BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] (438 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 885 bits (2286), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/438 (100%), Positives = 438/438 (100%) Query: 1 MANIAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60 MANIAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL Sbjct: 1 MANIAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60 Query: 61 RIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEE 120 RIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEE Sbjct: 61 RIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEE 120 Query: 121 RRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180 RRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA Sbjct: 121 RRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180 Query: 181 ENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPR 240 ENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPR Sbjct: 181 ENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPR 240 Query: 241 NRLSPEFRQIVEKIYALMTKKEEKRLNPLENAPGSGIGIFLRHVSTNLLSGLIEAVMAPP 300 NRLSPEFRQIVEKIYALMTKKEEKRLNPLENAPGSGIGIFLRHVSTNLLSGLIEAVMAPP Sbjct: 241 NRLSPEFRQIVEKIYALMTKKEEKRLNPLENAPGSGIGIFLRHVSTNLLSGLIEAVMAPP 300 Query: 301 YNGKADLPDLANSLQLEADRLFHIGESLQLLQLVNLSGGDITLTESGIRFANLDTDSRKK 360 YNGKADLPDLANSLQLEADRLFHIGESLQLLQLVNLSGGDITLTESGIRFANLDTDSRKK Sbjct: 301 YNGKADLPDLANSLQLEADRLFHIGESLQLLQLVNLSGGDITLTESGIRFANLDTDSRKK 360 Query: 361 LFAKQLLQHVPLVNLIRRVLDERRLHSAPAARFRNELEDYMSEEYAQETIDTVVSWGRYA 420 LFAKQLLQHVPLVNLIRRVLDERRLHSAPAARFRNELEDYMSEEYAQETIDTVVSWGRYA Sbjct: 361 LFAKQLLQHVPLVNLIRRVLDERRLHSAPAARFRNELEDYMSEEYAQETIDTVVSWGRYA 420 Query: 421 ELFSYDEQSELFSFDNPQ 438 ELFSYDEQSELFSFDNPQ Sbjct: 421 ELFSYDEQSELFSFDNPQ 438 >gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 348 Score = 137 bits (345), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 94/243 (38%), Positives = 129/243 (53%), Gaps = 26/243 (10%) Query: 35 KVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP--------- 85 K N V GEI+ L+G SG+GKSTLLR I GL G+VL K P Sbjct: 47 KANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLR 106 Query: 86 ----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAH 141 +S+VFQ FAL PW TV NVELGL+ I ER+ R ++++ L + Sbjct: 107 KLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCK 166 Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESM 201 +SGGM QRVGFARAF +LLMDEPFS+LD L L+ +L+ L R +++ Sbjct: 167 INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ---RKLKKTI 223 Query: 202 LMVTHNIEEAVLMCDRVLVFSSNPGRI-----AEEVLISIPHPRNRLSPEFRQIVEKIYA 256 + V+H+I EA + +R+ + GRI +E+++ HP N EF Q + I A Sbjct: 224 VFVSHDINEAFRLGNRIAIMEG--GRIIQCGTPQEIIL---HPANCYVSEFIQKLNPITA 278 Query: 257 LMT 259 L+ Sbjct: 279 LVA 281 >gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 262 Score = 99.4 bits (246), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 108/214 (50%), Gaps = 10/214 (4%) Query: 17 ICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF 76 + + SL K ++ V+ V+ V GEIVGLLG +G+GK+T ++ GL+ SG + Sbjct: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84 Query: 77 KGKKIKDPPK------DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAID 130 G I P IS + Q ++F LTV EN+ L+ DK++R ++ S + Sbjct: 85 DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144 Query: 131 LIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190 + + +SGG +R+ AR+ V FPS +L+DEPF+ +D + ++ + DL Sbjct: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204 Query: 191 WIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSN 224 G +L+ HN+ E + + DR + + Sbjct: 205 ASRG----IGILITDHNVHEILTLIDRAYIIHAG 234 >gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 99.0 bits (245), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 115/217 (52%), Gaps = 14/217 (6%) Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG---- 78 L K GN L +N NV GE V + G SGSGKSTL+R I + +G+++ G Sbjct: 23 LNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLN 82 Query: 79 ---KKIKDPPKDISVVFQTFALFPWLTVLENVELG-LKAKGIDKEERRKRALSAIDLIGL 134 + I + +D+ +VFQ F LF L+VLEN LG + + + K++ + A+ ++ + + Sbjct: 83 DDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKI 142 Query: 135 DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194 ++ +SGG QR AR+ + P ++L DEP SALD + + +I+L EG Sbjct: 143 ADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEG 202 Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 +M+ VTH + A + DRV+ G+I E+ Sbjct: 203 M----TMVCVTHEMGFARQVADRVVFMDQ--GQIVEQ 233 >gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 234 Score = 97.4 bits (241), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 113/218 (51%), Gaps = 18/218 (8%) Query: 35 KVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGK-KIKDPP--KDISVV 91 + +F V+ E + +LG SG+GKSTLL ++AG P+ G + G+ + P + +S++ Sbjct: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSIL 76 Query: 92 FQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQ 151 FQ LF LTV +N+ LG+ + + ++ + L+ F + +++SGG Q Sbjct: 77 FQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQ 136 Query: 152 RVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEA 211 RV AR + +LL+DEPF+ D + L + E +L ++LM++HN+E++ Sbjct: 137 RVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQL---TLLMISHNLEDS 193 Query: 212 VLMCDRV-------LVFSSNPGR-----IAEEVLISIP 237 + + R +V+ +P R I E L+ IP Sbjct: 194 MQIATRFIVIAGGQIVYDGDPDRLMNGLIPESTLLGIP 231 >gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 96.7 bits (239), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 70/190 (36%), Positives = 104/190 (54%), Gaps = 15/190 (7%) Query: 43 GEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQV--------LFKGKKIKDPPKDISVVFQT 94 GEI+G++G SG+GKS L+R I GL+ SG+V L KGK+ + V+FQ Sbjct: 39 GEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQH 98 Query: 95 FALFPWLTVLENVELGLKAK-GIDKEERRKRALSAIDLIGLDGFESAHTT--EISGGMLQ 151 ALF +TV EN+ + +K + + + I ++GL E+A+ ++SGGM++ Sbjct: 99 GALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPP-ETANLMPFQLSGGMIK 157 Query: 152 RVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEA 211 RV ARA + P LL +DEP S LD + AE LI L L S+ M+TH++ Sbjct: 158 RVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGL---SVYMITHDLNNL 214 Query: 212 VLMCDRVLVF 221 + C+RV V Sbjct: 215 ISTCNRVAVI 224 >gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus Liberibacter asiaticus str. psy62] Length = 227 Score = 88.2 bits (217), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 110/216 (50%), Gaps = 15/216 (6%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 +L +Q++ S+ +++ VL+ V+ ++ GEIV L+ SG+GKST+L I L P Sbjct: 6 VLLLQNVKHSY--RQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD 63 Query: 71 SGQVLFKGK---KIKDPPKD------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEER 121 G V+ + K+ D K I V+Q L +V+EN+ GI+ + Sbjct: 64 QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTA 123 Query: 122 RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAE 181 +RA+ + + + + + +++ISGG QRV RA P ++L DEP LD+ TA+ Sbjct: 124 YQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183 Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDR 217 + + L L + L + L+ THN + A M DR Sbjct: 184 QVFSILKYLVVRSGL---AALIATHNHDLASQM-DR 215 >gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 596 Score = 73.9 bits (180), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 103/209 (49%), Gaps = 19/209 (9%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP-----K 86 VL +N SG++ L+G SGSGKST++ ++ + PSSG + G I+D + Sbjct: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427 Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-----GLDGFESAH 141 IS V Q LF TV N+ +G ++ ++ +A D I G D + + Sbjct: 428 RISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGEN 486 Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESM 201 + +SGG QR+ ARA + +L++DE SALD T ENL + ++GR I Sbjct: 487 GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT-ENLVRQALSRLMQGRTTI--- 542 Query: 202 LMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230 ++ H I ++ D ++ G+++E Sbjct: 543 -VIAHRI-STIIEADHIIFI--EDGKVSE 567 >gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 254 Score = 71.6 bits (174), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 26/214 (12%) Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS-----SGQVLFKGKKIKDPPKDI-- 88 +N + + L+G SG GKST LR + + +G+++ GK I D+ Sbjct: 25 INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVR 84 Query: 89 -----SVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAH-- 141 +VFQ FP ++ +NV G + G+ + + + L F Sbjct: 85 LRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDR 143 Query: 142 ----TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197 + +SGG QRV ARA V P ++LMDEP SALD + ++ +L E R Sbjct: 144 LFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVE----ELIHELRES 199 Query: 198 IESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231 + ++++VTH++++A + R +F + G + EE Sbjct: 200 L-TIVIVTHSMQQAARVSQRAAMF--HMGHLVEE 230 >gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] Length = 240 Score = 69.3 bits (168), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 24/197 (12%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVV 91 +L +NF + EIV L+G +GSGKST+ ++I G++ P+ G V K P+ I Sbjct: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------KRHPQLI--- 74 Query: 92 FQTFALFPWLTVLEN-VELGL-KAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGM 149 P +EN + L L + + R L +D + L G + + ++SGG Sbjct: 75 ---VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGE 131 Query: 150 LQRVGFARAFVVFPSLLLMDEPFSALDV---LTAENLRTDLIDLWIEGRLPIESMLMVTH 206 QR A+A + P+LL++DEP +D L+ L T + G +L+++H Sbjct: 132 FQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG------ILLISH 185 Query: 207 NIEEAVLMCDRVLVFSS 223 N+ + D V+ ++ Sbjct: 186 NLHMVMASTDTVICLNN 202 >gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron) [Candidatus Liberibacter asiaticus str. psy62] Length = 280 Score = 67.8 bits (164), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 19/217 (8%) Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71 LE++DI ++ L+ VN + I L+G +G+GKSTL + I GL+ Sbjct: 12 LELKDISVTYP-----NGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDK 66 Query: 72 GQVLFKGKKIKDPPKD--ISVVFQTFAL---FPWLTVLENVELG----LKAKGIDKEERR 122 G + + +++ K I+ + QT ++ FP L V + V +G + + + Sbjct: 67 GSISIFNQTVENALKADLIAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDY 125 Query: 123 KRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAEN 182 + A++ +G+ E+S G +RV ARA +++MDEPF+A+D T Sbjct: 126 RIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTERE 185 Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVL 219 + L L E + +L+ THNI CDR + Sbjct: 186 MIFLLKSLLNEDIM----ILVSTHNINSIPSFCDRTI 218 >gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 597 Score = 60.8 bits (146), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 60/246 (24%), Positives = 115/246 (46%), Gaps = 34/246 (13%) Query: 9 NRLLEIQDICQSFSLKKISGNLL-------------VLDKVNFNVSSGEIVGLLGRSGSG 55 N +EIQ+ S LK +G+++ + ++F ++ + L+G SG G Sbjct: 336 NEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVG 395 Query: 56 KSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKG 115 KST+ +++ L G + G+ IK K+ + QT + P T+L N L Sbjct: 396 KSTVAKLLYRLYDIKGGIITIDGQDIKKITKE--SLRQTIGIIPQDTILFNDTLRYNILY 453 Query: 116 IDKEERRKRALSAIDLIGL--------DGFESA---HTTEISGGMLQRVGFARAFVVFPS 164 + + +A+++ L +G+++ ++SGG QRV ARA + P Sbjct: 454 GNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPP 513 Query: 165 LLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSN 224 +++ DE S+LD++T +++T L L + R + L++ H + + D ++VF + Sbjct: 514 IIIFDEATSSLDIITERHIQTALATL-SKNR----TTLVIAHRL-STITDADNIIVF--D 565 Query: 225 PGRIAE 230 G + E Sbjct: 566 QGTVVE 571 >gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 539 Score = 59.7 bits (143), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 89/171 (52%), Gaps = 16/171 (9%) Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 ++E + I +S++ + L++D ++F + G IVG++G +G+GK+TL R++ G SP Sbjct: 317 VIEAKGISKSYN------DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD 370 Query: 71 SGQVLFKGKKIKDPPKDISVVFQTF-ALFPWLTVLENVELGLKAKGIDKEERRKRA-LSA 128 SG + G+ + +S V Q+ +L TV E++ G ++ E RA SA Sbjct: 371 SGTIHV-GETVC-----LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA 424 Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179 + G D + +SGG RV A+ +++L+DEP + LD T Sbjct: 425 FNFKGGD--QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473 Score = 48.5 bits (114), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 104/243 (42%), Gaps = 62/243 (25%) Query: 17 ICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF 76 I L K+ G+ VLD +N + +G+LG +G+GKST+LRI+AG+ +G+ Sbjct: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL 65 Query: 77 K-----GKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKG----------IDKEER 121 G ++P D+S TV EN+ G+ K ++ E+ Sbjct: 66 ATGFTVGYLPQEPQLDLSK-----------TVKENIIEGVAHKQAILDRYNELMMNYSEK 114 Query: 122 RKRALSAI-DLIGLDGF-----------ESAHT-------TEISGGMLQRVGFARAFVVF 162 + ++ + D+I G ES H T +SGG +RV + + Sbjct: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174 Query: 163 PSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES--MLMVTH------NIEEAVLM 214 P LLL+DEP + LD T W+E L S +LMVTH N+ +L Sbjct: 175 