R +
Sbjct: 523 G----TVVVIAHRP-SALASVDKILVLQD--GRIAAFGPREEVLAKVLRPPPRQAKPGTV 575
Query: 250 IVE 252
+
Sbjct: 576 VAP 578
>gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 86.9 bits (215), Expect = 1e-17
Identities = 60/198 (30%), Positives = 102/198 (51%), Gaps = 10/198 (5%)
Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGK----KIKDPPKDISVV 91
++F + GEIVG LG +G+GKST L+++ GL+ P+SG+V GK + ++ + I +V
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102
Query: 92 FQTFALFPW-LTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGML 150
W L L+++E+ I +E +R +++ L+GF ++S G
Sbjct: 103 MGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQR 162
Query: 151 QRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEE 210
R A A + P +L +DEP LDV N+R L + E + + L+ TH ++
Sbjct: 163 MRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATV---LLTTHIFDD 219
Query: 211 AVLMCDRVLVFSSNPGRI 228
+CDRVL+ G++
Sbjct: 220 IATLCDRVLLIDQ--GQL 235
>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen
Processing; TAP is essential for peptide delivery from
the cytosol into the lumen of the endoplasmic reticulum
(ER), where these peptides are loaded on major
histocompatibility complex (MHC) I molecules. Loaded
MHC I leave the ER and display their antigenic cargo on
the cell surface to cytotoxic T cells. Subsequently,
virus-infected or malignantly transformed cells can be
eliminated. TAP belongs to the large family of
ATP-binding cassette (ABC) transporters, which
translocate a vast variety of solutes across membranes..
Length = 226
Score = 84.2 bits (208), Expect = 6e-17
Identities = 68/210 (32%), Positives = 104/210 (49%), Gaps = 23/210 (10%)
Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP----- 85
LVL V+F + GE+ L+G SGSGKST++ ++ P GQVL GK I
Sbjct: 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87
Query: 86 KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTE- 144
+S+V Q LF ++ +N+ GL++ + + + A I S + TE
Sbjct: 88 SKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFI--SELASGYDTEV 144
Query: 145 ------ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198
+SGG QRV ARA + P +L++DE SALD + + ++ L D W E R
Sbjct: 145 GEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD-WPERR--- 200
Query: 199 ESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228
++L++ H + V D++LV GRI
Sbjct: 201 -TVLVIAHRL-STVERADQILVLDG--GRI 226
>gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 84.2 bits (208), Expect = 6e-17
Identities = 77/265 (29%), Positives = 121/265 (45%), Gaps = 46/265 (17%)
Query: 8 DNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67
D LL + + + + G V+F++ GE++G++G SGSGK+TLL+ I+G +
Sbjct: 3 DKPLLSVSGLSKLY------GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRL 56
Query: 68 SPSSGQVLFKGKKIKDPPKDISVVFQ----TFALFPWLTVLENVELGLK---AKGIDKEE 120
+P +G V ++ + P+D+ + + W V +N GL+ + G + E
Sbjct: 57 TPDAGTVTYRMRD--GQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGE 114
Query: 121 R----------RKRALSA-------IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFP 163
R RA + IDL +D SGGM QR+ AR V P
Sbjct: 115 RLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRT----FSGGMQQRLQIARNLVTRP 170
Query: 164 SLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSS 223
L+ MDEP LDV L L L E L ++++VTH++ A L+ DR++V
Sbjct: 171 RLVFMDEPTGGLDVSVQARLLDLLRGLVRELGL---AVVIVTHDLAVARLLADRLMVMKQ 227
Query: 224 NPGRIAE-----EVLISIPHPRNRL 243
G++ E VL HP +L
Sbjct: 228 --GQVVESGLTDRVLDDPHHPYTQL 250
>gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster
assembly, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 251
Score = 83.7 bits (207), Expect = 1e-16
Identities = 67/251 (26%), Positives = 111/251 (44%), Gaps = 47/251 (18%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VS 68
+LEI+D+ + G +L VN V GE+ ++G +GSGKSTL I G
Sbjct: 3 MLEIKDLHVE-----VEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE 57
Query: 69 PSSGQVLFKGKKIKDPPKD------ISVVFQTFALFPWLTVLENVELGLKAKGIDKE--- 119
+ G++LF G+ I + D I + FQ P +T + + + A+ +
Sbjct: 58 VTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILP 117
Query: 120 ERRKRALSAIDLIGLD----------GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMD 169
E K +L+GLD GF SGG +R + ++ P L ++D
Sbjct: 118 EFIKELKEKAELLGLDEEFLERYVNEGF--------SGGEKKRNEILQLLLLEPKLAILD 169
Query: 170 EPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHN--------IEEAVLMCDRVLVF 221
EP S LD+ + + + L EGR +L++TH ++ ++ D +V
Sbjct: 170 EPDSGLDIDALKIVAEGINALREEGR----GVLIITHYQRLLDYIKPDKVHVLYDGRIVK 225
Query: 222 SSNPGRIAEEV 232
S +P +AEE+
Sbjct: 226 SGDP-ELAEEL 235
>gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 82.9 bits (205), Expect = 2e-16
Identities = 57/218 (26%), Positives = 108/218 (49%), Gaps = 16/218 (7%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
++ I+++ +S+ G +VLD V+ ++ G I ++G +G+GKSTLL +++ L+
Sbjct: 1 MITIENVSKSY------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD 54
Query: 71 SGQVLFKGKKIKDPP-----KDISVVFQTFALFPWLTVLENVELGL--KAKGIDKEERRK 123
SG++ G ++ P K +S++ Q + LTV + V G ++G +E R+
Sbjct: 55 SGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRR 114
Query: 124 RALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL 183
AI+ + L+ + E+SGG QR A +L+DEP + LD+ + +
Sbjct: 115 IINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQI 174
Query: 184 RTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
L L E +++++V H+I A D ++
Sbjct: 175 MKILRRLADELG---KTIVVVLHDINFASCYSDHIVAL 209
>gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of
the bacterial CcmAB transporter. The CCM family is
involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperone
that binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE..
Length = 201
Score = 82.7 bits (204), Expect = 2e-16
Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 10/164 (6%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD 87
+ ++F +++GE + + G +GSGK+TLLRI+AGL P +G+VL G +
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDS 70
Query: 88 ISVVFQTFALFP----WLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTT 143
I+ P L+VLEN+ ++ A+ +GL+GFE
Sbjct: 71 IARGLLYLGHAPGIKTTLSVLENLRFWHADHS------DEQVEEALARVGLNGFEDRPVA 124
Query: 144 EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187
++S G +RV AR + L ++DEP +ALD +
Sbjct: 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168
>gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC
superfamily [Inorganic ion transport and metabolism].
