Query         gi|254780598|ref|YP_003065011.1| outer membrane protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 205
No_of_seqs    139 out of 814
Neff          7.4 
Searched_HMMs 39220
Date          Sun May 29 23:11:10 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780598.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 COG3637 Opacity protein and re 100.0 3.2E-33   8E-38  188.5  18.8  178    1-205     1-199 (199)
  2 PRK10808 outer membrane protei 100.0 6.1E-32 1.6E-36  181.9  17.9  173    1-205     1-195 (347)
  3 pfam01389 OmpA_membrane OmpA-l 100.0 2.2E-28 5.5E-33  163.6  16.8  148   54-205     5-174 (175)
  4 PRK09408 ompX outer membrane p  99.9 2.6E-20 6.6E-25  122.1  16.3  169    1-205     1-171 (171)
  5 pfam06316 Ail_Lom Enterobacter  99.8 1.2E-17 3.2E-22  108.4  16.1  170    1-205     1-199 (199)
  6 PRK10959 outer membrane protei  99.6 5.7E-14 1.4E-18   89.6  17.5  182    1-205     1-212 (212)
  7 pfam02530 Porin_2 Porin subfam  99.5 9.9E-13 2.5E-17   83.2  14.7   78  114-192   245-357 (378)
  8 pfam07437 YfaZ YfaZ precursor.  99.4 1.4E-11 3.7E-16   77.2  14.6  175    1-205     1-180 (180)
  9 pfam02462 Opacity Opacity fami  99.3 1.2E-11 3.1E-16   77.6  10.3  115   83-205     2-126 (126)
 10 pfam05736 OprF OprF membrane d  99.2 2.6E-10 6.5E-15   70.8  12.7  174    1-205     1-180 (184)
 11 pfam03922 OmpW OmpW family. Th  99.1   1E-08 2.6E-13   62.6  15.6  130   72-205    32-189 (189)
 12 COG3047 OmpW Outer membrane pr  99.0 1.8E-08 4.5E-13   61.3  14.2  130   72-205    54-213 (213)
 13 PRK10716 long-chain fatty acid  98.4 7.1E-05 1.8E-09   42.8  15.6   79  126-205   297-393 (437)
 14 pfam03349 Toluene_X Outer memb  98.3 0.00014 3.7E-09   41.2  15.8   85  120-205   261-366 (415)
 15 COG2067 FadL Long-chain fatty   98.2 2.6E-05 6.5E-10   45.1  10.8   88  115-205   285-391 (440)
 16 PRK10716 long-chain fatty acid  98.0 0.00026 6.6E-09   39.9  12.9   66  118-184   153-245 (437)
 17 pfam03797 Autotransporter Auto  97.9  0.0011 2.8E-08   36.7  13.8  130   54-184    85-258 (265)
 18 pfam03349 Toluene_X Outer memb  97.8  0.0016 4.1E-08   35.8  14.9   85  118-205   314-415 (415)
 19 pfam10082 DUF2320 Uncharacteri  97.6  0.0026 6.7E-08   34.7  17.5   48  157-205   329-380 (380)
 20 pfam06629 MipA MltA-interactin  97.6  0.0028 7.1E-08   34.6  17.4  117   78-205    87-226 (226)
 21 pfam00267 Porin_1 Gram-negativ  97.6  0.0029 7.3E-08   34.5  15.4   43  162-205   286-334 (334)
 22 COG2067 FadL Long-chain fatty   97.5  0.0037 9.5E-08   34.0  12.1   84  118-205   339-440 (440)
 23 cd00342 gram_neg_porins Porins  97.4  0.0052 1.3E-07   33.2  11.8   24  163-187   275-298 (329)
 24 COG3203 OmpC Outer membrane pr  97.3  0.0068 1.7E-07   32.6  11.7   49  156-205   298-354 (354)
 25 pfam11854 DUF3374 Protein of u  97.3  0.0081 2.1E-07   32.2  13.3   42  162-205   221-283 (675)
 26 cd00342 gram_neg_porins Porins  97.0   0.015 3.8E-07   30.9  17.5  141   52-205   139-283 (329)
 27 TIGR03509 OMP_MtrB_PioB decahe  97.0   0.017 4.2E-07   30.6  13.8   67  119-185   486-559 (649)
 28 COG3203 OmpC Outer membrane pr  96.9   0.019 4.7E-07   30.4  13.7   28    1-30      1-28  (354)
 29 pfam05420 BCSC_C Cellulose syn  96.8   0.024 6.2E-07   29.8  17.3   50  153-205   287-336 (339)
 30 pfam03797 Autotransporter Auto  96.7   0.029 7.3E-07   29.4  17.1  111   73-185    70-203 (265)
 31 pfam05736 OprF OprF membrane d  96.6   0.004   1E-07   33.8   4.8   86   74-168    89-179 (184)
 32 PRK10554 outer membrane porin   96.6   0.034 8.6E-07   29.0  11.9   43  162-205   324-373 (373)
 33 TIGR03016 pepcterm_hypo_1 unch  96.6   0.035   9E-07   28.9  14.8   80  120-205   348-431 (431)
 34 pfam10082 DUF2320 Uncharacteri  96.5   0.036 9.2E-07   28.9  16.6   45  160-205   295-343 (380)
 35 pfam11854 DUF3374 Protein of u  96.5   0.038 9.6E-07   28.8  11.1   23    1-25      1-23  (675)
 36 PRK09980 ompL outer membrane p  96.1   0.064 1.6E-06   27.6  13.3   77  124-205   152-230 (230)
 37 PRK09752 adhesin; Provisional   96.1   0.066 1.7E-06   27.5  13.0   26  158-184  1205-1230(1250)
 38 PRK11528 hypothetical protein;  96.0   0.071 1.8E-06   27.4  14.3   45  159-205   208-254 (254)
 39 pfam11383 DUF3187 Protein of u  96.0   0.041   1E-06   28.6   7.3  119   79-205   117-243 (273)
 40 pfam00267 Porin_1 Gram-negativ  96.0   0.076   2E-06   27.2  14.8   80  120-205   210-295 (334)
 41 PRK09980 ompL outer membrane p  96.0   0.013 3.3E-07   31.2   4.7   63  120-187   106-171 (230)
 42 PRK10993 outer membrane protea  95.7     0.1 2.6E-06   26.5  10.0   49  156-205   240-311 (311)
 43 PRK13483 enterobactin receptor  95.4    0.13 3.4E-06   26.0  14.8   40  164-205   616-663 (663)
 44 pfam09381 Porin_OmpG Outer mem  95.3    0.14 3.6E-06   25.8   8.5   81  120-205   193-280 (280)
 45 COG3713 OmpV Outer membrane pr  95.2    0.15 3.8E-06   25.7  15.7   80  125-205   156-258 (258)
 46 pfam10626 TraO Conjugative tra  95.2    0.15 3.8E-06   25.7  11.4  174    1-205     1-191 (193)
 47 pfam01389 OmpA_membrane OmpA-l  94.8     0.2 5.2E-06   25.1  13.0   89   89-180     5-95  (175)
 48 COG5338 Uncharacterized protei  94.7   0.019 4.9E-07   30.3   2.1   62  115-177   262-323 (468)
 49 PRK12580 outer membrane protea  94.4    0.25 6.3E-06   24.6   9.7   47  158-205   242-312 (312)
 50 pfam06178 KdgM Oligogalacturon  94.4    0.26 6.5E-06   24.5  15.6   51  154-205   167-218 (218)
 51 COG4625 Uncharacterized protei  94.0    0.31 7.8E-06   24.1  11.2   46  157-205   532-577 (577)
 52 PRK10455 periplasmic protein;   93.9   0.055 1.4E-06   28.0   3.1   29    1-29      1-29  (161)
 53 pfam06727 DUF1207 Protein of u  93.7    0.36 9.1E-06   23.8   7.7   84  120-205   217-337 (337)
 54 PRK11447 cellulose synthase su  93.6    0.36 9.2E-06   23.8  15.4   49  153-204  1089-1137(1158)
 55 pfam01278 Omptin Omptin family  93.5    0.38 9.7E-06   23.6   9.3   49  156-205   223-295 (295)
 56 pfam06551 DUF1120 Protein of u  93.3   0.055 1.4E-06   28.0   2.2   34    1-34      1-34  (145)
 57 pfam04338 DUF481 Protein of un  93.1    0.44 1.1E-05   23.3  16.1   47  158-205   160-210 (210)
 58 PRK10159 outer membrane phosph  93.0    0.46 1.2E-05   23.2  12.3   43  162-205   305-351 (351)
 59 pfam11059 DUF2860 Protein of u  92.6    0.53 1.3E-05   22.9  13.6   74  131-204   218-297 (297)
 60 PRK10002 outer membrane protei  92.1    0.62 1.6E-05   22.6  12.3   43  162-205   316-362 (362)
 61 smart00869 Autotransporter Aut  92.0    0.63 1.6E-05   22.5  16.3   24  160-184   231-254 (261)
 62 pfam05275 CopB Copper resistan  91.8    0.67 1.7E-05   22.4   9.0   42  163-205   159-210 (210)
 63 PRK03757 hypothetical protein;  91.8    0.11 2.9E-06   26.3   2.3   24    1-25      1-24  (191)
 64 pfam01617 Surface_Ag_2 Surface  91.3    0.77   2E-05   22.1  15.0  174    2-186     4-234 (279)
 65 pfam03502 Channel_Tsx Nucleosi  90.9    0.84 2.1E-05   21.9  13.5   49  155-205   205-259 (259)
 66 pfam02264 LamB LamB porin. Mal  90.2    0.97 2.5E-05   21.6  15.1  110   90-203   273-395 (399)
 67 PRK09934 putative fimbrial pro  90.2    0.22 5.5E-06   24.9   2.4   23    1-23      1-23  (171)
 68 TIGR01414 autotrans_barl outer  89.7     1.1 2.8E-05   21.3  11.2  134   69-205   294-454 (454)
 69 PRK10177 hypothetical protein;  89.3     1.2   3E-05   21.1  10.9   49  153-205   246-294 (452)
 70 PRK12696 flgH flagellar basal   88.7    0.79   2E-05   22.0   4.4   19    1-20      2-20  (238)
 71 PRK13513 putative outer membra  88.1     1.4 3.6E-05   20.7  15.6   42  162-205   611-660 (660)
 72 COG5571 Autotransporter protei  88.0    0.22 5.7E-06   24.8   1.2  133   68-205    81-239 (239)
 73 PRK13861 type IV secretion sys  87.7    0.34 8.6E-06   23.9   2.0   28    1-31      2-29  (293)
 74 pfam06082 DUF940 Bacterial put  86.6     1.1 2.8E-05   21.3   4.1   42  164-205   168-214 (661)
 75 pfam11924 DUF3442 Protein of u  86.5     1.8 4.5E-05   20.2  14.2   49  153-205   201-249 (280)
 76 TIGR03014 EpsL exopolysacchari  85.3     2.1 5.2E-05   19.9  15.7   43  162-205   335-381 (381)
 77 PRK09782 bacteriophage N4 rece  85.0    0.29 7.3E-06   24.3   0.5   67  130-205   910-987 (987)
 78 pfam07424 TrbM TrbM. This fami  83.8    0.68 1.7E-05   22.3   1.9   25    1-26      1-25  (189)
 79 pfam12094 DUF3570 Protein of u  83.1     2.6 6.6E-05   19.4  12.3   76  125-202   210-302 (407)
 80 PRK13697 cytochrome c6; Provis  83.1     0.8   2E-05   22.0   2.1   27    1-27      1-29  (111)
 81 pfam05079 DUF680 Protein of un  83.1    0.73 1.9E-05   22.2   1.9   24    1-27      1-24  (73)