PDLLLLDEPTNHLDAETI---------AWMEKYLREYSGAVLMVTHDRYFLDNVTNWILE 225 Query: 215 CDR 217 DR Sbjct: 226 VDR 228 >gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane subunits [Candidatus Liberibacter asiaticus str. psy62] Length = 528 Score = 55.8 bits (133), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 11/156 (7%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-----DPPK 86 +L VNF V GE + L+G SG+GK+++ +I P SG V +G ++ + + Sbjct: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRR 364 Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGL--DGFESA---H 141 I+ V Q + +V +N+ +G + + A + IG +G+++ Sbjct: 365 FIAWVPQH-PIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDG 423 Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177 +S G +QR+ ARA + +LL+DE SALD+ Sbjct: 424 AVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDI 459 >gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter asiaticus str. psy62] Length = 565 Score = 52.4 bits (124), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/199 (24%), Positives = 99/199 (49%), Gaps = 14/199 (7%) Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKK-----IKDPP 85 L+ ++F + G + G SG GKS L + GL++ G + F ++ I+ Sbjct: 346 LICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFS 405 Query: 86 KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAI-DLIGL-DGFESAHTT 143 I + Q +LFP +++ EN+ L + ++ + + D++ L +G+++ + + Sbjct: 406 AQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCS 464 Query: 144 -EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESML 202 EI ++Q++ +R P++LLMDEP LD N T L+ + E + ++++ Sbjct: 465 DEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT-LLKQFKENK---KTIV 520 Query: 203 MVTHNIEEAVLMCDRVLVF 221 +++H+ + M D L+F Sbjct: 521 IISHD-PTIISMSDFSLIF 538 >gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 610 Score = 52.0 bits (123), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 22/168 (13%) Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFK-----GKKIK 82 G + +L V ++ E + L+G +GSGKSTLL+I AG+ P SG V G + Sbjct: 16 GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQ 75 Query: 83 DPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHT 142 +P D+S F T + + T+ + +E + L +L D E+ Sbjct: 76 NP--DLS-HFSTISQYIDDTIKDTIEAPYSPYSL---------LKKFNLREQDRIEN--- 120 Query: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190 +S G + V + + P +L++DEP + LD T + +L+ + Sbjct: 121 --LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI 166 Score = 46.2 bits (108), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 34/188 (18%) Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-------- 82 LV+ + + GE +G++G +G+GK+TLL+++ G + P G + G +K Sbjct: 298 LVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATIDQKR 356 Query: 83 ---DPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFES 139 DP K +L +LT L ++ E R A D + Sbjct: 357 EDIDPDK---------SLASYLTGSSGDSLMVRG------ESRHVAGYIKDFLFHPDQAH 401 Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199 + +SGG R AR + L+MDEP + LD T + L + L +G Sbjct: 402 SLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL--QG----- 454 Query: 200 SMLMVTHN 207 ++L+V+H+ Sbjct: 455 TILIVSHD 462 >gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 249 Score = 51.6 bits (122), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 17/163 (10%) Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPSSGQVLFKGKKIKD------ 83 ++ +N V E+V ++G +GSGKSTL +++G ++G +L+KG+ I D Sbjct: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77 Query: 84 PPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEE---------RRKRALSAIDLIGL 134 K I + FQ P + +++ +++ L + + E R+ R ++A I + Sbjct: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINM 137 Query: 135 DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177 D + SGG + + ++ PSL ++DE S LD+ Sbjct: 138 DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180 >gi|254781017|ref|YP_003065430.