BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide
binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62]
(438 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 438
Score = 885 bits (2286), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/438 (100%), Positives = 438/438 (100%)
Query: 1 MANIAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60
MANIAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL
Sbjct: 1 MANIAIKDNRLLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLL 60
Query: 61 RIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEE 120
RIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEE
Sbjct: 61 RIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEE 120
Query: 121 RRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180
RRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA
Sbjct: 121 RRKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTA 180
Query: 181 ENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPR 240
ENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPR
Sbjct: 181 ENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPR 240
Query: 241 NRLSPEFRQIVEKIYALMTKKEEKRLNPLENAPGSGIGIFLRHVSTNLLSGLIEAVMAPP 300
NRLSPEFRQIVEKIYALMTKKEEKRLNPLENAPGSGIGIFLRHVSTNLLSGLIEAVMAPP
Sbjct: 241 NRLSPEFRQIVEKIYALMTKKEEKRLNPLENAPGSGIGIFLRHVSTNLLSGLIEAVMAPP 300
Query: 301 YNGKADLPDLANSLQLEADRLFHIGESLQLLQLVNLSGGDITLTESGIRFANLDTDSRKK 360
YNGKADLPDLANSLQLEADRLFHIGESLQLLQLVNLSGGDITLTESGIRFANLDTDSRKK
Sbjct: 301 YNGKADLPDLANSLQLEADRLFHIGESLQLLQLVNLSGGDITLTESGIRFANLDTDSRKK 360
Query: 361 LFAKQLLQHVPLVNLIRRVLDERRLHSAPAARFRNELEDYMSEEYAQETIDTVVSWGRYA 420
LFAKQLLQHVPLVNLIRRVLDERRLHSAPAARFRNELEDYMSEEYAQETIDTVVSWGRYA
Sbjct: 361 LFAKQLLQHVPLVNLIRRVLDERRLHSAPAARFRNELEDYMSEEYAQETIDTVVSWGRYA 420
Query: 421 ELFSYDEQSELFSFDNPQ 438
ELFSYDEQSELFSFDNPQ
Sbjct: 421 ELFSYDEQSELFSFDNPQ 438
>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 137 bits (345), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 129/243 (53%), Gaps = 26/243 (10%)
Query: 35 KVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP--------- 85
K N V GEI+ L+G SG+GKSTLLR I GL G+VL K P
Sbjct: 47 KANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLR 106
Query: 86 ----KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAH 141
+S+VFQ FAL PW TV NVELGL+ I ER+ R ++++ L +
Sbjct: 107 KLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCK 166
Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESM 201
+SGGM QRVGFARAF +LLMDEPFS+LD L L+ +L+ L R +++
Sbjct: 167 INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ---RKLKKTI 223
Query: 202 LMVTHNIEEAVLMCDRVLVFSSNPGRI-----AEEVLISIPHPRNRLSPEFRQIVEKIYA 256
+ V+H+I EA + +R+ + GRI +E+++ HP N EF Q + I A
Sbjct: 224 VFVSHDINEAFRLGNRIAIMEG--GRIIQCGTPQEIIL---HPANCYVSEFIQKLNPITA 278
Query: 257 LMT 259
L+
Sbjct: 279 LVA 281
>gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 262
Score = 99.4 bits (246), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 108/214 (50%), Gaps = 10/214 (4%)
Query: 17 ICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF 76
+ + SL K ++ V+ V+ V GEIVGLLG +G+GK+T ++ GL+ SG +
Sbjct: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
Query: 77 KGKKIKDPPK------DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAID 130
G I P IS + Q ++F LTV EN+ L+ DK++R ++ S +
Sbjct: 85 DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144
Query: 131 LIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
+ + +SGG +R+ AR+ V FPS +L+DEPF+ +D + ++ + DL
Sbjct: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204
Query: 191 WIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSN 224
G +L+ HN+ E + + DR + +
Sbjct: 205 ASRG----IGILITDHNVHEILTLIDRAYIIHAG 234
>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 257
Score = 99.0 bits (245), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 115/217 (52%), Gaps = 14/217 (6%)
Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG---- 78
L K GN L +N NV GE V + G SGSGKSTL+R I + +G+++ G
Sbjct: 23 LNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLN 82
Query: 79 ---KKIKDPPKDISVVFQTFALFPWLTVLENVELG-LKAKGIDKEERRKRALSAIDLIGL 134
+ I + +D+ +VFQ F LF L+VLEN LG + + + K++ + A+ ++ + +
Sbjct: 83 DDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKI 142
Query: 135 DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194
++ +SGG QR AR+ + P ++L DEP SALD + + +I+L EG
Sbjct: 143 ADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEG 202