Length = 790
Score = 82.8 bits (204), Expect = 2e-16
Identities = 65/211 (30%), Positives = 99/211 (46%), Gaps = 23/211 (10%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP-----K 86
VL ++F V G+ V L+G SG+GKST++R++ +SG + G+ I++
Sbjct: 553 VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRS 612
Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEI- 145
I VV Q LF T+L N+ + ++ +A D I F + T +
Sbjct: 613 SIGVVPQDTVLFN-DTILYNIRYAKPSASNEEVYAAAKAAQIHDRI--LQFPEGYNTRVG 669
Query: 146 ------SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199
SGG QRV AR + PS++L+DE SALD T ++ L L R I
Sbjct: 670 ERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARL-CANRTTI- 727
Query: 200 SMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
+V H + ++ D +LV S+ GRI E
Sbjct: 728 ---VVAHRL-STIVNADLILVISN--GRIVE 752
>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
protein/mitoxantrone resistance protein, ABC superfamily
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 1381
Score = 80.3 bits (198), Expect = 1e-15
Identities = 62/211 (29%), Positives = 97/211 (45%), Gaps = 34/211 (16%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVV 91
L +NF + G++V ++G GSGKS+LL I G + SG V G ++ V
Sbjct: 536 TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS--------VAYV 587
Query: 92 FQTFALFPWL---TVLENVELGLKAKGIDKEERRKRALSAIDLI-GLDGFESAHTTEI-- 145
Q PW+ TV EN+ G EER + + A L L+ TEI
Sbjct: 588 PQQ----PWIQNGTVRENILFGSPY----DEERYDKVIKACALKKDLEILPFGDLTEIGE 639
Query: 146 -----SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200
SGG QR+ ARA + L+D+P SA+D + + + I G L ++
Sbjct: 640 RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGK----HIFEECIRGLLRGKT 695
Query: 201 MLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
+++VTH + + + D+++V G+I E
Sbjct: 696 VILVTHQL-QFLPHADQIIVLKD--GKIVES 723
Score = 74.9 bits (184), Expect = 4e-14
Identities = 66/226 (29%), Positives = 101/226 (44%), Gaps = 28/226 (12%)
Query: 19 QSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG 78
+ SL+ LVL ++F + GE VG++GR+G+GKS+L+ + LV P+ G++L G
Sbjct: 1142 EDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDG 1201
Query: 79 KKI-----KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI- 132
I D +S++ Q LF TV N L ++ AL L
Sbjct: 1202 VDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFN----LDPFDEYSDDEIWEALERCQLKD 1256
Query: 133 -------GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRT 185
GLD S S G Q + ARA + +L++DE +++D T
Sbjct: 1257 VVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDP------ET 1310
Query: 186 D-LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
D LI I ++L + H + V+ DRVLV + GR+ E
Sbjct: 1311 DALIQKTIREEFKDCTVLTIAHRL-NTVMDSDRVLVLDA--GRVVE 1353
>gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 79.9 bits (197), Expect = 1e-15
Identities = 65/227 (28%), Positives = 101/227 (44%), Gaps = 26/227 (11%)
Query: 9 NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68
+L + + SF G L+ ++F+V GE+ L+G +G+GK+TL+ +I G
Sbjct: 3 PIILYLDGVSVSF------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR 56
Query: 69 PSSGQVLFKGKK--IKDPPKDISVV-----FQTFALFPWLTVLENVELGLKAK------- 114
P G+VLF G K P I+ FQ +F LTV EN+EL L
Sbjct: 57 PQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASL 116
Query: 115 -GIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFS 173
+ E R+R + IGL +S G Q + P LLL+DEP +
Sbjct: 117 FARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVA 176
Query: 174 ALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220
+ AE +T + + G+ S+L+V H++ + D+V V
Sbjct: 177 GMT--DAETEKTAELLKSLAGK---HSILVVEHDMGFVREIADKVTV 218
>gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 78.8 bits (194), Expect = 3e-15
Identities = 60/236 (25%), Positives = 111/236 (47%), Gaps = 22/236 (9%)
Query: 6 IKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAG 65
+ RL + I SF+ +L+ ++F + G+ V ++G SG+GKST+LR++
Sbjct: 255 LWPVRLGAVAFINVSFAY---DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFR 311
Query: 66 LVSPSSGQVLFKGKKIKDPPKD-----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEE 120
+SG + G+ I+D + I +V Q LF T+ N++ G ++
Sbjct: 312 FYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFN-DTIAYNIKYGRPDATAEEVG 370
Query: 121 R--RKRALSAIDLIGLDGFESA---HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175
+ +G+++ ++SGG QRV AR + P +L++DE SAL
Sbjct: 371 AAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSAL 430
Query: 176 DVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
D T + ++ L ++ GR + L++ H + ++ D ++V + GRI E
Sbjct: 431 DTHTEQAIQAALREV-SAGR----TTLVIAHRL-STIIDADEIIVLDN--GRIVER 478
>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity of more than 48%. The high degree of
evolutionary conservation suggests that RLI performs a
central role in archaeal and eukaryotic physiology..
Length = 246
Score = 76.9 bits (189), Expect = 1e-14
Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 14/188 (7%)
Query: 39 NVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALF 98
++S E++G+LG +G GK+T ++++AG++ P G + + + P+ I ++
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEG---- 76
Query: 99 PWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARA 158
V L + D + ++ E+SGG LQRV A
Sbjct: 77 -------TVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAAC 129
Query: 159 FVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRV 218
+ L+DEP + LDV + + +I + E ++ +V H+I + DR+
Sbjct: 130 LSKDADIYLLDEPSAYLDV-EQRLMASKVIRRFAENNE--KTAFVVEHDIIMIDYLADRL 186
Query: 219 LVFSSNPG 226
+VF P
Sbjct: 187 IVFEGEPS 194
>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
(PDR1-15), ABC superfamily [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 1391
Score = 75.3 bits (185), Expect = 4e-14
Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 28/195 (14%)
Query: 9 NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68
N L + K+ + +L ++ + GE+ +LG GSGK+TLL+ +AG +
Sbjct: 107 NILSNPLESILRMLGKRKKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLD 166
Query: 69 P---SSGQVLFKGKKIKD--PPKDISVVFQTFALFPWLTVLENVELGLKAKG----IDKE 119
SSG++ + G +K+ P K ++ + FP LTV E ++ + KG D+
Sbjct: 167 NFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEV 226
Query: 120 ERRKRALSAIDLI----GLDGFESAHTTE----------ISGGMLQRVGFARAFVVFPSL 165
RR++ + D + GLD H + +SGG +RV V S+
Sbjct: 227 SRREKLAAMTDYLLKILGLD-----HCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASI 281
Query: 166 LLMDEPFSALDVLTA 180
L DE LD TA
Sbjct: 282 LFWDEITRGLDSSTA 296
Score = 69.5 bits (170), Expect = 2e-12
Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 14/189 (7%)
Query: 4 IAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRII 63
+++ + D+ + + G +L+ V+ G + L+G SG+GK+TLL ++
Sbjct: 780 LSLTFKDVFYWVDLP--YEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVL 837
Query: 64 AGLVSPS--SGQVLFKGKKIKDP--PKDISVVFQTFALFPWLTVLENVELGL---KAKGI 116
AG + G +L G + V Q P LTV E++ K +
Sbjct: 838 AGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEV 897
Query: 117 DKEERRKRALSAIDLIGLDGFESA----HTTEISGGMLQRVGFARAFVVFP-SLLLMDEP 171
EE+ + I+L+ L + A + +S +R+ V P S+L +DEP
Sbjct: 898 SDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEP 957
Query: 172 FSALDVLTA 180
S LD A
Sbjct: 958 TSGLDSQAA 966
>gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in
cytochrome bd biogenesis. The CydC and CydD proteins
are important for the formation of cytochrome bd
terminal oxidase of E. coli and it has been proposed
that they were necessary for biosynthesis of the
cytochrome bd quinol oxidase and for periplasmic c-type
cytochromes. CydCD were proposed to determine a
heterooligomeric complex important for heme export into
the periplasm or to be involved in the maintenance of
the proper redox state of the periplasmic space. In
Bacillus subtilius, the absence of CydCD does not affect
the presence of halo-cytochrome c in the membrane and
this observation suggests that CydCD proteins are not
involved in the export of heme in this organism..
Length = 178
Score = 74.9 bits (184), Expect = 4e-14
Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 47/205 (22%)
Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD--- 87
VL ++ + GE + LLGRSGSGKSTLL+++ G + P G++ G + D K
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSS 75
Query: 88 -ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEIS 146
ISV+ Q LF T+ N+ S
Sbjct: 76 LISVLNQRPYLFD-TTLRNNL----------------------------------GRRFS 100
Query: 147 GGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTH 206
GG QR+ AR + ++L+DEP LD +T L + + ++ L ++++ +TH
Sbjct: 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV-----LKDKTLIWITH 155
Query: 207 NIEEAVLMCDRVLVFSSNPGRIAEE 231
++ + D++L + G+I +
Sbjct: 156 HL-TGIEHMDKILFLEN--GKIIMQ 177
>gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 72.5 bits (178), Expect = 2e-13
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 40 VSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALFP 99
+ GE++G+LG +G GK+T ++++AG++ P G + K+ P+ IS +
Sbjct: 364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE--EDLKVSYKPQYISPDYD------ 415
Query: 100 WLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAF 159
VE L++ + + L+ E+SGG LQRV A A
Sbjct: 416 -----GTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAAL 470
Query: 160 VVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVL 219
L L+DEP + LDV + +I +IE ++ L+V H+I + DR++
Sbjct: 471 SREADLYLLDEPSAYLDV-EQRIIVAKVIRRFIENNE--KTALVVDHDIYMIDYVSDRLI 527
Query: 220 VFSSNPGR 227
VF PG+
Sbjct: 528 VFEGEPGK 535
Score = 59.1 bits (143), Expect = 3e-09
Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 34/208 (16%)
Query: 40 VSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQV-----------LFKG-------KKI 81
G++VG+LG +G GKST L+I+AG + P+ G+ F+G KK+
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKL 156
Query: 82 KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAH 141
+ Q L P + + EL + K + R + ++ +GL+
Sbjct: 157 YEGELRAVHKPQYVDLIPKVVKGKVGEL------LKKVDERGKFDEVVERLGLENVLDRD 210
Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV---LTAENLRTDLIDLWIEGRLPI 198
+E+SGG LQRV A A + + DEP S LD+ L A + +L +
Sbjct: 211 VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAE-------DG 263
Query: 199 ESMLMVTHNIEEAVLMCDRVLVFSSNPG 226
+ +++V H++ + D V + PG
Sbjct: 264 KYVIVVEHDLAVLDYLSDFVHILYGEPG 291
>gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR)
family of ATP-binding cassette (ABC) transporters. PDR
is a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide-binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 202
Score = 71.8 bits (176), Expect = 3e-13
Identities = 50/168 (29%), Positives = 70/168 (41%), Gaps = 30/168 (17%)
Query: 20 SFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS---SGQVLF 76
SF+ K + +L + V GE+V +LGR GSG STLL+ +A + G + +
Sbjct: 10 SFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHY 69
Query: 77 KGKKIKD----PPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI 132
G K+ P +I V + FP LTV E ++ L+ KG
Sbjct: 70 NGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG----------------- 112
Query: 133 GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180
+ ISGG +RV A A V S+L D LD TA
Sbjct: 113 ------NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTA 154
>gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multiprotein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet..