 82 pfam07996 T4SS Type IV secreti  82.9    0.86 2.2E-05   21.8   2.2   26    1-27      1-26  (217)
 83 PRK09701 D-allose transporter   82.2    0.96 2.4E-05   21.6   2.2   27    1-27      1-27  (311)
 84 PRK00031 lolA outer-membrane l  81.9    0.79   2E-05   22.0   1.7   25    1-25      1-25  (201)
 85 pfam11231 DUF3034 Protein of u  81.7     2.9 7.5E-05   19.1   6.6   57  127-184   148-204 (257)
 86 PRK12751 cpxP periplasmic stre  81.4     1.7 4.3E-05   20.3   3.2   26    1-27      1-26  (162)
 87 PRK10363 cpxP periplasmic repr  81.3     1.5 3.9E-05   20.5   3.0   24    1-24      1-24  (166)
 88 pfam09411 PagL Lipid A 3-O-dea  81.1     3.1 7.9E-05   19.0  15.4   71  132-205    64-139 (139)
 89 PRK09733 putative fimbrial pro  80.1    0.95 2.4E-05   21.6   1.6   23    1-26      2-24  (181)
 90 PRK12698 flgH flagellar basal   80.0     3.4 8.7E-05   18.8   4.4   13    1-13      1-13  (224)
 91 pfam04234 CopC Copper resistan  79.7     2.4   6E-05   19.6   3.5   35    1-35      1-36  (120)
 92 PRK13893 conjugal transfer pro  79.2     1.1 2.7E-05   21.3   1.6   26    1-26      1-27  (193)
 93 pfam04076 BOF Bacterial OB fol  79.1     1.6   4E-05   20.5   2.4   21    1-25      1-21  (126)
 94 PRK03577 acid shock protein pr  79.0     1.5 3.7E-05   20.7   2.2   33    1-35      1-33  (102)
 95 PRK12700 flgH flagellar basal   78.5     3.8 9.7E-05   18.5   4.4   20    1-20      3-23  (230)
 96 COG3137 Putative salt-induced   77.3     4.1 0.00011   18.3   4.9  112   53-181    50-161 (262)
 97 PRK09495 glnH glutamine ABC tr  76.2     1.9 4.9E-05   20.0   2.2   25    1-26      1-25  (247)
 98 COG4571 OmpT Outer membrane pr  75.9     4.5 0.00012   18.1  14.6   47  158-205   245-314 (314)
 99 PRK03641 hypothetical protein;  73.9     1.9 4.8E-05   20.1   1.7   27    1-30      1-27  (220)
100 PRK12701 flgH flagellar basal   73.9     5.2 0.00013   17.8   4.6   25    1-25      1-25  (230)
101 pfam04575 DUF560 Protein of un  73.3     5.4 0.00014   17.7  11.4  113   71-190    92-239 (301)
102 PRK12450 foldase protein PrsA;  73.1     2.3 5.7E-05   19.7   1.9   21    1-21      4-26  (309)
103 PRK02889 tolB translocation pr  72.6     2.2 5.6E-05   19.7   1.7   24    1-24      4-27  (430)
104 PRK11260 cystine transporter s  72.4     3.1 7.8E-05   19.0   2.5   26    1-26      5-30  (264)
105 PRK03095 prsA peptidylprolyl i  72.4       3 7.6E-05   19.0   2.4   25    1-25      1-25  (287)
106 PRK10954 periplasmic protein d  72.3     4.6 0.00012   18.1   3.3   21    1-25      1-21  (207)
107 TIGR02953 penta_MxKDx pentapep  72.2     2.7 6.9E-05   19.3   2.1   24    2-25      1-27  (89)
108 PRK10259 hypothetical protein;  70.7     3.3 8.5E-05   18.8   2.4   31    1-32      1-31  (86)
109 PRK10942 serine endoprotease;   70.1     4.3 0.00011   18.2   2.8   19    1-19      1-19  (474)
110 pfam10566 Glyco_hydro_97 Glyco  69.5     3.2   8E-05   18.9   2.0   32    1-32      1-32  (643)
111 pfam07396 Porin_O_P Phosphate-  69.4     6.6 0.00017   17.3  14.2   44  161-205   313-361 (361)
112 PRK10780 periplasmic chaperone  68.6     2.6 6.7E-05   19.3   1.5   22    1-25      1-22  (161)
113 cd07306 Porin3_VDAC Voltage-de  67.8     7.2 0.00018   17.1  13.8   16  170-185   190-205 (276)
114 PRK11627 hypothetical protein;  67.6     4.9 0.00012   17.9   2.7   16    1-17      2-17  (192)
115 pfam11336 DUF3138 Protein of u  67.5     3.3 8.5E-05   18.8   1.8   24  162-186   463-486 (514)
116 pfam10836 DUF2574 Protein of u  66.1     3.3 8.3E-05   18.8   1.5   26    1-27      1-26  (93)
117 PRK10355 xylF D-xylose transpo  66.0     5.1 0.00013   17.9   2.5   27    1-27      1-27  (330)
118 pfam07383 DUF1496 Protein of u  66.0     5.1 0.00013   17.9   2.5   31    1-31      1-31  (88)
119 PRK10672 rare lipoprotein A; P  65.9     7.9  0.0002   16.9   4.0   20    1-20      1-20  (369)
120 pfam03249 TSA Type specific an  65.7     7.8  0.0002   16.9   3.4   75  129-205   443-524 (524)
121 TIGR03525 GldK gliding motilit  65.3       6 0.00015   17.5   2.8   46    1-49      1-46  (449)
122 PRK12788 flgH flagellar basal   64.8     8.3 0.00021   16.8   4.1   18    1-18      1-18  (231)
123 pfam12099 DUF3575 Protein of u  64.3     8.5 0.00022   16.7  10.0   31  158-188   117-154 (186)
124 pfam11777 DUF3316 Protein of u  64.2     3.6 9.3E-05   18.6   1.4   21    1-25      1-21  (114)
125 COG4991 Uncharacterized protei  64.1     7.4 0.00019   17.0   3.0   24    1-24     10-33  (155)
126 PRK10877 thiol:disulfide inter  63.6     3.2 8.1E-05   18.9   1.1   25    1-27      1-25  (232)
127 COG3700 AphA Acid phosphatase   63.4     8.1 0.00021   16.8   3.1   27    1-27      1-27  (237)
128 pfam06291 Lambda_Bor Bor prote  63.3     4.3 0.00011   18.3   1.7   23    1-25      1-23  (97)
129 PRK10653 D-ribose transporter   63.2     5.1 0.00013   17.8   2.1   26    1-26      3-28  (295)
130 pfam07901 DUF1672 Protein of u  63.1     4.8 0.00012   18.0   1.9   22    1-22      1-22  (304)
131 pfam05538 Campylo_MOMP Campylo  62.8     9.1 0.00023   16.6   5.4   14  192-205   424-437 (437)
132 COG2829 PldA Outer membrane ph  61.9     9.5 0.00024   16.5   8.0   76  114-205   236-313 (317)
133 pfam12276 DUF3617 Protein of u  61.8     7.2 0.00018   17.1   2.6   17    1-17      1-17  (149)
134 PRK12407 flgH flagellar basal   61.6     9.6 0.00024   16.4   3.7   16    2-18      1-16  (220)
135 PRK09465 tolC outer membrane c  61.3     5.2 0.00013   17.8   1.8   29    1-30      1-29  (446)
136 PRK13484 putative iron-regulat  60.9     9.9 0.00025   16.4  15.3   85  120-205   585-682 (682)
137 PRK06763 F0F1 ATP synthase sub  60.5     1.8 4.7E-05   20.1  -0.6   18    1-18      3-20  (213)
138 PRK09501 potD spermidine/putre  60.2     7.2 0.00018   17.1   2.4   25    1-25      1-25  (348)
139 COG3678 CpxP P pilus assembly/  60.0     6.4 0.00016   17.4   2.1   31    1-31      2-32  (160)
140 PRK10564 maltose regulon perip  60.0     8.5 0.00022   16.7   2.7   30    1-30      1-30  (303)
141 PRK12395 maltoporin; Provision  59.9     5.8 0.00015   17.5   1.9   25    1-25      1-25  (419)
142 PRK10044 ferrichrome outer mem  59.6      10 0.00027   16.2  15.0   25  161-186   313-337 (730)
143 cd01345 OM_channels Porin supe  58.9      11 0.00027   16.2   4.2   22  162-184   191-212 (253)
144 PRK10802 peptidoglycan-associa  58.8      11 0.00028   16.2   3.3   17    1-19      7-23  (173)
145 pfam06649 DUF1161 Protein of u  58.8     4.9 0.00013   17.9   1.3   26    1-30      1-26  (75)
146 pfam12262 Lipase_bact_N Bacter  57.6     6.9 0.00018   17.2   1.9   16    1-16      1-16  (269)
147 TIGR03502 lipase_Pla1_cef extr  56.0     7.8  0.0002   16.9   2.0   18    1-18      1-19  (792)
148 PRK09915 putative outer membra  53.2      14 0.00035   15.7   3.7   21    1-21      6-26  (488)
149 PRK10449 heat-inducible protei  52.5      10 0.00026   16.3   2.1   17    1-18      1-17  (140)
150 PRK11459 multidrug resistance   52.3      14 0.00036   15.6   3.8   28    1-28      1-28  (478)
151 COG4314 NosL Predicted lipopro  51.9      14 0.00036   15.6   2.7   23    1-23      1-23  (176)
152 pfam12071 DUF3551 Protein of u  51.2     9.9 0.00025   16.4   1.9   11    1-11      1-11  (82)
153 pfam11853 DUF3373 Protein of u  51.0      15 0.00038   15.5   9.8   54  131-184   332-392 (485)
154 pfam03895 YadA YadA-like C-ter  50.9      15 0.00038   15.5   6.1   38  162-205    41-78  (78)
155 PRK10049 pgaA outer membrane p  50.8      15 0.00038   15.5   6.4   48  157-205   769-818 (818)
156 PRK11553 alkanesulfonate trans  50.6      14 0.00035   15.7   2.5   25    1-25      1-25  (314)
157 PRK01326 prsA foldase protein   49.4      13 0.00034   15.7   2.3   18    1-18      1-21  (310)
158 PRK10894 hypothetical protein;  49.1      11 0.00029   16.0   1.9   26    1-26      7-32  (184)
159 PRK04405 prsA peptidylprolyl i  48.4      12  0.0003   16.0   1.9   15    1-15      5-19  (298)
160 COG5455 Predicted integral mem  48.3      14 0.00037   15.5   2.3   13    1-13      2-14  (129)
161 PRK10290 superoxide dismutase;  48.1      11 0.00029   16.0   1.8   22    1-26      1-22  (173)
162 PRK01904 hypothetical protein;  47.9      11 0.00027   16.2   1.6   27    1-29      1-27  (217)
163 COG3767 Uncharacterized low-co  47.9      12  0.0003   16.0   1.8   24    1-24      1-25  (95)
164 COG4851 CamS Protein involved   47.4      14 0.00035   15.6   2.1   25    1-26      1-26  (382)
165 TIGR01672 AphA HAD superfamily  47.1      17 0.00044   15.1   3.2   26    1-26      1-27  (248)
166 PRK00249 flgH flagellar basal   47.0      17 0.00044   15.1   4.6   25    1-25      1-25  (231)
