RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide
binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62]
(438 letters)
>gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely.
Length = 353
Score = 205 bits (523), Expect = 2e-53
Identities = 100/244 (40%), Positives = 140/244 (57%), Gaps = 22/244 (9%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
L I +I + F G L ++ +V GE V LLG SG GK+TLLRIIAGL ++
Sbjct: 5 LSIDNIRKRF------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTA 58
Query: 72 GQVLFKGKKIKD-PPK--DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSA 128
G + G+ I PP+ D +VFQ++ALFP LTV +N+ GLK +G+ + E +R
Sbjct: 59 GTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAEL 118
Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188
+DL+GL G E + ++SGG QRV ARA P LLL+DEP SALD E+LRT++
Sbjct: 119 LDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIR 178
Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIP-----HPRNRL 243
L + RL + ++ MVTH+ EEA+ M DR++V N G I + + P HP
Sbjct: 179 QL--QRRLGVTTI-MVTHDQEEALSMADRIVVM--NHGVIEQ---VGTPQEIYRHPATPF 230
Query: 244 SPEF 247
+F
Sbjct: 231 VADF 234
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 203 bits (519), Expect = 6e-53
Identities = 87/218 (39%), Positives = 124/218 (56%), Gaps = 14/218 (6%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVV 91
L+ +N + SGE++ +LG SG GK+TLL +IAG V G + GK ++ P + VV
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVV 75
Query: 92 FQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQ 151
FQ L PW V +NV GL+ G++K +R + A + +GL+G E + ++SGG Q
Sbjct: 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQ 135
Query: 152 RVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEA 211
RVG ARA P LLL+DEPF ALD T E ++T L+ LW E + L++TH+IEEA
Sbjct: 136 RVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQV---LLITHDIEEA 192
Query: 212 VLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSPEFRQ 249
V M +++ S PGR+ E RL F +
Sbjct: 193 VFMATELVLLSPGPGRVVE-----------RLPLNFAR 219
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase.
Length = 230
Score = 196 bits (499), Expect = 1e-50
Identities = 94/214 (43%), Positives = 135/214 (63%), Gaps = 6/214 (2%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVF 92
L VN + GE + L+G SG GKSTLL +I+GL P+SG V+ +GK+I +P D VVF
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 93 QTFALFPWLTVLENVELGLKA--KGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGML 150
Q ++L PWLTV EN+ L + + K ERR I L+GL ++SGGM
Sbjct: 61 QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMK 120
Query: 151 QRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEE 210
QRV ARA + P +LL+DEPF ALD LT NL+ +L+ +W E R+ ++LMVTH+++E
Sbjct: 121 QRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRV---TVLMVTHDVDE 177
Query: 211 AVLMCDRVLVFSSNPG-RIAEEVLISIPHPRNRL 243
A+L+ DRV++ ++ P I + + + P PR+RL
Sbjct: 178 ALLLSDRVVMLTNGPAANIGQILEVPFPRPRDRL 211
>gnl|CDD|150485 pfam09821, ABC_transp, ABC nitrate/sulfonate/bicarbonate family
transporter, ATPase subunit. Members of this family are
found in various prokaryotic ABC transporters,
predominantly involved in nitrate, sulfonate and
bicarbonate translocation.
Length = 120
Score = 176 bits (449), Expect = 8e-45
Identities = 72/120 (60%), Positives = 83/120 (69%)
Query: 308 PDLANSLQLEADRLFHIGESLQLLQLVNLSGGDITLTESGIRFANLDTDSRKKLFAKQLL 367
P LA+ LQL+ D LF I E+ +LL L GGDI LT G RFA D D RK+LFA+QLL
Sbjct: 1 PQLADELQLDIDDLFPIVEAAELLGFAELEGGDIELTPLGRRFAEADIDERKELFAEQLL 60
Query: 368 QHVPLVNLIRRVLDERRLHSAPAARFRNELEDYMSEEYAQETIDTVVSWGRYAELFSYDE 427
HVPL IRRVLDER H AP RF +ELEDY+S E A+ T+ T + WGRYAELF YDE
Sbjct: 61 AHVPLAAHIRRVLDERPSHRAPEERFLDELEDYLSPEEAERTLRTAIDWGRYAELFEYDE 120
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 174 bits (442), Expect = 5e-44
Identities = 87/223 (39%), Positives = 133/223 (59%), Gaps = 14/223 (6%)
Query: 9 NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68
+ +++I + F G+ V+D +N + G +V LLG SG GK+T+LR++AGL
Sbjct: 4 KNFVVLKNITKRF------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK 57
Query: 69 PSSGQVLFKGKKIKDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA 125
P+ GQ+ G+ + +DI +VFQ++ALFP +++ ENV GLK G+ KEER++R
Sbjct: 58 PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRV 117
Query: 126 LSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRT 185
A++L+ L GFE + +ISGG QRV ARA ++ P +LL DEP S LD ++R
Sbjct: 118 KEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMRE 177
Query: 186 DLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228
+ +L + + I S L VTH+ EA + D V+V N G+I
Sbjct: 178 KIREL--QQQFNITS-LYVTHDQSEAFAVSDTVIVM--NKGKI 215
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature.
Length = 363
Score = 173 bits (441), Expect = 7e-44
Identities = 87/268 (32%), Positives = 147/268 (54%), Gaps = 24/268 (8%)
Query: 25 KISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDP 84
K +G ++ + ++ GEI ++G SGSGKST +R++ L+ P++GQ+ G+ I
Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ 60
Query: 85 PKD---------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLD 135
I +VFQ FALFP +T+L+N LG + G ++ER+++AL + L+GL+
Sbjct: 61 SPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE 120
Query: 136 GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195
+E + E+SGGM QRVG ARA P +LLMDE FSALD L ++++ +L L
Sbjct: 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKL---QA 177
Query: 196 LPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIP-----HPRNRLSPEFRQI 250
++++ +TH+++EA+ + DR+++ + E V + P +P N EF
Sbjct: 178 TLQKTIVFITHDLDEAIRIGDRIVIMKA-----GEIVQVGTPDEILRNPANEYVEEFIGK 232
Query: 251 VEKIYALMTKKEEKRLN--PLENAPGSG 276
V+ ++ +R+N P+ G
Sbjct: 233 VDLSQVFDAERIAQRMNTGPITKTADKG 260
>gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines.
Length = 382
Score = 170 bits (433), Expect = 6e-43
Identities = 87/215 (40%), Positives = 129/215 (60%), Gaps = 18/215 (8%)
Query: 27 SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFK-GKKIKDP- 84
+G ++ + + ++ GEI L+G SGSGKS+LLR + GL S G VL K G D
Sbjct: 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVA 93
Query: 85 -----------PKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIG 133
+S+VFQ FAL PWLTV ENV GL+ +G+ + ERRKR ++L+G
Sbjct: 94 NCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVG 153
Query: 134 LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIE 193
L + E+SGGM QRVG ARAF + +LLMDEPFSALD L L+ +L++L +
Sbjct: 154 LAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLEL--Q 211
Query: 194 GRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228
+L ++++ V+H+++EA+ + +R+ + GRI
Sbjct: 212 AKLN-KTIIFVSHDLDEALKIGNRIAIMEG--GRI 243
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
Length = 237
Score = 168 bits (427), Expect = 2e-42
Identities = 96/244 (39%), Positives = 136/244 (55%), Gaps = 22/244 (9%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
+EI +I + F G+ LD VN V +G +V LLG SGSGKSTLLRIIAGL P S
Sbjct: 1 IEIANISKRF------GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDS 54
Query: 72 GQVLFKGKKI-KDPPKD--ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSA 128
G++ G+ + +D I VFQ +ALF LTV +N+ GL+ + K + + R
Sbjct: 55 GRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEEL 114
Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188
++L+ L+G + ++SGG QRV ARA V P +LL+DEPF ALD + LR+ L
Sbjct: 115 LELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLR 174
Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI-----AEEVLISIPHPRNRL 243
L E + + + VTH+ EEA+ + DR++V S+ G+I +EV HP N
Sbjct: 175 KLHDEVHV---TTVFVTHDQEEAMEVADRIVVMSN--GKIEQIGSPDEVY---DHPANPF 226
Query: 244 SPEF 247
F
Sbjct: 227 VMSF 230
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included).
Length = 325
Score = 160 bits (406), Expect = 7e-40
Identities = 82/208 (39%), Positives = 121/208 (58%), Gaps = 16/208 (7%)
Query: 48 LLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP---KDISVVFQTFALFPWLTVL 104
LLG SG GK+TLLR++AG P SG ++ G+ + + P + I++VFQ++ALFP +TV
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 105 ENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPS 164
ENV GLK + + + E + R L A+ L+ L+ F ++SGG QRV ARA V P
Sbjct: 61 ENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPK 120
Query: 165 LLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSN 224
+LL+DEP SALD + ++ +L I+ +L I + + VTH+ EEA+ M DR+ +
Sbjct: 121 ILLLDEPLSALDKKLRDQMQLELKT--IQEQLGI-TFVFVTHDQEEAMTMSDRIAIMRK- 176
Query: 225 PGRIAEEVLISIP-----HPRNRLSPEF 247
G+IA+ I P P N F
Sbjct: 177 -GKIAQ---IGTPEEIYEEPANLFVARF 200
>gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 160 bits (406), Expect = 8e-40
Identities = 82/233 (35%), Positives = 134/233 (57%), Gaps = 15/233 (6%)
Query: 1 MANIAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60
+ L+E++ I +SF K++ + ++ +++GE + LLG SG GK+T+L
Sbjct: 5 NKQPSSLSP-LVELRGISKSFDGKEV------ISNLDLTINNGEFLTLLGPSGCGKTTVL 57
Query: 61 RIIAGLVSPSSGQVLFKGKKIKDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGID 117
R+IAG +P SG+++ G+ I P + ++ VFQ++ALFP +TV ENV GL+ +
Sbjct: 58 RLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTP 117
Query: 118 KEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
E R + A+ ++ L+ F ++SGG QRV ARA V P +LL+DE SALD
Sbjct: 118 AAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDY 177
Query: 178 LTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
+ ++ +L L + +L I + + VTH+ EEA+ M DR++V GRI +
Sbjct: 178 KLRKQMQNELKAL--QRKLGI-TFVFVTHDQEEALTMSDRIVVM--RDGRIEQ 225
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 154 bits (392), Expect = 3e-38
Identities = 88/225 (39%), Positives = 135/225 (60%), Gaps = 13/225 (5%)
Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81
++ K G VL++++ ++ +G+ V ++GRSG GKSTLLR++AGL +PS+G++L +
Sbjct: 17 AVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL 76
Query: 82 KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAH 141
+ +D ++FQ L PW V++NV LGLK + R AL A+ +GL +
Sbjct: 77 AEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQW------RDAALQALAAVGLADRANEW 130
Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLID-LWIEGRLPIES 200
+SGG QRV ARA + P LLL+DEP ALD LT ++ DLI+ LW + +
Sbjct: 131 PAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQ-DLIESLWQQHGF---T 186
Query: 201 MLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSP 245
+L+VTH++ EAV M DRVL+ G+I ++ + +P PR R S
Sbjct: 187 VLLVTHDVSEAVAMADRVLLIEE--GKIGLDLTVDLPRPRRRGSA 229
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 150 bits (380), Expect = 8e-37
Identities = 105/255 (41%), Positives = 139/255 (54%), Gaps = 28/255 (10%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
++E +++ + F G VL ++ N+ GE+V ++G SGSGKSTLLR I L +
Sbjct: 1 MIEFKNVSKHF------GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT 54
Query: 71 SGQVLFKGKKIKDPPKDI-------SVVFQTFALFPWLTVLENVELG-LKAKGIDKEERR 122
SG ++ G K+ DP D +VFQ F LFP LT LENV G L+ +G KEE
Sbjct: 55 SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAE 114
Query: 123 KRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV-LTAE 181
K+A + +GL + +E+SGG QRV ARA V P L+L DEP SALD L E
Sbjct: 115 KQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHE 174
Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE----EVLISIP 237
L+ + DL EG +M++VTH I A + R L+F GRIAE +VLI P
Sbjct: 175 VLKV-MQDLAEEGM----TMVIVTHEIGFAEKVASR-LIFIDK-GRIAEDGDPQVLIKNP 227
Query: 238 HPRNRLSPEFRQIVE 252
P RL EF Q V
Sbjct: 228 -PSQRLQ-EFLQHVS 240
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 149 bits (378), Expect = 1e-36
Identities = 79/233 (33%), Positives = 131/233 (56%), Gaps = 11/233 (4%)
Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS--SGQVLFKGK 79
L+ G VLD ++ + +GE++ L+G+SG GK+TLLR IAG V + +G++ +
Sbjct: 10 HLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADR 69
Query: 80 KIKDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDG 136
+ P + ++++FQ +ALFP L V +NV GL+A+ + K + +R A+ L+GL
Sbjct: 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGD 129
Query: 137 FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL 196
+ ++SGGM QR+ ARA + P +LL+DEP SALD N+R ++ L L
Sbjct: 130 AAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAAL--HEEL 187
Query: 197 PIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE--EVLISIPHPRNRLSPEF 247
P ++L VTH+ ++A+ + D+ + GR+A E P + + EF
Sbjct: 188 PELTILCVTHDQDDALTLADKAGIMKD--GRLAAHGEPQALYDAPADGFAAEF 238
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 149 bits (379), Expect = 1e-36
Identities = 83/220 (37%), Positives = 123/220 (55%), Gaps = 20/220 (9%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
+EI +I +SF G VL+ ++ ++ SG++V LLG SGSGK+TLLRIIAGL +S
Sbjct: 3 IEIANIKKSF------GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTS 56
Query: 72 GQVLFKGKKI-----KDPPKDISVVFQTFALFPWLTVLENVELGLKA----KGIDKEERR 122
G + F G + +D + + VFQ +ALF +TV +N+ GL + + +
Sbjct: 57 GHIRFHGTDVSRLHARD--RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIK 114
Query: 123 KRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAEN 182
+ ++++ L + ++SGG QRV ARA V P +LL+DEPF ALD +
Sbjct: 115 AKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKE 174
Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFS 222
LR L L E L S+ VTH+ EEA+ + DRV+V S
Sbjct: 175 LRRWLRQLHEE--LKFTSVF-VTHDQEEAMEVADRVVVMS 211
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 149 bits (377), Expect = 2e-36
Identities = 91/245 (37%), Positives = 136/245 (55%), Gaps = 22/245 (8%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
LLEI+++ +SF G V D V+ + GEI LLG SG GKSTLLR++AG P+
Sbjct: 19 LLEIRNLTKSFD-----GQHAV-DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT 72
Query: 71 SGQVLFKGKKIKDPP---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALS 127
+GQ++ G + P + I+++FQ++ALFP +TV +N+ GLK + K E R
Sbjct: 73 AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNE 132
Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187
+ L+ + F ++SGG QRV AR+ P LLL+DEP ALD + ++ ++
Sbjct: 133 MLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV 192
Query: 188 IDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIP-----HPRNR 242
+D I R+ + + +MVTH+ EEA+ M R+ + N G+ V I P HP R
Sbjct: 193 VD--ILERVGV-TCVMVTHDQEEAMTMAGRIAIM--NRGKF---VQIGEPEEIYEHPTTR 244
Query: 243 LSPEF 247
S EF
Sbjct: 245 YSAEF 249
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 144 bits (363), Expect = 7e-35
Identities = 80/206 (38%), Positives = 130/206 (63%), Gaps = 12/206 (5%)
Query: 27 SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG---KKIKD 83
+G L + + + GEI ++G SGSGKST++R++ L+ P+ GQVL G KI D
Sbjct: 38 TGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISD 97
Query: 84 PP------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGF 137
K I++VFQ+FAL P +TVL+N G++ GI+ EERR++AL A+ +GL+ +
Sbjct: 98 AELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENY 157
Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197
++ E+SGGM QRVG ARA + P +LLMDE FSALD L ++ +L+ L + +
Sbjct: 158 AHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ-- 215
Query: 198 IESMLMVTHNIEEAVLMCDRVLVFSS 223
+++ ++H+++EA+ + DR+ + +
Sbjct: 216 -RTIVFISHDLDEAMRIGDRIAIMQN 240
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates.
Length = 243
Score = 142 bits (361), Expect = 1e-34
Identities = 83/236 (35%), Positives = 121/236 (51%), Gaps = 26/236 (11%)
Query: 24 KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF------- 76
K L +N N++ GE V ++G SG+GKSTLLR I LV PSSG +L
Sbjct: 9 KVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITK 68
Query: 77 -KGKKIKDPPKDISVVFQTFALFPWLTVLENVELG-LKAK-------GIDKEERRKRALS 127
+GKK++ + I ++FQ + L LTVLENV G L K G EE ++RALS
Sbjct: 69 LRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALS 128
Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187
A++ +GL ++SGG QRV ARA P L+L DEP ++LD T++ + L
Sbjct: 129 ALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYL 188
Query: 188 IDLWIEGRLPIESMLMVTHNIEEAVLMCDRVL-------VFSSNPGRIAEEVLISI 236
+ E + + ++ H ++ A DR++ VF P + +EVL I
Sbjct: 189 KRINKEDGITV---IINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELDDEVLRHI 241
>gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins.
Length = 206
Score = 139 bits (353), Expect = 1e-33
Identities = 75/206 (36%), Positives = 113/206 (54%), Gaps = 14/206 (6%)
Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82
+ K G+ ++LD +N + G++ ++G SGSGKSTLL II L SGQV GK+
Sbjct: 4 ISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETP 63
Query: 83 DPPK---------DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIG 133
+ +FQ FAL TV EN++LGLK K + K+E+R++ A++ +G
Sbjct: 64 PLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVG 123
Query: 134 LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIE 193
L+ E+SGG QRV ARA + P L+L DEP +LD + + L++L E
Sbjct: 124 LNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDE 183
Query: 194 GRLPIESMLMVTHNIEEAVLMCDRVL 219
G+ +++VTH+ E A DRV+
Sbjct: 184 GKT----IIIVTHDPEVAK-QADRVI 204
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 138 bits (349), Expect = 3e-33
Identities = 80/233 (34%), Positives = 126/233 (54%), Gaps = 22/233 (9%)
Query: 1 MANIAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60
MA++ +++ + +++ IS + +N ++ GE V +G SG GKSTLL
Sbjct: 1 MASVTLRN--------VTKAYGDVVISKD------INLDIHEGEFVVFVGPSGCGKSTLL 46
Query: 61 RIIAGLVSPSSGQVLFKGKKIKD-PPKDISV--VFQTFALFPWLTVLENVELGLKAKGID 117
R+IAGL +SG + K++ D PP + V VFQ++AL+P L+V EN+ GLK G
Sbjct: 47 RMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK 106
Query: 118 KEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
KEE +R +++ L +SGG QRV R V PS+ L+DEP S LD
Sbjct: 107 KEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
Query: 178 LTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
+R ++ L RL +M+ VTH+ EA+ + D+++V + GR+A+
Sbjct: 167 ALRVQMRIEISRL--HKRLG-RTMIYVTHDQVEAMTLADKIVVL--DAGRVAQ 214
>gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 137 bits (348), Expect = 5e-33
Identities = 82/239 (34%), Positives = 124/239 (51%), Gaps = 37/239 (15%)
Query: 1 MANIAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60
MA + ++ R K G V+ ++ +V+ GE + L+G SG GKSTLL
Sbjct: 1 MAGLKLQAVR-------------KSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLL 47
Query: 61 RIIAGLVSPSSGQVLFKGKKIKD-PPK--DISVVFQTFALFPWLTVLENVELGLKAKGID 117
R++AGL +SG++ G+ + + P DI++VFQ +AL+P ++V EN+ GLK +G+
Sbjct: 48 RMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMP 107
Query: 118 KEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
K E +R A ++ L+ E+SGG QRV RA V P++ L DEP S LD
Sbjct: 108 KAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167
Query: 178 LTAENLRTDLIDLWIEGRLPIESM--------LMVTHNIEEAVLMCDRVLVFSSNPGRI 228
LR ++ RL I+ + L VTH+ EA+ + DRV+V N G
Sbjct: 168 ----KLR-------VQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVM--NGGVA 213
>gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 136 bits (344), Expect = 1e-32
Identities = 84/248 (33%), Positives = 133/248 (53%), Gaps = 23/248 (9%)
Query: 13 EIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSG 72
E+++I + F + L+ V+ ++ +GEI G++G SG+GKSTL+R I L P+SG
Sbjct: 3 ELKNISKVFPQGG--RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSG 60
Query: 73 QVLFKGK---KIKDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKR 124
+VL G+ + + + I ++FQ F L TV +NV L L+ G K E + R
Sbjct: 61 RVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKAR 120
Query: 125 ALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184
++L+GL + ++SGG QRV ARA P +LL DE SALD T
Sbjct: 121 VTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT----- 175
Query: 185 TDLI-DLW--IEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLIS--IPHP 239
T I +L I L + +++++TH ++ +CDRV V + GR+ E+ +S HP
Sbjct: 176 TRSILELLKDINRELGL-TIVLITHEMDVVKRICDRVAVIDA--GRLVEQGTVSEVFSHP 232
Query: 240 RNRLSPEF 247
++ L+ EF
Sbjct: 233 KHPLTREF 240
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 134 bits (338), Expect = 6e-32
Identities = 84/223 (37%), Positives = 115/223 (51%), Gaps = 24/223 (10%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF--------KGK 79
G L VLD +NF+V++GE V L+G SGSGKST+LRI+ L GQ+ G+
Sbjct: 11 GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGR 70
Query: 80 KIKDPPKD----------ISVVFQTFALFPWLTVLENVELG-LKAKGIDKEERRKRALSA 128
P D I +VFQ+F LFP TVL+NV + G+ + E KRA+
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMEL 130
Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188
+D++GL ++SGG QRV ARA + P ++L DE SALD + +
Sbjct: 131 LDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIR 190
Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
L E L +ML+VTH + A DRV F + GRI E+
Sbjct: 191 RLASEHDL---TMLLVTHEMGFAREFADRVCFF--DKGRIVEQ 228
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter.
Length = 354
Score = 128 bits (323), Expect = 3e-30
Identities = 71/195 (36%), Positives = 101/195 (51%), Gaps = 14/195 (7%)
Query: 35 KVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG-------KKIKDPP-- 85
+F + + + GRSGSGK+TL+R+IAGL P G+++ G K I PP
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74
Query: 86 KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEI 145
+ I VFQ LFP L+V N+ G+K ERR I+L+G+ +
Sbjct: 75 RRIGYVFQEARLFPHLSVRGNLRYGMKR--ARPSERRISFERVIELLGIGHLLGRLPGRL 132
Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVT 205
SGG QRV RA + P LLLMDEP +ALD + L L E +P +L V+
Sbjct: 133 SGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIP---ILYVS 189
Query: 206 HNIEEAVLMCDRVLV 220
H+++E + + DRV+V
Sbjct: 190 HSLQEVLRLADRVVV 204
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc.
Length = 302
Score = 126 bits (319), Expect = 1e-29
Identities = 70/211 (33%), Positives = 111/211 (52%), Gaps = 10/211 (4%)
Query: 25 KISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-KD 83
K+ G+ +D VNF V GE+ G LG +G+GK+T +R++ L+ P+SG G + ++
Sbjct: 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE 60
Query: 84 PPK---DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESA 140
P K I +V Q ++ LT EN+E+ + G+ K+E +RA ++L L
Sbjct: 61 PRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR 120
Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200
SGGM +R+ A + + P +L +DEP + LD T + D I E + I
Sbjct: 121 PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIW-DYIRALKEEGVTI-- 177
Query: 201 MLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
L+ TH +EEA +CDR+ + + GRI E
Sbjct: 178 -LLTTHYMEEADKLCDRIAII--DHGRIIAE 205
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 125 bits (316), Expect = 2e-29
Identities = 79/251 (31%), Positives = 135/251 (53%), Gaps = 21/251 (8%)
Query: 11 LLEIQDICQSF--SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68
++++ +I + F K I L+ V+ +V +G+I G++G SG+GKSTL+R + L
Sbjct: 1 MIKLSNITKVFHQGTKTIQA----LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER 56
Query: 69 PSSGQVLFKGK---KIKDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEE 120
P+SG V+ G+ + + + I ++FQ F L TV NV L L+ K+E
Sbjct: 57 PTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDE 116
Query: 121 RRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180
+++ + L+GL ++ + +SGG QRV ARA P +LL DE SALD T
Sbjct: 117 IKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176
Query: 181 ENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLIS--IPH 238
+++ L + I RL + ++L++TH ++ +CD V V S+ G + E+ +S H
Sbjct: 177 QSILELLKE--INRRLGL-TILLITHEMDVVKRICDCVAVISN--GELIEQGTVSEIFSH 231
Query: 239 PRNRLSPEFRQ 249
P+ L+ +F +
Sbjct: 232 PKTPLAQKFIR 242
>gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP)
Family protein.
Length = 216
Score = 125 bits (316), Expect = 2e-29
Identities = 70/204 (34%), Positives = 109/204 (53%), Gaps = 12/204 (5%)
Query: 27 SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI----- 81
G+ LD +NF+++ GE+V L+G SG+GKST L++I G+ P+ G++ F G+ +
Sbjct: 13 GGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRG 72
Query: 82 KDPPK---DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFE 138
++ P I +VFQ L TV +NV L+ G+ + +R +A++ +GL+G
Sbjct: 73 REIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKA 132
Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198
A ++SGG QRV ARA V P LLL DEP LD + D++ L+ E
Sbjct: 133 HALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSR----DIMRLFEEFNRRG 188
Query: 199 ESMLMVTHNIEEAVLMCDRVLVFS 222
++L+ TH+I R L S
Sbjct: 189 TTVLVATHDINLVETYRHRTLTLS 212
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina.
Length = 221
Score = 123 bits (311), Expect = 8e-29
Identities = 79/219 (36%), Positives = 122/219 (55%), Gaps = 15/219 (6%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
LL+ +++ + + K+ VL V+ ++ GEIV ++G SGSGKSTLL ++ GL +P+
Sbjct: 1 LLKCENLGKRYQEGKLD--TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT 58
Query: 71 SGQVLFKGKKI---------KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEER 121
SG+VLF G+ + K K + ++Q L P T LENV + L +E
Sbjct: 59 SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEA 118
Query: 122 RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAE 181
++RA ++ +GL+ + +E+SGG QRV ARA V PSL+L DEP LD A+
Sbjct: 119 KERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAK 178
Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220
+ +++L E S L+VTH++E A + DRVL
Sbjct: 179 IIFDLMLELNRELNT---SFLVVTHDLELAKKL-DRVLE 213
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found.
Length = 213
Score = 123 bits (309), Expect = 1e-28
Identities = 70/196 (35%), Positives = 110/196 (56%), Gaps = 8/196 (4%)
Query: 37 NFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKK-IKDPP--KDISVVFQ 93
+ NV+ GEIV ++G SG+GKSTLL +IAG + P+SG + + P + +S++FQ
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 94 TFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRV 153
LF LTV +N+ LGL E++++ + A +G+ + ++SGG QRV
Sbjct: 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRV 137
Query: 154 GFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVL 213
AR V +LL+DEPFSALD L E + + L E + ++LMVTH++ +A
Sbjct: 138 ALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQR---TLLMVTHHLSDARA 194
Query: 214 MCDRVLVFSSNPGRIA 229
+ ++ V S G+I
Sbjct: 195 IASQIAVVSQ--GKIK 208
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 119 bits (300), Expect = 1e-27
Identities = 90/239 (37%), Positives = 123/239 (51%), Gaps = 28/239 (11%)
Query: 24 KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVL-------- 75
KK G VL ++ V GE+V ++G SGSGK+TLLR I L P +G +
Sbjct: 11 KKFHGQT-VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDT 69
Query: 76 ---FKGKK--IKDPPKDISVVFQTFALFPWLTVLENVELG-LKAKGIDKEERRKRALSAI 129
+K I+ + + VFQ F LFP TVLEN+ G + KG KEE RA +
Sbjct: 70 ARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELL 129
Query: 130 DLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV-LTAENLRTDLI 188
+GL G E+++ +SGG QRV ARA + P ++L DEP SALD L E L T +
Sbjct: 130 AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNT-IR 188
Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE----VLISIP-HPRNR 242
L E R +M++VTH + A + DR + + GRI E+ L + P PR R
Sbjct: 189 QLAQEKR----TMVIVTHEMSFARDVADRAIFM--DQGRIVEQGPAKALFADPQQPRTR 241
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
Length = 265
Score = 119 bits (299), Expect = 2e-27
Identities = 82/252 (32%), Positives = 126/252 (50%), Gaps = 24/252 (9%)
Query: 11 LLEIQDIC---QSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67
LLE++D+ ++ L VL V+ ++ GE VGLLGRSG GKSTL R++ GL
Sbjct: 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61
Query: 68 SPSSGQVLFKG--------KKIKDPPKDISVVFQTF--ALFPWLTVLENVELGLK-AKGI 116
P+ G V F+G K+ + +D+ +VFQ A+ P +TV + + L+ +
Sbjct: 62 KPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSL 121
Query: 117 DKEERRKRALSAIDLIGLDG-FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175
D+ E++ R +D++GL ++SGG LQR+ ARA V P L+++DE S L
Sbjct: 122 DESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNL 181
Query: 176 DVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV--- 232
D++ + L L + L +TH++ C RV V G+I EE
Sbjct: 182 DMVLQAVILELLRKLQQAFGT---AYLFITHDLRLVQSFCQRVAVMDK--GQIVEECDVA 236
Query: 233 -LISIPHPRNRL 243
L+S HP R
Sbjct: 237 QLLSFKHPAGRN 248
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking
protein.