Length = 200
Score = 70.5 bits (173), Expect = 8e-13
Identities = 65/229 (28%), Positives = 101/229 (44%), Gaps = 52/229 (22%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSP 69
LEI+D+ S K+I L VN + GE+ L+G +GSGKSTL + I G
Sbjct: 1 LEIKDLHVSVGGKEI------LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV 54
Query: 70 SSGQVLFKGKKIKDPPKD------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRK 123
+ G++LFKG+ I D P + I + FQ P + + +
Sbjct: 55 TEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFL---------------- 98
Query: 124 RALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL 183
R ++ +GF SGG +R + ++ P L ++DEP S LD+ A L
Sbjct: 99 RYVN-------EGF--------SGGEKKRNEILQLLLLEPDLAILDEPDSGLDI-DALRL 142
Query: 184 RTDLIDLWIEGRLPIESMLMVTHNIEEAVLM-CDRVLVFSSNPGRIAEE 231
++I+ E +S+L++TH + DRV V GRI +
Sbjct: 143 VAEVINKLRE---EGKSVLIITHYQRLLDYIKPDRVHVLYD--GRIVKS 186
>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 69.5 bits (170), Expect = 2e-12
Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 26/190 (13%)
Query: 25 KISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDP 84
+ +L ++NF V GE + + G SG+GK++LLR +AGL SG++
Sbjct: 401 RTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISM-------- 452
Query: 85 PKDISVVF--QTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGF----- 137
P D +++F Q P T+ E + A E ++ + +GL
Sbjct: 453 PADSALLFLPQR-PYLPQGTLREALCYPNAAPDFSDAE----LVAVLHKVGLGDLAERLD 507
Query: 138 -ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL 196
E +SGG QR+ FAR + P + +DE SALD T + L L + L
Sbjct: 508 EEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLL-----KEEL 562
Query: 197 PIESMLMVTH 206
P +++ V H
Sbjct: 563 PDATVISVGH 572
>gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily)
[General function prediction only].
Length = 614
Score = 69.2 bits (169), Expect = 2e-12
Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 29/200 (14%)
Query: 27 SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPK 86
S N ++ K+NF + V L+G +G+GKSTLL++I G + P+ G
Sbjct: 400 SDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIG-------------- 445
Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGID------KEERRKRALSAIDLIGLDGFESA 140
V + P +L L ++ +E+ + +I +G G
Sbjct: 446 --MVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSI--LGRFGLTGD 501
Query: 141 HTT----EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL 196
++S G +RV FAR V P LLL+DEP + LD+ T + L + I+ + G +
Sbjct: 502 AQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDAL-AEAINEFPGGVV 560
Query: 197 PIESMLMVTHNIEEAVLMCD 216
+ + + E + +C+
Sbjct: 561 LVSHDFRLISQVAEEIWVCE 580
Score = 61.9 bits (150), Expect = 3e-10
Identities = 50/198 (25%), Positives = 72/198 (36%), Gaps = 36/198 (18%)
Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81
SL + ++ V ++ G GL+G +GSGKST LR IAG P + F
Sbjct: 80 SLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSR 139
Query: 82 KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDL------IGLD 135
+ P + V T E L A+ + + K +L + D
Sbjct: 140 EIEPSEKQAVQAVVME----TDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDND 195
Query: 136 GFESAH-----------------TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVL 178
FE+ ++SGG R ARA P LLL+DEP + LD+
Sbjct: 196 TFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLE 255
Query: 179 TAENLRTDLIDLWIEGRL 196
W+E L
Sbjct: 256 AIV---------WLEEYL 264
>gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits, or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 282
Score = 66.9 bits (163), Expect = 1e-11
Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 21/160 (13%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVV 91
VL +N + GE++ + G +GSGK++LL +I G + PS G++ G+ IS
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR--------ISFS 103
Query: 92 FQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDL-IGLDGFESAHTT------- 143
Q + P T+ EN+ G+ E R K + A L + F T
Sbjct: 104 SQFSWIMPG-TIKENIIFGVSY----DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGI 158
Query: 144 EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL 183
+SGG R+ ARA L L+D PF LDV T + +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEI 198
>gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like
(PDR) family of ATP-binding cassette (ABC) transporters.
PDR is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 192
Score = 64.8 bits (158), Expect = 5e-11
Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 32/167 (19%)
Query: 20 SFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS--SGQVLFK 77
++++ G +L+ ++ V G + L+G SG+GK+TLL ++AG + +G++L
Sbjct: 10 NYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILIN 69
Query: 78 GKKIKDP-PKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDG 136
G+ + + V Q P LTV E + +G+ E+R+
Sbjct: 70 GRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQRK-------------- 115
Query: 137 FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL 183
R+ PS+L +DEP S LD A N+
Sbjct: 116 ---------------RLTIGVELAAKPSILFLDEPTSGLDSQAAYNI 147
>gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1. The sulfonylurea receptor
SUR is an ATP transporter of the ABCC/MRP family with
tandem ATPase binding domains. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity..
Length = 218
Score = 63.2 bits (153), Expect = 1e-10
Identities = 52/198 (26%), Positives = 95/198 (47%), Gaps = 24/198 (12%)
Query: 29 NLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDI 88
L L +N + +G++ ++G+ G GKS+LL I G + G+V + K +P +
Sbjct: 13 GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEA 72
Query: 89 SVVFQTFALF-----PWL---TVLENVELGLKAKGIDKEERRKRALSAIDL-IGLDGFES 139
+ +++ PWL TV EN+ G ++R K A L +D
Sbjct: 73 TRSRNRYSVAYAAQKPWLLNATVEENITFGSPFN----KQRYKAVTDACSLQPDIDLLPF 128
Query: 140 AHTTEI-------SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL-RTDLIDLW 191
TEI SGG QR+ ARA +++ +D+PFSALD+ +++L + ++
Sbjct: 129 GDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL 188
Query: 192 IEGRLPIESMLMVTHNIE 209
+ + ++++VTH ++
Sbjct: 189 QDDK---RTLVLVTHKLQ 203
>gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 61.9 bits (150), Expect = 3e-10
Identities = 64/258 (24%), Positives = 123/258 (47%), Gaps = 39/258 (15%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
LL+I+++ F K G + +D+V+ ++ GEI GL+G SGSGKS + + I G V+
Sbjct: 3 LLDIRNLTIEF--KTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICG-VNKD 59
Query: 71 SGQV--------------LFKGKKIKDPPKDISVVFQ--TFALFPWLTV----LENVELG 110
+ +V L ++ K ++S++FQ L P V ++N+
Sbjct: 60 NWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIP-A 118
Query: 111 LKAKGIDKEE---RRKRALSAIDLIGLDGFE---SAHTTEISGGMLQRVGFARAFVVFPS 164
KG + R++RA+ + +G+ + ++ E++ G Q+V A A P
Sbjct: 119 WTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPR 178
Query: 165 LLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSN 224
LL+ DEP ++++ T + L L + ++L+++H+++ D++ V
Sbjct: 179 LLIADEPTNSMEPTTQAQIFRLLSRL---NQNSNTTILLISHDLQMISQWADKINVLYC- 234
Query: 225 PGRIAE----EVLISIPH 238
G+ E E L+++PH
Sbjct: 235 -GQTVESAPSEELVTMPH 251
>gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 61.9 bits (150), Expect = 3e-10
Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 34/211 (16%)
Query: 13 EIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSG 72
E QDI +SF +++ VL +N + G++V ++G+SG+GK+TLLR+I G
Sbjct: 379 EFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGE 438
Query: 73 QVLFKGKKIKDPPKDISVVFQTFALFPWL---TVLE-----------NVELGLKAKGIDK 118
+ + PK+ P T+LE VE+ L G+
Sbjct: 439 EKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEI-LNRAGLSD 497
Query: 119 EERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVL 178
+R S E+S G +R A+ P++LL+DE + LD L
Sbjct: 498 AVLYRRKFS----------------ELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDEL 541
Query: 179 TAENLRTDLIDLWIEGRLPIESMLMVTHNIE 209
TA + + +L E + + ++VTH E
Sbjct: 542 TAVRVARKISELAREAGITL---IVVTHRPE 569
>gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (mulrtidrug
resisitance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminas,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate..