Query: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
+M+ VTH + A + DRV+ G+I E+
Sbjct: 203 M----TMVCVTHEMGFARQVADRVVFMDQ--GQIVEQ 233
>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 234
Score = 97.4 bits (241), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 113/218 (51%), Gaps = 18/218 (8%)
Query: 35 KVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGK-KIKDPP--KDISVV 91
+ +F V+ E + +LG SG+GKSTLL ++AG P+ G + G+ + P + +S++
Sbjct: 17 QFDFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSIL 76
Query: 92 FQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGMLQ 151
FQ LF LTV +N+ LG+ + + ++ + L+ F + +++SGG Q
Sbjct: 77 FQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQRQ 136
Query: 152 RVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEA 211
RV AR + +LL+DEPF+ D + L + E +L ++LM++HN+E++
Sbjct: 137 RVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQL---TLLMISHNLEDS 193
Query: 212 VLMCDRV-------LVFSSNPGR-----IAEEVLISIP 237
+ + R +V+ +P R I E L+ IP
Sbjct: 194 MQIATRFIVIAGGQIVYDGDPDRLMNGLIPESTLLGIP 231
>gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus
Liberibacter asiaticus str. psy62]
Length = 257
Score = 96.7 bits (239), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 104/190 (54%), Gaps = 15/190 (7%)
Query: 43 GEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQV--------LFKGKKIKDPPKDISVVFQT 94
GEI+G++G SG+GKS L+R I GL+ SG+V L KGK+ + V+FQ
Sbjct: 39 GEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQH 98
Query: 95 FALFPWLTVLENVELGLKAK-GIDKEERRKRALSAIDLIGLDGFESAHTT--EISGGMLQ 151
ALF +TV EN+ + +K + + + I ++GL E+A+ ++SGGM++
Sbjct: 99 GALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPP-ETANLMPFQLSGGMIK 157
Query: 152 RVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEA 211
RV ARA + P LL +DEP S LD + AE LI L L S+ M+TH++
Sbjct: 158 RVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGL---SVYMITHDLNNL 214
Query: 212 VLMCDRVLVF 221
+ C+RV V
Sbjct: 215 ISTCNRVAVI 224
>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 227
Score = 88.2 bits (217), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 110/216 (50%), Gaps = 15/216 (6%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
+L +Q++ S+ +++ VL+ V+ ++ GEIV L+ SG+GKST+L I L P
Sbjct: 6 VLLLQNVKHSY--RQVGKPFPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPD 63
Query: 71 SGQVLFKGK---KIKDPPKD------ISVVFQTFALFPWLTVLENVELGLKAKGIDKEER 121
G V+ + K+ D K I V+Q L +V+EN+ GI+ +
Sbjct: 64 QGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTA 123
Query: 122 RKRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAE 181
+RA+ + + + + + +++ISGG QRV RA P ++L DEP LD+ TA+
Sbjct: 124 YQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQ 183
Query: 182 NLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDR 217
+ + L L + L + L+ THN + A M DR
Sbjct: 184 QVFSILKYLVVRSGL---AALIATHNHDLASQM-DR 215
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 73.9 bits (180), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 103/209 (49%), Gaps = 19/209 (9%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPP-----K 86
VL +N SG++ L+G SGSGKST++ ++ + PSSG + G I+D +
Sbjct: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRE 427
Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLI-----GLDGFESAH 141
IS V Q LF TV N+ +G ++ ++ +A D I G D + +
Sbjct: 428 RISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGEN 486
Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESM 201
+ +SGG QR+ ARA + +L++DE SALD T ENL + ++GR I
Sbjct: 487 GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHT-ENLVRQALSRLMQGRTTI--- 542
Query: 202 LMVTHNIEEAVLMCDRVLVFSSNPGRIAE 230
++ H I ++ D ++ G+++E
Sbjct: 543 -VIAHRI-STIIEADHIIFI--EDGKVSE 567
>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 254
Score = 71.6 bits (174), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 26/214 (12%)
Query: 36 VNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS-----SGQVLFKGKKIKDPPKDI-- 88
+N + + L+G SG GKST LR + + +G+++ GK I D+
Sbjct: 25 INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVR 84
Query: 89 -----SVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAH-- 141
+VFQ FP ++ +NV G + G+ + + + L F
Sbjct: 85 LRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDR 143
Query: 142 ----TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLP 197
+ +SGG QRV ARA V P ++LMDEP SALD + ++ +L E R
Sbjct: 144 LFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVE----ELIHELRES 199