167 PRK13680 hypothetical protein;  46.9      14 0.00034   15.7   2.0   25    1-25      5-29  (121)
168 COG2854 Ttg2D ABC-type transpo  46.3      12 0.00031   15.9   1.7   24    1-24      3-26  (202)
169 pfam04357 DUF490 Family of unk  46.2      18 0.00045   15.1   3.8   30  166-205   318-347 (349)
170 PRK11917 bifunctional adhesin/  45.3      17 0.00042   15.2   2.3   18    1-18      3-20  (259)
171 COG3026 RseB Negative regulato  44.4      18 0.00047   15.0   2.4   27    1-27      1-27  (320)
172 PRK11119 proX glycine betaine   43.6      18 0.00046   15.0   2.3   25    2-29      4-28  (332)
173 pfam06518 DUF1104 Protein of u  43.6      19 0.00047   15.0   2.3   23    1-26      1-23  (142)
174 pfam09403 FadA Adhesion protei  43.1      17 0.00044   15.1   2.1   10    1-10      1-10  (126)
175 CHL00132 psaF photosystem I su  42.9      20 0.00051   14.8   2.6   31    1-31      1-31  (185)
176 PRK09967 putative outer membra  42.4      21 0.00052   14.7   2.6   20    1-20      1-21  (160)
177 TIGR02791 VirB5 P-type DNA tra  41.7      21 0.00054   14.7   2.5   16    1-16      1-16  (233)
178 pfam07585 DUF1551 Protein of u  41.4      21 0.00054   14.7  11.2   50  155-205   258-338 (338)
179 PRK04517 hypothetical protein;  41.4      16 0.00041   15.3   1.7   25    1-27      1-26  (216)
180 TIGR03431 PhnD phosphonate ABC  41.4      21 0.00054   14.7   2.5   25    1-26      1-25  (288)
181 PRK11397 dacD D-alanyl-D-alani  41.2      22 0.00055   14.6   3.0   27    1-27      4-30  (390)
182 PRK09838 periplasmic copper-bi  41.0      22 0.00055   14.6   3.2   26    1-27      1-26  (114)
183 PHA00025 major coat protein     40.8      19 0.00048   14.9   2.0   27    1-27      1-27  (76)
184 pfam05643 DUF799 Putative bact  40.7      20 0.00051   14.8   2.1   16    1-17      1-16  (215)
185 TIGR03227 PhnS 2-aminoethylpho  40.6      19 0.00048   15.0   1.9   27    1-27     12-38  (367)
186 pfam08139 LPAM_1 Prokaryotic m  40.2      20 0.00051   14.8   2.0   13    1-13      1-13  (26)
187 COG4771 FepA Outer membrane re  39.2      23 0.00059   14.5   7.6   44  160-205   639-699 (699)
188 TIGR03519 Bac_Flav_fam_1 Bacte  38.6      24  0.0006   14.4  16.8   11    1-11      1-11  (292)
189 PRK13731 conjugal transfer sur  38.5      21 0.00055   14.6   2.0   37    1-37      3-44  (243)
190 PRK10797 glutamate and asparta  38.3      19 0.00049   14.9   1.7   16    1-16      3-18  (302)
191 pfam05150 Legionella_OMP Legio  38.2      24 0.00061   14.4  11.9   41    2-48      5-45  (297)
192 PRK10154 hypothetical protein;  37.1      23 0.00059   14.5   2.0   27    1-27      1-27  (134)
193 PRK09818 putative kinase inhib  37.0      20  0.0005   14.8   1.6   27    1-31      1-27  (183)
194 PRK10316 hypothetical protein;  36.6      20 0.00051   14.8   1.6   29    1-31      1-29  (209)
195 PRK11443 hypothetical protein;  36.5      19  0.0005   14.9   1.5   13    1-13      1-13  (120)
196 COG4549 Uncharacterized protei  36.4      24 0.00062   14.4   2.0   23    1-23      1-23  (178)
197 PRK08482 F0F1 ATP synthase sub  35.7      16 0.00042   15.2   1.0   20    1-26      1-20  (105)
198 pfam02402 Lysis_col Lysis prot  35.6      17 0.00043   15.2   1.1   22    1-22      1-22  (46)
199 PRK09360 lamB maltoporin; Prov  34.9      27  0.0007   14.1  14.4   24    1-26      5-28  (417)
200 pfam11106 YjbE Exopolysacchari  34.4      28 0.00071   14.1   2.4   25    1-27      1-25  (80)
201 COG2825 HlpA Outer membrane pr  33.8      29 0.00073   14.0   2.2   25    1-25      1-25  (170)
202 PRK10957 iron-enterobactin tra  33.5      29 0.00074   14.0   2.8   32    2-33      5-36  (319)
203 pfam00879 Defensin_propep Defe  32.4      30 0.00077   13.9   2.9   29    1-33      1-29  (52)
204 PRK10173 glucose-1-phosphatase  32.2      30 0.00078   13.9   2.3   25    1-26      1-25  (413)
205 TIGR01653 lactococcin_972 bact  32.2      31 0.00078   13.9   2.0   25    1-25      1-28  (149)
206 COG4531 ZnuA ABC-type Zn2+ tra  32.2      31 0.00078   13.9   2.0   31    1-31      4-34  (318)
207 PRK10598 hypothetical protein;  31.8      31 0.00079   13.8   2.2   15    1-15      1-15  (186)
208 pfam10614 Tafi-CsgF Curli prod  31.3      32 0.00081   13.8   2.6   30    1-32      1-30  (142)
209 pfam01308 Chlam_OMP Chlamydia   31.1      32 0.00081   13.8   2.5   23    1-24      1-23  (389)
210 TIGR01098 3A0109s03R phosphona  30.1      33 0.00085   13.7   2.9   18    1-18      1-18  (299)
211 PRK04792 tolB translocation pr  30.1      33 0.00085   13.7   2.2   28    1-31      2-29  (450)
212 PRK10884 putative signal trans  29.4      29 0.00074   14.0   1.4   28    1-29      1-28  (206)
213 TIGR01779 TonB-B12 TonB-depend  29.0      34 0.00087   13.6   1.7   61  119-181   238-303 (644)
214 TIGR00031 UDP-GALP_mutase UDP-  28.7      14 0.00035   15.7  -0.3   18  172-189   291-308 (390)
215 COG4588 AcfC Accessory coloniz  28.3      36 0.00092   13.5   2.0   24    1-27      1-24  (252)
216 PRK11372 lysozyme inhibitor; P  28.2      29 0.00074   14.0   1.3   14    1-14      3-16  (109)
217 COG4150 CysP ABC-type sulfate   27.4      37 0.00095   13.4   1.9   24    1-24      6-29  (341)
218 COG5633 Predicted periplasmic   26.7      38 0.00097   13.4   1.6   25    1-27      1-25  (123)
219 pfam07273 DUF1439 Protein of u  26.4      39   0.001   13.3   2.1   18    1-18      1-18  (177)
220 COG5510 Predicted small secret  26.2      39   0.001   13.3   2.3   20    1-20      2-24  (44)
221 PRK10918 phosphate transporter  26.2      40   0.001   13.3   2.2   28    1-28      4-31  (346)
222 COG3133 SlyB Outer membrane li  26.1      38 0.00098   13.3   1.6   18    1-18      1-19  (154)
223 pfam03482 SIC sic protein. Ser  25.8      40   0.001   13.2   1.7   22    2-23     11-32  (306)
224 PRK03629 tolB translocation pr  25.5      41   0.001   13.2   2.1   22    1-24      1-22  (430)
225 PRK13211 N-acetylglucosamine-b  25.3      41   0.001   13.2   2.1   30    1-30      1-30  (475)
226 cd07303 Porin3 Eukaryotic pori  25.2      41  0.0011   13.2   9.3   18  162-180   213-230 (274)
227 PRK09558 ushA bifunctional UDP  25.0      42  0.0011   13.2   3.0   20    1-20      1-20  (551)
228 PRK10523 lipoprotein involved   24.9      42  0.0011   13.1   3.0   18    1-18      2-19  (234)
229 cd01346 Maltoporin-like The Ma  24.4      43  0.0011   13.1  14.7  113   85-203   260-388 (392)
230 TIGR01165 cbiN cobalt transpor  24.1      43  0.0011   13.1   2.1   16    1-16      3-21  (94)
231 PRK00059 prsA peptidylprolyl i  23.4      45  0.0011   13.0   2.1   21    1-21      4-24  (336)
232 PRK09810 entericidin A; Provis  23.4      45  0.0011   13.0   2.1   21    1-21      2-22  (41)
233 pfam04202 Mfp-3 Foot protein 3  23.4      45  0.0011   13.0   2.4   18    1-18      1-18  (71)
234 COG4143 TbpA ABC-type thiamine  23.2      45  0.0012   13.0   1.9   26    1-26      1-26  (336)
235 PRK03002 prsA peptidylprolyl i  22.4      47  0.0012   12.9   2.2   17    1-17      1-17  (285)
236 COG3489 Predicted periplasmic   21.9      46  0.0012   13.0   1.3   21    1-21      4-24  (359)
237 COG3248 Tsx Nucleoside-binding  21.7      49  0.0012   12.8  12.8   32    1-35      5-36  (284)
238 COG5514 Uncharacterized conser  21.6      49  0.0012   12.8   1.4   22    1-26      1-22  (203)
239 PRK10270 hypothetical protein;  21.6      49  0.0013   12.8   1.9   16    1-16      1-16  (340)
240 TIGR02967 guan_deamin guanine   21.6      24 0.00062   14.4  -0.2   14  121-134   179-193 (426)
241 COG3227 LasB Zinc metalloprote  21.4      50  0.0013   12.8   2.0   28    1-28      1-29  (507)
242 TIGR01655 yxeA_fam conserved h  20.9      51  0.0013   12.7   2.1   25    1-25      1-25  (121)
243 PRK12750 cpxP periplasmic repr  20.9      51  0.0013   12.7   2.0   22    2-24      5-26  (170)
244 pfam01103 Bac_surface_Ag Surfa  20.9      51  0.0013   12.7  11.6   70  133-205   245-317 (317)
245 PRK11289 ampC beta-lactamase;   20.8      51  0.0013   12.7   1.9   27    1-27      4-31  (387)
246 TIGR02448 TIGR02448 conserverd  20.7      48  0.0012   12.9   1.2   24    1-26      1-25  (107)
247 COG3652 Predicted outer membra  20.7      51  0.0013   12.7   2.2   26    1-26      1-26  (170)
248 pfam08194 DIM DIM protein. Dro  20.7      51  0.0013   12.7   2.3   18    1-18      1-19  (37)
249 PRK09474 malE maltose ABC tran  20.6      52  0.0013   12.7   2.3   16    1-16      1-16  (394)
250 PRK09840 catecholate sideropho  20.4      52  0.0013   12.7  11.5   16  171-186   623-638 (760)