Length = 214
Score = 118 bits (299), Expect = 2e-27
Identities = 70/202 (34%), Positives = 106/202 (52%), Gaps = 16/202 (7%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP-- 85
G + L V+ ++ GE + L G SG+GK+TLL+++ G ++PS GQV G+ +
Sbjct: 13 GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGR 72
Query: 86 ------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFES 139
+ I VVFQ F L P TV ENV L L+ +G + E ++R +A+ +GL+
Sbjct: 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE--HK 130
Query: 140 AHTT--EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197
A ++SGG QRV ARA V P LLL DEP LD +E + L L G
Sbjct: 131 ADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG--- 187
Query: 198 IESMLMVTHNIEEAVLMCDRVL 219
++++ TH++ + RV+
Sbjct: 188 -TTVIVATHDLSLVDRVAHRVI 208
>gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 118 bits (299), Expect = 3e-27
Identities = 73/240 (30%), Positives = 118/240 (49%), Gaps = 29/240 (12%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
+LE +++ G +LD V+ + GE+V +LG +G+GKSTLLR ++G +SP
Sbjct: 2 MLEARNLSVRL------GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD 55
Query: 71 SGQVLFKGKKIKD-PPKDIS----VVFQTFAL-FPWLTVLENVELGLKAKGIDKEERRKR 124
SG+V G+ + D P +++ V+ Q +L FP+ TV E V +G G+ + E
Sbjct: 56 SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF-TVEEVVAMGRAPHGLSRAEDDAL 114
Query: 125 ALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFV------VFPSLLLMDEPFSALDVL 178
+A+ + L ++SGG QRV AR P LL+DEP SALD+
Sbjct: 115 VAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLA 174
Query: 179 TAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIA-----EEVL 233
++ L E L ++++V H++ A DR+++ GR+ EVL
Sbjct: 175 HQHHVLRLARQLAHERGL---AVIVVLHDLNLAARYADRIVLLHQ--GRLVADGTPAEVL 229
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 118 bits (298), Expect = 3e-27
Identities = 78/198 (39%), Positives = 115/198 (58%), Gaps = 12/198 (6%)
Query: 37 NFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKK-IKDPP--KDISVVFQ 93
+ V GE V +LG SG+GKSTLL +IAG ++P+SG + G+ PP + +S++FQ
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 94 TFALFPWLTVLENVELGLKAKGIDKEERRKRALSAI-DLIGLDGFESAHTTEISGGMLQR 152
LF LTV +N+ LGL G+ ++ L AI +G++ + ++SGG QR
Sbjct: 79 ENNLFSHLTVAQNIGLGL-NPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQR 137
Query: 153 VGFARAFVVFPSLLLMDEPFSALD-VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEA 211
V AR V +LL+DEPFSALD L E L T + + E +L ++LMV+H++E+A
Sbjct: 138 VALARCLVREQPILLLDEPFSALDPALRQEML-TLVSQVCQERQL---TLLMVSHSLEDA 193
Query: 212 VLMCDRVLVFSSNPGRIA 229
+ R LV + GRIA
Sbjct: 194 ARIAPRSLVVAD--GRIA 209
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export.
Length = 694
Score = 117 bits (295), Expect = 7e-27
Identities = 76/214 (35%), Positives = 112/214 (52%), Gaps = 33/214 (15%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK--DPP---K 86
LD V+ + GE V ++GR GSGKSTLL+++ GL P+ G VL G I+ DP +
Sbjct: 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRR 539
Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTT--- 143
+I V Q LF + T+ +N+ LG A D EE L A +L G+ F H
Sbjct: 540 NIGYVPQDPRLF-YGTLRDNIALG--APYADDEE----ILRAAELAGVTEFVRRHPDGLD 592
Query: 144 --------EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195
+SGG Q V ARA + P +LL+DEP SA+D + E + L W+ G+
Sbjct: 593 MQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKR-WLAGK 651
Query: 196 LPIESMLMVTHNIEEAVL-MCDRVLVFSSNPGRI 228
++++VTH ++L + DR++V + GRI
Sbjct: 652 ----TLVLVTHRT--SLLDLVDRIIVMDN--GRI 677
>gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 115 bits (290), Expect = 2e-26
Identities = 82/243 (33%), Positives = 122/243 (50%), Gaps = 25/243 (10%)
Query: 19 QSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG 78
L + VL+ V+ ++ SGE V LLGRSG GKSTL R++ GL SPS G V ++G
Sbjct: 14 AHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRG 73
Query: 79 KKI--------KDPPKDISVVFQTF--ALFPWLTVLENVELGLK-AKGIDKEERRKRALS 127
+ + K +DI +VFQ A+ P TV E + L+ +DK ER RA
Sbjct: 74 EPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASE 133
Query: 128 AIDLIGLD-GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186
+ + LD ++SGG LQRV ARA V P LL++DE S LD++ L+
Sbjct: 134 MLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLV----LQAG 189
Query: 187 LIDLW--IEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV----LISIPHPR 240
+I L ++ + + L +TH++ C RV+V + G+I E ++ P
Sbjct: 190 VIRLLKKLQQQFGT-ACLFITHDLRLVERFCQRVMVMDN--GQIVETQPVGDKLTFSSPA 246
Query: 241 NRL 243
R+
Sbjct: 247 GRV 249
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 114 bits (287), Expect = 5e-26
Identities = 72/210 (34%), Positives = 114/210 (54%), Gaps = 14/210 (6%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
LL+ ++C+ + + + VL V+F++ GE++ ++G SGSGKSTLL ++ GL +P+
Sbjct: 5 LLQCDNLCKRYQEGSVQTD--VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT 62
Query: 71 SGQVLFKGK---------KIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEER 121
SG V+F G+ K + + + ++Q L P T LENV + L E
Sbjct: 63 SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEI 122
Query: 122 RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAE 181
RAL + +GL+ + +E+SGG QRV ARA V P L+L DEP LD A+
Sbjct: 123 NSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNAD 182
Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEA 211
++ L +L RL + L+VTH+++ A
Sbjct: 183 SIFQLLGEL---NRLQGTAFLVVTHDLQLA 209
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 114 bits (287), Expect = 5e-26
Identities = 58/172 (33%), Positives = 90/172 (52%), Gaps = 15/172 (8%)
Query: 20 SFSLKKIS---GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF 76
S L I+ G L + + GE + LLG SG+GKS+LLR++ L P SG +
Sbjct: 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61
Query: 77 KG-----------KKIKDPPKDISVVFQTFALFPWLTVLEN-VELGLKAKGIDKEERRKR 124
G K I++ +++ +VFQ + L+P LTV +N +E + G+ K++ R
Sbjct: 62 AGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALAR 121
Query: 125 ALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176
A ++ + L + +SGG QRV ARA ++ P +LL DEP +ALD
Sbjct: 122 AEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173
>gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters.
Length = 247
Score = 113 bits (285), Expect = 8e-26
Identities = 71/241 (29%), Positives = 115/241 (47%), Gaps = 37/241 (15%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS-- 68
+EI+++ + G L +N ++ ++ L+G SG GKSTLLR + +
Sbjct: 1 AIEIENLNLFY------GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLV 54
Query: 69 PS---SGQVLFKGKKIKDPPKD-------ISVVFQTFALFPWLTVLENVELGLKAKGI-D 117
P G+VLF G+ I D D + +VFQ FP +++ +N+ G + GI D
Sbjct: 55 PGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKD 113
Query: 118 KEERRKRALSAIDLIGL--DGFESAHT--TEISGGMLQRVGFARAFVVFPSLLLMDEPFS 173
K+E + ++ L + + H +SGG QR+ ARA V P +LL+DEP S
Sbjct: 114 KKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTS 173
Query: 174 ALD---VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
ALD E L +L + ++++VTHN+++A + DR F G + E
Sbjct: 174 ALDPIATGKIEELIQELKKKY--------TIVIVTHNMQQAARISDRTAFFYD--GELVE 223
Query: 231 E 231
Sbjct: 224 Y 224
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 112 bits (281), Expect = 2e-25
Identities = 65/188 (34%), Positives = 101/188 (53%), Gaps = 18/188 (9%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87
VL +N ++ GEIV L G SGSGK+TLL +I GL S G + G+++ +
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 88 ----ISVVFQTFALFPWLTVLENVELGLK-AKGIDKEERRKRALSAIDLIGLDGFESAHT 142
I +FQ L +LT +NV++ L+ + +E R+RA + ++ +GL +
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP 139
Query: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE--- 199
+SGG QRV ARA V P L+L DEP +ALD + D+++L +L E
Sbjct: 140 HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGR----DVVELM--QKLAREQGC 193
Query: 200 SMLMVTHN 207
++L+VTH+
Sbjct: 194 TILIVTHD 201
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown.
Length = 223
Score = 111 bits (279), Expect = 4e-25
Identities = 74/217 (34%), Positives = 106/217 (48%), Gaps = 22/217 (10%)
Query: 38 FNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFAL 97
+ GE++GLLG +G+GK+TLLR I GL+ P+ G V G + I V Q
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHE- 59
Query: 98 FPW---LTVLENVELGLKAKGIDKEERRKRA-----LSAIDLIGLDGFESAHTTEISGGM 149
F W ++V V G + I R A A+ +GL E+SGG
Sbjct: 60 FAWDFPISVAHTVMSG-RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQ 118
Query: 150 LQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIE 209
QRV ARA PS+LL+DEPF+ LD+ T E L I+L G ++LM TH++
Sbjct: 119 RQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAG----TAILMTTHDLA 174
Query: 210 EAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSPE 246
+A+ CDRV++ + GR+ I+ P+ P
Sbjct: 175 QAMATCDRVVLLN---GRV-----IADGTPQQLQDPA 203
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 110 bits (276), Expect = 1e-24
Identities = 75/257 (29%), Positives = 125/257 (48%), Gaps = 25/257 (9%)
Query: 11 LLEIQDICQSFSLKKISGN--LLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68
LLE++DI +S+ SG + VL ++ ++ +GE+V ++G SGSGKSTL+ I+ L
Sbjct: 4 LLELKDIRRSYP----SGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK 59
Query: 69 PSSGQVLFKGKKIKDPPKD---------ISVVFQTFALFPWLTVLENVELGLKAKGIDKE 119
P+SG G+ + D +FQ + L LT +NVE+ G++++
Sbjct: 60 PTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERK 119
Query: 120 ERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179
+R RA + +GL+ +++SGG QRV ARA + ++L DEP ALD +
Sbjct: 120 QRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179
Query: 180 AENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFS-----SNPGRIAEEVLI 234
E + L L G ++++VTH+ + A +RV+ NP + +
Sbjct: 180 GEEVMAILHQLRDRG----HTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEKVNVA 234
Query: 235 SIPHPRNRLSPEFRQIV 251
P + +RQ V
Sbjct: 235 GGTEPVVNTASGWRQFV 251
>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit.
Unfortunately, the gene symbol nomenclature adopted
based on this operon in B. subtilis assigns cydC to the
third gene in the operon where this gene is actually
homologous to the E. coli cydD gene. We have chosen to
name all homologs in this family in accordance with the
precedence of publication of the E. coli name, CydD.
Length = 529
Score = 109 bits (274), Expect = 2e-24
Identities = 74/205 (36%), Positives = 102/205 (49%), Gaps = 29/205 (14%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87
L V+F V GE V L+G SG+GKSTLL ++ G V P+ G + G + D D
Sbjct: 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396
Query: 88 -ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESA------ 140
I+ V Q LF T+ EN+ L D E RR A++ GLD F +A
Sbjct: 397 QIAWVPQHPFLFAG-TIAENIRLARPD-ASDAEIRR-----ALERAGLDEFVAALPQGLD 449
Query: 141 -----HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195
+SGG QR+ ARAF+ LLL+DEP + LD T E L T+ + +GR
Sbjct: 450 TLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET-EALVTEALRALAQGR 508
Query: 196 LPIESMLMVTHNIEEAVLMCDRVLV 220
++L+VTH + A DR++V
Sbjct: 509 ----TVLLVTHRLALAERA-DRIVV 528
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 108 bits (272), Expect = 2e-24
Identities = 82/230 (35%), Positives = 121/230 (52%), Gaps = 28/230 (12%)
Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI- 81
L K G VL V+ ++G+++ ++G SGSGKST LR I L PS G ++ G+ I
Sbjct: 11 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTIN 70
Query: 82 --KDPPKDISV---------------VFQTFALFPWLTVLENV-ELGLKAKGIDKEERRK 123
+D + V VFQ F L+ +TVLENV E ++ G+ K+E R+
Sbjct: 71 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE 130
Query: 124 RALSAIDLIGLDG-FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV-LTAE 181
RA+ + +G+D + + +SGG QRV ARA + P +LL DEP SALD L E
Sbjct: 131 RAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGE 190
Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
LR + L EG+ +M++VTH + A + V+ + G+I EE
Sbjct: 191 VLRI-MQQLAEEGK----TMVVVTHEMGFARHVSSHVIFL--HQGKIEEE 233
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux.
Length = 190
Score = 107 bits (268), Expect = 8e-24
Identities = 63/192 (32%), Positives = 95/192 (49%), Gaps = 20/192 (10%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87
VL +NF GE++ LLG +G+GKSTLL + GL+ P SG VL G+ + K
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLER 66
Query: 88 ---ISVVFQT-----FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFES 139
+ +VFQ FA V ++V G G+ + E +R A+ +G G
Sbjct: 67 RQRVGLVFQDPDDQLFA----ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE 122
Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199
T +SGG +RV A A + P +LL+DEP + LD E + L L EG
Sbjct: 123 RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGM---- 178
Query: 200 SMLMVTHNIEEA 211
++++ TH+++ A
Sbjct: 179 TVVISTHDVDLA 190
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 106 bits (266), Expect = 1e-23
Identities = 75/199 (37%), Positives = 102/199 (51%), Gaps = 13/199 (6%)
Query: 30 LLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-------- 81
L +L V V GE + L+G SGSGKSTLL I+AGL SSG+V G+ +
Sbjct: 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEAR 82
Query: 82 -KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESA 140
K K + VFQ+F L P L LENVEL +G + R A + ++ +GL
Sbjct: 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDH 142
Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200
++SGG QRV ARAF P +L DEP LD T + + L L R +
Sbjct: 143 LPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSL---NREHGTT 199
Query: 201 MLMVTHNIEEAVLMCDRVL 219
+++VTH+++ A CDR L
Sbjct: 200 LILVTHDLQLAA-RCDRRL 217
>gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 106 bits (266), Expect = 1e-23
Identities = 66/208 (31%), Positives = 115/208 (55%), Gaps = 17/208 (8%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF-------KGKKIKDPP 85
LD VN + GE VGL+G +GSGKSTL++ + GL+ P+SG+++ K K+ D
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 86 KDISVVFQ--TFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLD--GFESAH 141
K + +VFQ + LF T+ +++ G G+ +EE R A++++GLD ++
Sbjct: 83 KKVGLVFQYPEYQLFE-ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKS 141
Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESM 201
E+SGG +RV A + P +L++DEP + LD + + + +L E + I
Sbjct: 142 PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTI--- 198
Query: 202 LMVTHNIEEAVLMCDRVLVFSSNPGRIA 229
++V+H++E+ + DR++V N G+
Sbjct: 199 ILVSHSMEDVAKLADRIIVM--NKGKCE 224
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 105 bits (263), Expect = 3e-23
Identities = 67/184 (36%), Positives = 101/184 (54%), Gaps = 12/184 (6%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KDPP-- 85
L V F++ GE+ L G SG+GKSTLL++I G+ PS+G++ F G I ++ P
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 86 -KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTE 144
+ I ++FQ L TV +NV + L G ++ R+R +A+D +GL +
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQ 137
Query: 145 ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMV 204
+SGG QRVG ARA V P++LL DEP LD + L ++ L+ E ++LM
Sbjct: 138 LSGGEQQRVGIARAVVNKPAVLLADEPTGNLD----DALSEGILRLFEEFNRVGVTVLMA 193
Query: 205 THNI 208
TH+I
Sbjct: 194 THDI 197
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 105 bits (263), Expect = 3e-23
Identities = 78/212 (36%), Positives = 112/212 (52%), Gaps = 22/212 (10%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87
L +NF GE+V LLG +G+GKSTL G++ P+SG+VL KG+ IK K
Sbjct: 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV 76
Query: 88 ---ISVVFQT-----FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFES 139
+ +VFQ FA P TV E+V G G+ KEE KR A+ +G++GFE+
Sbjct: 77 RKTVGIVFQNPDDQLFA--P--TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN 132
Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199
+SGG +RV A + P ++++DEP S LD + A + L DL EG I
Sbjct: 133 KPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIII 192
Query: 200 SMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
S TH+++ + D+V V S G+I +E
Sbjct: 193 S----THDVDLVPVYADKVYVMSD--GKIIKE 218
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 104 bits (261), Expect = 5e-23
Identities = 69/195 (35%), Positives = 109/195 (55%), Gaps = 12/195 (6%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-----DPPKD 87
L+ V+F+V GE + ++G +GSGKST +R+I GL+ SGQ++ G + D
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82
Query: 88 ISVVFQT-FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEIS 146
I +VFQ F TV ++V GL+ KGI EE ++R A++L+G+ F+ +S
Sbjct: 83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLS 142
Query: 147 GGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE-SMLMVT 205
GG QRV A A + P ++++DE S LD R +LI R + +++ +T
Sbjct: 143 GGQKQRVAIAGAVAMRPKIIILDEATSMLD----PEGRLELIKTIKGIRDDYQMTVISIT 198
Query: 206 HNIEEAVLMCDRVLV 220
H+++E V + DRVLV
Sbjct: 199 HDLDE-VALSDRVLV 212
>gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 103 bits (258), Expect = 1e-22
Identities = 57/178 (32%), Positives = 94/178 (52%), Gaps = 15/178 (8%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
L++++ + SF+ GN + D ++ V G+I ++G SG GK+TLLR+I G ++P
Sbjct: 7 LVDMRGV--SFT----RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD 60
Query: 71 SGQVLFKGKKIK--------DPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEE-R 121
G++LF G+ I K +S++FQ+ ALF + V +NV L+
Sbjct: 61 HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLL 120
Query: 122 RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179
+ ++ +GL G +E+SGGM +R ARA + P L++ DEPF D +T
Sbjct: 121 HSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT 178
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 102 bits (256), Expect = 2e-22
Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 11/174 (6%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
LE +++ + F G ++ ++ V + GLLG +G+GKSTLL++I G++ P+S
Sbjct: 1 LETKNLSKRF------GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTS 54
Query: 72 GQVLFKGKK-IKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAID 130
G+++F G + I + ++ L+ LT EN+++ G+ R ++
Sbjct: 55 GEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDS----RIDEVLN 110
Query: 131 LIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184
++ L + S GM QR+G A A + P LL++DEP + LD + + LR
Sbjct: 111 IVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELR 164
>gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 102 bits (256), Expect = 2e-22
Identities = 75/217 (34%), Positives = 115/217 (52%), Gaps = 19/217 (8%)
Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82
++K G+ LV+D ++F+V GE GLLG +G+GK+T LR++ GL P +G + G+ +
Sbjct: 13 VEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVP 72
Query: 83 DPPKD----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFE 138
+ + VV Q L P TV EN+ + + G+ R ++ L+
Sbjct: 73 SRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA 132
Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV----LTAENLRTDLIDLWIEG 194
A E+SGGM +R+ ARA V P +L++DEP + LD L E LR+ L G
Sbjct: 133 DAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRS----LLARG 188
Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGR-IAE 230
+ ++L+ TH +EEA +CDR+ V GR IAE
Sbjct: 189 K----TILLTTHFMEEAERLCDRLCVIEE--GRKIAE 219
>gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 102 bits (255), Expect = 2e-22
Identities = 75/218 (34%), Positives = 117/218 (53%), Gaps = 19/218 (8%)
Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81
+ K G+ V++ ++F V+SGE GLLG +G+GKST+ R+I G+ SP +G++ G +
Sbjct: 46 GVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPV 105
Query: 82 KDPPK----DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGF 137
+ I VV Q L TV EN+ + + G+ E S ++ L+
Sbjct: 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK 165
Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV----LTAENLRTDLIDLWIE 193
A +++SGGM +R+ ARA + P LL++DEP + LD L E LR+ L
Sbjct: 166 ADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRS----LLAR 221
Query: 194 GRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGR-IAE 230
G+ ++L+ TH +EEA +CDR+ V + GR IAE
Sbjct: 222 GK----TILLTTHFMEEAERLCDRLCVLEA--GRKIAE 253
>gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 101 bits (253), Expect = 5e-22
Identities = 72/233 (30%), Positives = 124/233 (53%), Gaps = 32/233 (13%)
Query: 11 LLEIQDICQSFS-----LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKST----LLR 61
LL+++ + +F LK+ + +V+ ++F + GE +GL+G SGSGKST LLR
Sbjct: 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLR 334
Query: 62 IIAGLVSPSSGQVLFKG--------KKIKDPPKDISVVFQ--TFALFPWLTVLENVELGL 111
+I S G++ F G +++ I VVFQ +L P L VL+ +E GL
Sbjct: 335 LIN-----SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGL 389
Query: 112 KA--KGIDKEERRKRALSAIDLIGLDGFESAH--TTEISGGMLQRVGFARAFVVFPSLLL 167
+ + +R ++ ++ ++ +GLD E+ H E SGG QR+ ARA ++ PSL++
Sbjct: 390 RVHQPTLSAAQREQQVIAVMEEVGLDP-ETRHRYPAEFSGGQRQRIAIARALILKPSLII 448
Query: 168 MDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220
+DEP S+LD + L L + +L + L ++H++ +C +V+V
Sbjct: 449 LDEPTSSLDKTVQAQILALLKSLQQKHQL---AYLFISHDLHVVRALCHQVIV 498
Score = 72.8 bits (179), Expect = 2e-13
Identities = 77/261 (29%), Positives = 124/261 (47%), Gaps = 40/261 (15%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKS-TLLRIIAGLVSP 69
LL I+++ S + ++ V++ V+ + +GE + L+G SGSGKS T L I+ L SP
Sbjct: 5 LLAIENL--SVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSP 62
Query: 70 S----SGQVLFKGKKIKDPPK---------DISVVFQ--TFALFPWLTVLENVELGLKA- 113
SG + F G+ + + I+++FQ +L P L +E L
Sbjct: 63 PVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNP----LHTLEKQLYEV 118
Query: 114 ----KGIDKEERRKRALSAIDLIGL---DGFESAHTTEISGGMLQRVGFARAFVVFPSLL 166
+G+ +E R L+ +D +G+ + + ++SGG QRV A A + P LL
Sbjct: 119 LSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELL 178
Query: 167 LMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPG 226
+ DEP +ALDV + L +L E + +L +THN+ + DRV V + G
Sbjct: 179 IADEPTTALDVSVQAQILQLLRELQQELNM---GLLFITHNLSIVRKLADRVAVMQN--G 233
Query: 227 RIAEE----VLISIP-HPRNR 242
R E+ L S P HP +
Sbjct: 234 RCVEQNRAATLFSAPTHPYTQ 254
>gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 101 bits (252), Expect = 5e-22
Identities = 66/203 (32%), Positives = 107/203 (52%), Gaps = 23/203 (11%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI---------KD 83
LD ++F + G V L+G +GSGKSTL++ L+ PSSG + G I K
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 84 PPKDISVVFQTFALFPWL-----TVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFE 138
K +S+VFQ FP TVL++VE G K G ++E +++AL + +GL
Sbjct: 83 LRKKVSLVFQ----FPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL 138
Query: 139 SAHTT-EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197
+ + E+SGG ++RV A P +L +DEP + LD R +++ L+ + +
Sbjct: 139 ISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEG----RKEMMQLFKDYQKA 194
Query: 198 IESMLMVTHNIEEAVLMCDRVLV 220
++++VTHN+++ D VLV
Sbjct: 195 GHTVILVTHNMDDVAEYADDVLV 217
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 100 bits (250), Expect = 8e-22
Identities = 76/230 (33%), Positives = 119/230 (51%), Gaps = 33/230 (14%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRII--AGLVS 68
+L++ D+ ++ KK L+ V+ + EI L+G SGSGKSTLLR I ++
Sbjct: 5 ILQVSDLSVYYNKKK------ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN 58
Query: 69 PS---SGQVLFKGKKIKDPP-------KDISVVFQTFALFPWLTVLENVELGLKAKGI-D 117
P +G +++ G I P K+I +VFQ FP +++ ENV GL+ KGI D
Sbjct: 59 PEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKD 117
Query: 118 KE------ERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEP 171
K+ E+ + S D + +SA +SGG QRV AR P ++L+DEP
Sbjct: 118 KQVLDEAVEKSLKGASIWDEVKDRLHDSA--LGLSGGQQQRVCIARVLATSPKIILLDEP 175
Query: 172 FSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
SALD ++A + L+ L + +ML+VT ++++A + DR F
Sbjct: 176 TSALDPISAGKIEETLLGLKDD-----YTMLLVTRSMQQASRISDRTGFF 220
>gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification.