Query: 198 IESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
+ ++++VTH++++A + R +F + G + EE
Sbjct: 200 L-TIVIVTHSMQQAARVSQRAAMF--HMGHLVEE 230
>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of
ABC transporter protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 240
Score = 69.3 bits (168), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 24/197 (12%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVV 91
+L +NF + EIV L+G +GSGKST+ ++I G++ P+ G V K P+ I
Sbjct: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------KRHPQLI--- 74
Query: 92 FQTFALFPWLTVLEN-VELGL-KAKGIDKEERRKRALSAIDLIGLDGFESAHTTEISGGM 149
P +EN + L L + + R L +D + L G + + ++SGG
Sbjct: 75 ---VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGE 131
Query: 150 LQRVGFARAFVVFPSLLLMDEPFSALDV---LTAENLRTDLIDLWIEGRLPIESMLMVTH 206
QR A+A + P+LL++DEP +D L+ L T + G +L+++H
Sbjct: 132 FQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG------ILLISH 185
Query: 207 NIEEAVLMCDRVLVFSS 223
N+ + D V+ ++
Sbjct: 186 NLHMVMASTDTVICLNN 202
>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
[Candidatus Liberibacter asiaticus str. psy62]
Length = 280
Score = 67.8 bits (164), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 19/217 (8%)
Query: 12 LEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSS 71
LE++DI ++ L+ VN + I L+G +G+GKSTL + I GL+
Sbjct: 12 LELKDISVTYP-----NGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDK 66
Query: 72 GQVLFKGKKIKDPPKD--ISVVFQTFAL---FPWLTVLENVELG----LKAKGIDKEERR 122
G + + +++ K I+ + QT ++ FP L V + V +G + + +
Sbjct: 67 GSISIFNQTVENALKADLIAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDY 125
Query: 123 KRALSAIDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAEN 182
+ A++ +G+ E+S G +RV ARA +++MDEPF+A+D T
Sbjct: 126 RIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTERE 185
Query: 183 LRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVL 219
+ L L E + +L+ THNI CDR +
Sbjct: 186 MIFLLKSLLNEDIM----ILVSTHNINSIPSFCDRTI 218
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 60.8 bits (146), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 115/246 (46%), Gaps = 34/246 (13%)
Query: 9 NRLLEIQDICQSFSLKKISGNLL-------------VLDKVNFNVSSGEIVGLLGRSGSG 55
N +EIQ+ S LK +G+++ + ++F ++ + L+G SG G
Sbjct: 336 NEKIEIQNAVNSKDLKIKNGHIVFNNVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVG 395
Query: 56 KSTLLRIIAGLVSPSSGQVLFKGKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKG 115
KST+ +++ L G + G+ IK K+ + QT + P T+L N L
Sbjct: 396 KSTVAKLLYRLYDIKGGIITIDGQDIKKITKE--SLRQTIGIIPQDTILFNDTLRYNILY 453
Query: 116 IDKEERRKRALSAIDLIGL--------DGFESA---HTTEISGGMLQRVGFARAFVVFPS 164
+ + +A+++ L +G+++ ++SGG QRV ARA + P
Sbjct: 454 GNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPP 513
Query: 165 LLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSN 224
+++ DE S+LD++T +++T L L + R + L++ H + + D ++VF +
Sbjct: 514 IIIFDEATSSLDIITERHIQTALATL-SKNR----TTLVIAHRL-STITDADNIIVF--D 565
Query: 225 PGRIAE 230
G + E
Sbjct: 566 QGTVVE 571
>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 539
Score = 59.7 bits (143), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 89/171 (52%), Gaps = 16/171 (9%)
Query: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70
++E + I +S++ + L++D ++F + G IVG++G +G+GK+TL R++ G SP
Sbjct: 317 VIEAKGISKSYN------DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD 370
Query: 71 SGQVLFKGKKIKDPPKDISVVFQTF-ALFPWLTVLENVELGLKAKGIDKEERRKRA-LSA 128
SG + G+ + +S V Q+ +L TV E++ G ++ E RA SA
Sbjct: 371 SGTIHV-GETVC-----LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA 424
Query: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179
+ G D + +SGG RV A+ +++L+DEP + LD T
Sbjct: 425 FNFKGGD--QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473
Score = 48.5 bits (114), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 104/243 (42%), Gaps = 62/243 (25%)
Query: 17 ICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF 76
I L K+ G+ VLD +N + +G+LG +G+GKST+LRI+AG+ +G+
Sbjct: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL 65
Query: 77 K-----GKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKG----------IDKEER 121
G ++P D+S TV EN+ G+ K ++ E+
Sbjct: 66 ATGFTVGYLPQEPQLDLSK-----------TVKENIIEGVAHKQAILDRYNELMMNYSEK 114
Query: 122 RKRALSAI-DLIGLDGF-----------ESAHT-------TEISGGMLQRVGFARAFVVF 162
+ ++ + D+I G ES H T +SGG +RV + +