No 1  
>COG3637 Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane]
Probab=100.00  E-value=3.2e-33  Score=188.50  Aligned_cols=178  Identities=26%  Similarity=0.367  Sum_probs=140.2

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCEEE
Q ss_conf             94437899999999984100002466543566666555634554444441154210001223333446677-77760268
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRAHHGGRGVVPTIATNRYVPIRHDFNGPYAGLSALYNGSFGEE-AHHNAGGS   79 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~~~~~~~~~~~~~~~~~~~~~~w~G~y~g~~~g~~~~~~~~-~~~~~~~G   79 (205)
                      ||++++++++.+   ...++|.|||.                       ...|.+.|.+++.++.+...+. ...++..|
T Consensus         1 mk~~l~~a~~~~---~~~~~a~aad~-----------------------~~~w~~~~~~g~a~~~~~~~~~~~~~~~~~G   54 (199)
T COG3637           1 MKKLLAAAALAA---LLLSAAAAADA-----------------------AAGWYGTYSGGYAGSDWSGSDSSPSIGFGGG   54 (199)
T ss_pred             CHHHHHHHHHHH---HHHHHHHHHHH-----------------------HCCCCEEEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf             906999999999---87514444444-----------------------2387068863488426567764435665422


Q ss_pred             EE-EEEEEECCCEEEEEEEEEEECCCCCC----CCCCCC--CCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEEC---C
Q ss_conf             99-85464048379984510132155566----662122--32148999897543127677898854477644431---3
Q gi|254780598|r   80 IF-AGYNVEDSCIMYGVEGDVRYTVPVLA----DNIHSL--HGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYET---G  149 (205)
Q Consensus        80 ~~-~GYn~q~~~~V~G~e~d~~~~~~~~~----~~~~~~--~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~---~  149 (205)
                      ++ .|||+|.++.|+|+|+++++......    ......  ..|.++++++++|.++++++||+.+|++..+++.+   .
T Consensus        55 ~~~~g~n~~~~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a~~~~~~~~~~~~Y~~aGvg~~~~k~~~~~~  134 (199)
T COG3637          55 LKLAGYNLKYRYSVLGVEGSFTYTGQSGRYSGGSGKNQVDNKAWYGSLRAGPDYRINDRFSPYGGAGVAYGKVKTSTDEV  134 (199)
T ss_pred             EEEEEEEEECCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCEECCCCEEEEEECCEEEEEEEEECCCC
T ss_conf             16676873358467888988761024665447666444442057899998655105864444040105768998712566