Length = 236
Score = 100 bits (250), Expect = 1e-21
Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 16/221 (7%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
LE+ + ++ ++ LD V+F V GE V LLG +G+GKSTL ++ L
Sbjct: 2 LEVAGLSFAYGARR------ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQE 55
Query: 72 GQVLFKGKKIKDPPKD----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALS 127
GQ+ G ++ P+ + VVFQ L L+V +N+ G+ + E R+R +
Sbjct: 56 GQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAA 115
Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187
+ +GL E++GG +RV ARA + P+LLL+DEP LD + + +
Sbjct: 116 LLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHV 175
Query: 188 IDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228
L + L S+L TH ++E + DR++V + GR+
Sbjct: 176 RALCRDQGL---SVLWATHLVDE-IEADDRLVVL--HRGRV 210
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 99.4 bits (248), Expect = 2e-21
Identities = 70/228 (30%), Positives = 114/228 (50%), Gaps = 19/228 (8%)
Query: 11 LLEIQDICQSFSLKKISG-NLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP 69
LLE++D+ ++F+L + G L VL V+ V++GE V L G SG+GKSTLL+ + P
Sbjct: 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP 60
Query: 70 SSGQVLFK--GKKI---KDPP--------KDISVVFQTFALFPWLTVLENVELGLKAKGI 116
SG++L + G + + P K I V Q + P ++ LE V L +G+
Sbjct: 61 DSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGV 120
Query: 117 DKEERRKRALSAIDLIGLDG-FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175
+E R RA + + + SGG QRV AR F+ +LL+DEP ++L
Sbjct: 121 PREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASL 180
Query: 176 DVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSS 223
D R +++L E + +++ + H+ E L+ DRV+ +
Sbjct: 181 D----AANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVTP 224
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 99.2 bits (248), Expect = 2e-21
Identities = 60/198 (30%), Positives = 105/198 (53%), Gaps = 13/198 (6%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDP-PKD---- 87
LD ++F+ +G++ L+G +G+GKSTLL+I++G P +G +L G++++
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 88 -ISVVFQTFALFPWLTVLENVELG-LKAKG--IDKEERRKRALSAIDLIGLDGFESAHTT 143
+++++Q L P +TV EN+ LG L KG +++ A ++ +G+D
Sbjct: 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLK 139
Query: 144 EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLM 203
+S G Q V A+A ++ DEP S+L E L + +L EGR+ +L
Sbjct: 140 YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRV----ILY 195
Query: 204 VTHNIEEAVLMCDRVLVF 221
V+H +EE +CD + VF
Sbjct: 196 VSHRMEEIFALCDAITVF 213
Score = 58.8 bits (143), Expect = 3e-09
Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 48/227 (21%)
Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-DPPKDISVVFQT 94
++F+V +GEIVGL G G+G+S L++++ G ++GQV GK I P+D +
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRD--AIRAG 329
Query: 95 FAL----------FPWLTVLENVELG-----LKAKGI-------DKEERRKRAL-----S 127
L P +V +N+ + L+A + + +R R+L S
Sbjct: 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPS 389
Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187
LI +SGG Q+ R ++L+DEP +DV A++ ++
Sbjct: 390 REQLIMN----------LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDV-GAKHEIYNV 438
Query: 188 I-DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVL 233
I +L +G ++L V+ ++ E + + DR++V GRIA E+
Sbjct: 439 IYELAAQGV----AVLFVSSDLPEVLGVADRIVVMRE--GRIAGELA 479
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 99.0 bits (247), Expect = 2e-21
Identities = 72/230 (31%), Positives = 113/230 (49%), Gaps = 23/230 (10%)
Query: 11 LLEIQDICQSFSLKKISG-------NLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRII 63
LLE+ D+ F +K L +D V + GE +G++G SG GKST R I
Sbjct: 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAI 67
Query: 64 AGLVSPSSGQVLFKGK--------KIKDPPKDISVVFQT--FALFPWLTVLENVELGLKA 113
GLV + G+V + GK + + DI ++FQ +L P +T+ E + L+
Sbjct: 68 IGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRT 127
Query: 114 --KGIDKEERRKRALSAIDLIGL-DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDE 170
+ ++E + R + + +GL + + E SGG QR+G ARA ++ P L++ DE
Sbjct: 128 YHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDE 187
Query: 171 PFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220
P SALDV + L L E L S++ + H++ + DRVLV
Sbjct: 188 PVSALDVSIQAQVVNLLQQLQREMGL---SLIFIAHDLAVVKHISDRVLV 234
>gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 99.2 bits (248), Expect = 2e-21
Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 28/191 (14%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDP--- 84
G ++ ++F +++GE + L G +GSGK+TLLR+IAGL+ P++G + G I DP
Sbjct: 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVA 72
Query: 85 -------PKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGF 137
++ A+ P LTV EN+E G +A++ +GL
Sbjct: 73 EACHYLGHRN--------AMKPALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPL 120
Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197
+S G +RV AR V + ++DEP +ALD A L +L I L
Sbjct: 121 AHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA-AAVALFAEL----IRAHLA 175
Query: 198 IESM-LMVTHN 207
+ + TH
Sbjct: 176 QGGIVIAATHI 186
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 98.3 bits (245), Expect = 3e-21
Identities = 64/211 (30%), Positives = 93/211 (44%), Gaps = 15/211 (7%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPK- 86
G L++D V+ G + GLLG +GSGKSTLLR++AG + P +G V G + +
Sbjct: 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRR 71
Query: 87 ----DISVVFQTFALFPWLTVLENVELG----LKAKGIDKEERRKRALSAIDLIGLDGFE 138
+++V Q LTV + V LG D A+ L
Sbjct: 72 ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA 131
Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198
+ +SGG QRV ARA P LLL+DEP + LDV + +L G +
Sbjct: 132 DRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVV 191
Query: 199 ESMLMVTHNIEEAVLMCDRVLVFSSNPGRIA 229
++ H++ A CD V+V GR+
Sbjct: 192 AAL----HDLNLAASYCDHVVVLDG--GRVV 216
>gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 98.1 bits (245), Expect = 4e-21
Identities = 61/221 (27%), Positives = 115/221 (52%), Gaps = 14/221 (6%)
Query: 8 DNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67
+ +++++++ S+ + L V+F ++ GE V +LG +GSGKST+ +I+ GL+
Sbjct: 4 KSVMIKVENVSFSYP----NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL 59
Query: 68 SPSSGQVLFKGKKI-----KDPPKDISVVFQT-FALFPWLTVLENVELGLKAKGIDKEER 121
P SG++ G I K+ K I ++FQ F TV +++ GL+ K + ++
Sbjct: 60 KPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKM 119
Query: 122 RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAE 181
+ +G++ + +SGG QRV A + P +++ DE S LD
Sbjct: 120 KDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKR 179
Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFS 222
++ ++DL + + S +TH+++EA+L D+V+VFS
Sbjct: 180 EIKKIMVDLRKTRKKTLIS---ITHDMDEAIL-ADKVIVFS 216
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 97.6 bits (244), Expect = 6e-21
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 18/195 (9%)
Query: 35 KVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSG------QVLFK-GKKIKDPP-- 85
VN + + I + GRSG+GK++L+ I+GL P G +VLF K I PP
Sbjct: 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75
Query: 86 KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEI 145
+ I VFQ LFP V N+ G+ + + L+G++ + +
Sbjct: 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKS--MVAQ----FDKIVALLGIEPLLDRYPGSL 129
Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVT 205
SGG QRV RA + P LLLMDEP ++LD+ L L L E +PI L V+
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPI---LYVS 186
Query: 206 HNIEEAVLMCDRVLV 220
H+++E + + DRV+V
Sbjct: 187 HSLDEILRLADRVVV 201
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This model does not recognize the highly
divergent NodI from Azorhizobium caulinodans.
Length = 303
Score = 97.3 bits (242), Expect = 7e-21
Identities = 71/216 (32%), Positives = 115/216 (53%), Gaps = 17/216 (7%)
Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82
+ K G+ +V++ ++F ++ GE GLLG +G+GKST+ R++ G++SP G++ G+ +
Sbjct: 10 VSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVP 69
Query: 83 DPPK----DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFE 138
+ I VV Q L P TV EN+ + + G+ E S ++ L+
Sbjct: 70 SRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA 129
Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV----LTAENLRTDLIDLWIEG 194
+SGGM +R+ ARA + P LL++DEP + LD L E LR+ L G
Sbjct: 130 DVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRS----LLARG 185
Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
+ ++L+ TH +EEA +CDR+ V S +IAE
Sbjct: 186 K----TILLTTHFMEEAERLCDRLCVLESGR-KIAE 216
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous.
Length = 230
Score = 97.1 bits (242), Expect = 8e-21
Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 18/214 (8%)
Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKST----LLRIIAGLVSPSSGQVLFKGKKI---KD 83
LV D +N ++ GE++ L+G SGSGKS +L ++ ++ +SG++L G+ +
Sbjct: 1 LVQD-LNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSI 59
Query: 84 PPKDISVVFQT--FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFE--- 138
+ I+ + Q A P T+ + L++ G ++ R L A++ +GL E
Sbjct: 60 RGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVL 119
Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198
+ ++SGGMLQRV A A ++ P L+ DEP + LDV+ + L+ +
Sbjct: 120 KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARV-LKLLRELRQLFGT- 177
Query: 199 ESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV 232
+L++TH++ + D V V GRI E
Sbjct: 178 -GILLITHDLGVVARIADEVAVMDD--GRIVERG 208
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 97.1 bits (242), Expect = 9e-21
Identities = 80/252 (31%), Positives = 129/252 (51%), Gaps = 30/252 (11%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
LL+++D+ +FS G++ ++ +NF++ +GE +G++G SGSGKS + GL++ +
Sbjct: 12 LLDVKDLRVTFSTP--DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAAN 69
Query: 71 ---SGQVLFKGKKIKDPP---------KDISVVFQ--TFALFPWLTVLENV-ELGLKAKG 115
G F G++I + P + IS++FQ +L P++ V E + E+ + KG
Sbjct: 70 GRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKG 129
Query: 116 IDKE---ERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPF 172
+ K E R L A+ + + E SGGM QRV A A + P LL+ DEP
Sbjct: 130 MSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPT 189
Query: 173 SALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI---- 228
+ALDV + T L +L E I +M+TH++ +CD+VLV + GR
Sbjct: 190 TALDVTVQAQIMTLLNELKREFNTAI---IMITHDLGVVAGICDKVLVMYA--GRTMEYG 244
Query: 229 -AEEVLISIPHP 239
A +V HP
Sbjct: 245 NARDVFYQPSHP 256
>gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 230
Score = 96.8 bits (242), Expect = 9e-21
Identities = 60/171 (35%), Positives = 84/171 (49%), Gaps = 24/171 (14%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
LE+ ++ + G +L V+ V GE+ +LGR+G GK+TLL+ + GL+ S
Sbjct: 1 LEVSNLNVYY------GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS 54
Query: 72 GQVLFKGKKI-KDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA 125
G + G+ I K PP I+ V Q +FP LTV EN+ GL A RR R
Sbjct: 55 GSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP-----RRSRK 109
Query: 126 LSAIDLI-----GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEP 171
+ D I L ++SGG Q++ ARA V P LLL+DEP
Sbjct: 110 I--PDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEP 158
>gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 529
Score = 96.7 bits (241), Expect = 1e-20
Identities = 63/191 (32%), Positives = 92/191 (48%), Gaps = 19/191 (9%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD 87
G+ VLD V+ ++ GE V +LG SGSGKSTLL ++ GL+ P G+V G + +
Sbjct: 346 GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDE 405
Query: 88 ISVVFQTFALFPWL---TVLENVELGLKAKGIDKEERRKRALSAI---DLI-----GLDG 136
+ FA L TV +N+ LG EE AL + D + GLD
Sbjct: 406 LRRRISVFAQDAHLFDTTVRDNLRLG--RPDATDEE-LWAALERVGLADWLRSLPDGLDT 462
Query: 137 FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL 196
+SGG QR+ ARA + +LL+DEP LD T L DL+ + G+
Sbjct: 463 VLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA-LSGKT 521
Query: 197 PIESMLMVTHN 207
++++TH+
Sbjct: 522 ----VVVITHH 528
>gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 96.4 bits (240), Expect = 1e-20
Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 16/205 (7%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-----DPPK 86
+L ++ G I ++G SG+GKSTL+++I L+ P+ G +L G IK D +
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRR 77
Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDG-FESAHTTEI 145
I +VFQ LF TV +N+E G KG E+ + ++GL+ + + +
Sbjct: 78 KIGMVFQQPHLFEG-TVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDVKNL 132
Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVT 205
SGG QRV AR P +LL+DEP SALD + E + ++ L + L + + +T
Sbjct: 133 SGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTV---IWIT 189
Query: 206 HNIEEAVLMCDRVLVFSSNPGRIAE 230
HN+E+A + D N G + E
Sbjct: 190 HNMEQAKRIGDYTAFL--NKGILVE 212
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 96.3 bits (240), Expect = 1e-20
Identities = 69/250 (27%), Positives = 124/250 (49%), Gaps = 42/250 (16%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
+++++I + F KK+ L LD V+ ++ GE + ++G++GSGK+T + + L+ P +
Sbjct: 3 IKVKNIVKIF-NKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 72 GQVLF-----------------------------KGKKIKDPPKDISVVFQTFA---LFP 99
G + + K KKIK+ + + VVFQ FA LF
Sbjct: 62 GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQ-FAEYQLFE 120
Query: 100 WLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLD-GFESAHTTEISGGMLQRVGFARA 158
T+ +++ G + G+ KEE +KRA I+L+GLD + E+SGG +RV A
Sbjct: 121 -QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGI 179
Query: 159 FVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRV 218
+ P L+ DEP + LD + + +L +G+ ++++VTH+++ + R
Sbjct: 180 LAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK----TIILVTHDLDNVLEWTKRT 235
Query: 219 LVFSSNPGRI 228
+ F G+I
Sbjct: 236 IFF--KDGKI 243
>gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 96.0 bits (239), Expect = 2e-20
Identities = 71/218 (32%), Positives = 108/218 (49%), Gaps = 39/218 (17%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL-----VSPSSGQVLFKGKKIK 82
G+ LD V+ ++ ++ ++G SG GKST LR I + + G++ F+GK +
Sbjct: 50 GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109
Query: 83 DPPKD-------ISVVFQTFALFPWLTVLENVELGLKAKGIDK------EERRKRAL--- 126
D D I +VFQ FP ++ +NV GLK +G D EE +RA
Sbjct: 110 DADVDPVALRRRIGMVFQKPNPFP-KSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWD 168
Query: 127 ---SAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL 183
+D GLD +SGG QR+ ARA P ++LMDEP SALD + +
Sbjct: 169 EVKDQLDSSGLD---------LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKI 219
Query: 184 RTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
DLI+ E ++++VTHN+++A + D+ VF
Sbjct: 220 E-DLIEELAEEY----TVVIVTHNMQQAARISDKTAVF 252
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 95.5 bits (238), Expect = 3e-20
Identities = 65/205 (31%), Positives = 108/205 (52%), Gaps = 12/205 (5%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-----DPPKD 87
L V+F+V GE V ++G +GSGKSTL +++ GL+ P +G + G + D +
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82
Query: 88 ISVVFQT-FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEIS 146
+ +VFQ F TV ++V GL+ G+ +EE +R A+ +G++ F + +S
Sbjct: 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLS 142
Query: 147 GGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTH 206
GG QRV A + P ++++DE S LD + + L + + ++L +TH
Sbjct: 143 GGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGI---TVLSITH 199
Query: 207 NIEEAVLMCDRVLVFSSNPGRIAEE 231
+++EA DRV+V N G I EE
Sbjct: 200 DLDEA-AQADRVIVM--NKGEILEE 221
>gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 93.8 bits (233), Expect = 8e-20
Identities = 72/249 (28%), Positives = 121/249 (48%), Gaps = 48/249 (19%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
+++ D+ F G+ VLD V+ +V G +VGL+G +G+GK+TLLR I G ++P++
Sbjct: 4 IDVSDLSVEF------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA 57
Query: 72 GQVLFKG------------KKIKDPPKDISVVFQTFALFPWLTVLENVELG----LKAKG 115
G VL G +++ P+D S+ F+ V + VE+G
Sbjct: 58 GTVLVAGDDVEALSARAASRRVASVPQDTSLSFE-------FDVRQVVEMGRTPHRSRFD 110
Query: 116 IDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175
E R A++ G+ F T +SGG QRV ARA +LL+DEP ++L
Sbjct: 111 TWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASL 170
Query: 176 D----VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI--- 228
D V T E +R L+D +G+ + ++ H+++ A CD +++ + GR+
Sbjct: 171 DINHQVRTLELVR-RLVD---DGKTAVAAI----HDLDLAARYCDELVLLAD--GRVRAA 220
Query: 229 --AEEVLIS 235
+VL +
Sbjct: 221 GPPADVLTA 229
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 93.7 bits (233), Expect = 8e-20
Identities = 69/234 (29%), Positives = 113/234 (48%), Gaps = 30/234 (12%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
L+E +D+C S+S G+ L+ +NF + ++G +G+GKSTL R G++ P+
Sbjct: 3 LIETRDLCYSYS-----GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT 57
Query: 71 SGQVLFKG-----KKIKDPPKDISVVFQT-----FALFPWLTVLENVELGLKAKGIDKEE 120
SG VL +G + I++ K + +VFQ F+ TV +++ G G+D+E
Sbjct: 58 SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFS----PTVEQDIAFGPINLGLDEET 113
Query: 121 RRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180
R SA+ ++GL+ +SGG +RV A + P +L++DEP + LD
Sbjct: 114 VAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQG- 172
Query: 181 ENLRTDLIDLWIEGRLPIESMLMV---THNIEEAVLMCDRVLVFSSNPGRIAEE 231
+LID LP + V TH ++ M D + V + GRI
Sbjct: 173 ---VKELIDFL--NDLPETYGMTVIFSTHQLDLVPEMADYIYVM--DKGRIVAY 219
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 93.4 bits (232), Expect = 9e-20
Identities = 66/221 (29%), Positives = 115/221 (52%), Gaps = 18/221 (8%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
+L+++++ ++S L +N N+ GE+ +LG +G+GKSTL + + G++ PS
Sbjct: 5 ILKVEELNYNYS-----DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS 59
Query: 71 SGQVLFKGKKIKDPPK-------DISVVFQT--FALFPWLTVLENVELGLKAKGIDKEER 121
SG++LF GK I K + +VFQ LF +V ++V G + ++E
Sbjct: 60 SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS-ASVYQDVSFGAVNLKLPEDEV 118
Query: 122 RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAE 181
RKR +A+ G++ + T +S G +RV A V+ P +L++DEP + LD +
Sbjct: 119 RKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178
Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFS 222
+ L+++ E L I ++ TH+I+ L CD V V
Sbjct: 179 EIMKLLVEMQKELGLTI---IIATHDIDIVPLYCDNVFVMK 216
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 93.2 bits (232), Expect = 1e-19
Identities = 72/231 (31%), Positives = 112/231 (48%), Gaps = 40/231 (17%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPSS---GQVLFKGKKIK 82
G+ ++ VN N+ + +G SG GKST+LR + + V P + G+VL G+ +
Sbjct: 15 GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLY 74
Query: 83 DPP-------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLD 135
P + I +VFQ FP +++ +NV GLK G R K+ L + L
Sbjct: 75 GPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG----VRNKKDLDELVEKSLR 130
Query: 136 GFESAHTTE---------ISGGMLQRVGFARAFVVFPSLLLMDEPFSALD---VLTAENL 183
G + + +SGG QR+ ARA V P +LLMDEP SALD L E+L
Sbjct: 131 GANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDL 190
Query: 184 RTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFS----SNPGRIAE 230
+L + ++++VTHN+++A + D+ F+ PGR+ E
Sbjct: 191 INELKQDY--------TIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 93.2 bits (232), Expect = 1e-19
Identities = 70/220 (31%), Positives = 106/220 (48%), Gaps = 41/220 (18%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPS---SGQVLFKGKKIK 82
G+ L K+N ++ ++ L+G SG GKST LR + + + PS G+VL G+ I
Sbjct: 14 GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIY 73
Query: 83 DPPKDI-------SVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLD 135
D+ +VFQ FP +++ +NV G + GI + K+ L I L
Sbjct: 74 KSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI----KDKKKLDEIVEKSLK 128
Query: 136 GF-----------ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD---VLTAE 181
G +SA +SGG QR+ ARA V P +LLMDEP SALD L E
Sbjct: 129 GAALWDEVKDRLKKSA--LGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIE 186
Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
L +L + ++++VTHN+++A + D+ F
Sbjct: 187 ELIQELKKDY--------TIVIVTHNMQQASRISDKTAFF 218
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 93.2 bits (232), Expect = 1e-19
Identities = 69/237 (29%), Positives = 117/237 (49%), Gaps = 30/237 (12%)
Query: 6 IKDNR-LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA 64
+++N LL++Q++ KI L+ ++F++ +GE + G SG GKSTLL+I+A
Sbjct: 1 MQENSPLLQLQNVGYLAGDAKI------LNNISFSLRAGEFKLITGPSGCGKSTLLKIVA 54
Query: 65 GLVSPSSGQVLFKGKKIKD-PP----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKE 119
L+SP+SG +LF+G+ I P + +S QT LF TV +N+ + + +
Sbjct: 55 SLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQQPD 113
Query: 120 ERRKRALSAIDLIGLDGFESAHTT------EISGGMLQRVGFARAFVVFPSLLLMDEPFS 173
L+ F T E+SGG QR+ R P +LL+DE S
Sbjct: 114 PAIFLD-------DLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITS 166
Query: 174 ALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
ALD N+ ++I ++ + ++L VTH+ +E + D+V+ + G + E
Sbjct: 167 ALDESNKHNV-NEIIHRYVREQNI--AVLWVTHDKDE-INHADKVITLQPHAGEMQE 219
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 93.3 bits (232), Expect = 1e-19
Identities = 64/211 (30%), Positives = 112/211 (53%), Gaps = 11/211 (5%)
Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81
SL K+ G LD+V+F G IVG LG +G+GKST ++II G + P SG V G+ +
Sbjct: 7 SLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDV 66
Query: 82 KDPPKDISVVF----QTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGF 137
PK++ + L+ + V E ++ G+ + ++R I+L+GL
Sbjct: 67 LQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE 126
Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197
+ ++S G QRVG A+A + P +L++DEP + LD +R + ++ +
Sbjct: 127 QHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD---- 182
Query: 198 IESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228
+++++ TH ++E +CDRV++ N G+I
Sbjct: 183 -KTIILSTHIMQEVEAICDRVIII--NKGKI 210
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 93.2 bits (231), Expect = 1e-19
Identities = 72/208 (34%), Positives = 106/208 (50%), Gaps = 32/208 (15%)
Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPS---SGQVLFKGKKIKDPPKD--- 87
VN +V G + L+G SG GK+T LR I + ++P +G++L G+ I P D
Sbjct: 23 VNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82
Query: 88 ----ISVVFQTFALFPWLTVLENVELGLKAKGI-------DKEERRKRALSAIDLIGLDG 136
+ +VFQ FP ++V +NV GLK GI + ER R + D + D
Sbjct: 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK-DR 141
Query: 137 FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA---ENLRTDLIDLWIE 193
++ T +SGG QR+ ARA V P +LLMDEP SALD + E+L TDL
Sbjct: 142 LKTP-ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK---- 196
Query: 194 GRLPIESMLMVTHNIEEAVLMCDRVLVF 221
+ ++++VTHN+ +A + D F
Sbjct: 197 ----VTTIIIVTHNMHQAARVSDTTSFF 220
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2.
Length = 520
Score = 92.9 bits (231), Expect = 1e-19
Identities = 59/206 (28%), Positives = 113/206 (54%), Gaps = 27/206 (13%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFK-GKKIKDPPKD---- 87
+D V+ V GEI G++G SG+GK+TL +IIAG++ P+SG+V + G + D K
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359
Query: 88 -------ISVVFQTFALFPWLTVLENVELGLKAKGID--KEERRKRALSAIDLIGLDGFE 138
I ++ Q + L+P TVL+N+ +A G++ E R +A+ + ++G D +
Sbjct: 360 RGRAKRYIGILHQEYDLYPHRTVLDNLT---EAIGLELPDELARMKAVITLKMVGFDEEK 416
Query: 139 SA-----HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIE 193
+ + E+S G RV A+ + P ++++DEP +D +T + D+ ++
Sbjct: 417 AEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPIT----KVDVTHSILK 472
Query: 194 GRLPI-ESMLMVTHNIEEAVLMCDRV 218
R + ++ ++V+H+++ + +CDR
Sbjct: 473 AREEMEQTFIIVSHDMDFVLDVCDRA 498
Score = 87.6 bits (217), Expect = 6e-18
Identities = 67/277 (24%), Positives = 121/277 (43%), Gaps = 57/277 (20%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS--P 69
+E++++ + F VL ++F + GE++G+LGRSG+GKS L+ ++ G+ P
Sbjct: 1 IEVKNLTKKF------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP 54
Query: 70 SSGQVLF------KGKKIKDPPKD--------------------------------ISVV 91
+SG++++ K ++ P K I+++
Sbjct: 55 TSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIM 114
Query: 92 FQ-TFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGML 150
Q TFAL+ TVL+NV L+ G + +E RA+ I+++ L + ++SGG
Sbjct: 115 LQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEK 174
Query: 151 QRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIE- 209
QRV AR P L L DEP LD TA+ + L + + SM++ +H E
Sbjct: 175 QRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI---SMVLTSHWPEV 231
Query: 210 ------EAVLMCDRVLVFSSNPGRIAEEVLISIPHPR 240
+A+ + + + P + + +
Sbjct: 232 IEDLSDKAIWLENGEIKEEGTPDEVVAVFMEGVSEVE 268
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 92.8 bits (230), Expect = 1e-19
Identities = 73/229 (31%), Positives = 114/229 (49%), Gaps = 28/229 (12%)
Query: 14 IQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV----SP 69
+Q I + L K L V+ N+ GE+V LLG SGSGKSTLLR ++GL+ S
Sbjct: 1 MQTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSA 60
Query: 70 SSGQVLF------KGKKIKDPPKD---ISVVFQTFALFPWLTVLENVELGLKAKGID--- 117
S L +G+ +D K +FQ F L L+VLENV +G A G
Sbjct: 61 GSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIG--ALGSTPFW 118
Query: 118 -------KEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDE 170
E+++RAL A+ +G+ F + +SGG QRV ARA + ++L DE
Sbjct: 119 RTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADE 178
Query: 171 PFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVL 219
P ++LD +A + L D+ + ++++ H ++ A+ C+R++
Sbjct: 179 PIASLDPESARIVMDTLRDINQNDGI---TVVVTLHQVDYALRYCERIV 224
>gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c.
Length = 198
Score = 91.7 bits (228), Expect = 3e-19
Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 8/154 (5%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI----KD 83
G ++ + ++F +++GE + + G +G GK+TLLRI+AGL+ P SG+V + G + +
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDE 70
Query: 84 PPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTT 143
P ++I + L P L+ LEN L A +R A+ +GL GFE
Sbjct: 71 PHRNILYLGHLPGLKPELSALEN--LHFWAAIHGGAQR--TIEDALAAVGLTGFEDLPAA 126
Query: 144 EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
++S G +R+ AR ++ L ++DEP +ALD
Sbjct: 127 QLSAGQQRRLALARLWLSRAPLWILDEPTTALDK 160
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 91.6 bits (227), Expect = 3e-19
Identities = 68/228 (29%), Positives = 111/228 (48%), Gaps = 27/228 (11%)
Query: 13 EIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPS 70
E + I S + G L ++ + + EI L+G SG GKST LR + + + P
Sbjct: 1 EAKKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPG 60
Query: 71 ---SGQVLFKGKKIKDPP-------KDISVVFQTFALFPWLTVLENVELGLKAKGI-DKE 119
+G V +G+ I P K + +VFQ FP+ ++ ENV GL+ G+ DK
Sbjct: 61 VTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPF-SIYENVIYGLRLAGVKDKA 119
Query: 120 ------ERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFS 173
E + + D + ESA +SGG QRV AR V P ++L+DEP S
Sbjct: 120 VLDEAVETSLKQAAIWDEVKDHLHESA--LSLSGGQQQRVCIARVLAVKPDVILLDEPTS 177
Query: 174 ALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
ALD +++ + L++L + ++++VTH++ +A + D+ F
Sbjct: 178 ALDPISSTQIENMLLELRDQ-----YTIILVTHSMHQASRISDKTAFF 220
>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes an multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHPM, Nitrile Hydratase
Propeptide Microcin.