Sbjct: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174
Query: 163 PSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES--MLMVTH------NIEEAVLM 214
P LLL+DEP + LD T W+E L S +LMVTH N+ +L
Sbjct: 175 PDLLLLDEPTNHLDAETI---------AWMEKYLREYSGAVLMVTHDRYFLDNVTNWILE 225
Query: 215 CDR 217
DR
Sbjct: 226 VDR 228
>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
subunits [Candidatus Liberibacter asiaticus str. psy62]
Length = 528
Score = 55.8 bits (133), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 11/156 (7%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-----DPPK 86
+L VNF V GE + L+G SG+GK+++ +I P SG V +G ++ + +
Sbjct: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRR 364
Query: 87 DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGL--DGFESA---H 141
I+ V Q + +V +N+ +G + + A + IG +G+++
Sbjct: 365 FIAWVPQH-PIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILGDG 423
Query: 142 TTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
+S G +QR+ ARA + +LL+DE SALD+
Sbjct: 424 AVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDI 459
>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
asiaticus str. psy62]
Length = 565
Score = 52.4 bits (124), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 99/199 (49%), Gaps = 14/199 (7%)
Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKK-----IKDPP 85
L+ ++F + G + G SG GKS L + GL++ G + F ++ I+
Sbjct: 346 LICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFS 405
Query: 86 KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAI-DLIGL-DGFESAHTT 143
I + Q +LFP +++ EN+ L + ++ + + D++ L +G+++ + +
Sbjct: 406 AQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCS 464
Query: 144 -EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESML 202
EI ++Q++ +R P++LLMDEP LD N T L+ + E + ++++
Sbjct: 465 DEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT-LLKQFKENK---KTIV 520
Query: 203 MVTHNIEEAVLMCDRVLVF 221
+++H+ + M D L+F
Sbjct: 521 IISHD-PTIISMSDFSLIF 538
>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 610
Score = 52.0 bits (123), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 28 GNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFK-----GKKIK 82
G + +L V ++ E + L+G +GSGKSTLL+I AG+ P SG V G +
Sbjct: 16 GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQ 75
Query: 83 DPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFESAHT 142
+P D+S F T + + T+ + +E + L +L D E+
Sbjct: 76 NP--DLS-HFSTISQYIDDTIKDTIEAPYSPYSL---------LKKFNLREQDRIEN--- 120
Query: 143 TEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
+S G + V + + P +L++DEP + LD T + +L+ +
Sbjct: 121 --LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKI 166
Score = 46.2 bits (108), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 34/188 (18%)
Query: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKKIK-------- 82
LV+ + + GE +G++G +G+GK+TLL+++ G + P G + G +K
Sbjct: 298 LVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFITL-GTNLKIATIDQKR 356
Query: 83 ---DPPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAIDLIGLDGFES 139
DP K +L +LT L ++ E R A D +
Sbjct: 357 EDIDPDK---------SLASYLTGSSGDSLMVRG------ESRHVAGYIKDFLFHPDQAH 401
Query: 140 AHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIE 199
+ +SGG R AR + L+MDEP + LD T + L + L +G
Sbjct: 402 SLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTITQL--QG----- 454
Query: 200 SMLMVTHN 207
++L+V+H+
Sbjct: 455 TILIVSHD 462
>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 249
Score = 51.6 bits (122), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 17/163 (10%)
Query: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPSSGQVLFKGKKIKD------ 83
++ +N V E+V ++G +GSGKSTL +++G ++G +L+KG+ I D
Sbjct: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
Query: 84 PPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEE---------RRKRALSAIDLIGL 134
K I + FQ P + +++ +++ L + + E R+ R ++A I +
Sbjct: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINM 137
Query: 135 DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
D + SGG + + ++ PSL ++DE S LD+
Sbjct: 138 DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
>gi|254781017|ref|YP_003065430.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 324
Score = 26.6 bits (57), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 245 PEFRQIVEKIYALMTKKEEKRLNPLEN 271
PE +I +KIYALM K + L N
Sbjct: 204 PEINEINQKIYALMGKLSQISCQALRN 230
>gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str.