Length = 207
Score = 61.1 bits (148), Expect = 6e-10
Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 28/204 (13%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP-----K 86
VL V+F V +GE +G++GR+G+GKSTL+ + + G++ G I P
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82
Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEIS 146
++++ Q LF + L +E AL S +S
Sbjct: 83 SLTIIPQDPTLF-----SGTIRSNLDPFDEYSDEEIYGALRV----------SEGGLNLS 127
Query: 147 GGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTH 206
G Q + ARA + P +L++DE +++D T LI I ++L + H
Sbjct: 128 QGQRQLLCLARALLKRPRVLVLDEATASIDYATDA-----LIQKTIREEFTNSTILTIAH 182
Query: 207 NIEEAVLMCDRVLVFSSNPGRIAE 230
+ ++ D++LV + G + E
Sbjct: 183 RL-RTIIDYDKILVMDA--GEVKE 203
>gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 60.4 bits (146), Expect = 9e-10
Identities = 58/225 (25%), Positives = 100/225 (44%), Gaps = 34/225 (15%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
L+++ D+ +S L +SG V +GEI+ L+G +G+GKSTLL +AG+
Sbjct: 3 LMQLNDVAESTRLGPLSGE----------VRAGEILHLVGPNGAGKSTLLARMAGMT-SG 51
Query: 71 SGQVLFKGKKIK-----DPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA 125
SG + F G+ ++ + + + + Q + V + L K R
Sbjct: 52 SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDK------TRTEL 105
Query: 126 LSAI-DLIGLDGFESAHTTEISGGMLQRVGFARAFV-VFP------SLLLMDEPFSALDV 177
L+ + + LD T ++SGG QRV A + + P LLL+DEP ++LDV
Sbjct: 106 LNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDV 165
Query: 178 LTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFS 222
L L L +G +++M +H++ + R +
Sbjct: 166 AQQSALDRLLSALCQQGL----AIVMSSHDLNHTLRHAHRAWLLK 206
>gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette
transporter (Pat) is involved in the import of very
long-chain fatty acids (VLCFA) into the peroxisome. The
peroxisomal membrane forms a permeability barrier for a
wide variety of metabolites required for and formed
during fatty acid beta-oxidation. To communicate with
the cytoplasm and mitochondria, peroxisomes need
dedicated proteins to transport such hydrophilic
molecules across their membranes. X-linked
adrenoleukodystrophy (X-ALD) is caused by mutations in
the ALD gene, which encodes ALDP (adrenoleukodystrophy
protein ), a peroxisomal integral membrane protein that
is a member of the ATP-binding cassette (ABC)
transporter protein family. The disease is
characterized by a striking and unpredictable variation
in phenotypic expression. Phenotypes include the
rapidly progressive childhood cerebral form (CCALD), the
milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic)..
Length = 166
Score = 59.8 bits (145), Expect = 2e-09
Identities = 40/169 (23%), Positives = 63/169 (37%), Gaps = 54/169 (31%)
Query: 17 ICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--------VS 68
++ SL G +L+ ++F + G+ + + G SG+GKS+L R +AGL
Sbjct: 2 ELENLSLATPDGRVLL-KDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 69 PSSGQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSA 128
P +LF ++ P + ++PW VL
Sbjct: 61 PEGEDLLFLPQR----PYLPLGTLREQLIYPWDDVL------------------------ 92
Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
SGG QR+ FAR + P + +DE SALD
Sbjct: 93 -----------------SGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124
>gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI s are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLIs have an N-terminal
Fe-S domain and two nucleotide binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 255
Score = 59.5 bits (144), Expect = 2e-09
Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 36/207 (17%)
Query: 42 SGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP--KDISVVFQTFALFP 99
G+++GL+G +G GKST L+I+AG + P+ G K DPP +I F+ L
Sbjct: 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLG-------KFDDPPDWDEILDEFRGSELQN 77
Query: 100 WLTVLENVELGL------------KAKG-----IDKEERRKRALSAIDLIGLDGFESAHT 142
+ T L ++ + KG + K++ R + +D + L +
Sbjct: 78 YFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNI 137
Query: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV---LTAENLRTDLIDLWIEGRLPIE 199
++SGG LQRV A A DEP S LD+ L A L +L +
Sbjct: 138 DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE-------DDN 190
Query: 200 SMLMVTHNIEEAVLMCDRVLVFSSNPG 226
+L+V H++ + D + PG
Sbjct: 191 YVLVVEHDLAVLDYLSDYIHCLYGEPG 217
>gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC
superfamily (involved in peroxisome organization and
biogenesis) [Lipid transport and metabolism, General
function prediction only].
Length = 659
Score = 59.5 bits (144), Expect = 2e-09
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 17/163 (10%)
Query: 27 SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPK 86
+G+LL+ + ++ V SG+ + + G SG GK++LLR++ GL + G++ PK
Sbjct: 446 NGDLLI-ENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDG---GPK 501
Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKE----ERRKRALSAIDLIGL-DGFESAH 141
D+ + Q T+ + V LKA+ +D + E R L + L L +
Sbjct: 502 DLFFLPQR-PYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLD 560
Query: 142 TT-------EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
+S G QR+ FAR F P ++DE SA+
Sbjct: 561 QQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTE 603
>gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 57.6 bits (139), Expect = 7e-09
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD----- 87
+ +N + GE+V L+G +GSGKSTL ++ GL P SG++L GK + +
Sbjct: 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKL 398
Query: 88 ISVVFQTFALFPWLTVLEN 106
S VF + LF L E
Sbjct: 399 FSAVFSDYHLFDQLLGPEG 417
>gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA
processing and modification].
Length = 592
Score = 57.2 bits (138), Expect = 8e-09
Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 26/154 (16%)
Query: 43 GEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP--KDISVVFQTFALFPW 100
G+++GL+G +G GKST L+I+AG P+ G + +PP ++I F+ L +
Sbjct: 100 GQVLGLVGTNGIGKSTALKILAGKQKPNLG-------RYDNPPDWQEILTYFRGSELQNY 152
Query: 101 LT-VLE-NVELGLK----------AKG-----IDKEERRKRALSAIDLIGLDGFESAHTT 143
T +LE N++ +K KG +D+++ R D + L+
Sbjct: 153 FTKILEDNLKAIIKPQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVE 212
Query: 144 EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
++SGG LQR A V + + DEP S LDV
Sbjct: 213 QLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDV 246
Score = 43.7 bits (103), Expect = 9e-05
Identities = 49/196 (25%), Positives = 78/196 (39%), Gaps = 33/196 (16%)
Query: 41 SSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQ------VLFKGKKIKDPPKDISVVFQT 94
S EI+ +LG +G+GK+T +R++AG + P G V +K +KI PK V Q
Sbjct: 365 SDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKIS--PKREGTVRQL 422
Query: 95 FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVG 154
+ + L ++I +SGG LQRV
Sbjct: 423 LHTKIR---DAYMHPQFVNDV-------MKPLQIENIID------QEVQGLSGGELQRVA 466
Query: 155 FARAFVVFPSLLLMDEPFSALDV---LTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEA 211
A + L+DEP + LD + A + I + + ++ +V H+ A
Sbjct: 467 LALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFI---LHAK---KTAFVVEHDFIMA 520
Query: 212 VLMCDRVLVFSSNPGR 227
+ DRV+VF P
Sbjct: 521 TYLADRVIVFEGQPSV 536
>gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters
with duplicated ATPase domains/Translation elongation
factor EF-3b [Amino acid transport and metabolism,
Translation, ribosomal structure and biogenesis].
Length = 582
Score = 57.3 bits (138), Expect = 9e-09
Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 22/211 (10%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
L I + + + ++ + S + +G +G GKSTLL+I+ G ++P+
Sbjct: 362 NLRISYV----AFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPT 417
Query: 71 SGQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAID 130
G V + P I Q F V + G +EE R+ +
Sbjct: 418 RGIV------GRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRR----HLG 467
Query: 131 LIGLDGFESAHT-TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLID 189
GL G + + +SGG RV FA P LL++DEP + LD + L L +
Sbjct: 468 SFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKN 527
Query: 190 LWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220
G +++V+H+ E +C + V
Sbjct: 528 F--NG-----GVVLVSHDEEFISSLCKELWV 551
Score = 56.1 bits (135), Expect = 2e-08
Identities = 55/191 (28%), Positives = 77/191 (40%), Gaps = 38/191 (19%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA-----GLVSPSSGQVLFKGKKIK 82
G ++L+K N +S G GL+GR+G GKSTLLR IA G +
Sbjct: 91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQS 150
Query: 83 DPPKDISV---VFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFES 139
D + + L LT+ E + L G E + +
Sbjct: 151 VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQ---------------- 194
Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL--- 196
T +SGG R+ ARA P LLL+DEP + LDV+ W+E L
Sbjct: 195 -PTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAV---------AWLENYLQTW 244
Query: 197 PIESMLMVTHN 207
I S L+V+H+
Sbjct: 245 KITS-LIVSHD 254
>gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2. The sulfonylurea receptor
SUR is an ATP binding cassette (ABC) protein of the
ABCC/MRP family. Unlike other ABC proteins, it has no
intrinsic transport function, neither active nor
passive, but associates with the potassium channel
proteins Kir6.1 or Kir6.2 to form the ATP-sensitive
potassium (K(ATP)) channel. Within the channel complex,
SUR serves as a regulatory subunit that fine-tunes the
gating of Kir6.x in response to alterations in cellular
metabolism. It constitutes a major pharmaceutical
target as it binds numerous drugs, K(ATP) channel
openers and blockers, capable of up- or down-regulating
channel activity..