Length = 710
Score = 91.5 bits (228), Expect = 3e-19
Identities = 61/174 (35%), Positives = 94/174 (54%), Gaps = 29/174 (16%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDI--- 88
+++ + + G+ V L+G SGSGKST+ +++AGL P SG++LF G ++ P+++
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLAN 553
Query: 89 --SVVFQTFALFPWLTVLENVELGLKAKGIDK---EERRKRAL--SAI-DLIGL--DGFE 138
++V Q LF TV +N+ L D + RA +AI D+I G++
Sbjct: 554 SVAMVDQDIFLFEG-TVRDNLTL------WDPTIPDADLVRACKDAAIHDVITSRPGGYD 606
Query: 139 SAHTTE----ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA----ENLR 184
A E +SGG QR+ ARA V PS+L++DE SALD T +NLR
Sbjct: 607 -AELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR 659
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 91.6 bits (227), Expect = 4e-19
Identities = 72/238 (30%), Positives = 124/238 (52%), Gaps = 33/238 (13%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS------PSSGQVLFKGKKIKDPP 85
+L + + + I G++G SGSGKSTLL+++ L+ G+VL+ GK I
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 86 -----KDISVVFQTFALFPWLTVLENVELGLKAKGI-DKEERRKRALSAIDLIGL----- 134
K++ +VFQ FP L++ +N+ LK+ GI +K E +K + +GL
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144
Query: 135 DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194
D S +++SGG QR+ ARA + P +LLMDEP S +D++ ++ + + +L E
Sbjct: 145 DRLNSP-ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE- 202
Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE-----EVLISIPHPRNRLSPEF 247
++++V+HN ++ + D V F N G + E E+ S P+N L+ ++
Sbjct: 203 ----IAIVIVSHNPQQVARVADYV-AFLYN-GELVEWGSSNEIFTS---PKNELTEKY 251
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 91.7 bits (228), Expect = 4e-19
Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 19/213 (8%)
Query: 29 NLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD-PPKD 87
+ LD +N V GE V L+G SG+GKSTL +++ P SG++L G ++ P +
Sbjct: 352 DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAE 411
Query: 88 ----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-----GLDGFE 138
+++V Q LF +V+EN+ G ++ E RA A + I G D +
Sbjct: 412 LRARMALVPQDPVLFA-ASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYL 470
Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPI 198
+SGG QR+ ARA + +LL+DE SALD + + ++ L L ++GR
Sbjct: 471 GERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETL-MKGR--- 526
Query: 199 ESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
+ L++ H + VL DR++V GRI +
Sbjct: 527 -TTLIIAHRL-ATVLKADRIVVMDQ--GRIVAQ 555
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 91.4 bits (228), Expect = 4e-19
Identities = 49/155 (31%), Positives = 86/155 (55%), Gaps = 15/155 (9%)
Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISV 90
++ ++F +++GE+V + G +G+GK++LLRI+AGL P +G+VL++G+ I+ +
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDE--- 71
Query: 91 VFQTFALF--------PWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHT 142
+ L+ LT LEN+ + G +E AL+ +GL GFE
Sbjct: 72 -YHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ---VGLAGFEDVPV 127
Query: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
++S G +RV AR ++ L ++DEPF+A+D
Sbjct: 128 RQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDK 162
>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 694
Score = 91.3 bits (227), Expect = 5e-19
Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 23/212 (10%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKK--IKDPP---K 86
VL +N ++ GE +G++G SGSGKSTL +++ L +P GQVL G I DP +
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRR 531
Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA--LSAIDLI-----GLDGFES 139
+ VV Q LF ++ +N+ L G E A A D I G +
Sbjct: 532 QMGVVLQENVLFSR-SIRDNIALC--NPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVG 588
Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199
+SGG QR+ ARA V P +L+ DE SALD + + ++ ++ GR
Sbjct: 589 EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREI-CRGR---- 643
Query: 200 SMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
+++++ H + V CDR++V G+IAE
Sbjct: 644 TVIIIAHRL-STVRACDRIIVLEK--GQIAES 672
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 90.8 bits (225), Expect = 6e-19
Identities = 67/240 (27%), Positives = 114/240 (47%), Gaps = 29/240 (12%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS--PS---SGQVLFKGKKIK 82
G + V + +I ++G SG GK+TLLR I + P G++ FKG+ I
Sbjct: 14 GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIY 73
Query: 83 DPPKDISV-------VFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAI------ 129
DP D++ VFQ FP +++ +NV G + G+ + + R +
Sbjct: 74 DPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAAL 132
Query: 130 -DLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188
D + + + T +SGG QR+ ARA V P ++L+DEP SALD + T I
Sbjct: 133 WDEVKSELNKPG--TRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA-----TQRI 185
Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRV-LVFSSNPGRIAEEVLISIPHPRNRLSPEF 247
+ +E ++++VTHNI +A+ + D + ++ I + P+N+L+ E+
Sbjct: 186 EKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI-VERPKNKLTEEY 244
>gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 90.8 bits (226), Expect = 7e-19
Identities = 66/202 (32%), Positives = 112/202 (55%), Gaps = 26/202 (12%)
Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF---------KGKKIKDPPK 86
VN ++ SG V ++G +GSGKSTLL+ + GL+ P+SG V K KK+K K
Sbjct: 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRK 85
Query: 87 DISVVFQTFA---LFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTT 143
+ +VFQ F LF TV +++ G G+ +E+ +++A I+L+GL A +
Sbjct: 86 KVGIVFQ-FPEHQLFE-ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSP 143
Query: 144 -EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWI----EGRLPI 198
E+SGG ++RV A + P +L++DEP + LD R ++++++ E L
Sbjct: 144 FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD----PKGRKEMMEMFYKLHKEKGLTT 199
Query: 199 ESMLMVTHNIEEAVLMCDRVLV 220
++VTH++E+A D+++V
Sbjct: 200 ---VLVTHSMEDAARYADQIVV 218
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes.
Length = 571
Score = 90.5 bits (225), Expect = 8e-19
Identities = 70/214 (32%), Positives = 106/214 (49%), Gaps = 28/214 (13%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87
LD ++ + GE V L+GRSGSGKSTL+ +I P SGQ+L G + D
Sbjct: 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRR 406
Query: 88 -ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRK--RALSAIDLI-----GLDGFES 139
+++V Q LF T+ N+ G + + D+ E + A A D + GLD
Sbjct: 407 QVALVSQDVVLFN-DTIANNIAYG-RTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIG 464
Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199
+ +SGG QR+ ARA + +L++DE SALD +E L ++ ++GR
Sbjct: 465 ENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDN-ESERLVQAALERLMQGR---- 519
Query: 200 SMLMVTH---NIEEAVLMCDRVLVFSSNPGRIAE 230
+ L++ H IE+A DR++V GRI E
Sbjct: 520 TTLVIAHRLSTIEKA----DRIVVMDD--GRIVE 547
>gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 90.3 bits (224), Expect = 9e-19
Identities = 73/203 (35%), Positives = 98/203 (48%), Gaps = 16/203 (7%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS--GQVLFKGKKIKDPP-KDI 88
+L+ V S GEI+ +LG SGSGKSTLL +AG + ++ G +L +K K
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT 142
Query: 89 SVVFQTFALFPWLTVLEN---VELGLKAKGIDKEERRKRALSAIDLIGLDGFES-----A 140
V Q L+P LTV E L K + K+E+ A S I +GL E+ +
Sbjct: 143 GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNS 202
Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200
ISGG +RV A ++ PSLL++DEP S LD A L L L +G+ + S
Sbjct: 203 FIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTS 262
Query: 201 MLMVTHNIEEAVL-MCDRVLVFS 222
M H V M D VLV S
Sbjct: 263 M----HQPSSRVYQMFDSVLVLS 281
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease.
Length = 2272
Score = 90.1 bits (223), Expect = 9e-19
Identities = 63/203 (31%), Positives = 110/203 (54%), Gaps = 17/203 (8%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVF 92
+D++N +I LG +G+GK+T L I+ GL+ P+SG VL GK I+ ++ V
Sbjct: 946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE---TNLDAVR 1002
Query: 93 QTFA-------LFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEI 145
Q+ LF LTV E++ + KG EE + + ++ GL + ++
Sbjct: 1003 QSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDL 1062
Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVT 205
SGGM +++ A AFV ++++DEP S +D + ++ DL+ + GR +++M T
Sbjct: 1063 SGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI-WDLLLKYRSGR----TIIMST 1117
Query: 206 HNIEEAVLMCDRVLVFSSNPGRI 228
H+++EA L+ DR+ + S GR+
Sbjct: 1118 HHMDEADLLGDRIAIISQ--GRL 1138
Score = 75.0 bits (184), Expect = 3e-14
Identities = 56/195 (28%), Positives = 97/195 (49%), Gaps = 14/195 (7%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVF 92
+D++ V GE GLLG +G+GK+T +++ G + +SG GK I +IS V
Sbjct: 1955 VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIL---TNISDVH 2011
Query: 93 QTFALFP-------WLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEI 145
Q P LT E++ L + +G+ EE K A +I +GL +
Sbjct: 2012 QNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTY 2071
Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVT 205
SGG +++ A A + P L+L+DEP + +D L ++ + EGR ++++ +
Sbjct: 2072 SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGR----AVVLTS 2127
Query: 206 HNIEEAVLMCDRVLV 220
H++EE +C R+ +
Sbjct: 2128 HSMEECEALCTRLAI 2142
>gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal propeptide
cleavage domain, and an HlyD homolog (TIGR03794). In a
number of genomes, a conserved propeptide sequence with
a classic Gly-Gly motif.
Length = 686
Score = 89.2 bits (222), Expect = 2e-18
Identities = 66/217 (30%), Positives = 100/217 (46%), Gaps = 34/217 (15%)
Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD--- 87
L+LD V+ + GE V ++G SGSGKSTLLR++ G +P SG V + G+ +
Sbjct: 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVR 526
Query: 88 --ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESA----- 140
+ VV Q L ++ EN+ + +E A A + GL A
Sbjct: 527 RQLGVVLQNGRLMSG-SIFENI---AGGAPLTLDE----AWEAARMAGLAEDIRAMPMGM 578
Query: 141 HT------TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194
HT +SGG QR+ ARA V P +LL DE SALD T + L
Sbjct: 579 HTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESL------E 632
Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
RL + + +++ H + + DR+ V + GR+ ++
Sbjct: 633 RLKV-TRIVIAHRL-STIRNADRIYVL--DAGRVVQQ 665
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 88.9 bits (220), Expect = 2e-18
Identities = 66/208 (31%), Positives = 109/208 (52%), Gaps = 25/208 (12%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS-----PSSGQVLFKGKKIK 82
GN L ++ + E+ L+G SG GKST LR + + +G++ F+G+ I
Sbjct: 15 GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIY 74
Query: 83 DPP-------KDISVVFQTFALFPWLTVLENVELGLKAKGI-DKE---ERRKRAL--SAI 129
K++ +VFQ FP+ +V +NV GLK G+ DKE +R + +L +AI
Sbjct: 75 GSKMDLVELRKEVGMVFQQPTPFPF-SVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAI 133
Query: 130 DLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLID 189
D + + SGG QR+ ARA V P ++L+DEP SALD +++ + L++
Sbjct: 134 WKETKDNLDR-NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLME 192
Query: 190 LWIEGRLPIESMLMVTHNIEEAVLMCDR 217
L + + +MVTHN+++A + D+
Sbjct: 193 LKHQ-----YTFIMVTHNLQQAGRISDQ 215
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 88.6 bits (220), Expect = 3e-18
Identities = 64/219 (29%), Positives = 105/219 (47%), Gaps = 30/219 (13%)
Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF---------KGKKIKDPPK 86
VN + G +G +GSGKST+++++ GL P+ G V K K IK K
Sbjct: 26 VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRK 85
Query: 87 DISVVFQTFALFPWL-----TVLENVELGLKAKGIDKEERRKRALSAIDLIGLD-GFESA 140
+ +VFQ FP TVL++V G + G+ +EE A + L+G+
Sbjct: 86 KVGLVFQ----FPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEK 141
Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200
+ E+SGG ++RV A + P +L++DEP + LD R +L+ L+ + +
Sbjct: 142 NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG----RKELMTLFKKLHQSGMT 197
Query: 201 MLMVTHNIEEAVLMCDRV-------LVFSSNPGRIAEEV 232
+++VTH +++ D V LV S P I ++V
Sbjct: 198 IVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQDV 236
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 88.0 bits (218), Expect = 4e-18
Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 48/228 (21%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLR------------------IIAGL--VSPSS 71
+L +N ++ E+ +G SG GKST LR I G+ S +
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 72 GQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR-----KRAL 126
VL + K + +VFQ FP ++ +NV G K G+ K +++ +++L
Sbjct: 80 NVVLLRAK--------VGMVFQKPNPFP-KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSL 130
Query: 127 SAIDLIG-LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA---EN 182
+++ L L E+SGG QR+ ARA V P++LLMDEP SALD + EN
Sbjct: 131 TSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIEN 190
Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
L +L + I ++VTH++++A + DRV F S GRI E
Sbjct: 191 LIQEL-----KKNFTI---IVVTHSMKQAKKVSDRVAFFQS--GRIVE 228
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 87.0 bits (216), Expect = 9e-18
Identities = 67/216 (31%), Positives = 110/216 (50%), Gaps = 20/216 (9%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
LL + I + +S + VL ++F + +GE+ LLG +G+GKSTL++IIAG+V P
Sbjct: 11 LLCARSISKQYS------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD 64
Query: 71 SGQVLFKGKKIK--DPPK----DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKR 124
SG + G P K I +V Q LFP L+V EN+ GL K ++ K+
Sbjct: 65 SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGL-PKRQASMQKMKQ 123
Query: 125 ALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184
L+A+ LD SA + E++ Q V R + +L++DEP ++L E L
Sbjct: 124 LLAALG-CQLDLDSSAGSLEVADR--QIVEILRGLMRDSRILILDEPTASLTPAETERLF 180
Query: 185 TDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220
+ + +L +G ++ ++H + E + DR+ V
Sbjct: 181 SRIRELLAQG----VGIVFISHKLPEIRQLADRISV 212
Score = 62.4 bits (152), Expect = 2e-10
Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 43/211 (20%)
Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-KDPPKD---ISVV 91
++ V +GEI+GL G G+G++ L + GL G+++ GK+I +V
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341
Query: 92 F-----QTFALF-----PWLTV-LENVELGLKAKGIDKE----ERRKRALSAIDLIGLDG 136
+ Q+ L+ W L + G K +E ER +RAL+ I +
Sbjct: 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKP-ARENAVLERYRRALN----IKFNH 396
Query: 137 FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL 196
E A T +SGG Q+V A+ P LL++DEP +DV + R D+ L
Sbjct: 397 AEQAART-LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDV----SARNDIYQL------ 445
Query: 197 PIESM-------LMVTHNIEEAVLMCDRVLV 220
I S+ L ++ ++EE M DRVLV
Sbjct: 446 -IRSIAAQNVAVLFISSDLEEIEQMADRVLV 475
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 86.8 bits (215), Expect = 9e-18
Identities = 68/213 (31%), Positives = 105/213 (49%), Gaps = 27/213 (12%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL-----VSPSSGQVLFKGKKIK 82
G+ L ++ ++ L+G SG GKST LR + + + G++L G+ I
Sbjct: 17 GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY 76
Query: 83 DPPKD-------ISVVFQTFALFPWLTVLENVELGLKAKGI-------DKEERRKRALSA 128
DP D + +VFQ FP ++ ENV GL+ G+ ++ ER R +
Sbjct: 77 DPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAAL 135
Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188
D + ESA +SGG QR+ ARA V P +LLMDEP SALD + + + +LI
Sbjct: 136 WDEVKDRLHESA--LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIE-ELI 192
Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
++ R I ++VTHN+++A + D F
Sbjct: 193 HE-LKARYTI---IIVTHNMQQAARVSDVTAFF 221
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 86.3 bits (213), Expect = 1e-17
Identities = 63/201 (31%), Positives = 103/201 (51%), Gaps = 23/201 (11%)
Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF---------KGKKIKDPPK 86
++ V G L+G +GSGKSTLL+ + GL+ P+ G+V K K+IK K
Sbjct: 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRK 84
Query: 87 DISVVFQTFALFPWL-----TVLENVELGLKAKGIDKEERRKRALSAIDLIGLDG-FESA 140
+ VVFQ FP TVL++V G + GI KE+ K A ++++GL F
Sbjct: 85 KVGVVFQ----FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEK 140
Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200
E+SGG ++RV A + P +L++DEP + LD R +++ L+ ++
Sbjct: 141 SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD----PKARIEMMQLFESIHQSGQT 196
Query: 201 MLMVTHNIEEAVLMCDRVLVF 221
+++VTH +++ D V +
Sbjct: 197 VVLVTHLMDDVADYADYVYLL 217
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 86.0 bits (213), Expect = 2e-17
Identities = 63/223 (28%), Positives = 104/223 (46%), Gaps = 23/223 (10%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
+ + I +SF G + L VN V GEI LLG +G+GKSTL+++++G+ P+
Sbjct: 5 YISMAGIGKSF------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT 58
Query: 71 SGQVLFKGKKI-KDPPKD-----ISVVFQTFALFPWLTVLENVELGL----KAKG---ID 117
G + K K I +++Q ++ LTVLEN+ +G K G ID
Sbjct: 59 KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIID 118
Query: 118 KEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
E R RA + +GL +S Q + A+ ++ +++MDEP S+L
Sbjct: 119 WREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTN 178
Query: 178 LTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220
+ L + L EG +++ ++H + E +CDR V
Sbjct: 179 KEVDYLFLIMNQLRKEGT----AIVYISHKLAEIRRICDRYTV 217
Score = 71.4 bits (175), Expect = 5e-13
Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 35/221 (15%)
Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTF 95
++F+V GEI+G G GSG++ L+ + G+ + G++ GK I P + V +
Sbjct: 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDIS-PRSPLDAVKKGM 340
Query: 96 AL----------FPWLTVLENVEL-------GLK-AKGI--DKEERR----KRALSAIDL 131
A FP ++ +N+ + G K A G+ + +E+R +R L A+
Sbjct: 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC 400
Query: 132 IGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLW 191
++ + TE+SGG Q+V ++ P +++ DEP +DV + + L
Sbjct: 401 HSVN----QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLA 456
Query: 192 IEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV 232
+G+ +LMV+ + E + +CDR+ VF GR+ + +
Sbjct: 457 DDGK----VILMVSSELPEIITVCDRIAVFCE--GRLTQIL 491
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 85.9 bits (213), Expect = 2e-17
Identities = 68/244 (27%), Positives = 129/244 (52%), Gaps = 35/244 (14%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS-P---SSGQVLFKG---KKIKDPP 85
+D+++++V GE+VG++G SGSGKS I GL+ P + ++ F G ++I +
Sbjct: 23 VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82
Query: 86 K------DISVVFQ--TFALFPWLTVLENVELGLKA-KGIDKEERRKRALSAIDLIGLDG 136
+ +++++FQ +L P TV + +K +G +K+ RR+RA+ ++ +G+
Sbjct: 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPD 142
Query: 137 FES---AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIE 193
S + ++SGGM QRV A A P LL+ DEP +ALDV ++ +I+L +E
Sbjct: 143 PASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDV----TIQAQIIELLLE 198
Query: 194 -GRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI-----AEEVLISIPHPRN----RL 243
+ +++++TH++ +++V + G++ A ++ + HP R
Sbjct: 199 LQQKENMALVLITHDLALVAEAAHKIIVMYA--GQVVETGKAHDIFRAPRHPYTQALLRA 256
Query: 244 SPEF 247
PEF
Sbjct: 257 LPEF 260
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 85.8 bits (212), Expect = 2e-17
Identities = 66/213 (30%), Positives = 107/213 (50%), Gaps = 27/213 (12%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPSS---GQVLFKGKKIK 82
G+ L ++ + +V +G SG GKST LR+ + + P++ G++ G+ I
Sbjct: 14 GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIY 73
Query: 83 DPP-------KDISVVFQTFALFPWLTVLENVELGLKAKGI-DKEERRKRALSAIDLIGL 134
D K++ +VFQ FP ++ ENV GL+ G+ D R+R + L
Sbjct: 74 DKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAAL 132
Query: 135 -----DGF-ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188
D ESA +SGG QR+ ARA V PS+LLMDEP SALD ++ + +
Sbjct: 133 WDEVKDKLKESAFA--LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIH 190
Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
+L + ++++VTHN+++A + D+ F
Sbjct: 191 ELKKD-----YTIVIVTHNMQQAARVSDKTAFF 218
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 84.9 bits (210), Expect = 4e-17
Identities = 56/198 (28%), Positives = 104/198 (52%), Gaps = 11/198 (5%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP------ 85
V++ V+ V+SGEIVGLLG +G+GK+T ++ G+V +G ++ + I P
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 86 KDISVVFQTFALFPWLTVLENVELGLKA-KGIDKEERRKRALSAIDLIGLDGFESAHTTE 144
+ I + Q ++F L+V +N+ L+ + E+R RA ++ ++ +
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQS 137
Query: 145 ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMV 204
+SGG +RV ARA P +L+DEPF+ +D ++ +++ + L G +L+
Sbjct: 138 LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGL----GVLIT 193
Query: 205 THNIEEAVLMCDRVLVFS 222
HN+ E + +C+R + S
Sbjct: 194 DHNVRETLAVCERAYIVS 211
>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 544
Score = 84.7 bits (210), Expect = 4e-17
Identities = 73/229 (31%), Positives = 108/229 (47%), Gaps = 39/229 (17%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK--DPP 85
G L ++F + +GE + ++G SGSGKSTL R+I G+ P+SG V G +K D
Sbjct: 329 GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRE 388
Query: 86 ---KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRK-----RALSAIDLIGLDGF 137
K I + Q LFP TV EN+ A+ + + K + +LI
Sbjct: 389 TFGKHIGYLPQDVELFPG-TVAENI-----ARFGENADPEKIIEAAKLAGVHELIL--RL 440
Query: 138 ESAHTTEI-------SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
+ T I SGG QR+ ARA P L+++DEP S LD + L + L
Sbjct: 441 PDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKAL 500
Query: 191 WIEGRLPIESMLMVTHNIEEAVLMC-DRVLVFSSNPGRIA-----EEVL 233
G +++++TH ++L C D++LV GRIA +EVL
Sbjct: 501 KARGI----TVVVITHRP--SLLGCVDKILVL--QDGRIARFGERDEVL 541
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 84.6 bits (210), Expect = 4e-17
Identities = 57/177 (32%), Positives = 95/177 (53%), Gaps = 19/177 (10%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
LLE+++I ++F G + LD V+ V +GEIV L G +G+GKSTL+++++G V P
Sbjct: 5 LLEMKNITKTF------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPH 57
Query: 71 ---SGQVLFKGKK-----IKDPP-KDISVVFQTFALFPWLTVLENVELG---LKAKGIDK 118
G+++F+G++ I+D I+++ Q AL L+VLEN+ LG +D
Sbjct: 58 GTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDY 117
Query: 119 EERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175
+ RA + + LD + + G Q V A+A LL++DEP ++L
Sbjct: 118 DAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL 174
Score = 46.5 bits (111), Expect = 2e-05
Identities = 52/220 (23%), Positives = 102/220 (46%), Gaps = 36/220 (16%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP--SSGQVLFKGKKIK-DPPKD- 87
+D V+F++ GEI+G+ G G+G++ L++ + G P G++ GK +K P+
Sbjct: 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFG-AYPGRWEGEIFIDGKPVKIRNPQQA 335
Query: 88 ----ISVV---FQTFALFPWLTVLENVELGL-----KAKGIDKEERRKRALSAIDLIGLD 135
I++V + + P + V +N+ L ID K L +I + +
Sbjct: 336 IAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKV- 394
Query: 136 GFESAH----TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV-LTAE--NLRTDLI 188
++A +SGG Q+ A+ ++ P +L++DEP +DV E L L+
Sbjct: 395 --KTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLV 452
Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRI 228
+ ++++++ + E + + DRVLV G++
Sbjct: 453 QQGV-------AIIVISSELPEVLGLSDRVLVMHE--GKL 483
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 84.6 bits (209), Expect = 5e-17
Identities = 75/236 (31%), Positives = 113/236 (47%), Gaps = 29/236 (12%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV---- 67
+EI+D+ SF G + VLD VN + I L+G SGSGKSTLLR+ L+
Sbjct: 4 IEIRDLKVSF------GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYP 57
Query: 68 -SPSSGQVLFKGKKIKDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDK--- 118
+ SG+V G+ I + + +VFQ P L++ ENV LGLK + K
Sbjct: 58 EARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKK 117
Query: 119 --EERRKRALSAIDLIG-LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175
+ER + AL L + A ++SGG QR+ ARA P +LL DEP + L
Sbjct: 118 ELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANL 177
Query: 176 DVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
D + + ++L + ++++VTH ++A + D V G+I E
Sbjct: 178 DPENTAKIESLFLELKKD-----MTIVLVTHFPQQAARISDYVAFLYK--GQIVEW 226
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 84.0 bits (208), Expect = 6e-17
Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 27/206 (13%)
Query: 22 SLKKIS---GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG 78
SL+ +S G VL V+ + G+I+ LLG +G+GKSTL+R++ GLV+P G +
Sbjct: 6 SLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI---- 61
Query: 79 KKIKDPPKDISVVFQTFALFPW--LTVLENVEL--GLKAKGIDKEERRKRALSAIDLIGL 134
++ I V Q L LTV + L G K + I +R +A ID
Sbjct: 62 --KRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID---- 115
Query: 135 DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194
A ++SGG QRV ARA + P LL++DEP +DV N + L DL +
Sbjct: 116 -----APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV----NGQVALYDLIDQL 166
Query: 195 RLPIE-SMLMVTHNIEEAVLMCDRVL 219
R ++ ++LMV+H++ + D VL
Sbjct: 167 RRELDCAVLMVSHDLHLVMAKTDEVL 192
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 84.3 bits (209), Expect = 6e-17
Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 36/234 (15%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
LL + + F G LL ++ VN V EIV L+G +G+GK+T+ + G P+
Sbjct: 5 LLSVSGLMMRF------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT 58
Query: 71 SGQVLFKGKKIKDPP------KDISVVFQTFALFPWLTVLEN--------VELG-----L 111
G +L +G+ I+ P + FQ LF +TV+EN ++ G L
Sbjct: 59 GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLL 118
Query: 112 KAKGIDKEERRK--RALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMD 169
K + E RA + ++ +GL + ++ G +R+ AR V P +L++D
Sbjct: 119 KTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLD 178
Query: 170 EPFSALDVLTAENLRTDLIDLWIEGRLPIE---SMLMVTHNIEEAVLMCDRVLV 220
EP + L+ + L +LI L E ++L++ H+++ + + DR+ V
Sbjct: 179 EPAAGLNPKETKELD-ELIA-----ELRNEHNVTVLLIEHDMKLVMGISDRIYV 226
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 84.1 bits (208), Expect = 7e-17
Identities = 58/206 (28%), Positives = 101/206 (49%), Gaps = 15/206 (7%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQ--------VLFKGKKIKD 83
L+ ++F++ G L+G +GSGKST+ ++I GL+ P + K + D
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81
Query: 84 PPKDISVVFQT-FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHT 142
+ + +VFQ F TV ++V GL+ + + + E K + +G+ + +
Sbjct: 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP 141
Query: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESML 202
+SGG QRV A V P ++++DE S LD E + + L + L + S
Sbjct: 142 ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVIS-- 199
Query: 203 MVTHNIEEAVLMCDRVLVFSSNPGRI 228
+TH+I+EA M D+VLV + G++
Sbjct: 200 -ITHDIDEAN-MADQVLVL--DDGKL 221
>gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 84.0 bits (208), Expect = 8e-17
Identities = 67/224 (29%), Positives = 108/224 (48%), Gaps = 19/224 (8%)
Query: 8 DNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67
N +++ +++ + + S L LD VN V GE + +LGR+GSGKST+ + + L+
Sbjct: 1 MNEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL 60
Query: 68 SPSSGQVLFKGKKIKDPPK--DI----SVVFQTFALFP-----WLTVLENVELGLKAKGI 116
PS G+V G D DI +VFQ P V E+V G + GI
Sbjct: 61 IPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQN----PDNQIVATIVEEDVAFGPENLGI 116
Query: 117 DKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176
EE R+R ++ +G+ + +SGG QRV A + P ++ DEP + LD
Sbjct: 117 PPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLD 176
Query: 177 VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220
+ + +L + + I +++TH +EEAV DR++V
Sbjct: 177 PSGRREVVNTIKELNKKYGITI---ILITHYMEEAV-EADRIIV 216
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 83.7 bits (207), Expect = 9e-17
Identities = 68/209 (32%), Positives = 108/209 (51%), Gaps = 30/209 (14%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLR-------IIAGLVSPSSGQVLFKGKKI---- 81
L +N + + ++ L+G SG GKSTLLR +I G+ +G++ G+ I
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGV--KITGKLTMDGEDIYGNI 76
Query: 82 --KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGI-DKE------ERRKRALSAIDLI 132
D + +VFQ FP +++ ENV GL+A+GI DK+ ER R + D +
Sbjct: 77 DVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV 135
Query: 133 GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWI 192
D +S H +SGG QR+ AR + P ++LMDEP SALD + T I+ +
Sbjct: 136 K-DRLKS-HAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA-----THKIEELM 188
Query: 193 EGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
E ++++VTH++++A + DR F
Sbjct: 189 EELKKNYTIVIVTHSMQQARRISDRTAFF 217
>gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
Length = 711
Score = 83.6 bits (207), Expect = 9e-17
Identities = 68/208 (32%), Positives = 98/208 (47%), Gaps = 23/208 (11%)
Query: 8 DNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67
L+E QD+ SFS ++ VL + F + GE+V L+G SGSGKST+ ++ L
Sbjct: 475 LEGLIEFQDV--SFSYP-NRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY 531
Query: 68 SPSSGQVLFKGKKIKDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR 122
P+ GQVL G + + +++V Q LF +V EN+ GL ++
Sbjct: 532 QPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLTDTPDEEIMAA 590
Query: 123 KRALSAIDLIGLDGFESAHTTEI-------SGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175
+A +A D I F + + TE+ SGG QR+ ARA V P +L++DE SAL
Sbjct: 591 AKAANAHDFIM--EFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSAL 648
Query: 176 DV-----LTAENLRTDLIDLWIEGRLPI 198
D L R L I RL
Sbjct: 649 DAECEQLLQESRSRASRTVLLIAHRLST 676
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 83.5 bits (207), Expect = 9e-17
Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 41/212 (19%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA---GLVSPS--SGQVLFKGKKIKDPPK 86
L ++ + + +G SG GKSTLLR LV G++ G+ I D
Sbjct: 40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99
Query: 87 DIS-------VVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDG--- 136
D++ +VFQ FP ++ ENV GL+ +GI +R L L G
Sbjct: 100 DVAELRRRVGMVFQRPNPFP-KSIYENVVYGLRLQGI----NNRRVLDEAVERSLRGAAL 154
Query: 137 --------FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD---VLTAENLRT 185
E+A +SGG QR+ ARA + P +LL+DEP SALD L E L T
Sbjct: 155 WDEVKDRLHENA--FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELIT 212
Query: 186 DLIDLWIEGRLPIESMLMVTHNIEEAVLMCDR 217
+L + ++++VTHN+++A + D
Sbjct: 213 ELKSKY--------TIVIVTHNMQQAARVSDY 236
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 83.6 bits (206), Expect = 9e-17
Identities = 69/229 (30%), Positives = 127/229 (55%), Gaps = 15/229 (6%)
Query: 9 NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68
N++LE++++ F +K S ++ L+ V+F+++ GE V ++G++GSGKST R+I GL
Sbjct: 2 NKILEVENLV--FKYEKES-DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE 58
Query: 69 PSSGQVLFKGKKIK-----DPPKDISVVFQT-FALFPWLTVLENVELGLKAKGIDKEERR 122
G+V G+ + + + I +VFQ F TV ++V G++ +GI +EE
Sbjct: 59 EFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMI 118
Query: 123 KRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAEN 182
KR A+ + + F++ +SGG QRV A + P ++++DE S LD +
Sbjct: 119 KRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQE 178
Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
+ + ++ + +L ++L +TH+++EA DR+LV + G I +E
Sbjct: 179 IMRVIHEIKEKYQL---TVLSITHDLDEAA-SSDRILVMKA--GEIIKE 221
>gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 83.2 bits (206), Expect = 1e-16
Identities = 62/187 (33%), Positives = 97/187 (51%), Gaps = 27/187 (14%)
Query: 44 EIVGLLGRSGSGKSTLLRIIAGL-----VSPSSGQVLFKGKKIKDPP-------KDISVV 91
+I L+G SGSGKST LR + + ++ +GQ+L++G I K I +V
Sbjct: 47 KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMV 106
Query: 92 FQTFALFPWLTVLENVELGLKAKGI-DKE------ERRKRALSAIDLIGLDGFESAHTTE 144
FQ F ++ EN+ L+ G+ DK+ E + + D + D +SA T
Sbjct: 107 FQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALT-- 163
Query: 145 ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMV 204
+SGG QR+ ARA V P +LLMDEP SALD ++ L + +L ++++V
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKN-----YTIIIV 218
Query: 205 THNIEEA 211
THN+++A
Sbjct: 219 THNMQQA 225
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005).