psy62]
Length = 311
Score = 25.0 bits (53), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 20/62 (32%)
Query: 34 DKVNFNVSSGEIVGLLGRSGSGKSTLLR-------------------IIAGLVSPSSGQV 74
D V N SG V L+G + +GKSTL+ I+ G+VS Q+
Sbjct: 14 DFVQDNSRSG-CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQI 72
Query: 75 LF 76
+F
Sbjct: 73 VF 74
>gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus
str. psy62]
Length = 440
Score = 25.0 bits (53), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 10/56 (17%)
Query: 19 QSFSLKKISGNLLVL-DKVNFNVSSGEI---------VGLLGRSGSGKSTLLRIIA 64
Q+FS K++ ++L L + ++ ++S G++ + +LG S +GKS+L +A
Sbjct: 185 QNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240
>gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62]
Length = 648
Score = 24.6 bits (52), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 362 FAKQLLQHVPLVNLIRRVLDERR 384
F K LL H+P+ NLI + +D R
Sbjct: 7 FIKDLLIHIPISNLIGQYVDWDR 29
>gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 438
Score = 24.3 bits (51), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 43 GEIVGLLGRSGSGKSTLLRIIA 64
G+ +G+ SG GKSTLL + A
Sbjct: 161 GQRIGVFAGSGIGKSTLLSMFA 182
>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
Length = 647
Score = 24.3 bits (51), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 20/106 (18%)
Query: 48 LLGRSGSGKSTLLRIIAG-------LVSPSSGQVLFKG---KKIKDPPKDISVVFQTFAL 97
L+G G+GK+ L R +AG +S S LF G +++D + Q
Sbjct: 186 LVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVRD------MFEQAKNN 239
Query: 98 FPWLTVLENVELGLKAKGI---DKEERRKRALSAIDLIGLDGFESA 140
P + ++ ++ + +GI + R++ L+ + L+ +DGFES+
Sbjct: 240 SPCIVFVDEIDAVGRHRGIGLGGGNDEREQTLNQL-LVEMDGFESS 284
>gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic murein transglycosylase signal
peptide protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 288
Score = 24.3 bits (51), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 17 ICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGS-----GKSTLLRIIAGLV 67
I Q +LKK + LL+ K + V G ++ L G GK+ LL +A L
Sbjct: 104 IAQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLA 159
>gi|254780442|ref|YP_003064855.1| pyruvate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 480
Score = 23.5 bits (49), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 9/36 (25%), Positives = 23/36 (63%)
Query: 292 LIEAVMAPPYNGKADLPDLANSLQLEADRLFHIGES 327
++E+++ P+ +A++ D+A ++ EAD + E+
Sbjct: 279 MLESMVTSPFPTRAEVSDVATAVFEEADAIMLSAET 314
>gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter
asiaticus str. psy62]
Length = 480
Score = 23.5 bits (49), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Query: 196 LPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEEVLISIPHPRNRLSPEFR-QIVEKI 254
+ E M T E + D V+V S+ + + + ++ R+ + P F+ Q+ E
Sbjct: 235 INFEKMNSYTVTSESNPIFIDGVVVSSNQGSAVPKGKIKALLQIRDSVVPIFQNQLDEMA 294
Query: 255 YALMTKKEEKRLNPL----ENAPGSGIGIFLRHVSTNLLSGLIEAVMAPP 300
L+ EK +P+ EN PG I ++ + L G+ E + P
Sbjct: 295 RVLIGSFSEK--DPIAGNSENVPGLFIADGIKDLDNKLCQGISETICVNP 342
>gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 504
Score = 23.5 bits (49), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIA 64
L +S + LDK + +++ + GR G GK++L IA
Sbjct: 199 LAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIA 240
>gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus
str. psy62]
Length = 478
Score = 23.1 bits (48), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 19 QSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTL-LRIIAGLVSPSSGQVLFK 77
QS ++ + V+D ++ G+I GL G +G GK+ L + +I + G +F
Sbjct: 126 QSTDASILTTGIKVIDLISPYQKGGKI-GLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184
Query: 78 G 78
G
Sbjct: 185 G 185
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.138 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 273,919
Number of Sequences: 1233
Number of extensions: 11547
Number of successful extensions: 88
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 39
length of query: 438
length of database: 328,796
effective HSP length: 77
effective length of query: 361
effective length of database: 233,855
effective search space: 84421655
effective search space used: 84421655
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)