Length = 257
Score = 56.6 bits (136), Expect = 1e-08
Identities = 61/227 (26%), Positives = 99/227 (43%), Gaps = 32/227 (14%)
Query: 12 LEIQDICQSF--SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP 69
++I D+C + +LK VL V + G+ VG+ GR+GSGKS+L +V
Sbjct: 20 IKIHDLCVRYENNLKP------VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI 73
Query: 70 SSGQVLFKGKKIKDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKR 124
G+++ G I P +S++ Q LF ++ L + ++R
Sbjct: 74 FDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-----GSIRFNLDPECKCTDDRLWE 128
Query: 125 ALSAIDLI--------GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176
AL L GLD + S G Q ARAFV S+L+MDE +++D
Sbjct: 129 ALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASID 188
Query: 177 VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSS 223
+ T EN+ ++ R +++ + H + +L D VLV S
Sbjct: 189 MAT-ENILQKVVMTAFADR----TVVTIAHRV-STILDADLVLVLSR 229
>gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 56.2 bits (136), Expect = 2e-08
Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 27/186 (14%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
+LEI++ L +L +N +++ GEI ++G +GSGKSTL ++IAG P+
Sbjct: 7 ILEIKN------LHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG--HPA 58
Query: 71 ----SGQVLFKGKKIKD-PPKDIS-----VVFQTFALFPWLTVLENVELGLKAKGIDKEE 120
G +LFKG+ I D P++ + + FQ P ++ + + L +K +
Sbjct: 59 YKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGL 118
Query: 121 RRKRALS-------AIDLIGLDG-FESAHTTE-ISGGMLQRVGFARAFVVFPSLLLMDEP 171
L + L+G+D F S + E SGG +R + ++ L ++DE
Sbjct: 119 PELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDET 178
Query: 172 FSALDV 177
S LD+
Sbjct: 179 DSGLDI 184
>gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 275
Score = 56.2 bits (135), Expect = 2e-08
Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 27/224 (12%)
Query: 15 QDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQV 74
Q + + K G VL+ ++F++S G+ VGLLGR+GSGKSTLL L++ + G +
Sbjct: 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDI 60
Query: 75 LFKGKKIKDPP-----KDISVVFQTFALFPWLTVLENV---------ELGLKAKGIDKEE 120
G P K V+ Q +F T +N+ E+ A+ + +
Sbjct: 61 QIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 121 RRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180
++ +D + +DG +S G Q + AR+ + +LL+DEP + LD +T
Sbjct: 120 VIEQFPGQLDFVLVDG-----GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITY 174
Query: 181 ENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSN 224
+ +R L + + ++++ H I EA+L C R LV N
Sbjct: 175 QVIRKTLKQAFADC-----TVILSEHRI-EAMLECQRFLVIEEN 212
>gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA
ternary complex to the ribosomal A site by facilitated
release of the deacylated tRNA from the E site. The
reaction requires ATP hydrolysis. EF-3 contains two
ATP nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions..
Length = 144
Score = 55.5 bits (134), Expect = 3e-08
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQV 74
L K G L+L ++ ++ G+ +GL+GR+G+GKSTLL++IAG + P G V
Sbjct: 6 LSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Score = 42.4 bits (100), Expect = 2e-04
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 135 DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194
+ + ++SGG R+ A+ + P+LLL+DEP + LD+ + E L L + G
Sbjct: 61 STVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PG 118
Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSN 224
++++V+H+ + +++
Sbjct: 119 -----TVILVSHDRYFLDQVATKIIELEDG 143
>gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC
superfamily) [Translation, ribosomal structure and
biogenesis].
Length = 807
Score = 52.8 bits (126), Expect = 2e-07
Identities = 57/176 (32%), Positives = 79/176 (44%), Gaps = 32/176 (18%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA--GLVSPSSGQVLFKGKKIK-DP 84
G LL + + G GL+G +G GK+TLL+ IA L P + VL +++ D
Sbjct: 276 GKLL-FVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADS 334
Query: 85 PKDISVVFQT----FALFPW------------LTV---LENVELGLKAKGIDKEERRKRA 125
I V + AL T L+ V L+A G D E R R
Sbjct: 335 TSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARR 394
Query: 126 LSAIDLIGLDGF----ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
+ L GL GF + TT+ SGG RV ARA + P+LL++DEP + LD+
Sbjct: 395 I----LAGL-GFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDL 445
Score = 48.9 bits (116), Expect = 3e-06
Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 20/154 (12%)
Query: 35 KVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQT 94
K++F + + ++G +G GKSTLL+++ G + P+ G+ L K +++ I Q
Sbjct: 605 KLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGE-LRKNHRLR-----IGWFDQH 658
Query: 95 FALFPWLTVLEN-VELGLKAKGIDKEERRKRALSAIDLIGLDGFES-AHTTEI---SGGM 149
L E VE + + +E RK+ +G G S AHT +I SGG
Sbjct: 659 AN--EALNGEETPVEYLQRKFNLPYQEARKQ-------LGTFGLASHAHTIKIKDLSGGQ 709
Query: 150 LQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL 183
RV A + P +L++DEP + LD+ + + L
Sbjct: 710 KARVALAELALGGPDVLILDEPTNNLDIESIDAL 743
>gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor
(RLI) is a key enzyme in ribosomal biogenesis, formation
of translation preinitiation complexes, and assembly of
HIV capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 177
Score = 49.6 bits (118), Expect = 1e-06
Identities = 44/187 (23%), Positives = 70/187 (37%), Gaps = 58/187 (31%)
Query: 40 VSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALFP 99
V GE++G++G +G+GK+T ++I+A GQ++ G + Q L
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILA-------GQLIPNGDNDEWDGITPVYKPQYIDL-- 72
Query: 100 WLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAF 159
SGG LQRV A A
Sbjct: 73 ----------------------------------------------SGGELQRVAIAAAL 86
Query: 160 VVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVL 219
+ + L DEP + LD+ N + L EG+ ++ L+V H++ + DR+
Sbjct: 87 LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGK---KTALVVEHDLAVLDYLSDRIH 143
Query: 220 VFSSNPG 226
VF PG
Sbjct: 144 VFEGEPG 150
>gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA
transporter, ABC superfamily [Lipid transport and
metabolism].
Length = 728
Score = 47.7 bits (113), Expect = 7e-06
Identities = 41/174 (23%), Positives = 81/174 (46%), Gaps = 24/174 (13%)
Query: 17 ICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF 76
I ++ + +G++LV K+ F + G + + G +G GKS+L RI+ GL ++
Sbjct: 483 ILENIPVITPAGDVLV-PKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP------VY 535
Query: 77 KGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR----KRALSAIDLI 132
G P +I + Q P+++ + + ++ +R+ + + +D++
Sbjct: 536 NGLLSIPRPNNIFYIPQR----PYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIV 591
Query: 133 GLD-------GFESAH--TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
L+ G+++ +SGG QR+G AR F P L+DE SA+ +
Sbjct: 592 HLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSI 645
>gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase
component/CCR4 associated factor [General function
prediction only, Transcription].
Length = 291
Score = 38.1 bits (88), Expect = 0.006
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 26/172 (15%)
Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQT- 94
N ++ +G L+G +G+GK+TLL+I++G G V G + D S+
Sbjct: 33 FNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLG---RSAFHDTSLESSGD 89
Query: 95 -------------FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAH 141
A L + E + G D ERR++ ID++ +D H
Sbjct: 90 LSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREK---LIDILDIDLRWRMH 146
Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIE 193
++S G +RV + +LL+DE LDVL R DL++ E
Sbjct: 147 --KVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLA----RADLLEFLKE 192
>gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide
excision repair in eubacteria is a process that repairs
DNA damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins, and UvrB having one ATP binding
site that is structurally related to that of helicases..
Length = 176
Score = 36.8 bits (85), Expect = 0.013
Identities = 43/206 (20%), Positives = 73/206 (35%), Gaps = 44/206 (21%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVF 92
L ++ ++ +V + G SGSGKSTL+ +
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV------------NEGLYASGKARLISFLPKFS 58
Query: 93 QTFALF-PWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQ 151
+ +F L L +V LG G + LS +SGG LQ
Sbjct: 59 RNKLIFIDQLQFLIDVGLGYLTLG--------QKLST----------------LSGGELQ 94
Query: 152 RVGFARAFVV--FPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIE 209
RV A +L ++DEP + L L + L G +++++ HN
Sbjct: 95 RVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG----NTVILIEHN-L 149
Query: 210 EAVLMCDRVLVFSSNPGRIAEEVLIS 235
+ + D ++ F G+ +V+ S
Sbjct: 150 DVLSSADWIIDFGPGSGKSGGKVVFS 175
>gnl|CDD|147726 pfam05729, NACHT, NACHT domain. This NTPase domain is found in
apoptosis proteins as well as those involved in MHC
transcription activation. This family is closely related
to pfam00931.