Length = 500
Score = 83.0 bits (205), Expect = 1e-16
Identities = 66/224 (29%), Positives = 104/224 (46%), Gaps = 25/224 (11%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
LLE++ I ++F G + LD ++ V GE VGL G +G+GKSTL++I++G V P
Sbjct: 1 LLEMKGIVKTF------GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPH 53
Query: 71 ---SGQVLFKGKKIK------DPPKDISVVFQTFALFPWLTVLENVELG----LKAKGID 117
G++ + G +K I ++ Q L P L+V EN+ LG L +
Sbjct: 54 GTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMA 113
Query: 118 KEERRKRALSAIDLIGLDGFESAHTT-EISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176
RA + + + LD + GG Q V A+A LL++DEP S+L
Sbjct: 114 YNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLT 173
Query: 177 VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220
E L + DL G + + ++H + E +CD + V
Sbjct: 174 EKETEILLDIIRDLKAHGV----ACVYISHKLNEVKAVCDTICV 213
Score = 48.7 bits (116), Expect = 3e-06
Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 22/205 (10%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS--SGQVLFKGKK--IKDPPKDI 88
+D V+F++ GEI+G+ G G+G++ L++ + G P G V GK I++P + I
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFG-AYPGKFEGNVFINGKPVDIRNPAQAI 334
Query: 89 SVVF-------QTFALFPWLTVLENVELGL-----KAKGIDKEERRKRALSAIDLIGLDG 136
+ + P L V +N+ L + ID + SAI + +
Sbjct: 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT 394
Query: 137 FES-AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195
+SGG Q+ A+ + P +L++DEP +DV + + L EG
Sbjct: 395 ASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGV 454
Query: 196 LPIESMLMVTHNIEEAVLMCDRVLV 220
++++V+ + E + + DRVLV
Sbjct: 455 ----AIIVVSSELAEVLGLSDRVLV 475
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 83.0 bits (205), Expect = 1e-16
Identities = 68/210 (32%), Positives = 100/210 (47%), Gaps = 41/210 (19%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRI---IAGLVSPSS--GQVLFKGKKIKDPPKD 87
L + ++ + L+G SG GKSTLLR + L+ G +L+ G+ I D D
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 88 -------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDG---- 136
I +VFQ FP ++ ENV G + G E+ K+ L I L G
Sbjct: 82 VVALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHG----EKNKKTLDTIVEKSLKGAALW 136
Query: 137 -------FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD-VLTA--ENLRTD 186
+SA +SGG QR+ AR V P ++LMDEP SALD + TA E+L D
Sbjct: 137 DEVKDRLHDSA--LSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIED 194
Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCD 216
L + ++++VTHN+++A + D
Sbjct: 195 LKKEY--------TVIIVTHNMQQAARVSD 216
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 83.1 bits (205), Expect = 1e-16
Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 14/206 (6%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP------K 86
L+ +N + GE +G++G++GSGKSTL + GL+ P G+VL G D K
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 87 DISVVFQT-FALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEI 145
+ +VFQ F TV E++ G + + E RKR A+ IGL+ + +
Sbjct: 78 LVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTL 137
Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVT 205
SGG Q V A + P L+ DE S LD + + + L +G+ +++ +T
Sbjct: 138 SGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK----TIVYIT 193
Query: 206 HNIEEAVLMCDRVLVFSSNPGRIAEE 231
HN+EE + DR++V G+I E
Sbjct: 194 HNLEE-LHDADRIIVMDR--GKIVLE 216
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 82.5 bits (204), Expect = 2e-16
Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 57/253 (22%)
Query: 1 MANIAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60
N I N ++ +Q++ S+ G + V ++ G++ L+G SG GKST+L
Sbjct: 3 KTNKKISKNIIISLQNVTISY------GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVL 56
Query: 61 RIIA---GLVSPSS--GQVLFKGKKIKDPPKD-------ISVVFQTFALFPWLTVLENVE 108
R + L+ S G+VLF G + DP D I +VFQ FP ++ EN+
Sbjct: 57 RSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIA 115
Query: 109 LGLKAKGI--DKEERRKRAL--SAI-----DLIGLDGFESAHTTEISGGMLQRVGFARAF 159
G + G D +E +R+L +A+ D + G+ +SGG QR+ AR
Sbjct: 116 FGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYS------LSGGQQQRLCIARTI 169
Query: 160 VVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESM---------LMVTHNIEE 210
+ P ++LMDEP SALD ++ L IE E+M ++VTHN+++
Sbjct: 170 AIEPEVILMDEPCSALDPIST---------LKIE-----ETMHELKKNFTIVIVTHNMQQ 215
Query: 211 AVLMCDRVLVFSS 223
AV + D F++
Sbjct: 216 AVRVSDMTAFFNA 228
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 81.9 bits (203), Expect = 3e-16
Identities = 68/214 (31%), Positives = 114/214 (53%), Gaps = 31/214 (14%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP-----KD 87
++ V+F G+ V ++G +G+GKSTL+ ++ + P SG++L G I+ ++
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN 410
Query: 88 ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR--KRALSAIDLI--GLDGFESAHTT 143
I+VVFQ LF ++ +N+ +G + D+E R +RA A D I DG++
Sbjct: 411 IAVVFQDAGLFN-RSIEDNIRVG-RPDATDEEMRAAAERA-QAHDFIERKPDGYD-TVVG 466
Query: 144 E----ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199
E +SGG QR+ ARA + P +L++DE SALDV T ++ +D ++GR
Sbjct: 467 ERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVK-AALDELMKGR---- 521
Query: 200 SMLMVTH---NIEEAVLMCDRVLVFSSNPGRIAE 230
+ ++ H + A DR+LVF + GR+ E
Sbjct: 522 TTFIIAHRLSTVRNA----DRILVFDN--GRVVE 549
>gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 81.9 bits (203), Expect = 3e-16
Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 39/206 (18%)
Query: 11 LLEIQDICQSFSLKK--ISGNLLV--LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL 66
LL+ D+ + + +K+ LV LD V+F + G+ + ++G SG GKSTL R++ +
Sbjct: 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI 64
Query: 67 VSPSSGQVLFKGKKIKDPPK--------DISVVFQT-FA-LFPWLTV---LE-----NVE 108
+P+ G++ ++G+ + I +VFQ + L P V LE N
Sbjct: 65 ETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTS 124
Query: 109 LGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTE----ISGGMLQRVGFARAFVVFPS 164
L ERR++AL+ + +GL H SGG QR+ ARA ++ P
Sbjct: 125 L-------SAAERREKALAMMAKVGL---RPEHYDRYPHMFSGGQRQRIAIARALMLDPD 174
Query: 165 LLLMDEPFSALDV-LTAE--NLRTDL 187
+++ DEP SALDV + A+ NL DL
Sbjct: 175 VVVADEPVSALDVSVQAQVLNLMMDL 200
>gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se.
Length = 253
Score = 81.8 bits (202), Expect = 4e-16
Identities = 74/250 (29%), Positives = 110/250 (44%), Gaps = 40/250 (16%)
Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK 82
L K G V+F++ GE++G++G SGSGKSTLL +AG ++P G + +
Sbjct: 9 LSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRS-- 66
Query: 83 DPPKDISVVFQT----FALFPWLTVLENVELGLK---AKGIDKEER----------RKRA 125
++ + + W V +N GL+ + G + ER RA
Sbjct: 67 GAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRA 126
Query: 126 LSA-------IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVL 178
+ ID +D A SGGM QR+ AR V P L+ MDEP LDV
Sbjct: 127 AAHDWLEEVEIDPTRIDDLPRA----FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS 182
Query: 179 TAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE-----EVL 233
L L L + L ++++VTH++ A L+ R+LV GR+ E +VL
Sbjct: 183 VQARLLDLLRGLVRDLGL---AVIIVTHDLGVARLLAQRLLVMQQ--GRVVESGLTDQVL 237
Query: 234 ISIPHPRNRL 243
HP +L
Sbjct: 238 DDPQHPYTQL 247
>gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 81.5 bits (201), Expect = 4e-16
Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 41/244 (16%)
Query: 1 MANIAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60
+A +LE++D+ + G ++ ++ ++ + L+G SG GKST L
Sbjct: 11 IAPFPEAKEHILEVKDLSIYY------GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFL 64
Query: 61 RIIAGL-----VSPSSGQVLFKGKKIKDPP-------KDISVVFQTFALFPWLTVLENVE 108
R I + + S G++L++G I D ++I +VFQ FP ++ N+
Sbjct: 65 RSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFP-KSIYNNIT 123
Query: 109 LGLKAKGIDKEERRKRALSAI-----------DLIGLDGFESAHTTEISGGMLQRVGFAR 157
LK G ERRK L I D + SA +SGG QR+ AR
Sbjct: 124 HALKYAG----ERRKSVLDEIVEESLTKAALWDEVKDRLHSSA--LSLSGGQQQRLCIAR 177
Query: 158 AFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDR 217
+ P++LL+DEP SALD ++ + + +L E S+++VTHN+++A+ + DR
Sbjct: 178 TLAMKPAVLLLDEPASALDPISNAKIEELITELKEE-----YSIIIVTHNMQQALRVSDR 232
Query: 218 VLVF 221
F
Sbjct: 233 TAFF 236
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 81.6 bits (201), Expect = 4e-16
Identities = 69/226 (30%), Positives = 106/226 (46%), Gaps = 28/226 (12%)
Query: 16 DICQSFSLKKI-SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLR-------IIAGLV 67
I L KI GN + + + + EI G +G SG GKST+LR ++ G
Sbjct: 6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGF- 64
Query: 68 SPSSGQVLFKGKKIK----DP---PKDISVVFQTFALFPWLTVLENVELGLKA---KGID 117
G V F G+ + DP + I +VFQ F +++ +NV GL+ KG D
Sbjct: 65 -RFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFS-MSIFDNVAFGLRLNRYKG-D 121
Query: 118 KEERRKRALSAIDLIG-LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176
+R K AL L + +SGG QR+ ARA P +LL+DEP SALD
Sbjct: 122 LGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALD 181
Query: 177 VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFS 222
+ + +++L + ++ +VTHN+++A+ + D FS
Sbjct: 182 PIATRRVEELMVELKKD-----YTIALVTHNMQQAIRVADTTAFFS 222
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 81.6 bits (201), Expect = 4e-16
Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 28/239 (11%)
Query: 15 QDICQSFSLKKIS---GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRI---IAGLVS 68
Q + + +K +S ++ ++ ++ ++ ++G SG GKST ++ I+ L
Sbjct: 2 QQLIPAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEG 61
Query: 69 PS--SGQVLFKGKKIKDPP-------KDISVVFQTFALFPWLTVLENVELGLKAKG---- 115
P G V F G+ I DP + I +VFQ FP +++ ENV G++
Sbjct: 62 PVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQ 120
Query: 116 IDKEERRKRALSAIDLIG--LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFS 173
D +E + AL L D + +SGG QR+ ARA + P +LLMDEP S
Sbjct: 121 ADLDEIVESALKGAALWQEVKDKLNKS-ALGLSGGQQQRLCIARALAIKPKVLLMDEPCS 179
Query: 174 ALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV 232
ALD + + + L E + I VTHN+++A + D FS++ RI + V
Sbjct: 180 ALDPIATMKVEELIHSLRSELTIAI-----VTHNMQQATRVSDFTAFFSTDESRIGQMV 233
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc.
Length = 708
Score = 81.3 bits (201), Expect = 4e-16
Identities = 58/233 (24%), Positives = 107/233 (45%), Gaps = 30/233 (12%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
+ I D+ S+ +L ++ + ++G SGSGKSTL +++ G S
Sbjct: 474 IVINDVSYSYGY-----GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS 528
Query: 72 GQVLFKGKKIKDPPKD-----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRAL 126
G++L G +KD + I+ + Q +F ++LEN+ LG K ++ A
Sbjct: 529 GEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKENV--SQDEIWAAC 585
Query: 127 SAIDL--------IGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVL 178
++ +G S + ISGG QR+ ARA + +L++DE S LD +
Sbjct: 586 EIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTI 645
Query: 179 TAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
T + + +L++ L ++++ V H + A D+++V G+I E+
Sbjct: 646 TEKKIVNNLLN------LQDKTIIFVAHRLSVAK-QSDKIIVLDH--GKIIEQ 689
>gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 81.2 bits (200), Expect = 5e-16
Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 31/201 (15%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPS---SGQVLFKGKKIKDPP- 85
+L VN ++ + L+G SG GKST +R + + + P G + G I DP
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 86 ------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKE----ERRKRALSAIDLIG-- 133
K + +VFQ FP ++ +NV GL+ G D E ER + +L A L
Sbjct: 78 DVVELRKKVGMVFQKPNPFP-KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEV 136
Query: 134 ---LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
LD +SA +SGG QR+ AR V P ++LMDEP SALD ++ + DLI
Sbjct: 137 KDKLD--KSA--LGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIE-DLIHK 191
Query: 191 WIEGRLPIESMLMVTHNIEEA 211
E ++++VTHN+++A
Sbjct: 192 LKEDY----TIVIVTHNMQQA 208
>gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 242
Score = 80.7 bits (200), Expect = 7e-16
Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 22/176 (12%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
+L ++ + SF L+ ++ V GE+ ++G +G+GK+T++ +I G P
Sbjct: 2 ILYLEGLSVSF------DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD 55
Query: 71 SGQVLFKGKKI-KDPPKDISVV-----FQTFALFPWLTVLENVELGLKAK---------G 115
G VLF G + P I+ FQ +F LTV EN+EL L
Sbjct: 56 EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFR 115
Query: 116 IDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEP 171
+ EE+ R ++ IGL +S G Q + + P LLL+DEP
Sbjct: 116 LSAEEKD-RIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEP 170
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 80.1 bits (198), Expect = 9e-16
Identities = 62/216 (28%), Positives = 105/216 (48%), Gaps = 39/216 (18%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS--P---SSGQVLFKGKKIK 82
G L +N +++ ++ +G SG GKSTLLR + P + G++L G+ I
Sbjct: 24 GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL 83
Query: 83 DPPKDISV-------VFQTFALFPWLTVLENVELGLK-----AKGIDKEERRKRALSAID 130
P +DI++ VFQ FP +++ +N+ G++ ++ + +ER + AL+
Sbjct: 84 TPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRA-EMDERVEWALTKAA 141
Query: 131 LIGLDGFE-----SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD-VLTA--EN 182
L E +SGG QR+ AR + P +LL+DEP SALD + T E
Sbjct: 142 LWN----EVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE 197
Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRV 218
L T+L + ++++VTHN+++A D
Sbjct: 198 LITELKQDY--------TVVIVTHNMQQAARCSDYT 225
>gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 79.9 bits (197), Expect = 1e-15
Identities = 62/241 (25%), Positives = 115/241 (47%), Gaps = 30/241 (12%)
Query: 6 IKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAG 65
+ D+ +L ++++ F +K L+ L+ +++ +I ++G SGSGKSTL+ G
Sbjct: 16 LSDDIILRVKNLYCVFD-EKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNG 74
Query: 66 LVSPSSGQVLFKG------------------KKIKDPP---KDISVVFQ--TFALFPWLT 102
L+ G + KKIK+ + +S+VFQ + LF T
Sbjct: 75 LIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DT 133
Query: 103 VLENVELGLKAKGIDKEERRKRALSAIDLIGLD-GFESAHTTEISGGMLQRVGFARAFVV 161
+ +++ G A G+ K E +K A ++ +GLD + +SGG +RV A +
Sbjct: 134 IEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAI 193
Query: 162 FPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
P +L+ DEP + LD E+ LI ++ + +++ ++TH +E + + D V+V
Sbjct: 194 QPEILIFDEPTAGLDP-KGEHEMMQLI---LDAKANNKTVFVITHTMEHVLEVADEVIVM 249
Query: 222 S 222
Sbjct: 250 D 250
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 79.8 bits (196), Expect = 1e-15
Identities = 65/216 (30%), Positives = 112/216 (51%), Gaps = 24/216 (11%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSG-----------QVLFKGKK 80
VLD+V+ + + L+G +GSGK+T LR + + SG + +F +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 81 IKDPPKDISVVFQTFALFPWLTVLENVELGLKA-KGIDKEERRKRALSAIDLIGL-DGFE 138
+ + + + ++FQ FP +++++NV G++A K + ++E R A + + +GL D +
Sbjct: 96 VLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVK 154
Query: 139 ---SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195
S +SGG Q + AR V P +LL+DEP SALD T E I+ +I
Sbjct: 155 DRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEK-----IEEFIRSL 209
Query: 196 LPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
++++VTHN+ +A + DR +F GR+ EE
Sbjct: 210 ADRLTVIIVTHNLAQAARISDRAALFFD--GRLVEE 243
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 79.6 bits (196), Expect = 1e-15
Identities = 69/210 (32%), Positives = 106/210 (50%), Gaps = 31/210 (14%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL-----VSPSSGQVLFKGKKIKDPPKD 87
L+ +N + +I L+G SG GKST LR + + G+VL GK I D KD
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD--KD 77
Query: 88 ISV---------VFQTFALFPWLTVLENVELGLKAKGI-DKEERRKRALSAI------DL 131
+ V VFQ FP +++ +NV G + GI DK+E K A+ D
Sbjct: 78 VDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDE 136
Query: 132 IGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLW 191
+ D +SA ++SGG QR+ AR V P ++LMDEP SALD ++ + +++L
Sbjct: 137 VKDDLKKSA--LKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELK 194
Query: 192 IEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
E ++++VTHN+++A + D F
Sbjct: 195 KE-----YTIVIVTHNMQQASRVSDYTAFF 219
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 79.3 bits (195), Expect = 2e-15
Identities = 63/204 (30%), Positives = 104/204 (50%), Gaps = 24/204 (11%)
Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPS---SGQVLFKGKKIKDPPKD--- 87
V+ + + ++G SG GKST+LR I + + PS +G++L I D D
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82
Query: 88 ----ISVVFQTFALFPWLTVLENVELGLKAKG-IDKEERRKRALSAIDLIGL-----DGF 137
+ +VFQ FP +++ +NV G K G +++ E + S++ + L D
Sbjct: 83 IRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL 142
Query: 138 ESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197
+S + E+SGG QR+ AR V P ++LMDEP SALD ++ T I+ IE
Sbjct: 143 KS-NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPIS-----TLKIEELIEELKE 196
Query: 198 IESMLMVTHNIEEAVLMCDRVLVF 221
++++VTHN+++A + D F
Sbjct: 197 KYTIIIVTHNMQQAARVSDYTAFF 220
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 79.1 bits (195), Expect = 2e-15
Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 39/222 (17%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPS---SGQVLFKGKKIK 82
G+ L + V ++ +I +G SG GKST+LR L + P G+V F GK +
Sbjct: 21 GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLY 80
Query: 83 DPPKD-------ISVVFQTFALFPWLTVLENVELGLKAKGI--DKEERRKRALSAI---- 129
P D I +VFQ FP ++ +N+ G + G D +E +R+L
Sbjct: 81 APDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWD 139
Query: 130 ---DLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD---VLTAENL 183
D + G +SGG QR+ ARA V P ++LMDEP SALD L E L
Sbjct: 140 EVKDKLKQSGLS------LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEEL 193
Query: 184 RTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNP 225
+L + + ++++VTHN+++A + D F+
Sbjct: 194 MHELKEQY--------TIIIVTHNMQQAARVSDMTAFFNVEL 227
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 78.8 bits (194), Expect = 2e-15
Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 8/144 (5%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVF 92
L+ ++F V GEIVG++G +GSGKSTL +IAG+ P+ G V KG +++
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA--------ALIA 91
Query: 93 QTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQR 152
+ L LT +EN+EL G+ KE+ ++ I+ + F S GM R
Sbjct: 92 ISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSR 151
Query: 153 VGFARAFVVFPSLLLMDEPFSALD 176
+GFA + + P +L++DE S D
Sbjct: 152 LGFAISVHINPDILVIDEALSVGD 175
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 78.7 bits (194), Expect = 2e-15
Identities = 67/239 (28%), Positives = 123/239 (51%), Gaps = 26/239 (10%)
Query: 11 LLEIQDICQSFSLK-----KISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAG 65
+L+++++ F L+ +++ + ++KV+F++ GE + L+G SGSGKST R +
Sbjct: 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLR 372
Query: 66 LVSPSSGQVLFKGKKIKDPP--------KDISVVFQT--FALFPWLTVLENVELGLKAKG 115
LV G+++F G++I +DI +FQ +L P TV +++ L+ G
Sbjct: 373 LVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG 432
Query: 116 I-DKEERRKRALSAIDLIGLDGFESA--HTTEISGGMLQRVGFARAFVVFPSLLLMDEPF 172
+ + R ++ +GL E A + E SGG QR+ ARA + P +++ DE
Sbjct: 433 LLPGKAAAARVAWLLERVGLLP-EHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAV 491
Query: 173 SALDVLTAENLRTDLIDLWIEGRLPIE-SMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
SALDV ++R +I+L ++ + + L ++H++ + RV V G+I E
Sbjct: 492 SALDV----SIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVM--YLGQIVE 544
Score = 59.1 bits (143), Expect = 2e-09
Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 42/217 (19%)
Query: 36 VNFNVSSGEIVGLLGRSGSGKS----TLLRII---AGLVSPSSGQVLF--KGKKIKDPPK 86
++F++ GE + ++G SGSGKS L+R++ GLV ++L + +++ + +
Sbjct: 35 LSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQ--CDKMLLRRRSRQVIELSE 92
Query: 87 ------------DISVVFQ--TFALFPWLTVLENVELGLKA-KGIDKEERRKRALSAIDL 131
D++++FQ +L P TV E + ++ +G +EE A +D
Sbjct: 93 QSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQ 152
Query: 132 IGLDGFE---SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV-LTAENLRTDL 187
+ + + S + ++SGGM QRV A A P++L+ DEP +ALDV + A+ L+ L
Sbjct: 153 VRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ--L 210
Query: 188 IDLWIEGRLPIESMLM----VTHNIEEAVLMCDRVLV 220
I ++ + M M +TH++ + DRVLV
Sbjct: 211 I------KVLQKEMSMGVIFITHDMGVVAEIADRVLV 241
>gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 78.9 bits (194), Expect = 3e-15
Identities = 66/216 (30%), Positives = 110/216 (50%), Gaps = 31/216 (14%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLR-------IIAGLVSPSSGQVLFKGKK 80
G L L V+ + + +I+ +G SG GKSTLLR +I G + G++L++ +
Sbjct: 31 GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPG--AKVEGRLLYRDRN 88
Query: 81 IKDPP-------KDISVVFQTFALFPWLTVLENVELGLKAKG----IDK--EERRKRALS 127
I D + + +VFQ FP ++ EN+ +A G +D+ E+ +RA
Sbjct: 89 IYDSQINSVKLRRQVGMVFQRPNPFP-KSIYENIAFAPRANGYKGNLDELVEDSLRRA-- 145
Query: 128 AIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187
AI D + T +SGG QR+ ARA + P +LLMDEP SALD ++ +
Sbjct: 146 AIWEEVKDKLK-EKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELC 204
Query: 188 IDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSS 223
++L + +++MVTHN+++A + D F++
Sbjct: 205 LELKEQ-----YTIIMVTHNMQQASRVADWTAFFNT 235
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 78.5 bits (193), Expect = 3e-15
Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 25/220 (11%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS-----GQVLFKGKKIKDPP- 85
+L+ V+ + ++ ++G SG GKST L+ + + S G+V F + I +
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81
Query: 86 ------KDISVVFQTFALFPWLTVLENVELGLKAKG----IDKEERRKRALSAIDL---I 132
+ +S+V LFP ++V +NV G+K G ++ ++ + AL DL I
Sbjct: 82 NLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEI 140
Query: 133 GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWI 192
+SA ++SGG QR+ ARA V P +LLMDEP LD + + + + + L +
Sbjct: 141 KHKIHKSA--LDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRL 198
Query: 193 EGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV 232
L +M++V+HN+ + + D F N RI + V
Sbjct: 199 RSEL---TMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 78.4 bits (193), Expect = 4e-15
Identities = 63/213 (29%), Positives = 103/213 (48%), Gaps = 37/213 (17%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS--PS---SGQVLFKGKKIKDPP-- 85
L +N ++ E+ ++G SG GKST ++ + +V PS +G++L++ + I D
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 86 -----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGF--- 137
++ +VFQ FP ++ +NV G K GI + K+ L I L G
Sbjct: 100 VEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGI----KDKKTLDEIVEKSLRGAAIW 154
Query: 138 ----ESAHTTE--ISGGMLQRVGFARAFVVFPSLLLMDEPFSALD---VLTAENLRTDLI 188
+ H +SGG QR+ AR + P ++LMDEP SALD L E L +L
Sbjct: 155 DELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK 214
Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
+ S+++VTHN+++A + D+ F
Sbjct: 215 KDY--------SIIIVTHNMQQAARISDKTAFF 239
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 78.3 bits (193), Expect = 4e-15
Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 23/209 (11%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV-----SPSSGQVLFKGKKIK 82
G+ V+ V+ + + L+G SG GKSTLLR L+ + G+V G+ I
Sbjct: 15 GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIY 74
Query: 83 DPP-------KDISVVFQTFALFPWLTVLENVELGLKAKGIDK-----EERRKRALSAID 130
P +++ +VFQ FP LT+ +NV +G+K G+ K +ER + AL
Sbjct: 75 SPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAA 134
Query: 131 LIG-LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLID 189
L + + + + +SGG QR+ ARA + P +LLMDEP + +D + + L +
Sbjct: 135 LWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE 194
Query: 190 LWIEGRLPIESMLMVTHNIEEAVLMCDRV 218
L E ++++VTH+ +A + D V
Sbjct: 195 LKKE-----YTIVLVTHSPAQAARVSDYV 218
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 78.1 bits (192), Expect = 4e-15
Identities = 65/219 (29%), Positives = 106/219 (48%), Gaps = 20/219 (9%)
Query: 17 ICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL---VSPSSGQ 73
I ++ +L G L +N + +I L+G SG GKST LR + ++ G
Sbjct: 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGL 61
Query: 74 VLFKGKKIKDPP-----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSA 128
V +GK +K+ K++ +VFQ +F ++ EN+ K G+ K + + AL
Sbjct: 62 VEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVV 120
Query: 129 IDLIGLDGFESA------HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAEN 182
L + FE + +SGG QR+ ARA + P LLL+DEP SALD ++
Sbjct: 121 DCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPIS--- 177
Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
+ +I+ ++ SM+MVTHN+++ + D F
Sbjct: 178 --SGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFF 214
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 78.1 bits (192), Expect = 4e-15
Identities = 75/267 (28%), Positives = 128/267 (47%), Gaps = 35/267 (13%)
Query: 24 KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF------- 76
KK L+ + ++ ++G +GSGKST++++ GL+ +GQ +
Sbjct: 18 KKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPA 77
Query: 77 ---KGKKIKDPPKDISVVFQ--TFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDL 131
K K++K K+I +VFQ + LF T+ +++ G G +K+E K+ + L
Sbjct: 78 NLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKL 136
Query: 132 IGL-DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
+ L + + E+SGG +RV A + + L++DEP LD E D I+L