Q ss_pred             CCC-CCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC---------CCCCCEEEEEEEEEEC
Q ss_conf             455-5677520479973466100488679999999975056---------5566226999998539
Q gi|254780598|r  150 KAG-EITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSK---------VEGFYNTISLGVGMKF  205 (205)
Q Consensus       150 ~~~-~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~---------~~~~~~~~~~G~~ykF  205 (205)
                      ... ++++++.+|++|+|+|| .+||||++++||||++|++         .+.+.|+|++||+|||
T Consensus       135 ~~~~~~s~~~~g~~~gAGv~~-~~tdnv~vd~~Y~y~~~g~~~~~~~~~~~~~~~~~v~vGv~YkF  199 (199)
T COG3637         135 GGSADESKTKTGYAYGAGVQY-NPTDNVAIDLGYEYSDFGKKDGVDGGYSGDVKTHTVKVGVGYKF  199 (199)
T ss_pred             CCCCCCCCCEEEEEEEEEEEE-CCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf             741167655788678410798-15598799889998815886456754136401340899605659


No 2  
>PRK10808 outer membrane protein A; Reviewed
Probab=100.00  E-value=6.1e-32  Score=181.87  Aligned_cols=173  Identities=23%  Similarity=0.322  Sum_probs=126.2

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCC
Q ss_conf             9443789999999998410000246654356666655563455444444115421000122333344--------66777
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRAHHGGRGVVPTIATNRYVPIRHDFNGPYAGLSALYNGS--------FGEEA   72 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~~~~~~~~~~~~~~~~~~~~~~w~G~y~g~~~g~~~~--------~~~~~   72 (205)
                      |||++++++++.++++  +.|+||..               ...           +|+|+.+|++..        ..+++
T Consensus         1 MKKt~ial~va~a~~a--~~A~Aa~~---------------dn~-----------wY~G~k~G~s~~~d~~~~~~~~~~d   52 (347)
T PRK10808          1 MKKTAIAIAVALAGFA--TVAQAAPK---------------DNT-----------WYTGAKLGWSQYHDTGFINNNGPTH   52 (347)
T ss_pred             CCHHHHHHHHHHHHHH--HHHHCCCC---------------CCC-----------EEEEEEEEEEEECCCCCCCCCCCCC
T ss_conf             9467999999999777--64312000---------------288-----------7896421100121331246677765


Q ss_pred             CCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCC---CCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECC
Q ss_conf             7760268998546404837998451013215556---6662122321489998975431276778988544776444313
Q gi|254780598|r   73 HHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVL---ADNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETG  149 (205)
Q Consensus        73 ~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~---~~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~  149 (205)
                      ++.+++|+|+|||++.   .+++|..|++.+...   .........+..+|.+|+.|+++|++.+|+++|.++++.+...
T Consensus        53 ~~~~g~G~f~GYqfn~---~~a~E~GYd~lG~~~~~g~~~~~~~~~~g~~La~k~~ypl~d~l~ly~k~G~~y~~~d~~~  129 (347)
T PRK10808         53 KNQLGAGAFGGYQVNP---YLGFEMGYDWLGRMPYKGDVSNGAFKAQGVQLTAKLGYPITDDLDVYTRLGGMVWRADTKS  129 (347)
T ss_pred             CCCCEEEEEEEEEECC---EEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEEEEEEECCCC
T ss_conf             5661245675477254---4889870000285432454447640146788888881045677232578534899712344


Q ss_pred             CC-----CCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEE-CCCC-----CCCCEEEEEEEEEEC
Q ss_conf             45-----55677520479973466100488679999999975-0565-----566226999998539
Q gi|254780598|r  150 KA-----GEITPIAIGGTAGVGVEVGGLSESLVARLEYRASK-YSKV-----EGFYNTISLGVGMKF  205 (205)
Q Consensus       150 ~~-----~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~d-f~~~-----~~~~~~~~~G~~ykF  205 (205)
                      ..     ...+++...+++|+|+|| +||++|.+|+||||.+ .++.     +.+.|.+++|+.|||
T Consensus       130 ~~~~~~~~~~~d~g~s~~~g~GveY-~lt~~~~~R~eYq~~~~igd~~~~g~~~d~~~~slGlsY~F  195 (347)
T PRK10808        130 NVTGGARGKDHDTGVSPVFAGGVEY-AITPEWATRLEYQWTNNIGDANTIGTRPDNGLLSVGVSYRF  195 (347)
T ss_pred             CCCCCCCCCCCCCCCCCEEEEEEEE-EECCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEECC
T ss_conf             5566543235656736206720358-80637268888999810575555574677756999999637


No 3  
>pfam01389 OmpA_membrane OmpA-like transmembrane domain. The structure of OmpA transmembrane domain shows that it consists of an eight stranded beta barrel. This family includes some other distantly related outer membrane proteins with low scores.
Probab=99.96  E-value=2.2e-28  Score=163.63  Aligned_cols=148  Identities=20%  Similarity=0.280  Sum_probs=112.4

Q ss_pred             CCCCCCCCCCCCCC--------CCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCC---CCCCCCCEEEEEEE
Q ss_conf             21000122333344--------66777776026899854640483799845101321555666---62122321489998
Q gi|254780598|r   54 NGPYAGLSALYNGS--------FGEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLAD---NIHSLHGIGGSLRI  122 (205)
Q Consensus        54 ~G~y~g~~~g~~~~--------~~~~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~---~~~~~~~~~~~~~~  122 (205)
                      ..+|+|+++|++.-        ..+++++..++|+|+||||+.   .+++|+.+.+.+.....   ..........+|.+
T Consensus         5 n~~Y~G~~~G~s~~~~~~~~~~~~~~d~~~~~~glf~GYqfn~---~~a~E~gY~~lG~~~~~~~~~~~~~~~~~~~l~~   81 (175)
T pfam01389         5 NTWYTGAKAGWASFHDTGLIEGNGPTHRNSLTAGAFGGYQINN---YLAAELGYDYLGRMPYKGKGKNNAHKAQGVTLSL   81 (175)
T ss_pred             CCEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCC---EEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEE
T ss_conf             9578966402568957634457876567871789998631031---1226874243165433553434540468999999