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 324 Score = 26.6 bits (57), Expect = 0.86, Method: Compositional matrix adjust. Identities = 12/27 (44%), Positives = 15/27 (55%) Query: 245 PEFRQIVEKIYALMTKKEEKRLNPLEN 271 PE +I +KIYALM K + L N Sbjct: 204 PEINEINQKIYALMGKLSQISCQALRN 230 >gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str. psy62] Length = 311 Score = 25.0 bits (53), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 20/62 (32%) Query: 34 DKVNFNVSSGEIVGLLGRSGSGKSTLLR-------------------IIAGLVSPSSGQV 74 D V N SG V L+G + +GKSTL+ I+ G+VS Q+ Sbjct: 14 DFVQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72 Query: 75 LF 76 +F Sbjct: 73 VF 74 >gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus str. psy62] Length = 440 Score = 25.0 bits (53), Expect = 2.7, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 10/56 (17%) Query: 19 QSFSLKKISGNLLVL-DKVNFNVSSGEI---------VGLLGRSGSGKSTLLRIIA 64 Q+FS K++ ++L L + ++ ++S G++ + +LG S +GKS+L +A Sbjct: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 >gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62] Length = 648 Score = 24.6 bits (52), Expect = 3.7, Method: Compositional matrix adjust. Identities = 11/23 (47%), Positives = 15/23 (65%) Query: 362 FAKQLLQHVPLVNLIRRVLDERR 384 F K LL H+P+ NLI + +D R Sbjct: 7 FIKDLLIHIPISNLIGQYVDWDR 29 >gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 24.3 bits (51), Expect = 3.7, Method: Compositional matrix adjust. Identities = 11/22 (50%), Positives = 15/22 (68%) Query: 43 GEIVGLLGRSGSGKSTLLRIIA 64 G+ +G+ SG GKSTLL + A Sbjct: 161 GQRIGVFAGSGIGKSTLLSMFA 182 >gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62] Length = 647 Score = 24.3 bits (51), Expect = 4.1, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 20/106 (18%) Query: 48 LLGRSGSGKSTLLRIIAG-------LVSPSSGQVLFKG---KKIKDPPKDISVVFQTFAL 97 L+G G+GK+ L R +AG +S S LF G +++D + Q Sbjct: 186 LVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRD------MFEQAKNN 239 Query: 98 FPWLTVLENVELGLKAKGI---DKEERRKRALSAIDLIGLDGFESA 140 P + ++ ++ + +GI + R++ L+ + L+ +DGFES+ Sbjct: 240 SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQL-LVEMDGFESS 284 >gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic murein transglycosylase signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] Length = 288 Score = 24.3 bits (51), Expect = 4.7, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%) Query: 17 ICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGS-----GKSTLLRIIAGLV 67 I Q +LKK + LL+ K + V G ++ L G GK+ LL +A L Sbjct: 104 IAQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLA 159 >gi|254780442|ref|YP_003064855.1| pyruvate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 480 Score = 23.5 bits (49), Expect = 6.4, Method: Compositional matrix adjust. Identities = 9/36 (25%), Positives = 23/36 (63%) Query: 292 LIEAVMAPPYNGKADLPDLANSLQLEADRLFHIGES 327 ++E+++ P+ +A++ D+A ++ EAD + E+ Sbjct: 279 MLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAET 314 >gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter asiaticus str. psy62] Length = 480 Score = 23.5 bits (49), Expect = 6.6, Method: Compositional matrix adjust. Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 7/110 (6%) Query: 196 LPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSPEFR-QIVEKI 254 + E M T E + D V+V S+ + + + ++ R+ + P F+ Q+ E Sbjct: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294 Query: 255 YALMTKKEEKRLNPL----ENAPGSGIGIFLRHVSTNLLSGLIEAVMAPP 300 L+ EK +P+ EN PG I ++ + L G+ E + P Sbjct: 295 RVLIGSFSEK--DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342 >gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str. psy62] Length = 504 Score = 23.5 bits (49), Expect = 7.1, Method: Compositional matrix adjust. Identities = 13/42 (30%), Positives = 22/42 (52%) Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA 64 L +S + LDK + +++ + GR G GK++L IA Sbjct: 199 LAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240 >gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 478 Score = 23.1 bits (48), Expect = 8.5, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 19 QSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTL-LRIIAGLVSPSSGQVLFK 77 QS ++ + V+D ++ G+I GL G +G GK+ L + +I + G +F Sbjct: 126 QSTDASILTTGIKVIDLISPYQKGGKI-GLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184 Query: 78 G 78 G Sbjct: 185 G 185 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.138 0.387 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 273,919 Number of Sequences: 1233 Number of extensions: 11547 Number of successful extensions: 88 Number of sequences better than 100.0: 34 Number of HSP's better than 100.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 39 length of query: 438 length of database: 328,796 effective HSP length: 77 effective length of query: 361 effective length of database: 233,855 effective search space: 84421655 effective search space used: 84421655 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)