Length = 165
Score = 34.2 bits (79), Expect = 0.064
Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 39/159 (24%)
Query: 48 LLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENV 107
L G +GSGK+TLL+ +A + +GK P+D VF +L
Sbjct: 5 LQGEAGSGKTTLLQKLA--------LLWAQGK----LPQDFDFVF-------FLPC---- 41
Query: 108 ELGLKAKGIDKEERRKRALSAIDLIGLDGFES-AHTTEISGGMLQRVGFARAFVVFPSLL 166
+E R S DL+ E A +E+ +L+ R ++ L
Sbjct: 42 ----------RELSRSGEASLADLLFSQWPEPAAPVSEVWAVILEL--PERVLLILDGL- 88
Query: 167 LMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVT 205
DE S L L L+ + +L + L++T
Sbjct: 89 --DELASDLGQLDGPLPVLTLLSSLLRKKLLPGASLLLT 125
>gnl|CDD|39383 KOG4181, KOG4181, KOG4181, Uncharacterized conserved protein
[Function unknown].
Length = 491
Score = 32.0 bits (72), Expect = 0.32
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAG 65
L+ +F V +G+LG GSGKSTLL ++A
Sbjct: 181 LLHKTTDFTV-----IGVLGGQGSGKSTLLSLLAA 210
>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to
the ATP-binding cassette of ABC transporters, but are
not associated with membrane-spanning domains. The
conserved ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence..
Length = 204
Score = 31.7 bits (72), Expect = 0.37
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 152 RVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL--PIESMLMVTHNIE 209
R+ A F +L +DEP + LD EN+ L ++ IE R ++++TH+ E
Sbjct: 129 RLALAETFGSNCGILALDEPTTNLD---EENIEESLAEI-IEERKSQKNFQLIVITHDEE 184
>gnl|CDD|30199 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in
the Benson-Calvin cycle in chloroplasts or
photosynthetic prokaryotes. This enzyme catalyzes the
phosphorylation of D-ribulose 5-phosphate to form
D-ribulose 1, 5-biphosphate, using ATP and NADPH
produced by the primary reactions of photosynthesis..
Length = 273
Score = 31.8 bits (72), Expect = 0.43
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 45 IVGLLGRSGSGKSTLLRIIAGLVSP 69
I+G+ G SG GKST LR + L
Sbjct: 1 IIGVAGDSGCGKSTFLRRLTSLFGS 25
>gnl|CDD|33644 COG3854, SpoIIIAA, ncharacterized protein conserved in bacteria
[Function unknown].
Length = 308
Score = 31.1 bits (70), Expect = 0.58
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 48 LLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDIS 89
++G GK+TLLR IA L+S Q L K I D +I+
Sbjct: 142 IIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIA 183
>gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 30.5 bits (69), Expect = 1.0
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDI 88
L ++ + G + G SGSGKSTL I LV P+ + L K+ P K I
Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTL--INDTLV-PALARHLNGTKEEPGPYKKI 669
>gnl|CDD|29988 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3'
helicases. Helicases couple NTP hydrolysis to the
unwinding of nucleic acid duplexes into their component
strands..
Length = 271
Score = 29.9 bits (67), Expect = 1.4
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLR-IIAGLVSPSSGQVLFKGKKIKDPPKDISV 90
VL+K+ + GE++ L +G GK+T LR L++ +V +++P +
Sbjct: 19 VLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGT--ISLEEPVVRTAR 76
Query: 91 VFQT 94
Sbjct: 77 RLLG 80
>gnl|CDD|31356 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 29.9 bits (67), Expect = 1.5
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 42 SGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQV---LFKGK 79
+G+I LLG+SG GKSTL+ + ++ +G++ L +G+
Sbjct: 163 AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGR 203
>gnl|CDD|33731 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 29.6 bits (66), Expect = 1.6
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 23 LKKIS-GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP 69
L+KIS N ++ E ++G +GSGK+T+L I ++
Sbjct: 3 LRKISLNNFRCFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALNK 50
>gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis)
represents a protein family whose members are broadly
conserved in bacteria and have been shown to be
essential to the growth of E. coli and B. subtilis.
Proteins of the YjeQ family contain all sequence motifs
typical of the vast class of P-loop-containing GTPases,
but show a circular permutation, with a G4-G1-G3 pattern
of motifs as opposed to the regular G1-G3-G4 pattern
seen in most GTPases. All YjeQ family proteins display a
unique domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain. This domain architecture suggests a role for
YjeQ as a regulator of translation..
Length = 287
Score = 29.4 bits (66), Expect = 1.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 42 SGEIVGLLGRSGSGKSTLLRIIAG 65
G+ L+G+SG GKSTL+ +
Sbjct: 160 KGKTSVLVGQSGVGKSTLINALLP 183
>gnl|CDD|39108 KOG3905, KOG3905, KOG3905, Dynein light intermediate chain [Cell
motility].
Length = 473
Score = 29.6 bits (66), Expect = 1.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 37 NFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVL 75
+ SG+ V +LG +GSGK++L+ + G + G L
Sbjct: 46 RSKLPSGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGL 84
>gnl|CDD|35954 KOG0735, KOG0735, KOG0735, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 952
Score = 29.2 bits (65), Expect = 2.1
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 48 LLGRSGSGKSTLLRIIAGLVS-PSSGQVLF------KGKKIKDPPKDISVVFQTFALF-- 98
L G GSGK+ L++ + S V G ++ K ++ VF + AL+
Sbjct: 436 LNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVF-SEALWYA 494
Query: 99 PWLTVLENVEL 109
P + VL++++
Sbjct: 495 PSIIVLDDLDC 505
>gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 29.1 bits (66), Expect = 2.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 42 SGEIVGLLGRSGSGKSTLLRIIAG 65
G+ L G+SG GKSTLL +
Sbjct: 34 KGKTSVLAGQSGVGKSTLLNALLP 57
>gnl|CDD|33956 COG4231, COG4231, Indolepyruvate ferredoxin oxidoreductase, alpha
and beta subunits [Energy production and conversion].
Length = 640
Score = 29.1 bits (65), Expect = 2.5
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 221 FSSNPGRIAEEVLISIPHPRNRLSPEFRQIVEKIYALMTKKEEKRLNPLENAPGSGIGI 279
F +PGR + P N L R+++EK A LN +E + + +GI
Sbjct: 201 FIKDPGRY-------VRVPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGI 252
>gnl|CDD|48021 cd03457, intradiol_dioxygenase_like, Intradiol dioxygenase
supgroup. Intradiol dioxygenases catalyze the critical
ring-cleavage step in the conversion of catecholate
derivatives to citric acid cycle intermediates. They
break the catechol C1-C2 bond and utilize Fe3+, as
opposed to the extradiol-cleaving enzymes which break
the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The
family contains catechol 1,2-dioxygenases and
protocatechuate 3,4-dioxygenases. The specific function
of this subgroup is unknown..
Length = 188
Score = 29.1 bits (65), Expect = 2.9
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 292 LIEAVMA-PPYNGKADLPDLANSLQLEADRLFHIGESLQLLQLVNLSGGDIT 342
LIE V A PPYN D +F G + +L V L GG ++
Sbjct: 135 LIEEVYATPPYNSNT-----NARTSNADDGIFSDGGAAGMLPTVELLGGSVS 181
>gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 28.9 bits (64), Expect = 3.0
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 18 CQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL 66
S S +L +L+++ +N+ + E L+G +G+GK+T+++ +A
Sbjct: 439 LSGNSFAFTSCSLWLLEQLLWNIQNNEPTLLVGETGTGKTTMIQYLALK 487
>gnl|CDD|146036 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 122
Score = 28.9 bits (65), Expect = 3.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 45 IVGLLGRSGSGKSTLLRIIA 64
IV ++G SGK+TL+R +
Sbjct: 2 IVLVVGPKDSGKTTLIRKLL 21
>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep
ATP-dependent reaction that requires the UvrA, UvrB,
and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 261
Score = 28.6 bits (64), Expect = 3.5
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDI 88
L ++ ++ G + + G SGSGKS+L I + P+ + L K+ I
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSL---INDTLYPALARRLHLKKEQPGNHDRI 63
>gnl|CDD|48380 cd03116, MobB, Molybdenum is an essential trace element in the
form of molybdenum cofactor (Moco) which is associated
with the metabolism of nitrogen, carbon and sulfur by
redox active enzymes. In E. coli, the synthesis of Moco
involves genes from several loci: moa, mob, mod, moe
and mog. The mob locus contains mobA and mobB genes.
MobB catalyzes the attachment of the guanine
dinucleotide to molybdopterin..