Sbjct: 137 VQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEE----DFINL 192
Query: 191 WIEGRLPIE---SMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLS-PE 246
+ RL E ++MVTHN+++ + + D V+V + E +ISI P S E
Sbjct: 193 FE--RLNKEYKKRIIMVTHNMDQVLRIADEVIV-------MHEGKVISIGSPFEIFSNQE 243
Query: 247 FRQIVE----KIYALMTKKEEKRLNPL 269
+E K+Y LM K + K ++ L
Sbjct: 244 LLTKIEIDPPKLYQLMYKLKNKGIDLL 270
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 78.0 bits (192), Expect = 5e-15
Identities = 59/193 (30%), Positives = 97/193 (50%), Gaps = 14/193 (7%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD--ISV 90
L +F V G I L+G +GSGKSTL + + G V +SG++ G+ + + ++
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82
Query: 91 VFQTFAL---FPWLTVLENVELG----LKAKGIDKEERRKRALSAIDLIGLDGFESAHTT 143
V Q+ + FP L V + V +G + K+ R+ +A+ + + F
Sbjct: 83 VPQSEEVDWSFPVL-VEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG 141
Query: 144 EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLM 203
E+SGG +RV ARA ++L+DEPF+ +DV T + + L +L EG+ +ML+
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGK----TMLV 197
Query: 204 VTHNIEEAVLMCD 216
THN+ CD
Sbjct: 198 STHNLGSVTEFCD 210
>gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 77.7 bits (192), Expect = 6e-15
Identities = 62/223 (27%), Positives = 111/223 (49%), Gaps = 24/223 (10%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
LL+++ I ++F K L NV G ++ L+G +G+GKST+++++ G+ +
Sbjct: 4 LLQLKGIDKAFPGVK------ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD 57
Query: 71 SGQVLFKGKKIK-DPPKD-----ISVVFQTFALFPWLTVLENVELGLKAK----GIDKEE 120
+G +L+ GK++ + PK I ++ Q L P LT+ EN+ LG + ID ++
Sbjct: 58 AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKK 117
Query: 121 RRKRALSAIDLIGLDGFESAHT--TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVL 178
A + + L S+ E+S G Q V A+ +++MDEP AL
Sbjct: 118 MYAEADKLLARLNLR--FSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175
Query: 179 TAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
E+L + +L +GR ++ ++H ++E +CD V VF
Sbjct: 176 ETESLFRVIRELKSQGR----GIVYISHRLKEIFEICDDVTVF 214
Score = 58.1 bits (141), Expect = 4e-09
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 42/225 (18%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-DPPKD---- 87
++ V+F + GEI+G+ G G+G++ L++++ G + +SG V G ++ P+D
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327
Query: 88 ----ISVVFQTFALFPWLTVLENV------ELGLKAKGIDKEERRKRALSAIDL------ 131
IS + L ++V EN+ + + ++ I L
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTP 387
Query: 132 -----IGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186
IGL +SGG Q+V AR + P +L++DEP +DV A+
Sbjct: 388 SMEQAIGL----------LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDV-GAKKEIYQ 436
Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
LI+ + L S+++V+ + E + M DR+LV GRI+ E
Sbjct: 437 LINQFKAEGL---SIILVSSEMPEVLGMSDRILVMHE--GRISGE 476
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 77.1 bits (190), Expect = 8e-15
Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 12/207 (5%)
Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KDPP 85
L V+FN+ G+ ++G +GSGKST+ +++ G+ SG++ + + I +
Sbjct: 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLR 82
Query: 86 KDISVVFQTFA-LFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTE 144
K I +VFQ F V +V GL+ + +E +R A+ + +
Sbjct: 83 KHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNA 142
Query: 145 ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMV 204
+SGG QRV A + PS++++DE S LD +NL + + E + I S +
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIIS---I 199
Query: 205 THNIEEAVLMCDRVLVFSSNPGRIAEE 231
TH++ EA + D V+V N G + +E
Sbjct: 200 THDLSEA-MEADHVIVM--NKGTVYKE 223
>gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 76.7 bits (189), Expect = 1e-14
Identities = 58/209 (27%), Positives = 101/209 (48%), Gaps = 20/209 (9%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KDPPKD 87
L ++ ++ G LLG +G+GKSTLL + G+ P G+V G+++ K
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80
Query: 88 ISVVF-----QTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHT 142
+ +VF Q F+ TV ++V G G+DK+E +R A+ + + F
Sbjct: 81 VGLVFQDPDDQVFS----STVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP 136
Query: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESML 202
+S G +RV A + P ++++DEP + LD E L L L +G+ +++
Sbjct: 137 YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGK----TVI 192
Query: 203 MVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
+ TH+++ A D+V+V GR+ E
Sbjct: 193 VATHDVDLAAEWADQVIVLKE--GRVLAE 219
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 76.8 bits (189), Expect = 1e-14
Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 18/221 (8%)
Query: 21 FSLKKIS---GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFK 77
S K+S G + L +V+ +++ GEIV L+G +G+GK+TLL + G +SG+++F
Sbjct: 6 LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFD 65
Query: 78 GKKIKDPP------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDL 131
GK I D + +++V + +F +TV EN+ +G ++++ ++R +L
Sbjct: 66 GKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMG--GFFAERDQFQERIKWVYEL 123
Query: 132 IG-LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
L +SGG Q + RA + P LLL+DEP L + + + + L
Sbjct: 124 FPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL 183
Query: 191 WIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
+G ++ +V N +A+ + DR V + G + E
Sbjct: 184 REQGM----TIFLVEQNANQALKLADRGYVLEN--GHVVLE 218
>gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 76.3 bits (188), Expect = 1e-14
Identities = 65/213 (30%), Positives = 100/213 (46%), Gaps = 36/213 (16%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLR-------IIAGLVSPSSGQVLFKGKKIKDPP 85
L V+ ++ + +G SG GKST LR I G +G++ G+ I DP
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDG--CRVTGKITLDGEDIYDPR 92
Query: 86 KD-------ISVVFQTFALFPWLTVLENVELGLKAKGI--DKEERRKRALSAIDLIGL-- 134
D + +VFQ FP ++ ENV G + G+ K E + +++ GL
Sbjct: 93 LDVVELRARVGMVFQKPNPFP-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWE 151
Query: 135 ---DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD-VLTA--ENLRTDLI 188
D T +SGG QR+ ARA V P ++LMDEP SALD + TA E L +L
Sbjct: 152 EVKDRLHEPGTG-LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR 210
Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
+ ++++VTH++++A + R F
Sbjct: 211 QNY--------TIVIVTHSMQQAARVSQRTAFF 235
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 76.2 bits (187), Expect = 1e-14
Identities = 63/219 (28%), Positives = 107/219 (48%), Gaps = 31/219 (14%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLR-------IIAGLVSPSSGQVLFKGKKIKDPP 85
L+ +N + I L+G SG GKST LR ++ G+ G V+++GK I
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGI--KIEGNVIYEGKNIYSNN 80
Query: 86 KD-------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIG----- 133
D I +VFQT F +++ +N+ G K G K++++ + L
Sbjct: 81 FDILELRRKIGMVFQTPNPF-LMSIYDNISYGPKIHGT-KDKKKLDEIVEQSLKKSALWN 138
Query: 134 -LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWI 192
+ + + +SGG QR+ AR + P+++LMDEP SALD ++ + +I+L
Sbjct: 139 EVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL-- 196
Query: 193 EGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
++++VTHN+++A + DR F + G I EE
Sbjct: 197 ---KESYTIIIVTHNMQQAGRISDRTAFFLN--GCIEEE 230
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 76.0 bits (187), Expect = 2e-14
Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 12/186 (6%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVF 92
LD ++ G+++GL+G +GSGKSTL II G +SP+ G+V G ++SV+
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG--------EVSVIA 91
Query: 93 QTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQR 152
+ L LT +EN+E + G ++E + I+ L F + S GM +
Sbjct: 92 ISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAK 151
Query: 153 VGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAV 212
+GF+ V P +L++DE S D + +D E + +++ V+HN+ +
Sbjct: 152 LGFSINITVNPDILVIDEALSVGD----QTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVR 207
Query: 213 LMCDRV 218
C ++
Sbjct: 208 QFCTKI 213
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 75.5 bits (186), Expect = 2e-14
Identities = 62/214 (28%), Positives = 107/214 (50%), Gaps = 19/214 (8%)
Query: 16 DICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVL 75
+I +SF K LD VN V I L+G +G+GKSTLL+ + G+ SG +L
Sbjct: 3 NISKSFPGVK------ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSIL 56
Query: 76 FKGKKI-----KDPPKD-ISVVFQTFALFPWLTVLENVELG---LKAKGIDKEERRKRAL 126
F+GK+I K+ ++ IS+V Q L +V++N+ LG K +D+++ +
Sbjct: 57 FQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTK 116
Query: 127 SAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186
+ D + +D A +S +Q + A+AF +++MDEP S+L +L T
Sbjct: 117 AIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI 176
Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLV 220
+ L G ++ ++H +EE +CD + +
Sbjct: 177 IRKLKERGC----GIVYISHKMEEIFQLCDEITI 206
Score = 49.0 bits (117), Expect = 2e-06
Identities = 52/218 (23%), Positives = 100/218 (45%), Gaps = 32/218 (14%)
Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK--DPPKDISVVFQ 93
V+F++ GEI+G+ G G+ ++ ++ + G+ S+G + GKKI + + I+
Sbjct: 267 VSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAIN---H 323
Query: 94 TFAL----------FPWLTV-----LENVELGLKAKGIDKEERRKRALS-AIDLIGLDGF 137
FAL + +L + + N+ G+ R K ID + +
Sbjct: 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVK-- 381
Query: 138 ESAHTTEI---SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194
H T+I SGG Q+V R + P +L++DEP +DV + + +L +
Sbjct: 382 TPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKD 441
Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV 232
+ +++++ + E + + DR+LV S+ G +A V
Sbjct: 442 K----GIIIISSEMPELLGITDRILVMSN--GLVAGIV 473
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 75.4 bits (185), Expect = 3e-14
Identities = 66/208 (31%), Positives = 100/208 (48%), Gaps = 25/208 (12%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPSS---GQVLF--KGKK 80
G L +N V ++ L+G SG GKST LR + + P + G+++
Sbjct: 27 GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVN 86
Query: 81 IKDPPKD-------ISVVFQTFALFPWLTVLENVELGLKAKGIDK----EERRKRALSAI 129
I P D IS+VFQ FP ++ ENV GL+ +G+ + EER + AL
Sbjct: 87 ILSPEVDPIEVRMRISMVFQKPNPFP-KSIFENVAYGLRIRGVKRRSILEERVENALRNA 145
Query: 130 DLIG-LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188
L + +SGG QR+ ARA P +LL DEP SALD + ++ +
Sbjct: 146 ALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELIS 205
Query: 189 DLWIEGRLPIESMLMVTHNIEEAVLMCD 216
DL + ++ I L+VTHN+++A + D
Sbjct: 206 DL--KNKVTI---LIVTHNMQQAARVSD 228
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 74.7 bits (184), Expect = 4e-14
Identities = 57/207 (27%), Positives = 99/207 (47%), Gaps = 19/207 (9%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD-PPK 86
G +L+ ++ ++ +G+I L+G +G GKSTLL+ A L++P SG V K I +
Sbjct: 13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSR 72
Query: 87 DISVVFQTFALFPW-------LTVLENVELG----LKAKGIDKEERRKRALSAIDLIGLD 135
++ + AL P +TV E V G L G E R A++ ++
Sbjct: 73 QLA---RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN 129
Query: 136 GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGR 195
T++SGG QR A ++L+DEP + LD+ N + +L+ L E
Sbjct: 130 HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI----NHQVELMRLMRELN 185
Query: 196 LPIESMLMVTHNIEEAVLMCDRVLVFS 222
++++ V H++ +A CD ++V +
Sbjct: 186 TQGKTVVTVLHDLNQASRYCDHLVVLA 212
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 74.6 bits (183), Expect = 5e-14
Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 29/209 (13%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS-----SGQVLFKGKKI------ 81
L +N ++ E+ ++G SG GKST ++ + ++ +G++ + G I
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 82 -KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGI-DKEERRKRALSAIDLIGL-DGFE 138
+ K+I +VFQ FP ++ +NV G + G +K++ ++ ++ + L D +
Sbjct: 88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK 146
Query: 139 ---SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD---VLTAENLRTDLIDLWI 192
+SGG QR+ ARA P +LLMDEP SALD E L L + +
Sbjct: 147 DRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKY- 205
Query: 193 EGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
++++VTHN+++A + D+ F
Sbjct: 206 -------TIVIVTHNMQQAARVSDQTAFF 227
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related.
Length = 585
Score = 74.5 bits (183), Expect = 5e-14
Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 11/154 (7%)
Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KDPPKDISV 90
V+F +G+ V ++G +G+GK+TL+ ++ + P+ GQ+L G I + K I+
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIAT 413
Query: 91 VFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-----GLDGFESAHTTEI 145
VFQ LF ++ EN+ LG + ++ +A +A D I G D +
Sbjct: 414 VFQDAGLFN-RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRL 472
Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179
SGG QR+ ARA + +L++DE SALDV T
Sbjct: 473 SGGERQRLAIARAILKNAPILVLDEATSALDVET 506
>gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 74.2 bits (182), Expect = 6e-14
Identities = 69/215 (32%), Positives = 105/215 (48%), Gaps = 31/215 (14%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPS---SGQVLFKGKKIK 82
G + KVN ++ S + ++G SG GKST LR I + + PS +G ++F G+ I
Sbjct: 50 GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109
Query: 83 DPPKD-------ISVVFQTFALFPWLTVLENVELGLKAKGI-DKE------ERRKRALSA 128
D I +VFQ FP ++ +N+ G + GI DK+ E+ R +
Sbjct: 110 GKFTDEVLLRKKIGMVFQKPNPFP-KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAAL 168
Query: 129 IDLIG--LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186
D + LD + +SGG QR+ AR V P +LL+DEP SALD + D
Sbjct: 169 WDEVSDRLD----KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIE-D 223
Query: 187 LIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVF 221
LI + G I ++VTHN+++A + D + F
Sbjct: 224 LIQ-ELRGSYTI---MIVTHNMQQASRVSDYTMFF 254
>gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 74.2 bits (183), Expect = 7e-14
Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 36/202 (17%)
Query: 22 SLKKISGNLL------VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVL 75
SL I G L +LD ++ E V L+GR+G+GKSTL++I+ G V G+++
Sbjct: 2 SLISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRII 61
Query: 76 FKGKKI-----KDPPKDIS-VVF---------QTFALFPWLTVLENVELGLKAKGIDKEE 120
++ I +DPP+++ V+ Q L + + VE K +++
Sbjct: 62 YEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELA 121
Query: 121 R-------------RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLL 167
+ R + +GLD A + +SGG L++ RA V P +LL
Sbjct: 122 KLQEQLDHHNLWQLENRINEVLAQLGLDP--DAALSSLSGGWLRKAALGRALVSNPDVLL 179
Query: 168 MDEPFSALDVLTAENLRTDLID 189
+DEP + LD+ T E L L
Sbjct: 180 LDEPTNHLDIETIEWLEGFLKT 201
Score = 42.6 bits (101), Expect = 2e-04
Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 47/223 (21%)
Query: 26 ISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP 85
I G LV D + V G+ + L+G +G GK+TLL+++ G + SG++ G K+
Sbjct: 329 IDGKQLVKD-FSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI-HCGTKL---- 382
Query: 86 KDISVVFQTFA-LFPWLTVLENVELGLKAKGIDKEERR------------KRALSAIDLI 132
+++ Q A L P TV++N+ G + ++ R KRA++ +
Sbjct: 383 -EVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPV--- 438
Query: 133 GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWI 192
+SGG R+ AR F+ +LL++DEP + LDV T E L +L+D +
Sbjct: 439 ----------KALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLE-LLEELLDSY- 486
Query: 193 EGRLPIESMLMVTHN---IEEAVLMCDRVLVFSSNPGRIAEEV 232
+G + L+V+H+ ++ V C +F N G+I V
Sbjct: 487 QGTV-----LLVSHDRQFVDNTVTEC---WIFEGN-GKIGRYV 520
>gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 72.8 bits (179), Expect = 2e-13
Identities = 64/234 (27%), Positives = 109/234 (46%), Gaps = 26/234 (11%)
Query: 9 NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKS----TLLRIIA 64
+ +E+++I + ++ V+ + G ++ L+G SGSGKS L I+
Sbjct: 2 PQQIELRNIA-------LQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP 54
Query: 65 GLVSPSSGQVLFKGKKI---KDPPKDISVVFQT--FALFPWLTVLENVELGLKAKGIDKE 119
V ++G+VL GK + + I+ + Q A P T+ + A G K
Sbjct: 55 AGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG--KP 112
Query: 120 ERRKRALSAIDLIGLDGFE---SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176
+A++ +GL+ + E+SGGMLQR+ A A + ++ DEP + LD
Sbjct: 113 ADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLD 172
Query: 177 VLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
V+ A+ DL++ ++ R ML+VTH++ + D V V S GRI E
Sbjct: 173 VV-AQARILDLLESIVQKRAL--GMLLVTHDMGVVARLADDVAVMSH--GRIVE 221
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 72.2 bits (177), Expect = 2e-13
Identities = 46/147 (31%), Positives = 81/147 (55%), Gaps = 5/147 (3%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK--DPPKDIS 89
V ++F+V +GE + + G +G+GK+TLLR++AGL+ SGQ+ GK D + ++
Sbjct: 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMA 85
Query: 90 VVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGM 149
+ L L+ LEN+ G+ ++ SA+ ++GL G+E ++S G
Sbjct: 86 YLGHLPGLKADLSTLENLHF---LCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQ 142
Query: 150 LQRVGFARAFVVFPSLLLMDEPFSALD 176
+R+ AR ++ L L+DEP++ LD
Sbjct: 143 KKRLALARLWLSPAPLWLLDEPYANLD 169
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 72.1 bits (176), Expect = 3e-13
Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 31/237 (13%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLR-------IIAGLVSPSSGQVLFKG-----K 79
VL +N ++ ++ +G SG GKST LR +I G + G++ F G K
Sbjct: 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEG--TSHEGEIYFLGTNTRSK 154
Query: 80 KIK--DPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKE-------ERRKRALSAID 130
KI + I +VFQ F +++ +NV G + GI+ E+ ++ + D
Sbjct: 155 KISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWD 213
Query: 131 LIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
+ D ++ + +SGG QR+ ARA + P +LLMDEP SALD + + +++L
Sbjct: 214 EVKDDLDKAGNA--LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILEL 271
Query: 191 WIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSPEF 247
+ S+++VTH++ +A + D + F A E HP+N+ + ++
Sbjct: 272 KKK-----YSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKNKRTKDY 323
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 71.6 bits (176), Expect = 4e-13
Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 12/155 (7%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP-----KD 87
L +NF + +G+ V L+GRSGSGKST+ ++ G++L G ++D
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418
Query: 88 ISVVFQTFALFPWLTVLENVELGLKAKGIDKE-ERRKRALSAIDLI-----GLDGFESAH 141
+++V Q LF T+ N+ + ++ E R A+D I GLD +
Sbjct: 419 VALVSQNVHLFN-DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGEN 477
Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176
+SGG QR+ ARA + +L++DE SALD
Sbjct: 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 71.4 bits (175), Expect = 4e-13
Identities = 45/167 (26%), Positives = 96/167 (57%), Gaps = 13/167 (7%)
Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KDPPKDISV 90
++F + G+ + ++G +GSGKSTL +++AG++ P+SG++L + + I +
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRM 91
Query: 91 VFQ--TFALFPWLTVLENVELGLKAK-GIDKEERRKRALSAIDLIGL-DGFESAHTTEIS 146
+FQ + +L P + + ++ L+ ++ E+R K+ + + +GL S + ++
Sbjct: 92 IFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLA 151
Query: 147 GGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIE 193
G QR+G ARA ++ P +++ DE ++LD+ ++R+ LI+L +E
Sbjct: 152 PGQKQRLGLARALILRPKVIIADEALASLDM----SMRSQLINLMLE 194
>gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 70.6 bits (174), Expect = 7e-13
Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 25/212 (11%)
Query: 8 DNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLV 67
D L + ++ ++ VL ++ + +GE V LLGR+G GKSTLL+++
Sbjct: 335 DQVSLTLNNVSFTYP----DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390
Query: 68 SPSSGQVLFKGKKIKDPPKD-----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR 122
P G++L G+ I D + ISVV Q LF T+ +N+ L +E
Sbjct: 391 DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAAPNAS---DEAL 446
Query: 123 KRALSAIDL-------IGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSAL 175
L + L GL+ + ++SGG +R+G ARA + LLL+DEP L
Sbjct: 447 IEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGL 506
Query: 176 DVLTAENLRTDLIDLWIEGRLPIESMLMVTHN 207
D T E +L+ + + ++LM+TH
Sbjct: 507 DAET-ERQILELLAEHAQNK----TVLMITHR 533
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 70.6 bits (173), Expect = 8e-13
Identities = 63/216 (29%), Positives = 103/216 (47%), Gaps = 23/216 (10%)
Query: 20 SFSLKKIS----GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVL 75
+F+L+ +S G L L ++ +G++ GL+G +GSGKSTLL+++ PS G++L
Sbjct: 11 TFALRNVSFRVPGRTL-LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEIL 69
Query: 76 FKGKKI-----KDPPKDISVVFQTFALFPWLTVLENVELGL----KAKGIDKEERRKRAL 126
+ + K + ++ + Q +TV E V +G A G R++
Sbjct: 70 LDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVE 129
Query: 127 SAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD 186
AI L+GL +SGG QR A LL+DEP SALD+ + D
Sbjct: 130 EAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH----QVD 185
Query: 187 LIDLWIEGRLPIE---SMLMVTHNIEEAVLMCDRVL 219
++ L + RL E +++ V H+I A CD ++
Sbjct: 186 VLAL-VH-RLSQERGLTVIAVLHDINMAARYCDYLV 219
>gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 70.2 bits (172), Expect = 1e-12
Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 38/262 (14%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-----DPPK 86
VL ++F +S E VG++GR+G+GKS++L + +V G++L G I D K
Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313
Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-----GLDGFESAH 141
+ ++ Q LF TV N++ + D E +RA D+I GLD S
Sbjct: 1314 VLGIIPQAPVLFSG-TVRFNLDPFNEHNDADLWESLERA-HLKDVIRRNSLGLDAEVSEA 1371
Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD-LIDLWIEGRLPIES 200
S G Q + ARA + +L++DE +A+DV RTD LI I +
Sbjct: 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDV------RTDALIQKTIREEFKSCT 1425
Query: 201 MLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSPE---FRQIV------ 251
ML++ H + ++ CDR+LV + GR+ E P N LS E F ++V
Sbjct: 1426 MLIIAHRL-NTIIDCDRILVLDA--GRVVE-----FDTPENLLSNEGSAFSKMVQSTGAA 1477
Query: 252 --EKIYALMTKKEEKRLNPLEN 271
+ + +L+ +E RL E+
Sbjct: 1478 NAQYLRSLVFGGDEDRLAREES 1499
Score = 52.4 bits (126), Expect = 2e-07
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 22/153 (14%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP-SSGQVLFKGKKIKDPPKDISVV 91
L +N +V G +V ++G +G GK++L+ + G + P S V+ +G P +S +
Sbjct: 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVP--QVSWI 690
Query: 92 FQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAI----DLIGLDGFESAHTTE--- 144
F TV +N+ G ER +RA+ DL L G + E
Sbjct: 691 FNA-------TVRDNILFGSPFD----PERYERAIDVTALQHDLDLLPGGDLTEIGERGV 739
Query: 145 -ISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176
ISGG QRV ARA + + D+P SALD
Sbjct: 740 NISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 70.0 bits (172), Expect = 1e-12
Identities = 58/178 (32%), Positives = 95/178 (53%), Gaps = 19/178 (10%)
Query: 9 NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68
++++E +++ + F G+ L++D ++F + G IVG++G +G+GKSTL R+I G
Sbjct: 320 DKVIEAENLSKGF------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ 373
Query: 69 PSSGQVLFKGKKIKDPPKDISVVFQTF-ALFPWLTVLENVELGLKAKGIDKEERRKRA-L 126
P SG + G+ +K ++ V Q+ AL P TV E + GL + K E RA +
Sbjct: 374 PDSGTIKI-GETVK-----LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYV 427
Query: 127 SAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184
+ G D + ++SGG RV A+ ++LL+DEP + LDV E LR
Sbjct: 428 GRFNFKGSD--QQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV---ETLR 480
Score = 67.6 bits (166), Expect = 6e-12
Identities = 64/240 (26%), Positives = 99/240 (41%), Gaps = 64/240 (26%)
Query: 24 KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD 83
K + +L ++ + G +G+LG +G+GKSTLLRI+AG+ +G+
Sbjct: 12 KVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEAR-------- 63
Query: 84 PPKDISVVF--QTFALFPWLTVLENVELGLK-----------------------AKGIDK 118
P I V + Q L P TV ENVE G+ + +
Sbjct: 64 PAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAE 123
Query: 119 EERRKRALSAIDLIGLDGF------------ESAHTTEISGGMLQRVGFARAFVVFPSLL 166
+ + + A D LD A T++SGG +RV R + P +L
Sbjct: 124 QAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDML 183
Query: 167 LMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE---SMLMVTH------NIEEAVLMCDR 217
L+DEP + LD AE++ W+E L E +++ VTH N+ +L DR
Sbjct: 184 LLDEPTNHLD---AESV------AWLEQHL-QEYPGTVVAVTHDRYFLDNVAGWILELDR 233
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 69.7 bits (171), Expect = 2e-12
Identities = 62/187 (33%), Positives = 90/187 (48%), Gaps = 28/187 (14%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD---- 87
L+ VNF + G+++G+ G +GSGKSTLL +I S G + F + D
Sbjct: 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389
Query: 88 -ISVVFQTFALFPWLTVLENVELGL-KAKGIDKEERRKRALSAIDLIGL-DGFESAHTTE 144
++VV QT LF TV N+ LG A + E + A D++ L G++ TE
Sbjct: 390 RLAVVSQTPFLFS-DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYD----TE 444
Query: 145 I-------SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA----ENLRTDLIDLWIE 193
+ SGG QR+ ARA ++ +L++D+ SA+D T NLR W E
Sbjct: 445 VGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQ-----WGE 499
Query: 194 GRLPIES 200
GR I S
Sbjct: 500 GRTVIIS 506
>gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein.