Q ss_pred             EEEEEECCCEEEEEEEEEEEEEEEECCC-----CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEE-CCC-----CC
Q ss_conf             9754312767789885447764443134-----555677520479973466100488679999999975-056-----55
Q gi|254780598|r  123 RGGYEVSDSLLLYATVGPDVAQKYETGK-----AGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASK-YSK-----VE  191 (205)
Q Consensus       123 r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~-----~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~d-f~~-----~~  191 (205)
                      |+.||++|++.+|+|+|+++++.+.+..     ....+++.+++++|+|+|| +|||||++|+||||++ .++     .+
T Consensus        82 k~~~pl~d~~~ly~K~G~a~~~~d~~~~~~~~~~~~~~d~~~~~~~G~G~eY-~it~~~~~r~eYq~~~~~g~~~~~~~~  160 (175)
T pfam01389        82 KLSYPLTDDLDVYGKVGGALVRADYKFYEDANGKTGNHDTGVSPLFALGVEY-AVTPELAVRLEYQYLNNIGDLHKQGKR  160 (175)
T ss_pred             EEEEEECCCEEEEEEEEEEEEECCCCEECCCCCCCCCCCCCCCEEEEEEEEE-EECCCCEEEEEEEEEHHCCCCCCCCCC
T ss_conf             9888614856799971068996133210256664223567705388888899-807582788889992225853356766


Q ss_pred             CCCEEEEEEEEEEC
Q ss_conf             66226999998539
Q gi|254780598|r  192 GFYNTISLGVGMKF  205 (205)
Q Consensus       192 ~~~~~~~~G~~ykF  205 (205)
                      .++|.+++||.|||
T Consensus       161 ~D~~~~slGlsYrF  174 (175)
T pfam01389       161 PDNGSASLGISYRF  174 (175)
T ss_pred             CCCCEEEEEEEEEC
T ss_conf             77777999999777


No 4  
>PRK09408 ompX outer membrane protein X; Provisional
Probab=99.86  E-value=2.6e-20  Score=122.14  Aligned_cols=169  Identities=20%  Similarity=0.222  Sum_probs=121.4

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             94437899999999984100002466543566666555634554444441154210001223333446677777602689
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRAHHGGRGVVPTIATNRYVPIRHDFNGPYAGLSALYNGSFGEEAHHNAGGSI   80 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~~~~~~~~~~~~~~~~~~~~~~w~G~y~g~~~g~~~~~~~~~~~~~~~G~   80 (205)
                      |||++.+.++++++...+.+|+|++.+                         -+.       ||+.++.....+ ..-|+
T Consensus         1 mkk~~~~s~~~~~~~~~a~~a~A~~sT-------------------------vS~-------GYAQs~~~~~~n-~l~G~   47 (171)
T PRK09408          1 MKKIACLSALAAVLAFTAGTAVAATST-------------------------VTG-------GYAQSDAQGVAN-KMGGF   47 (171)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCE-------------------------EEE-------EEEEECCCCCCC-CCCCE
T ss_conf             922478999999988566666425766-------------------------987-------886420013467-86744


Q ss_pred             EEEEEEECCCEEEEEEEEEEECCCCCCCC-CCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCC-CCCCCCCC
Q ss_conf             98546404837998451013215556666-21223214899989754312767789885447764443134-55567752
Q gi|254780598|r   81 FAGYNVEDSCIMYGVEGDVRYTVPVLADN-IHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGK-AGEITPIA  158 (205)
Q Consensus        81 ~~GYn~q~~~~V~G~e~d~~~~~~~~~~~-~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~-~~~~~~~~  158 (205)
                      -+-|++++++--+|+-+-+.|...+...+ .........+|.+-+.|.+||.+.+|+.+|.+..+++.... ..+.+.++
T Consensus        48 NlKYrYE~dn~~~Gvi~Sftyt~~d~~~~~~~~~~~~YySl~aGPsyR~NdyvS~Ygl~G~a~~k~~~~~~~~~~~s~s~  127 (171)
T PRK09408         48 NLKYRYEEDNSPLGVIGSFTYTEKSRTADSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTEYPTYKHDTSD  127 (171)
T ss_pred             EEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCEEEECCEEEEEEECCEEEEEEEECCCCCCCCCCCC
T ss_conf             88876673698677899999981665667753120469989534427862437522550133689973246764456110


Q ss_pred             EEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             04799734661004886799999999750565566226999998539
Q gi|254780598|r  159 IGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       159 ~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      ++..+|+|++++ ..+||++.+.|+++++.+++  .++|.+|++|||
T Consensus       128 t~fayGAGvQ~N-P~~nvaid~gYE~S~~~~~~--~~~f~vGvGYRF  171 (171)
T PRK09408        128 YGFSYGAGLQFN-PMENVALDFSYEQSRIRSVD--VGTWIAGVGYRF  171 (171)
T ss_pred             CCEEEEEEEEEC-CCCCEEEEEEEEECCCCCEE--ECCEEEEEEECC
T ss_conf             214666547980-67787999876111458727--685998114139


No 5  
>pfam06316 Ail_Lom Enterobacterial Ail/Lom protein. This family consists of several bacterial and phage Ail/Lom-like proteins. The Yersinia enterocolitica Ail protein is a known virulence factor. Proteins in this family are predicted to consist of eight transmembrane beta-sheets and four cell surface-exposed loops. It is thought that Ail directly promotes invasion and loop 2 contains an active site, perhaps a receptor-binding domain. The phage protein Lom is expressed during lysogeny, and encode host-cell envelope proteins. Lom is found in the bacterial outer membrane, and is homologous to virulence proteins of two other enterobacterial genera. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis.
Probab=99.79  E-value=1.2e-17  Score=108.36  Aligned_cols=170  Identities=20%  Similarity=0.188  Sum_probs=112.7

Q ss_pred             CHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             94437899999999984100-00246654356666655563455444444115421000122333344667777760268
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCS-AQAADPVRRAHHGGRGVVPTIATNRYVPIRHDFNGPYAGLSALYNGSFGEEAHHNAGGS   79 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~-A~Aad~~~~~~~~~~~~~~~~~~~~~~~~~~~w~G~y~g~~~g~~~~~~~~~~~~~~~G   79 (205)
                      |||++..+..+++.|++++. |.|+.                       ....-+..|+..|.....       ..-.-|
T Consensus         1 m~~~~~~~l~~~~~l~~~~~~a~A~~-----------------------~~sTvS~GYaQa~~~~~g-------~~~l~G   50 (199)
T pfam06316         1 MRKLCAAILSAAICLAAAGTPASAAE-----------------------HQSTLSAGYLHAHTDAPG-------SDDLNG   50 (199)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCHHHC-----------------------CCCEEEECEEEEECCCCC-------CCCCCC
T ss_conf             90177899999999997277311214-----------------------786686221003147566-------778885


Q ss_pred             EEEEEEEECCCEEEEEEEEEEECCCCCCCC----------CCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECC
Q ss_conf             998546404837998451013215556666----------2122321489998975431276778988544776444313
Q gi|254780598|r   80 IFAGYNVEDSCIMYGVEGDVRYTVPVLADN----------IHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETG  149 (205)
Q Consensus        80 ~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~----------~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~  149 (205)
                      +.+-|++++++- +|+-+-+.|...+.+..          ...+.. ..+|.+-+.|.+||.+.+|+.+|++..+++...
T Consensus        51 ~NlKYRYE~d~~-lGvIgSfTy~~~~~~~~~~~~~~~~~~~~~~~~-YySlmaGPsyR~Nd~vS~Ygl~G~a~~k~~~~~  128 (199)
T pfam06316        51 INVKYRYEFTDT-LGLITSFSYANAEDEQKTHYNDTRWHEDSVRNR-WFSVMAGPSVRVNEWFSAYALAGVAYARVSSFA  128 (199)
T ss_pred             EEEEEEEECCCC-EEEEEEEEEECCCCCCCEECCCCCCCCCCCCCE-EEEEEECCCEEECCEEEEEEECCEEEEEEEECC
T ss_conf             388866441798-078999999615653120205762025642203-899973462685110120121231367764024