Length = 159
Score = 28.7 bits (64), Expect = 3.6
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 45 IVGLLGRSGSGKSTLL-RIIAGLV 67
++G +G SGSGK+TLL ++I L
Sbjct: 3 VIGFVGYSGSGKTTLLEKLIPALS 26
>gnl|CDD|30917 COG0572, Udk, Uridine kinase [Nucleotide transport and
metabolism].
Length = 218
Score = 28.7 bits (64), Expect = 3.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 45 IVGLLGRSGSGKSTLLRIIAGLVSPSSGQVL 75
I+G+ G SGSGK+T+ + ++ + V+
Sbjct: 10 IIGIAGGSGSGKTTVAKELSEQLGVEKVVVI 40
>gnl|CDD|35913 KOG0694, KOG0694, KOG0694, Serine/threonine protein kinase [Signal
transduction mechanisms].
Length = 694
Score = 28.3 bits (63), Expect = 3.7
Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 11/124 (8%)
Query: 212 VLMCDRVLVFSSNPGRIAEEVLISI-----PHPRNRLSPEFRQIVEKIYALMTKKEEKRL 266
VL+ + ++ S PG EEV SI +PR LS E I+ + L+ K EKRL
Sbjct: 556 VLLYEMLVGESPFPGDDEEEVFDSIVNDEVRYPRF-LSKEAIAIMRR---LLRKNPEKRL 611
Query: 267 NPLENAPGS-GIGIFLRHVS-TNLLSGLIEAVMAPPYNGKADLPDLANSLQLEADRLFHI 324
E F R + +LL+ I+ P G D+ + E L
Sbjct: 612 GSGERDAEDIKKHPFFRSIDWDDLLNRRIKPPFVPTIKGPEDVSNFDEEFTSEKPALTPS 671
Query: 325 GESL 328
Sbjct: 672 DPRP 675
>gnl|CDD|30002 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific
ATPase/type III secretory pathway virulence-related
protein. This group of ATPases are responsible for the
export of flagellum and virulence-related proteins. The
bacterial flagellar motor is similar to the
F0F1-ATPase, in that they both are proton driven rotary
molecular devices. However, the main function of the
bacterial flagellar motor is to rotate the flagellar
filament for cell motility. Intracellular pathogens
such as Salmonella and Chlamydia also have proteins
which are similar to the flagellar-specific ATPase, but
function in the secretion of virulence-related proteins
via the type III secretory pathway..
Length = 326
Score = 28.6 bits (64), Expect = 3.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 38 FNVSSGEIVGLLGRSGSGKSTLLRIIA 64
V G+ +G+ SG GKSTLL +IA
Sbjct: 64 LTVGKGQRLGIFAGSGVGKSTLLGMIA 90
>gnl|CDD|30586 COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism].
Length = 201
Score = 28.3 bits (63), Expect = 3.8
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 45 IVGLLGRSGSGKSTLLRIIA 64
I+GL G GSGKST+ +I+A
Sbjct: 4 IIGLTGGIGSGKSTVAKILA 23
>gnl|CDD|133278 cd01876, YihA_EngB, The YihA (EngB) subfamily. This subfamily of
GTPases is typified by the E. coli YihA, an essential
protein involved in cell division control. YihA and
its orthologs are small proteins that typically contain
less than 200 amino acid residues and consists of the
GTPase domain only (some of the eukaryotic homologs
contain an N-terminal extension of about 120 residues
that might be involved in organellar targeting).
Homologs of yihA are found in most Gram-positive and
Gram-negative pathogenic bacteria, with the exception
of Mycobacterium tuberculosis. The broad-spectrum
nature of YihA and its essentiality for cell viability
in bacteria make it an attractive antibacterial target.
Length = 170
Score = 28.2 bits (64), Expect = 3.9
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 44 EIVGLLGRSGSGKSTLLR 61
EI GRS GKS+L+
Sbjct: 1 EIA-FAGRSNVGKSSLIN 17
>gnl|CDD|29987 cd01121, Sms, Sms (bacterial radA) DNA repair protein. This protein
is not related to archael radA any more than is to other
RecA-like NTPases. Sms has a role in recombination and
recombinational repair and is responsible for the
stabilization or processing of branched DNA molecules..
Length = 372
Score = 28.3 bits (63), Expect = 4.0
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 4 IAIKDNRLLEIQDICQSFSLKKISGNLLVLDKV-NFNVSSGEIVGLLGRSGSGKSTLLRI 62
++++ + DI ++ ++I + LD+V + G ++ + G G GKSTLL
Sbjct: 43 SGGSASKVIPLSDI-EAEEEERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQ 101
Query: 63 IAGLVSPSSGQVLF 76
+A ++ G+VL+
Sbjct: 102 VAARLAKRGGKVLY 115
>gnl|CDD|38911 KOG3707, KOG3707, KOG3707, Uncharacterized conserved protein
[Function unknown].
Length = 844
Score = 28.4 bits (63), Expect = 4.2
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197
++A + SGG+ +R+ F +F S L F + L+ L++ + L+ G+LP
Sbjct: 385 QTASSASFSGGLQKRLAF-----LFDSTL---TAFLMMGNLSP-TLKSHAVTLFEVGKLP 435
Query: 198 IESMLMVTHNIEEAV 212
ES+ +EE
Sbjct: 436 DESLDSFLSQLEEVQ 450
>gnl|CDD|133260 cd01851, GBP, Guanylate-binding protein (GBP), N-terminal domain.
Guanylate-binding proteins (GBPs) define a group of
proteins that are synthesized after activation of the
cell by interferons. The biochemical properties of
GBPs are clearly different from those of Ras-like and
heterotrimeric GTP-binding proteins. They bind guanine
nucleotides with low affinity (micromolar range), are
stable in their absence and have a high turnover
GTPase. In addition to binding GDP/GTP, they have the
unique ability to bind GMP with equal affinity and
hydrolyze GTP not only to GDP, but also to GMP.
Furthermore, two unique regions around the base and the
phosphate-binding areas, the guanine and the phosphate
caps, respectively, give the nucleotide-binding site a
unique appearance not found in the canonical
GTP-binding proteins. The phosphate cap, which
constitutes the region analogous to switch I,
completely shields the phosphate-binding site from
solvent such that a potential GTPase-activating protein
(GAP) cannot approach.
Length = 224
Score = 28.4 bits (64), Expect = 4.3
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 35 KVNFNVSSGEIVGLLGRSGSGKSTLL 60
K F V+ +V + G SGKS LL
Sbjct: 2 KAGFPVA---VVSVFGPQSSGKSFLL 24
>gnl|CDD|39438 KOG4237, KOG4237, KOG4237, Extracellular matrix protein slit,
contains leucine-rich and EGF-like repeats
[Extracellular structures, Signal transduction
mechanisms].
Length = 498
Score = 28.0 bits (62), Expect = 4.9
Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 13/130 (10%)
Query: 305 ADLPDLANSLQLEADRLFHIGE----SLQLLQLVNLSGGDITLTESGIRFANLDTDSRKK 360
A+LP ++L+ +++ I +L L+ ++LS +I+ F L +
Sbjct: 63 ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDA-FKGLASLLSLV 121
Query: 361 LFAKQLLQHVP------LVNLIRRVLDERRLHSAPAARFRNELEDYMSEEYAQETIDTVV 414
L+ + +P L +L R +L+ ++ R+ + Y + +
Sbjct: 122 LYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLY--DNKIQSI 179
Query: 415 SWGRYAELFS 424
G + L +
Sbjct: 180 CKGTFQGLAA 189
>gnl|CDD|133298 cd01898, Obg, Obg subfamily. The Obg nucleotide binding protein
subfamily has been implicated in stress response,
chromosome partitioning, replication initiation,
mycelium development, and sporulation. Obg proteins
are among a large group of GTP binding proteins
conserved from bacteria to humans. The E. coli
homolog, ObgE is believed to function in ribosomal
biogenesis. Members of the subfamily contain two
equally and highly conserved domains, a C-terminal GTP
binding domain and an N-terminal glycine-rich domain.
Length = 170
Score = 28.1 bits (64), Expect = 5.3
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 46 VGLLGRSGSGKSTLLRII 63
VGL+G +GKSTLL I
Sbjct: 3 VGLVGLPNAGKSTLLSAI 20
>gnl|CDD|30195 cd02022, DPCK, Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24)
catalyzes the phosphorylation of dephosphocoenzyme A
(dCoA) to yield CoA, which is the final step in CoA
biosynthesis..
Length = 179
Score = 27.8 bits (62), Expect = 5.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 45 IVGLLGRSGSGKSTLLRIIAGL 66
I+GL G GSGKST+ +++ L
Sbjct: 1 IIGLTGGIGSGKSTVAKLLKEL 22
>gnl|CDD|145224 pfam01935, DUF87, Domain of unknown function DUF87. The function
of this prokaryotic domain is unknown. It contains
several conserved aspartates and histidines that could
be metal ligands.