Length = 617
Score = 69.3 bits (170), Expect = 2e-12
Identities = 54/163 (33%), Positives = 79/163 (48%), Gaps = 24/163 (14%)
Query: 39 NVS----SGEIVGLLGRSGSGKSTLLRIIAGLVSPS---SGQVLFKGKKI-KDPPKDISV 90
NVS GE++ ++G SG+GK+TL+ +A SG VL G I + IS
Sbjct: 43 NVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISA 102
Query: 91 VFQTFALF-PWLTVLENV----ELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHT--- 142
Q LF P LTV E++ L + + + K+E+R+R + +GL + A+T
Sbjct: 103 YVQQDDLFIPTLTVREHLMFQAHLRMPRR-VTKKEKRERVDEVLQALGL--RKCANTRIG 159
Query: 143 -----TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180
+SGG +R+ FA + P LL DEP S LD A
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMA 202
>gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 68.8 bits (169), Expect = 2e-12
Identities = 53/168 (31%), Positives = 76/168 (45%), Gaps = 42/168 (25%)
Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKD------------ 83
++ V +GEI+ L+G +G+GKSTLL +AGL P SG + F G+ ++
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 84 -----PPKDISVVFQTFALF-PWLTVLENVELGLKAKGIDKEERRKRALSAI-DLIGLDG 136
P VFQ L P T E V AL+ + + +GLD
Sbjct: 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVA---------------SALNEVAEALGLDD 118
Query: 137 FESAHTTEISGGMLQRVGFARAFV-VFPS------LLLMDEPFSALDV 177
++SGG QRV A + V+P LLL+DEP ++LDV
Sbjct: 119 KLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDV 166
>gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 68.3 bits (168), Expect = 4e-12
Identities = 56/211 (26%), Positives = 97/211 (45%), Gaps = 24/211 (11%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP-----KD 87
+NF + +G+ + L+G SG+GK++LL + G + P G + G ++++ K
Sbjct: 366 AGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKH 424
Query: 88 ISVVFQTFALFPWLTVLENVELGLKAKGIDKEE-----RRKRALSAIDLI--GLDGFESA 140
+S V Q L T+ +NV LG E+ + L+ GLD
Sbjct: 425 LSWVGQNPQLPHG-TLRDNVLLG--NPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGD 481
Query: 141 HTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES 200
+S G QR+ ARA + LLL+DEP ++LD + + + L ++
Sbjct: 482 QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRR-----QT 536
Query: 201 MLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
LMVTH +E+ + D++ V G+I ++
Sbjct: 537 TLMVTHQLED-LAQWDQIWVMQD--GQIVQQ 564
>gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PubMed:12554644) or associated with the
membrane (PubMed:11943156). The SUF system also includes
a cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA.
Length = 243
Score = 68.4 bits (168), Expect = 4e-12
Identities = 67/243 (27%), Positives = 106/243 (43%), Gaps = 40/243 (16%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAG--LVSP 69
L+I+D+ S K+I L VN V GEI ++G +GSGKSTL + IAG
Sbjct: 1 LKIKDLHVSVEDKEI------LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV 54
Query: 70 SSGQVLFKGKKIKDPPKD------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRK 123
+SG +LFKG+ + + D + + FQ P ++ LE + L A+ + R +
Sbjct: 55 TSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNAR---RSARGE 111
Query: 124 RALSAIDLIGLDGFESAHTTEISGGMLQR---VGFA----------RAFVVFPSLLLMDE 170
L +D + L + L R GF+ + ++ P L ++DE
Sbjct: 112 EPLDLLDFLKLLK-AKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDE 170
Query: 171 PFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHN--IEEAVLMCDRVLVFSSNPGRI 228
S LD+ A + + I+ R P S L++TH + + D V V GRI
Sbjct: 171 IDSGLDI-DALKIVAEGINRL---REPDRSFLIITHYQRLLNY-IKPDYVHVLLD--GRI 223
Query: 229 AEE 231
+
Sbjct: 224 VKS 226
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 67.9 bits (166), Expect = 5e-12
Identities = 54/218 (24%), Positives = 100/218 (45%), Gaps = 30/218 (13%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF---------KGKKIKD 83
+ VN G+ ++G++GSGKSTL++ I L+ P++G V K K I+
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 84 PPKDISVVFQTFALFPWLTVLEN-----VELGLKAKGIDKEERRKRALSAIDLIGLDGFE 138
K I +VFQ FP + E+ + G K ++ +E + A L+ GF
Sbjct: 83 VRKRIGMVFQ----FPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAH---RLLMDLGFS 135
Query: 139 ----SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194
S ++SGG ++++ + P ++++DEP + LD + + L L +
Sbjct: 136 RDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDE 195
Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEV 232
+++++V+H++ E D V+V G I +
Sbjct: 196 N---KTIILVSHDMNEVARYADEVIVM--KEGSIVSQT 228
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 67.8 bits (165), Expect = 6e-12
Identities = 61/207 (29%), Positives = 97/207 (46%), Gaps = 33/207 (15%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA---GLVSPS--SGQVLFKGKKIKDPPK 86
VL +N + +I ++G SG GKSTLLR + +VS + G VL + I P
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 87 DI-------SVVFQTFALFPWLTVLENVELGLKAKGIDKE-------ERRKRALSAIDLI 132
D+ +VFQ FP ++ +NV G + G + E+ R + D +
Sbjct: 79 DVVNLRKRVGMVFQQPNPFP-KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV 137
Query: 133 GLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA---ENLRTDLID 189
+ +S +SGG QR+ AR + P ++LMDEP SALD ++ E L +L
Sbjct: 138 KDNLHKSG--LALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQ 195
Query: 190 LWIEGRLPIESMLMVTHNIEEAVLMCD 216
+ ++ +VTHN+++A D
Sbjct: 196 NY--------TIAIVTHNMQQAARASD 214
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 67.7 bits (165), Expect = 6e-12
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 8/153 (5%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPK----- 86
VL +N + S + GL+G +G GKSTL ++GL+ P G VL++GK + +
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 87 --DISVVFQTFALFPWLTVLE-NVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTT 143
++ VFQ + T ++ ++ L+ G+ + E +R A+ L+ F
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQ 135
Query: 144 EISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176
+S G +RV A A V+ LL+DEP + LD
Sbjct: 136 CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLD 168
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 67.6 bits (165), Expect = 6e-12
Identities = 66/234 (28%), Positives = 108/234 (46%), Gaps = 50/234 (21%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL-----VSPSSGQVLFKGKKIKDP--- 84
L V+ ++ + L+G SG GKST LR + + + G V G+ I
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 85 ----PKDISVVFQTFALFPWLTVLENV----------ELGLKAK--GIDKEERR----KR 124
K + +VFQ+ FP ++ EN+ GL A+ G D ++ +R
Sbjct: 121 LVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVER 179
Query: 125 ALSAIDLIG-----LDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD-VL 178
+L L LD + +SGG QR+ AR V P ++LMDEP SALD +
Sbjct: 180 SLRQAALWDEVNDRLDD----NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIA 235
Query: 179 TA--ENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
T+ E+L +L + + ++++VTHN+++A + D+ VF + G + E
Sbjct: 236 TSKIEDLIEELAEEY--------TVVVVTHNMQQAARISDQTAVFLTG-GELVE 280
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 67.3 bits (164), Expect = 6e-12
Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 24/206 (11%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA---GLVSPS--SGQVLFKGKKIK 82
G L V+ + + L+G SG GKST +R + L+ G+V +G+ I
Sbjct: 23 GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82
Query: 83 DPP-------KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGL- 134
+P K++ +VFQ FP +++ +NV G + G +K++ +A+ L
Sbjct: 83 EPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALW 141
Query: 135 ----DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
D +S +SGG QR+ AR V P ++L DEP SALD ++ + +++L
Sbjct: 142 DETSDRLKSP-ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL 200
Query: 191 WIEGRLPIESMLMVTHNIEEAVLMCD 216
+ ++++VTHN+++A + D
Sbjct: 201 KKD-----YTIVIVTHNMQQAARISD 221
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 67.2 bits (164), Expect = 8e-12
Identities = 63/242 (26%), Positives = 102/242 (42%), Gaps = 38/242 (15%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS--------SGQVLFKGKKIK- 82
+L ++ + G + LLGR+G+GKSTLL+ +AG ++ +G V G+ +
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 83 -DPPK--DISVVFQTFA--LFPWLTVLENVELG----LKAKGIDKEERRKRALSAIDLIG 133
D P+ + V A F + + E V LG + G + A A+ L G
Sbjct: 76 IDAPRLARLRAVLPQAAQPAFAF-SAREIVLLGRYPHARRAGALTHRDGEIAWQALALAG 134
Query: 134 LDGFESAHTTEISGGMLQRVGFARAF---------VVFPSLLLMDEPFSALDVLTAENLR 184
T +SGG L RV FAR P LL+DEP +ALD+ L
Sbjct: 135 ATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLL 194
Query: 185 TDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLS 244
+ L + L +L + H+ A DR+ + +A+ +++ P + L+
Sbjct: 195 DTVRRLARDWNL---GVLAIVHDPNLAARHADRIAM-------LADGAIVAHGAPADVLT 244
Query: 245 PE 246
P
Sbjct: 245 PA 246
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 66.5 bits (162), Expect = 1e-11
Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 19/166 (11%)
Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDP----PK 86
+L +++F++ +G ++ L G +G+GK+TLL++IAGL++P G++LF+ + IK K
Sbjct: 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQK 74
Query: 87 DISVVFQTFALFPWLTVLENVELGLK----AKGIDKEERRKRALSAIDL-IGLDGFESAH 141
+ V + P+LT+ EN + A GI + R ID GL
Sbjct: 75 QLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGL------- 127
Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDL 187
+S G ++V R ++ L L+DEP ALD L+ + T +
Sbjct: 128 ---LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKI 170
>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se.
Length = 1490
Score = 64.2 bits (156), Expect = 6e-11
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 27/163 (16%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVV 91
VL ++F + G+++ + G +GSGKS+LL +I G + PS G++ G+ IS
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR--------ISFS 492
Query: 92 FQTFALFPWL---TVLENVELGLKAKGIDKEERRKRALSAIDL-IGLDGFESAHTT---- 143
Q W+ T+ +N+ GL E R + A L + F T
Sbjct: 493 PQ----TSWIMPGTIKDNIIFGLSY----DEYRYTSVIKACQLEEDIALFPEKDKTVLGE 544
Query: 144 ---EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENL 183
+SGG R+ ARA L L+D PF+ LDV+T + +
Sbjct: 545 GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEI 587
Score = 50.7 bits (121), Expect = 7e-07
Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 27/220 (12%)
Query: 19 QSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG 78
Q + K VL ++F+V G+ VGLLGR+GSGKSTLL + L+S + G++ G
Sbjct: 1221 QGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDG 1279
Query: 79 ------------KKIKDPPKDISVVFQTFA--LFPWLTVLENVELGLKAKGIDKEERRKR 124
K P+ + + TF L P+ + E+ A+ + + ++
Sbjct: 1280 VSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY-EQWSDEEIWKVAEEVGLKSVIEQ 1338
Query: 125 ALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184
+D + +DG +S G Q + AR+ + +LL+DEP + LD +T + +R
Sbjct: 1339 FPDKLDFVLVDG-----GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIR 1393
Query: 185 TDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSN 224
L + ++++ H + EA+L C + LV +
Sbjct: 1394 KTLKQSFSNC-----TVILSEHRV-EALLECQQFLVIEGS 1427
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake.
Length = 555
Score = 63.8 bits (155), Expect = 9e-11
Identities = 47/206 (22%), Positives = 99/206 (48%), Gaps = 17/206 (8%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD----- 87
L ++ ++ G+IV ++G +G GKSTL ++ GL P G++L G + +D
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL 417
Query: 88 ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISG 147
S +F F LF L + E +D ++ + L D + ++ + TT +S
Sbjct: 418 FSAIFADFHLFDDLIGPDEGE----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALST 473
Query: 148 GMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI-DLWIEGRLPIESMLMVTH 206
G +R+ A++ +LL DE + D +L+ DL +G+ ++++++H
Sbjct: 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGK----TIIIISH 529
Query: 207 NIEEAVLMCDRVLVFSSNPGRIAEEV 232
+ ++ + D+++ ++ G I ++
Sbjct: 530 D-DQYFELADQIIKLAA--GCIVKDT 552
>gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 62.5 bits (152), Expect = 2e-10
Identities = 65/190 (34%), Positives = 99/190 (52%), Gaps = 30/190 (15%)
Query: 22 SLKKIS---GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQV-LFK 77
++K+S G+ ++LD + N+ G +GLLGR+G+GKSTL++++AG ++P SG++ L K
Sbjct: 314 KMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK 373
Query: 78 GKKIKDPPKDISVVFQTFALFPWLTVLENVELGLK--AKGIDKE-ERRKRALSAIDLIGL 134
G K+ FA L L E L+ A+ +E E++ R D +G
Sbjct: 374 GIKLG-----------YFAQHQ-LEFLRADESPLQHLARLAPQELEQKLR-----DYLGG 416
Query: 135 DGFESAHTTEI----SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
GF+ TE SGG R+ A P+LLL+DEP + LD+ + L LID
Sbjct: 417 FGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF 476
Query: 191 WIEGRLPIES 200
EG L + S
Sbjct: 477 --EGALVVVS 484
Score = 44.0 bits (104), Expect = 8e-05
Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 47/190 (24%)
Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81
SL+ G ++LD ++ G+ VGL+G++G GKSTLL ++ +S G F
Sbjct: 6 SLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTF----- 60
Query: 82 KDPPKDISVVF---QTFALFPWLTVLENVELG------LKAKGIDKEER----------- 121
P + + + +T AL LE V G L+A+ D ER
Sbjct: 61 ---PGNWQLAWVNQETPALP--QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHG 115
Query: 122 ----------RKRALSAIDLIGLDGFESAHTTE----ISGGMLQRVGFARAFVVFPSLLL 167
R RA S + GL GF + SGG R+ A+A + LLL
Sbjct: 116 KLDAIDAWTIRSRAASLLH--GL-GFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLL 172
Query: 168 MDEPFSALDV 177
+DEP + LD+
Sbjct: 173 LDEPTNHLDL 182
>gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 62.3 bits (151), Expect = 2e-10
Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 20/209 (9%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KDPPK 86
VL ++F VS E VG++GR+G+GKS++L + +V G+++ + D +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRR 1310
Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRA--LSAIDL--IGLDGFESAHT 142
+S++ Q+ LF TV N++ + D E +RA ID GLD S
Sbjct: 1311 VLSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGG 1369
Query: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTD-LIDLWIEGRLPIESM 201
S G Q + ARA + +L++DE +++DV RTD LI I +M
Sbjct: 1370 ENFSVGQRQLLSLARALLRRSKILVLDEATASVDV------RTDSLIQRTIREEFKSCTM 1423
Query: 202 LMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
L++ H + ++ CD++LV SS G++ E
Sbjct: 1424 LVIAHRL-NTIIDCDKILVLSS--GQVLE 1449
Score = 61.9 bits (150), Expect = 3e-10
Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 29/208 (13%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS-SGQVLFKGKKIKDPPKDISVV 91
L +N + G +V ++G +G GK++L+ + G +S + + V+ +G P +S +
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVP--QVSWI 690
Query: 92 FQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-GLDGFESAHTTEI----- 145
F TV EN+ G + ER RA+ L LD TEI
Sbjct: 691 FNA-------TVRENILFGSDFE----SERYWRAIDVTALQHDLDLLPGRDLTEIGERGV 739
Query: 146 --SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLM 203
SGG QRV ARA + + D+P SALD A + + ++G+ + ++
Sbjct: 740 NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGK----TRVL 795
Query: 204 VTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
VT+ + LM DR+++ S G I EE
Sbjct: 796 VTNQLHFLPLM-DRIILVSE--GMIKEE 820
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 62.3 bits (151), Expect = 3e-10
Identities = 58/242 (23%), Positives = 107/242 (44%), Gaps = 28/242 (11%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----K 82
G V + + + G ++G +G GKSTLLR ++ L++P+ G V G+ I K
Sbjct: 18 GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASK 77
Query: 83 DPPKDISVVFQTFALFPWLTVLENVELG------LKAKGIDKEERRKRALSAIDLIGLDG 136
+ + I ++ Q +TV E V G L + ++E + A+ G+
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRW--RKEDEEAVTKAMQATGITH 135
Query: 137 FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIE-GR 195
+SGG QR A +++L+DEP + LD+ + + DL++L E R
Sbjct: 136 LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDI----SHQIDLLELLSELNR 191
Query: 196 LPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSPEFRQIVEKIY 255
++ V H++ +A ++ G+I + P+ ++ E ++E+IY
Sbjct: 192 EKGYTLAAVLHDLNQACRYASHLIALRE--GKIVAQ-----GAPKEIVTAE---LIERIY 241
Query: 256 AL 257
L
Sbjct: 242 GL 243
>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein.
Length = 1394
Score = 59.4 bits (144), Expect = 2e-09
Identities = 47/168 (27%), Positives = 65/168 (38%), Gaps = 39/168 (23%)
Query: 43 GEIVGLLGRSGSGKSTLLRIIAGLVSPS----SGQVLFKGKKIKDPPKDI------SVVF 92
GE+ +LGR GSG STLL+ IA G + + G P++I VV+
Sbjct: 87 GELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGI----TPEEIKKHYRGDVVY 142
Query: 93 --QTFALFPWLTVLENVEL-------GLKAKGIDKEERRKRALSAIDLI-GLDGFESAHT 142
+T FP LTV E ++ + G+ +EE K GL HT
Sbjct: 143 NAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLS-----HT 197
Query: 143 TE----------ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180
+SGG +RV A A + + D LD TA
Sbjct: 198 RNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATA 245
Score = 47.8 bits (114), Expect = 5e-06
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 14/178 (7%)
Query: 15 QDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSP---SS 71
+++ +KK ++L+ V+ V G + L+G SG+GK+TLL ++A V+ +
Sbjct: 763 RNLTYEVKIKK--EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITG 820
Query: 72 GQVLFKGKKIKDP-PKDISVVFQTFALFPWLTVLENVELGL---KAKGIDKEERRKRALS 127
G L G+ + + I V Q P TV E++ + K + K E+ +
Sbjct: 821 GDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEE 880
Query: 128 AIDLIGLDGFESAHTTEISGGM----LQRVGFARAFVVFPSLLL-MDEPFSALDVLTA 180
I L+ ++ + A G+ +R+ V P LLL +DEP S LD TA
Sbjct: 881 VIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTA 938
>gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 59.0 bits (144), Expect = 3e-09
Identities = 64/251 (25%), Positives = 96/251 (38%), Gaps = 86/251 (34%)
Query: 24 KKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQ-VLFKGKKI- 81
K + +L ++ + G +G+LG +G+GKSTLLRI+AG+ G+ G K+
Sbjct: 14 KVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVG 73
Query: 82 ---KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIG----- 133
++P D P TV ENVE G+ K AL + I
Sbjct: 74 YLPQEPQLD-----------PEKTVRENVEEGVAEV--------KAALDRFNEIYAAYAE 114
Query: 134 ---------------------LDGFESAHTTEI-----------------SGGMLQRVGF 155
D ++ EI SGG +RV
Sbjct: 115 PDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVAL 174
Query: 156 ARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL---PIESMLMVTH------ 206
R + P +LL+DEP + LD AE++ W+E L P +++ VTH
Sbjct: 175 CRLLLEKPDMLLLDEPTNHLD---AESV------AWLEQFLHDYP-GTVVAVTHDRYFLD 224
Query: 207 NIEEAVLMCDR 217
N+ +L DR
Sbjct: 225 NVAGWILELDR 235
Score = 57.1 bits (139), Expect = 1e-08
Identities = 57/178 (32%), Positives = 95/178 (53%), Gaps = 19/178 (10%)
Query: 9 NRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVS 68
++++E +++ +SF G+ L++D ++F++ G IVG++G +G+GKSTL ++I G
Sbjct: 322 DKVIEAENLSKSF------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ 375
Query: 69 PSSGQVLFKGKKIKDPPKDISVVFQTF-ALFPWLTVLENVELGLKAKGIDKEERRKRA-L 126
P SG + KI + K ++ V Q+ AL P TV E + GL + E RA +
Sbjct: 376 PDSGTI-----KIGETVK-LAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYV 429
Query: 127 SAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLR 184
+ G D + +SGG R+ A+ ++LL+DEP + LDV E LR
Sbjct: 430 GRFNFKGGD--QQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDV---ETLR 482
>gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved.
Length = 1522
Score = 58.8 bits (142), Expect = 3e-09
Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 32/209 (15%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVF 92
L+ + F++ G +V ++G+ G GKS+LL + + G V KG P +
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ------ 707
Query: 93 QTFALFPWL---TVLENVELGLKAKGIDKEERRKRALSAIDLIG-LDGFESAHTTEI--- 145
W+ ++ EN+ G E+ ++ L A L+ L+ S TEI
Sbjct: 708 ------AWIQNDSLRENILFGKALN----EKYYQQVLEACALLPDLEILPSGDRTEIGEK 757
Query: 146 ----SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESM 201
SGG QRV ARA + L D+P SA+D +++ +I EG L ++
Sbjct: 758 GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIG--PEGVLKNKTR 815
Query: 202 LMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
++VTH I + D ++V S G+I+E
Sbjct: 816 ILVTHGI-SYLPQVDVIIVMSG--GKISE 841
Score = 47.6 bits (113), Expect = 7e-06
Identities = 56/228 (24%), Positives = 102/228 (44%), Gaps = 32/228 (14%)
Query: 19 QSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG 78
+++ L+ LVL +N + GE VG++GR+G+GKS+L + + + G+++ G
Sbjct: 1288 RNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDG 1347
Query: 79 KKI-----KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIG 133
I D I+++ Q LF ++ + L +E A++L
Sbjct: 1348 LNIAKIGLHDLRFKITIIPQDPVLFS-----GSLRMNLDPFSQYSDE---EVWWALELAH 1399
Query: 134 LDGFESAHTTE-----------ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAEN 182
L F SA + +S G Q V ARA + +L++DE +A+D+ T
Sbjct: 1400 LKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET--- 1456
Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
+LI I + ++L + H + ++ RV+V + G +AE
Sbjct: 1457 --DNLIQSTIRTQFEDCTVLTIAHRL-NTIMDYTRVIVL--DKGEVAE 1499
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 58.7 bits (143), Expect = 3e-09
Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 28/191 (14%)
Query: 43 GEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALFPWLT 102
GE++G++G +G GK+T +++AG++ P G+V + KI P+ I + T
Sbjct: 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYD-------GT 416
Query: 103 V---LENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAF 159
V L ++ L + E + L + + + ++SGG LQRV A
Sbjct: 417 VEDLLRSITDDLGSSYYKSEIIKPLQLERL-------LDK-NVKDLSGGELQRVAIAACL 468
Query: 160 VVFPSLLLMDEPFSALDV---LTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCD 216
L L+DEP + LDV L I E R + L+V H+I + D
Sbjct: 469 SRDADLYLLDEPSAHLDVEQRLAV----AKAIRRIAEERE--ATALVVDHDIYMIDYISD 522
Query: 217 RVLVFSSNPGR 227
R++VF PG+
Sbjct: 523 RLMVFEGEPGK 533
Score = 53.7 bits (130), Expect = 1e-07
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 36/162 (22%)
Query: 40 VSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQ---------VL--FKG-------KKI 81
G++ G+LG +G GK+T ++I++G + P+ G VL F+G KK+
Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155
Query: 82 KDPPKDISVVFQTFALFPWLTVLENVELGLKA-KG-----IDKEERRKRALSAIDLIGLD 135
+ +I VV + + V+L K KG + K + R + ++ +GL+
Sbjct: 156 YN--GEIKVVHKP----------QYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLE 203
Query: 136 GFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
+E+SGG LQRV A A + DEP S LD+
Sbjct: 204 NILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI 245
>gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 58.1 bits (141), Expect = 4e-09
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 20/104 (19%)
Query: 5 AIKDNRLLEIQDIC-----QSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTL 59
A D + LE++++ FS+ I N + GE++ L+G +GSGKSTL
Sbjct: 316 AFPDWQTLELRNVTFAYQDNGFSVGPI----------NLTIKRGELLFLIGGNGSGKSTL 365
Query: 60 LRIIAGLVSPSSGQVLFKGKKIKDPPKD-----ISVVFQTFALF 98
++ GL P SG++L GK + + S VF F LF
Sbjct: 366 AMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLF 409
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 56.5 bits (137), Expect = 1e-08
Identities = 20/58 (34%), Positives = 38/58 (65%)
Query: 22 SLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGK 79
L K+ G V+F++ GE++G++G SGSGK+TLL ++ ++P +G+V ++ +
Sbjct: 11 GLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMR 68
Score = 55.3 bits (134), Expect = 3e-08
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 146 SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI-DLWIEGRLPIESMLMV 204
SGGM QR+ AR V P L+ MDEP LDV L DL+ L E L ++++V
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL-LDLLRGLVRELGL---AVVIV 208
Query: 205 THNIEEAVLMCDRVLVFSSNPGRIAE 230
TH++ A L+ R+LV GR+ E
Sbjct: 209 THDLAVARLLAHRLLVMKQ--GRVVE 232
>gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 55.3 bits (133), Expect = 3e-08
Identities = 50/181 (27%), Positives = 92/181 (50%), Gaps = 18/181 (9%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD 87
G L+ +NF + + ++G +G GKST+L++I+G + PSSG V F+ K++
Sbjct: 520 GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV-FRSAKVR----- 573
Query: 88 ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISG 147
++V Q L+ + + G+ E++ + L + + G + +T +SG
Sbjct: 574 MAVFSQHHVDGLDLSSNPLLYMMRCFPGV-PEQKLRAHLGSFGVTGNLALQPMYT--LSG 630
Query: 148 GMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE-SMLMVTH 206
G RV FA+ P +LL+DEP + LD+ D ++ I+G + + +LMV+H
Sbjct: 631 GQKSRVAFAKITFKKPHILLLDEPSNHLDL--------DAVEALIQGLVLFQGGVLMVSH 682
Query: 207 N 207
+
Sbjct: 683 D 683
Score = 39.8 bits (93), Expect = 0.001
Identities = 65/247 (26%), Positives = 103/247 (41%), Gaps = 66/247 (26%)
Query: 5 AIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLR--- 61
AIKD + ++FS+ + G L++D + ++ G GL+GR+G+GK+T LR
Sbjct: 174 AIKDIHM-------ENFSIS-VGGRDLIVDA-SVTLAFGRHYGLVGRNGTGKTTFLRYMA 224
Query: 62 --IIAGLVSPSSGQVL-FKGKKIKDPPKDISVVFQT-----------FALFPWLTVLENV 107
I G+ P + Q+L + + + D + V T L LE
Sbjct: 225 MHAIDGI--PKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE 282
Query: 108 ELGLKAKGIDKEERRKRALSA--------IDLIGLDGFES-----------------AHT 142
K KG +K+ K A+S ++LI E+ T
Sbjct: 283 TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKAT 342
Query: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRL---PIE 199
SGG R+ ARA + P LLL+DEP + LD+ LW+E L P +
Sbjct: 343 KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAV---------LWLETYLLKWP-K 392
Query: 200 SMLMVTH 206
+ ++V+H
Sbjct: 393 TFIVVSH 399
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 54.1 bits (130), Expect = 6e-08
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Query: 50 GRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKD-ISVVFQTFALFPWLTVLENVE 108
G +G GKS+LLR+IAG++ PSSG + +K I + K + + L +TV EN
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFEN-- 90
Query: 109 LGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLM 168
L ++ + E +AI L +S GM + V AR L L+
Sbjct: 91 LKFWSEIYNSAE---TLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLL 147
Query: 169 DEPFSALD 176
DE + L
Sbjct: 148 DEVETNLS 155
>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 53.9 bits (129), Expect = 7e-08
Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 45/171 (26%)
Query: 42 SGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALFPWL 101
GE++ ++G GSGK+TL R +A + P G V++
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIY------------------------- 35
Query: 102 TVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVV 161
ID E+ + L + LI + G + SG + R+ A A +
Sbjct: 36 --------------IDGEDILEEVLDQLLLIIVGGKK----ASGSGELRLRLALALARKL 77
Query: 162 FPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES--MLMVTHNIEE 210
P +L++DE S LD L + ++ +++ T++ ++
Sbjct: 78 KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
>gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 52.5 bits (126), Expect = 2e-07
Identities = 56/194 (28%), Positives = 82/194 (42%), Gaps = 43/194 (22%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVV 91
+L V+ +V G++ +LG +GSGKSTLL+ + S G+V + + I+ V
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--------RSIAYV 726
Query: 92 FQTFALFPWL---TVLENVELGLKAKGIDKEERRKRALSAI-------DLIGLDGFESAH 141
Q W+ TV N+ D EE R A+ DL L G
Sbjct: 727 PQQ----AWIMNATVRGNILF------FD-EEDAARLADAVRVSQLEADLAQLGG---GL 772
Query: 142 TTEI-------SGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194
TEI SGG RV ARA + L+D+P SALD E + + G
Sbjct: 773 ETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEEC----FLG 828
Query: 195 RLPIESMLMVTHNI 208
L ++ ++ TH +
Sbjct: 829 ALAGKTRVLATHQV 842
Score = 50.9 bits (122), Expect = 6e-07
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 25/163 (15%)
Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KDPP 85
LVL V+F ++ E VG++GR+GSGKSTLL +V G++ G++I ++
Sbjct: 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383
Query: 86 KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEI 145
+ S++ Q LF TV +NV+ L+A + +A++L+GL ++ + I
Sbjct: 1384 RQFSMIPQDPVLFDG-TVRQNVDPFLEASSAE-------VWAALELVGLRERVASESEGI 1435
Query: 146 -----------SGGMLQRVGFARAFVVFPS-LLLMDEPFSALD 176
S G Q + ARA + S +LMDE + +D
Sbjct: 1436 DSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANID 1478
>gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 49.6 bits (118), Expect = 2e-06
Identities = 46/170 (27%), Positives = 87/170 (51%), Gaps = 20/170 (11%)
Query: 70 SSGQVLFKGKKI-----KDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKR 124
+SG++L G I KD S+V Q LF +++ EN++ G K ++ +R
Sbjct: 1275 NSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFG-KEDATREDVKRAC 1332
Query: 125 ALSAIDLIGLDGFESAHTTEI-------SGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
+AID ++ + + T + SGG QR+ ARA + P +LL+DE S+LD
Sbjct: 1333 KFAAIDEF-IESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDS 1391
Query: 178 LTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGR 227
+ + + ++D+ + ++++ + H I ++ D+++VF +NP R
Sbjct: 1392 NSEKLIEKTIVDIKDKAD---KTIITIAHRI-ASIKRSDKIVVF-NNPDR 1436
Score = 38.1 bits (88), Expect = 0.005
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVL 75
+NF ++ G+ +G SG GKST+L++I L P+ G ++
Sbjct: 404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDII 443
Score = 36.5 bits (84), Expect = 0.013
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176
++ +++SGG QR+ ARA + P +L++DE S+LD
Sbjct: 575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611
Score = 27.7 bits (61), Expect = 6.8
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 2 ANIAIKDN---RLLEIQDICQSFSLKKIS------GNLLVLDKVNFNVSSGEIVGLLGRS 52
+NI ++DN R+ DI + ++ N+ + + F+ S + ++G +
Sbjct: 1144 SNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGET 1203
Query: 53 GSGKSTLLRII 63
GSGKST++ ++
Sbjct: 1204 GSGKSTVMSLL 1214
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 48.9 bits (117), Expect = 2e-06
Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 20/160 (12%)
Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISV 90
LVL +N +V S V L+G +GSGKSTL ++ G + G++ G+ + SV
Sbjct: 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSH--SV 412
Query: 91 VFQTFALF---PWL---TVLENVELGLKAKGIDKEERRKRALSAIDLIGL-----DGFES 139
+ Q A+ P + T L NV LG + I EE+ +AL + L L DG +
Sbjct: 413 LRQGVAMVQQDPVVLADTFLANVTLG---RDIS-EEQVWQALETVQLAELARSLPDGLYT 468
Query: 140 ---AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALD 176
+S G Q + AR V P +L++DE + +D
Sbjct: 469 PLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANID 508
>gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei.