Q ss_pred             ------------------CCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             ------------------45556775204799734661004886799999999750565566226999998539
Q gi|254780598|r  150 ------------------KAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       150 ------------------~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                                        ...+.+.+.++..+|+|++++ ..+|+++.+.|+++..++.+  .++|.+||+|||
T Consensus       129 ~d~~~~~~~~~~~~~~~~~s~~~s~s~tsfAyGAGvQfN-P~~nvaiD~gYEgS~~~d~~--~~gf~vGVGYRF  199 (199)
T pfam06316       129 GDYFRLTDDEGKKHDHLTGSDDARRSHTALAWGAGVQFN-PTENIAVDLAYEASGRGDWR--TDAFIVGTGYKF  199 (199)
T ss_pred             CCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEC-CCCCEEEEEEEEECCCCCCE--ECCEEEEEEECC
T ss_conf             650331255565455544444454443322442027971-57667999877630348705--175899514409


No 6  
>PRK10959 outer membrane protein W; Provisional
Probab=99.64  E-value=5.7e-14  Score=89.55  Aligned_cols=182  Identities=15%  Similarity=0.059  Sum_probs=103.7

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             9443789999999998410000-246654356666655563455444444115421000122333344667777760268
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQ-AADPVRRAHHGGRGVVPTIATNRYVPIRHDFNGPYAGLSALYNGSFGEEAHHNAGGS   79 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~-Aad~~~~~~~~~~~~~~~~~~~~~~~~~~~w~G~y~g~~~g~~~~~~~~~~~~~~~G   79 (205)
                      |||+.++++++++++++...|+ |.|...+.-.....+.  ..           ++.-.+..      ..-..++....+
T Consensus         1 Mkk~~~a~~~~~a~~s~~A~A~~aGd~~vr~g~~~V~P~--~~-----------s~~~~~~~------~~~~v~~~~~~~   61 (212)
T PRK10959          1 MKKLTVAALAVATLLSGSAFAHEAGDFIVRAGAATVRPN--EG-----------SDGVLGSL------GEFSVDNNTQLG   61 (212)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC--CC-----------CCCCCCCC------CCEEECCCCEEE
T ss_conf             937899999999875167788327998999668998347--88-----------88622566------512206885363


Q ss_pred             EEEEEEEECCCEEEEEEEEEEEC---CCCCCCCCCCCCCEEEEEEEEEEEEE---CCCEEEEEEEEEEEEEEEECC---C
Q ss_conf             99854640483799845101321---55566662122321489998975431---276778988544776444313---4
Q gi|254780598|r   80 IFAGYNVEDSCIMYGVEGDVRYT---VPVLADNIHSLHGIGGSLRIRGGYEV---SDSLLLYATVGPDVAQKYETG---K  150 (205)
Q Consensus        80 ~~~GYn~q~~~~V~G~e~d~~~~---~~~~~~~~~~~~~~~~~~~~r~Gy~~---~~~~l~Y~~~G~a~~~~~~~~---~  150 (205)
                      +-..|-+..+   +++|.-....   +.........+.-+...-..-+.|-+   +.++-||+-+|+.++.+-.+.   .
T Consensus        62 lt~~Yf~tdn---i~vEll~~tpf~h~v~~~g~g~vg~~~~lPPtl~~qYhF~~~~~~~rPYVGaGvnYt~F~d~~~~~~  138 (212)
T PRK10959         62 LTFGYMATDN---IGVELLAATPFRHKVGLGGTGDIATVKHLPPTLMAQYYFGDAQSKLRPYVGAGVNYTTFFDNEFNDT  138 (212)
T ss_pred             EEEEEEEECC---EEEEEEEECCCCCEECCCCCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEEEEEEEEEECCCCCCC
T ss_conf             6899997188---3599999648700781467331587996498999997348999845135761067999971324565


Q ss_pred             C------CCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC--------------CCCCCEEEEEEEEEEC
Q ss_conf             5------55677520479973466100488679999999975056--------------5566226999998539
Q gi|254780598|r  151 A------GEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSK--------------VEGFYNTISLGVGMKF  205 (205)
Q Consensus       151 ~------~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~--------------~~~~~~~~~~G~~ykF  205 (205)
                      .      .-+-+..+|+.+-+|+|| +|++||+++++.+|++...              ++.|--.+.+|++|||
T Consensus       139 ~~~~~~~~l~l~~S~G~a~q~G~dy-~l~~~W~~n~dv~y~~i~T~a~~~~~~~~~~~~v~idP~v~~vgvgYrF  212 (212)
T PRK10959        139 GKDAGLSDLSLKDSWGAAGQVGLDY-LINRDWLVNASVWYMDIDTDVKFKLGGAQQKISTRLDPWVFMFSAGYRF  212 (212)
T ss_pred             CCCCCCCCEEECCCEEEEEEEEEEE-EECCCEEEEEEEEEEECCCEEEEECCCCEEEEEEEECCEEEEEEEEEEC
T ss_conf             5567745106627460799987899-9379839999999996234599963884066047708789997759989


No 7  
>pfam02530 Porin_2 Porin subfamily. This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to pfam00267. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of gram negative bacteria.
Probab=99.52  E-value=9.9e-13  Score=83.16  Aligned_cols=78  Identities=19%  Similarity=0.140  Sum_probs=60.5

Q ss_pred             CCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECC-----------------------------------CCCCCCCCC
Q ss_conf             321489998975431276778988544776444313-----------------------------------455567752
Q gi|254780598|r  114 HGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETG-----------------------------------KAGEITPIA  158 (205)
Q Consensus       114 ~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~-----------------------------------~~~~~~~~~  158 (205)
                      ..|.+.+|+|+.+.++|++.++..++|+....+...                                   ......+..
T Consensus       245 ~~~~~Av~~~~~~~~g~g~s~~l~g~Y~~ga~~Y~~~~~~~~~~~~Wav~~~~~~~~t~k~~~~~~~~~~~~~~~~~~d~  324 (378)
T pfam02530       245 DKEEGAVRARLSVKAGDGDTLNIAGGYASGANRYTGDSEYHNWGGNWAVWAGYTYKATDKTAITPGAQWGGAGNVCNPDF  324 (378)
T ss_pred             CCCCEEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECEEEECCCCCCCCCC
T ss_conf             54250448999998679845899999815874223554443467750377656862333089820337502454347775


Q ss_pred             EEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCC
Q ss_conf             0479973466100488679999999975056556
Q gi|254780598|r  159 IGGTAGVGVEVGGLSESLVARLEYRASKYSKVEG  192 (205)
Q Consensus       159 ~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~  192 (205)
                      ..|.+|+.+.| .+.+|+.+++|++|+++++...
T Consensus       325 ~~~~vg~nv~y-tpV~nl~~~~Ev~Yt~~d~k~~  357 (378)
T pfam02530       325 DGWAVGANVDY-TIVDNLTFTAEVRYTDLGQKYF  357 (378)
T ss_pred             CEEEEEEEEEE-EECCCEEEEEEEEEEECCCCCC
T ss_conf             42688887887-8809968978999974687445


No 8  
>pfam07437 YfaZ YfaZ precursor. This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.
Probab=99.42  E-value=1.4e-11  Score=77.21  Aligned_cols=175  Identities=15%  Similarity=0.074  Sum_probs=108.6

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             94437899999999984100002466543566666555634554444441154210001223333446677777602689
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRAHHGGRGVVPTIATNRYVPIRHDFNGPYAGLSALYNGSFGEEAHHNAGGSI   80 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~~~~~~~~~~~~~~~~~~~~~~w~G~y~g~~~g~~~~~~~~~~~~~~~G~   80 (205)
                      |||++++.+++.++++  ++|+|-++..+.-......        ..+-...-+    |......|...+  +++-.+++
T Consensus         1 mkk~~~~~a~~l~~~s--~~A~A~s~~~~~g~~~t~~--------~~~~g~~~~----gl~~~g~w~~sd--~dg~~~~~   64 (180)
T pfam07437         1 MAKFRVASVALLLLVA--LSVNASSFNLGLGNDYTNT--------GLGLGTNTD----GLAVSGNWIYSD--DDGDVAGG   64 (180)
T ss_pred             CCHHHHHHHHHHHHHH--HHCEEEEEECCCCCCEEEE--------EECCCCCCC----CEEEECCEEEEC--CCCCEECC
T ss_conf             9035899999998763--2105788422466413777--------430378887----505421265787--99967324