Length = 218
Score = 27.7 bits (62), Expect = 6.0
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 46 VGLLGRSGSGKSTLLR-IIAGLV 67
+LG +GSGKS + ++ L+
Sbjct: 26 FAILGSTGSGKSNTVAVLLEELL 48
>gnl|CDD|35682 KOG0461, KOG0461, KOG0461, Selenocysteine-specific elongation
factor [Translation, ribosomal structure and
biogenesis].
Length = 522
Score = 27.7 bits (61), Expect = 6.3
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
N N+ G+LG SGK+TL R ++ L S ++
Sbjct: 6 SNLNL------GILGHVDSGKTTLARALSELGSTAA 35
>gnl|CDD|145542 pfam02456, Adeno_IVa2, Adenovirus IVa2 protein. IVa2 protein can
interact with the adenoviral packaging signal and that
this interaction involves DNA sequences that have
previously been demonstrated to be required for
packaging. During the course of lytic infection, the
adenovirus major late promoter (MLP) is induced to high
levels after replication of viral DNA has started. IVa2
is a transcriptional activator of the major late
promoter.
Length = 370
Score = 27.7 bits (62), Expect = 6.4
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 45 IVGLLGRSGSGKSTLLR--IIAGLVSPSSGQVLF 76
I + G +G GKS LLR + L+ P V F
Sbjct: 89 IGVVYGPTGCGKSQLLRNLLSCQLIQPIPETVFF 122
>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B beta.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, beta (or Akt2) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-beta is the
predominant PKB isoform expressed in insulin-responsive
tissues. It plays a critical role in the regulation of
glucose homeostasis. It is also implicated in muscle
cell differentiation. Mice deficient in PKB-beta display
normal growth weights but exhibit severe insulin
resistance and diabetes, accompanied by lipoatrophy and
B-cell failure.
Length = 323
Score = 27.7 bits (61), Expect = 6.6
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 213 LMCDRVLVFSSNPGRIAEEVLI-SIPHPRNRLSPEFRQIVEKIYALMTKKEEKRL 266
+MC R+ ++ + R+ E +L+ I PR LSPE + ++ L+ K ++RL
Sbjct: 188 MMCGRLPFYNQDHERLFELILMEEIRFPRT-LSPEAKSLLA---GLLKKDPKQRL 238
>gnl|CDD|31262 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III
[Energy production and conversion].
Length = 366
Score = 27.8 bits (62), Expect = 6.7
Identities = 8/24 (33%), Positives = 18/24 (75%)
Query: 187 LIDLWIEGRLPIESMLMVTHNIEE 210
L+DL++ G+LP++ ++ T +E+
Sbjct: 323 LVDLYMAGKLPLDRLVTHTIPLED 346
>gnl|CDD|133370 cd04170, EF-G_bact, Elongation factor G (EF-G) subfamily.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G
in the GTP form binds to the ribosome, primarily
through the interaction of its EF-Tu-like domain with
the 50S subunit. The binding of EF-G to the ribosome
in this manner stimulates the GTPase activity of EF-G.
On GTP hydrolysis, EF-G undergoes a conformational
change that forces its arm deeper into the A site on
the 30S subunit. To accommodate this domain, the
peptidyl-tRNA in the A site moves to the P site,
carrying the mRNA and the deacylated tRNA with it. The
ribosome may be prepared for these rearrangements by
the initial binding of EF-G as well. The dissociation
of EF-G leaves the ribosome ready to accept the next
aminoacyl-tRNA into the A site. This group contains
only bacterial members.
Length = 268
Score = 27.5 bits (62), Expect = 6.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 46 VGLLGRSGSGKSTLL 60
+ L+G SGSGK+TL
Sbjct: 2 IALVGHSGSGKTTLA 16
>gnl|CDD|30653 COG0305, DnaB, Replicative DNA helicase [DNA replication,
recombination, and repair].
Length = 435
Score = 27.5 bits (61), Expect = 7.0
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 13 EIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA 64
EI+ ++ L + LD++ G+++ + R G GK+ L IA
Sbjct: 166 EIEARFENGGLIGVPTGFTDLDEITSGFRPGDLIIVAARPGMGKTALALNIA 217
>gnl|CDD|31351 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway
ATPase [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 441
Score = 27.5 bits (61), Expect = 7.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 43 GEIVGLLGRSGSGKSTLLRIIA 64
G+ +G+ SG GKSTLL +IA
Sbjct: 163 GQRIGIFAGSGVGKSTLLGMIA 184
>gnl|CDD|39857 KOG4658, KOG4658, KOG4658, Apoptotic ATPase [Signal transduction
mechanisms].
Length = 889
Score = 27.6 bits (61), Expect = 7.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 45 IVGLLGRSGSGKSTLLRII 63
IVG+ G G GK+TL R I
Sbjct: 181 IVGIYGMGGVGKTTLARQI 199
>gnl|CDD|73395 cd04733, OYE_like_2_FMN, Old yellow enzyme (OYE)-related FMN
binding domain, group 2. Each monomer of OYE contains
FMN as a non-covalently bound cofactor, uses NADPH as a
reducing agent with oxygens, quinones, and
alpha,beta-unsaturated aldehydes and ketones, and can
act as electron acceptors in the catalytic reaction.
Other members of OYE family include trimethylamine
dehydrogenase, 2,4-dienoyl-CoA reductase, enoate
reductase, pentaerythriol tetranitrate reductase,
xenobiotic reductase, and morphinone reductase..
Length = 338
Score = 27.4 bits (61), Expect = 7.6
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 136 GFESAHTTE--ISGGMLQRVGFARAFVVFPSL 165
GF + E ++ G + +G AR + P L
Sbjct: 300 GFRTRAAMEQALASGAVDGIGLARPLALEPDL 331
>gnl|CDD|145848 pfam02906, Fe_hyd_lg_C, Iron only hydrogenase large subunit,
C-terminal domain.
Length = 286
Score = 27.6 bits (62), Expect = 7.7
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 59 LLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVF 92
LL ++ SP +F G IK P+DI VV
Sbjct: 102 LLPNLSTCKSP---MQMF-GALIKTDPEDIFVVS 131
>gnl|CDD|31354 COG1160, COG1160, Predicted GTPases [General function prediction
only].
Length = 444
Score = 27.5 bits (61), Expect = 7.7
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 46 VGLLGRSGSGKSTLLRIIAG----LVSPSSG 72
+ ++GR GKS+L+ I G +VS +G
Sbjct: 181 IAIIGRPNVGKSSLINAILGEERVIVSDIAG 211
>gnl|CDD|34569 COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF
[Intracellular trafficking and secretion].
Length = 355
Score = 27.6 bits (61), Expect = 8.0
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 14/64 (21%)
Query: 20 SFSLKKISGNLLVLDK-VNFNVSSGEIVGLL-------------GRSGSGKSTLLRIIAG 65
+ S++K L L + F L G +GSGK+TLL ++G
Sbjct: 136 TLSIRKFPKIKLTLLDLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSG 195
Query: 66 LVSP 69
+
Sbjct: 196 FIDS 199
>gnl|CDD|73042 cd03283, ABC_MutS-like, MutS-like homolog in eukaryotes. The
MutS protein initiates DNA mismatch repair by
recognizing mispaired and unpaired bases embedded in
duplex DNA and activating endo- and exonucleases to
remove the mismatch. Members of the MutS family
possess C-terminal domain with a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified
in most prokaryotic and all eukaryotic organisms
examined. Prokaryotes have two homologs (MutS1 and
MutS2), whereas seven MSH proteins (MSH1 to MSH7) have
been identified in eukaryotes. The homodimer MutS1 and
heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily
involved in mitotic mismatch repair, whereas MSH4-MSH5
is involved in resolution of Holliday junctions during
meiosis. All members of the MutS family contain the
highly conserved Walker A/B ATPase domain, and many
share a common mechanism of action. MutS1, MSH2-MSH3,
MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding
clamps, and recognition of specific DNA structures or
lesions results in ADP/ATP exchange..
Length = 199
Score = 27.1 bits (60), Expect = 8.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 37 NFNVSSGEIVGLLGRSGSGKSTLLRIIA 64
+ ++ + + G + SGKST LR I
Sbjct: 19 DIDMEKKNGILITGSNMSGKSTFLRTIG 46
>gnl|CDD|29986 cd01120, RecA-like_NTPases, RecA-like NTPases. This family
includes the NTP binding domain of F1 and V1 H+ATPases,
DnaB and related helicases as well as bacterial RecA
and related eukaryotic and archaeal recombinases. This
group also includes bacterial conjugation proteins and
related DNA transfer proteins involved in type II and
type IV secretion..
Length = 165
Score = 27.4 bits (60), Expect = 9.0
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 45 IVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF 76
++ + G +GSGK+TL +A ++ G+V++
Sbjct: 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVY 32
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.138 0.387
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,261,729
Number of extensions: 286127
Number of successful extensions: 1488
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1233
Number of HSP's successfully gapped: 273
Length of query: 438
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 341
Effective length of database: 4,167,664
Effective search space: 1421173424
Effective search space used: 1421173424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.7 bits)