Length = 659
Score = 47.8 bits (114), Expect = 5e-06
Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 36/170 (21%)
Query: 27 SGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPK 86
+G++L+ + ++F V SG + + G +G GKS+L RI+ L ++ G+ K
Sbjct: 463 NGDVLI-ESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP------VYGGRLTKPAKG 515
Query: 87 DISVVFQTFALFPWLTVLENVELG-LKAKGI---DKEERRKRALSAIDLIG-LD------ 135
+ V Q P++T LG L+ + I E+ ++R LS DL LD
Sbjct: 516 KLFYVPQR----PYMT------LGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTH 565
Query: 136 ------GFESAH--TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
G+ + +SGG QR+ AR F P ++DE SA+ V
Sbjct: 566 ILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSV 615
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 46.3 bits (110), Expect = 2e-05
Identities = 68/263 (25%), Positives = 116/263 (44%), Gaps = 49/263 (18%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
LL+I+++ F K G + +D+V+ ++ GEI GL+G SGSGKS + + I G V+
Sbjct: 3 LLDIRNLTIEF--KTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICG-VTKD 59
Query: 71 SGQVLFKGKKIKD-------PPK-------DISVVFQTFALFPW--LTVLENVELGL--- 111
+ +V + D P + ++S++FQ P L E V L
Sbjct: 60 NWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE----PQSCLDPSERVGRQLMQN 115
Query: 112 ------KAKGIDKEERRKRALSAIDLIGLDGFE------SAHTTEISGGMLQRVGFARAF 159
K + + RKR AI+L+ G + + E++ G Q+V A A
Sbjct: 116 IPGWTYKGRWWQRFGWRKR--RAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIAL 173
Query: 160 VVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVL 219
P LL+ DEP +A++ T + L L I L+++H+++ D++
Sbjct: 174 ANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTI---LLISHDLQMLSQWADKIN 230
Query: 220 VFSSNPGRIAE----EVLISIPH 238
V G+ E + L++ PH
Sbjct: 231 VLYC--GQTVETAPSKELVTTPH 251
>gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 45.3 bits (108), Expect = 3e-05
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
LE++++ + F N + +N + +GE + ++G +G GK+TLLR + G + P S
Sbjct: 320 LEVENLTKGF------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDS 373
Query: 72 GQV 74
G V
Sbjct: 374 GTV 376
Score = 42.6 bits (101), Expect = 2e-04
Identities = 52/167 (31%), Positives = 75/167 (44%), Gaps = 41/167 (24%)
Query: 47 GLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQ-TFALFPWLTVLE 105
GL+G +G GKST ++I+ G + PS+G V DP + + + Q FA F TVL+
Sbjct: 31 GLIGANGCGKSTFMKILGGDLEPSAGNV------SLDPNERLGKLRQDQFA-FEEFTVLD 83
Query: 106 NVELGLKAKGIDKEER-RKRALS---------AIDLIG----LDGF-------------- 137
V +G K+ER R AL DL +DG+
Sbjct: 84 TVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVG 143
Query: 138 --ESAHT---TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179
E H +E++ G RV A+A P +LL+DEP + LD+ T
Sbjct: 144 IPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINT 190
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 45.0 bits (107), Expect = 4e-05
Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 33/202 (16%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAG--LVSPSSGQVLF-----KGKKIKDP 84
+L +++ V+ GE ++G +G+GKSTLL +I G S+ LF G+ I D
Sbjct: 275 ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDI 334
Query: 85 PKDISVVFQTFAL-FPWLTVLENVEL-------GLKAKGIDKEERRKRALSAIDLIGLDG 136
K I V + L + T + NV L G+ D++ +K A +D++G+D
Sbjct: 335 KKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQ--QKLAQQWLDILGIDK 392
Query: 137 ------FESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
F S +S G + RA V P+LL++DEP LD L + +R +D+
Sbjct: 393 RTADAPFHS-----LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRR-FVDV 446
Query: 191 WI-EGRLPIESMLMVTHNIEEA 211
I EG +L V+H+ E+A
Sbjct: 447 LISEGE---TQLLFVSHHAEDA 465
Score = 36.5 bits (85), Expect = 0.015
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 17/176 (9%)
Query: 29 NLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI-----KD 83
L L + +++G+ +G +GSGKS L R +AG + SG+ + I +
Sbjct: 17 KTLQLP--SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQ 74
Query: 84 PPKDISVVFQ---TFALFPWLTVLENVELGLKAKGIDKEERRKRALSA--IDLIGLDGFE 138
K +S +Q T L P + G I ++E + A G+
Sbjct: 75 LQKLVSDEWQRNNTDMLSP-----GEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALL 129
Query: 139 SAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194
+S G ++ +A + P LL++DEPF LDV + + L L L G
Sbjct: 130 DRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSG 185
>gnl|CDD|185099 PRK15177, PRK15177, Vi polysaccharide export ATP-binding protein
VexC; Provisional.
Length = 213
Score = 44.3 bits (104), Expect = 6e-05
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISV 90
+VLDK +F + E +G+L GSGK+TL R++ GL +P G F G + P +
Sbjct: 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGD--FIGLRGDALPLGAN- 57
Query: 91 VFQTFALFPWLTVLENVELGLKAKGIDKEE 120
+F L P LT EN + G+D +E
Sbjct: 58 ---SFIL-PGLTGEENARMMASLYGLDGDE 83
>gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 42.5 bits (100), Expect = 2e-04
Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 28/158 (17%)
Query: 43 GEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALF---- 98
G + L+G SG+GK+TL+ ++AG +G + +I PK +TFA
Sbjct: 906 GVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIRISGFPK----KQETFARISGYC 958
Query: 99 -------PWLTVLENVE----LGLKAKGIDKEERRKRALSAIDLIGLDGFESA-----HT 142
P +TV E++ L L K + KEE+ ++L+ LD + A
Sbjct: 959 EQNDIHSPQVTVRESLIYSAFLRL-PKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGV 1017
Query: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180
T +S +R+ A V PS++ MDEP S LD A
Sbjct: 1018 TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1055
Score = 36.4 bits (84), Expect = 0.016
Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 44/176 (25%)
Query: 48 LLGRSGSGKSTLLRIIAGLVSPS---SGQVLFKGKKIKD--PPKDISVVFQTFALFPWLT 102
LLG SGK+TLL +AG + PS SG++ + G ++ + P K + + Q +T
Sbjct: 196 LLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255
Query: 103 VLENVELGLKAKGIDKE--------ERRKRA----LSAIDL----IGLDGFESAHTTE-- 144
V E ++ + +G+ R K A + +DL ++G +S+ T+
Sbjct: 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYT 315
Query: 145 ---------------------ISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179
ISGG +RV V L MDE + LD T
Sbjct: 316 LKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 371
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 39.8 bits (93), Expect = 0.002
Identities = 59/223 (26%), Positives = 92/223 (41%), Gaps = 47/223 (21%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VS 68
+L I+D+ S K I L +N V GE+ ++G +GSGKSTL +AG
Sbjct: 1 MLSIKDLHVSVEDKAI------LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE 54
Query: 69 PSSGQVLFKGKKIKD-PPKD-----ISVVFQTFALFPWLTVLENVELGLKAKGIDKEERR 122
+ G V FKGK + + P+D I + FQ P ++ ++ L A R
Sbjct: 55 VTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAV------RS 108
Query: 123 KRALSAIDLIGLDGF--ESAHTTEISGGMLQR---VGFA----------RAFVVFPSLLL 167
R +D E ++ +L R VGF+ + V+ P L +
Sbjct: 109 YRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCI 168
Query: 168 MDEPFSALDVLTAENLRTDLIDLWIEG----RLPIESMLMVTH 206
+DE S LD+ D + + +G R S ++VTH
Sbjct: 169 LDESDSGLDI--------DALKIVADGVNSLRDGKRSFIIVTH 203
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 32.3 bits (74), Expect = 0.23
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 45 IVGLLGRSGSGKSTLLRIIAGLVSP 69
++G+ G SG GK+T LR +A L+
Sbjct: 10 LLGVAGDSGCGKTTFLRGLADLLGE 34
>gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 31.4 bits (72), Expect = 0.51
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 40 VSSGEIVGLLGRSGSGKSTL 59
+S G+ V LLG SG GKSTL
Sbjct: 192 LSGGKTVALLGSSGVGKSTL 211
>gnl|CDD|149727 pfam08757, CotH, CotH protein. Members of this family include the
spore coat protein H (cotH).
Length = 298
Score = 30.7 bits (70), Expect = 0.74
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 374 NLIRRVLDERRLHSAPAARFRNELEDYMSEEYAQETID 411
L RR+LD+ + ARF L +EE ID
Sbjct: 217 PLFRRLLDDPAFRARYKARFEELLNGVFTEERLLAKID 254
>gnl|CDD|132282 TIGR03238, dnd_assoc_3, dnd system-associated protein 3. cereus
E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas
haloplanktis TAC12, and Escherichia coli B7A.
Length = 504
Score = 30.3 bits (68), Expect = 0.95
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLR 61
+L K N + S ++ L G SG GKS +L
Sbjct: 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA 50
>gnl|CDD|163043 TIGR02858, spore_III_AA, stage III sporulation protein AA. Members
of this protein are the stage III sporulation protein
AA, encoded by one of several genes in the spoIIIA
locus. It seems that this protein is found in a species
if and only if that species is capable of endospore
formation.
Length = 270
Score = 30.4 bits (69), Expect = 1.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 48 LLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKI 81
++ GK+TLLR +A ++S Q+ +GKK+
Sbjct: 116 IISPPQCGKTTLLRDLARILSTGISQLGLRGKKV 149
>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated.
Length = 438
Score = 30.1 bits (68), Expect = 1.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 38 FNVSSGEIVGLLGRSGSGKSTLLRIIA 64
V G+ VG+ SG GKSTL+ +IA
Sbjct: 153 LTVGKGQRVGIFAGSGVGKSTLMGMIA 179
>gnl|CDD|180023 PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid;
Reviewed.
Length = 436
Score = 30.1 bits (69), Expect = 1.2
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 29/77 (37%)
Query: 75 LFKGKKIKDPPKD---------ISVV----FQ----TFALFPWLTVLENVELGLKAKGID 117
L GK+ PP I+ FQ F LFP LG + +G D
Sbjct: 362 LALGKEPVIPPPTTALGALLNYITGANPKHFQPMNANFGLFP--------PLGKRIRGED 413
Query: 118 KEERRK----RALSAID 130
K+ER++ RAL+ +
Sbjct: 414 KKERKEAYAERALADLK 430
>gnl|CDD|129256 TIGR00152, TIGR00152, dephospho-CoA kinase. This model produces
scores in the range of 0-25 bits against adenylate,
guanylate, uridine, and thymidylate kinases.
Length = 188
Score = 30.0 bits (68), Expect = 1.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 45 IVGLLGRSGSGKSTLLRIIA 64
I+GL G GSGKST+ +A
Sbjct: 1 IIGLTGGIGSGKSTVANYLA 20
>gnl|CDD|177899 PLN02257, PLN02257, phosphoribosylamine--glycine ligase.
Length = 434
Score = 29.7 bits (67), Expect = 1.4
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 109 LGLKAKGIDKEERRKRALSAIDLIGL-DGF 137
LG+ AKG D E R RA A+D I GF
Sbjct: 386 LGVTAKGKDIAEARARAYDAVDQIDWPGGF 415
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 29.5 bits (66), Expect = 1.6
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 9/62 (14%)
Query: 152 RVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP----IESMLMVTHN 207
RV A+ SLL+MDEP + LD E+ RT+L D+ IE L I ++M++H+
Sbjct: 815 RVAVAQFLNNDKSLLIMDEPTAFLD----EDRRTNLKDI-IEYSLKDSSDIPQVIMISHH 869
Query: 208 IE 209
E
Sbjct: 870 RE 871
>gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 29.0 bits (65), Expect = 2.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 33 LDKVNFNVSSGEIVGLLGRSGSGKSTL 59
L ++ EIV L G SGSGKS+L
Sbjct: 16 LKNISIEFCPREIVLLTGVSGSGKSSL 42
>gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional.
Length = 201
Score = 29.1 bits (66), Expect = 2.4
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 44 EIVGLLGRSGSGKSTLLRIIAG 65
EIV +GRS GKSTL+R + G
Sbjct: 11 EIV-FVGRSNVGKSTLVRELTG 31
>gnl|CDD|163405 TIGR03693, ocin_ThiF_like, putative thiazole-containing bacteriocin
maturation protein. Members of this protein family are
found in a three-gene operon in Bacillus anthracis and
related Bacillus species, where the other two genes are
clearly identified with maturation of a putative
thiazole-containing bacteriocin precursor. While there
is no detectable pairwise sequence similarity between
members of this family and the proposed
cyclodehydratases such as SagC of Streptococcus pyogenes
(see family TIGR03603), both families show similarity
through PSI-BLAST to ThiF, a protein involved in
biosynthesis of the thiazole moiety for thiamine
biosynthesis. This family, therefore, may contribute to
cyclodehydratase function in heterocycle-containing
bacteriocin biosyntheses. In Bacillus licheniformis ATCC
14580, the bacteriocin precursor gene is adjacent to the
gene for this protein.
Length = 637
Score = 28.8 bits (64), Expect = 3.2
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 273 PGSGIGIFLRHVSTNL------LSGLIEAVMAPPYNGKADLPDLANSLQLE-ADRLFHIG 325
P G + R+ + + ++ E ++ P +NG+ L D+ + L R+F IG
Sbjct: 20 PDPNGGAYFRNNAGSFRLDGDGIANWFEKLL-PMFNGEHSLADITDGLPAPYQKRVFEIG 78
Query: 326 ESL 328
E L
Sbjct: 79 EIL 81
>gnl|CDD|183704 PRK12726, PRK12726, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 407
Score = 28.5 bits (63), Expect = 3.3
Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Query: 26 ISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60
+SG L V D +F++S+ I+ L+G++G GK+T L
Sbjct: 191 LSGKLAVED--SFDLSNHRIISLIGQTGVGKTTTL 223
>gnl|CDD|162115 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase,
VirB4 family. Type IV secretion systems are found in
Gram-negative pathogens. They export proteins, DNA, or
complexes in different systems and are related to
plasmid conjugation systems. This model represents
related ATPases that include VirB4 in Agrobacterium
tumefaciens (DNA export) CagE in Helicobacter pylori
(protein export) and plasmid TraB (conjugation).
Length = 785
Score = 28.4 bits (64), Expect = 3.6
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 37 NFNVSSGEIVG---LLGRSGSGKSTLLRIIA 64
NF+V +++G + G +GSGK+TLL +
Sbjct: 425 NFHVRDAKVLGHTLIFGPTGSGKTTLLNFLL 455
>gnl|CDD|163595 TIGR03883, DUF2342_F420, uncharacterized protein, coenzyme F420
biosynthesis associated. protein whose crystal
structure has been determined (PDB:3CMN_A). This has
been annotated as a putative hydrolase, but the support
for that assertion is untraceable. There is no cofactor
present in the structure.
Length = 346
Score = 28.5 bits (64), Expect = 3.7
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 370 VPLVNLIRRVLDERRLHSAPAARF 393
VP V IR D+RR P R
Sbjct: 263 VPSVADIRARFDQRRRGRGPLDRL 286
>gnl|CDD|132536 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 413
Score = 28.4 bits (64), Expect = 3.9
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 43 GEIVGLLGRSGSGKSTLLRIIA 64
G+ VG+ SG GKSTLL +IA
Sbjct: 137 GQRVGIFAGSGVGKSTLLGMIA 158
>gnl|CDD|183417 PRK12299, obgE, GTPase CgtA; Reviewed.
Length = 335
Score = 28.1 bits (64), Expect = 4.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 46 VGLLGRSGSGKSTLLRII 63
VGL+G +GKSTL+ +
Sbjct: 161 VGLVGLPNAGKSTLISAV 178
>gnl|CDD|162162 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of
ATPases demonstrates extensive homology with ATP
synthase F1, beta subunit. It is a mixture of members
with two different protein functions. The first group is
exemplified by Salmonella typhimurium FliI protein. It
is needed for flagellar assembly, its ATPase activity is
required for flagellation, and it may be involved in a
specialized protein export pathway that proceeds without
signal peptide cleavage. The second group of proteins
function in the export of virulence proteins;
exemplified by Yersinia sp. YscN protein an ATPase
involved in the type III secretory pathway for the
antihost Yops proteins.
Length = 440
Score = 28.1 bits (63), Expect = 4.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 38 FNVSSGEIVGLLGRSGSGKSTLLRIIA 64
V G+ +G+ SG GKSTLL +IA
Sbjct: 158 LTVGKGQRIGIFAGSGVGKSTLLGMIA 184
>gnl|CDD|183416 PRK12298, obgE, GTPase CgtA; Reviewed.
Length = 390
Score = 27.9 bits (63), Expect = 4.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 46 VGLLGRSGSGKSTLLRII 63
VGLLG +GKST +R +
Sbjct: 162 VGLLGLPNAGKSTFIRAV 179
>gnl|CDD|161782 TIGR00235, udk, uridine kinase. Model contains a number of
longer eukaryotic proteins and starts bringing in
phosphoribulokinase hits at scores of 160 and below.
Length = 207
Score = 28.1 bits (63), Expect = 5.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 42 SGEIVGLLGRSGSGKSTLLRIIAGLVS 68
G I+G+ G SGSGK+T+ R I +
Sbjct: 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31
>gnl|CDD|173193 PRK14731, coaE, dephospho-CoA kinase; Provisional.
Length = 208
Score = 28.1 bits (63), Expect = 5.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 45 IVGLLGRSGSGKSTLLRIIAGL 66
+VG+ G GSGKST+ R +A +
Sbjct: 7 LVGVTGGIGSGKSTVCRFLAEM 28
>gnl|CDD|162989 TIGR02729, Obg_CgtA, Obg family GTPase CgtA. This model describes
a univeral, mostly one-gene-per-genome GTP-binding
protein that associates with ribosomal subunits and
appears to play a role in ribosomal RNA maturation. This
GTPase, related to the nucleolar protein Obg, is
designated CgtA in bacteria. Mutations in this gene are
pleiotropic, but it appears that effects on cellular
functions such as chromosome partition may be secondary
to the effect on ribosome structure. Recent work done in
Vibrio cholerae shows an essential role in the stringent
response, in which RelA-dependent ability to synthesize
the alarmone ppGpp is required for deletion of this
GTPase to be lethal.
Length = 329
Score = 27.8 bits (63), Expect = 5.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 46 VGLLGRSGSGKSTLLRII 63
VGL+G +GKSTL+ +
Sbjct: 160 VGLVGLPNAGKSTLISAV 177
>gnl|CDD|162913 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase.
Length = 422
Score = 27.7 bits (62), Expect = 5.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 43 GEIVGLLGRSGSGKSTLLRIIA 64
G+ +G+ +G GKSTLL +IA
Sbjct: 145 GQRIGIFAGAGVGKSTLLGMIA 166
>gnl|CDD|178848 PRK00081, coaE, dephospho-CoA kinase; Reviewed.
Length = 197
Score = 27.8 bits (63), Expect = 6.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 45 IVGLLGRSGSGKSTLLRIIAGL 66
I+GL G GSGKST+ + A L
Sbjct: 4 IIGLTGGIGSGKSTVANLFAEL 25
>gnl|CDD|161778 TIGR00231, small_GTP, small GTP-binding protein domain. This
model recognizes a large number of small GTP-binding
proteins and related domains in larger proteins. Note
that the alpha chains of heterotrimeric G proteins are
larger proteins in which the NKXD motif is separated
from the GxxxxGK[ST] motif (P-loop) by a long insert
and are not easily detected by this model.
Length = 161
Score = 27.7 bits (62), Expect = 6.3
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 11/48 (22%)
Query: 46 VGLLGRSGSGKSTLLRIIAGLVSPSS-----------GQVLFKGKKIK 82
+ ++G GKSTLL + G + + GK K
Sbjct: 4 IVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYK 51
>gnl|CDD|180615 PRK06547, PRK06547, hypothetical protein; Provisional.
Length = 172
Score = 27.8 bits (62), Expect = 6.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 50 GRSGSGKSTLLRIIAG 65
GRSGSGK+TL +A
Sbjct: 22 GRSGSGKTTLAGALAA 37
>gnl|CDD|180064 PRK05416, PRK05416, glmZ(sRNA)-inactivating NTPase; Provisional.
Length = 288
Score = 27.4 bits (62), Expect = 7.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 50 GRSGSGKSTLLR 61
G SG+GKS LR
Sbjct: 13 GLSGAGKSVALR 24
>gnl|CDD|179754 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 27.5 bits (62), Expect = 7.4
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 15/54 (27%)
Query: 226 GRIAEEVLISIPHPRNRLSPE-FRQIVEKIYALMT------KKEEKRLNPLENA 272
+ EEV N LS E R+ +E++ + K+E+K L PL NA
Sbjct: 52 KEVVEEV--------NSLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNA 97
>gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 27.3 bits (62), Expect = 8.1
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 382 ERRLHSAPAARFRNELEDYMSE 403
ERR + R ELE YMSE
Sbjct: 385 ERRYRETESEYVREELEKYMSE 406
>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated.
Length = 432
Score = 27.2 bits (60), Expect = 8.3
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
Query: 13 EIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA 64
EI D+ ++ +K I L + G+ +G+ SG GKSTLL +IA
Sbjct: 135 EITDVFET-GIKSIDSML--------TIGIGQKIGIFAGSGVGKSTLLGMIA 177
>gnl|CDD|179560 PRK03333, coaE, dephospho-CoA kinase/protein folding accessory
domain-containing protein; Provisional.
Length = 395
Score = 27.3 bits (61), Expect = 9.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 46 VGLLGRSGSGKSTLLRIIAGL 66
+GL G G+GKST+ +A L
Sbjct: 4 IGLTGGIGAGKSTVAARLAEL 24
>gnl|CDD|179779 PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional.
Length = 460
Score = 27.1 bits (61), Expect = 9.1
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 22 SLKKISGNLLVLDKVNFNVSSGEIV 46
++ +I G LL ++ V V+ GEIV
Sbjct: 6 TVSEIKGPLLFVEGVE-GVAYGEIV 29
>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol
utilisation. Members of this family function in
ethanolamine and propanediol degradation pathways,
however the exact roles of these proteins is poorly
understood.
Length = 143
Score = 27.2 bits (61), Expect = 9.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 48 LLGRSGSGKSTLLRIIAGL 66
L+GRSG GK+TL + + G
Sbjct: 6 LIGRSGCGKTTLTQALNGE 24
>gnl|CDD|178861 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 27.1 bits (61), Expect = 9.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 48 LLGRSGSGKSTLLRIIAG 65
L G+SG GKSTLL +A
Sbjct: 169 LAGQSGVGKSTLLNALAP 186
>gnl|CDD|172357 PRK13830, PRK13830, conjugal transfer protein TrbE; Provisional.
Length = 818
Score = 27.1 bits (60), Expect = 9.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 48 LLGRSGSGKSTLLRIIA 64
+ G +GSGKSTLL +IA
Sbjct: 461 IFGPTGSGKSTLLALIA 477
>gnl|CDD|150244 pfam09502, HrpB4, Bacterial type III secretion protein (HrpB4).
This entry represents proteins encoded by genes which
are found in type III secretion operons in a narrow
range of species including Xanthomonas, Burkholderia and
Ralstonia.
Length = 215
Score = 27.1 bits (60), Expect = 9.9
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 148 GMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLI 188
G L RV A + PSL +DEP + L VL A +L L
Sbjct: 51 GALSRVIQAWSGGPSPSLGALDEPANRLAVLPAADLLRVLR 91
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.138 0.387
Gapped
Lambda K H
0.267 0.0703 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,382,168
Number of extensions: 503258
Number of successful extensions: 1975
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1617
Number of HSP's successfully gapped: 332
Length of query: 438
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 342
Effective length of database: 3,920,105
Effective search space: 1340675910
Effective search space used: 1340675910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)