Q ss_pred             EEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEE
Q ss_conf             98546404837998451013215556666212232148999897543127677898854477644431345556775204
Q gi|254780598|r   81 FAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPIAIG  160 (205)
Q Consensus        81 ~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g  160 (205)
                      -.+++++.+...+.+-+-..+.+.+...     +.+...+.+|+.+++.+++.+|+.+=|+=...        .+..+.-
T Consensus        65 gl~~~~~~Gp~~~~vGgK~~y~~~~~g~-----~G~Ava~GG~~~~~~~~~~sl~Ge~YyaP~~l--------ssGvd~y  131 (180)
T pfam07437        65 GLGMNLPAGPHHATVGAKGSYLWPDEGP-----NGSAVAVGGGLALAIGPSFSLQGEAYYAPSVL--------SSGVDSY  131 (180)
T ss_pred             EEEEECCCCCEEEEEEEEEEEECCCCCC-----CCEEEEECCEEECCCCCCEEEEEEEEECCHHH--------CCCCHHH
T ss_conf             0467405678389820369982766688-----63189862568624588578988789880673--------2562033


Q ss_pred             EEEEEEEEEECCCCCEEEEEEEEEEECCCCCCC-----CEEEEEEEEEEC
Q ss_conf             799734661004886799999999750565566-----226999998539
Q gi|254780598|r  161 GTAGVGVEVGGLSESLVARLEYRASKYSKVEGF-----YNTISLGVGMKF  205 (205)
Q Consensus       161 ~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~-----~~~~~~G~~ykF  205 (205)
                      .-+.+|++| .+.+++++.+.|||+++...|..     .+-+.||++.+|
T Consensus       132 ~ea~~gv~~-~v~~pl~v~aGYRyi~~~~~dg~~d~~ladG~yvG~~~sF  180 (180)
T pfam07437       132 YEANSGVRY-NINRPMALYVGYRYINFEGKDGARDNTFADGAYIGGKFRF  180 (180)
T ss_pred             EEECCCEEE-EECCCCEEEEEEEEEEEECCCCCCCCEECCCCEEEEEECC
T ss_conf             373461699-9737728997579998663679877524237468337509


No 9  
>pfam02462 Opacity Opacity family porin protein. Pathogenic Neisseria spp. possess a repertoire of phase-variable Opacity proteins that mediate various pathogen--host cell interactions. These proteins are integral membrane proteins related to other porins.
Probab=99.34  E-value=1.2e-11  Score=77.58  Aligned_cols=115  Identities=22%  Similarity=0.186  Sum_probs=81.0

Q ss_pred             EEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEE--EECCCEEEEEEEEEEEEEEEECC-----CCCCCC
Q ss_conf             54640483799845101321555666621223214899989754--31276778988544776444313-----455567
Q gi|254780598|r   83 GYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGY--EVSDSLLLYATVGPDVAQKYETG-----KAGEIT  155 (205)
Q Consensus        83 GYn~q~~~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy--~~~~~~l~Y~~~G~a~~~~~~~~-----~~~~~~  155 (205)
                      ||+|-  +|=+  -+||.....-.++....+ .  .++.+-+=|  ..++++-||+-++++..+.+.+.     ...+.+
T Consensus         2 GYdfg--~~R~--A~DY~~y~k~~~~~~~~~-~--~SlglsaiYDFdt~s~~kPYvGarv~~~~~~~~~~~~~~~~~s~S   74 (126)
T pfam02462         2 GYRFG--NLRF--AVDYTRYGKVKANSTDFK-G--YSLGASVIYDFDTQSPVKPYVGARVSTNGFKVTASAELGGSDSFS   74 (126)
T ss_pred             CCCCC--CEEE--EECHHHHCCCCCCCCCEE-E--EEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             61358--7999--820123152137875357-6--763678999715899521426756761222103555358755650


Q ss_pred             CCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC---CCCCEEEEEEEEEEC
Q ss_conf             75204799734661004886799999999750565---566226999998539
Q gi|254780598|r  156 PIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKV---EGFYNTISLGVGMKF  205 (205)
Q Consensus       156 ~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~---~~~~~~~~~G~~ykF  205 (205)
                      +++.||-+.+||.| .|||||++.++|||..+++.   +.+.|..++||-|||
T Consensus        75 ~~~~g~gv~AGVgy-ditpnltLD~GYRY~~~G~le~tr~~theas~GvRY~F  126 (126)
T pfam02462        75 DTRIGLGVLAGVSY-KLTPNVDLDTGYRYNRLGKVTVTNVRSGEASAGVRYKF  126 (126)
T ss_pred             CCEEEEEEEEEEEE-ECCCCEEEECCEEEEECCCCCCCEECCCCEEEEEEEEC
T ss_conf             33599988743688-32787377125288004641343020121368866639


No 10 
>pfam05736 OprF OprF membrane domain. This domain represents the presumed membrane spanning region of the OprF proteins. This region is involved in channel formation and is thought to form an 8-stranded beta-barrel.
Probab=99.25  E-value=2.6e-10  Score=70.78  Aligned_cols=174  Identities=16%  Similarity=0.118  Sum_probs=101.1

Q ss_pred             CH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             94-43789999999998410000246654356666655563455444444115421000122333344667777760268
Q gi|254780598|r    1 MQ-KLFLAVGVSSLALASFCSAQAADPVRRAHHGGRGVVPTIATNRYVPIRHDFNGPYAGLSALYNGSFGEEAHHNAGGS   79 (205)
Q Consensus         1 Mk-k~~la~av~~lal~~~~~A~Aad~~~~~~~~~~~~~~~~~~~~~~~~~~~w~G~y~g~~~g~~~~~~~~~~~~~~~G   79 (205)
                      || |-.|-+++.+|+.+.+-.|.|...-..+                ..+   +.+.|.       .....+..++..+|
T Consensus         1 mklkntlg~aig~lvaa~s~~alAqgqgave----------------~e~---f~g~~~-------fDs~r~~~~g~~~G   54 (184)
T pfam05736         1 MKLKNTLGFAIGSLVAATSFGALAQGQGAVE----------------IEA---FYKKQY-------NDSVRNMKNGDLPG   54 (184)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE----------------EEE---CCCEEE-------CCCCCCCCCCCCCE
T ss_conf             9532015578888888730167765467479----------------842---266475-------26313532489640


Q ss_pred             EEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCE-EEEEEEEEEEEE---CCCEEEEEEEEEEEEEEEECCCCCCCC
Q ss_conf             9985464048379984510132155566662122321-489998975431---276778988544776444313455567
Q gi|254780598|r   80 IFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGI-GGSLRIRGGYEV---SDSLLLYATVGPDVAQKYETGKAGEIT  155 (205)
Q Consensus        80 ~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~~~~~~~-~~~~~~r~Gy~~---~~~~l~Y~~~G~a~~~~~~~~~~~~~~  155 (205)
                      +-+||++..+   +.+|+-++..+...++......+. ....+...-|.|   .+.+-||+.+|.+..+.+.......-.
T Consensus        55 ~~iGY~lTdd---vsl~l~y~~~~~~r~~~~~g~~~i~g~~~rLDalYHF~~pg~~lrPYvs~G~gh~s~~~~~~g~~Gr  131 (184)
T pfam05736        55 GSIGYFLTDD---VELNLSYDETHDTRSTDGTGNQKVGGDLTSLDAQYHFGTPGDGLRPYVSAGFAHQSITNVADGSQGR  131 (184)
T ss_pred             EEEEEECCCC---EEEEEEECCCCCHHCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCEEECCCCCCCCC
T ss_conf             3652571788---3899887342100013576661035634667779973898766337277314652000225687765


Q ss_pred             CCCEEEEEEEEEEEECCCCCEEEEEEEEE-EECCCCCCCCEEEEEEEEEEC
Q ss_conf             75204799734661004886799999999-750565566226999998539
Q gi|254780598|r  156 PIAIGGTAGVGVEVGGLSESLVARLEYRA-SKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       156 ~~~~g~~~G~Gvey~~it~~~~~r~EY~y-~df~~~~~~~~~~~~G~~ykF  205 (205)
                      +..+=..+|+|+.| .|||||.+|+|-|- .++++-+.+ =..++|++|-|
T Consensus       132 d~sT~~N~G~G~Ky-~itdn~~aRa~vra~y~lD~~~~d-~~a~vGl~~~F  180 (184)
T pfam05736       132 DQSTFANIGAGAKY-YFTENFYARAGVEAQYGLDNGDWE-WAALVGLGVNF  180 (184)
T ss_pred             CCCEEEEECCCEEE-EECCCEEEEECHHHHCCCCCCCCC-EEEEEEEEEEC
T ss_conf             64416763452689-960544776132531047788612-00455249960


No 11 
>pfam03922 OmpW OmpW family. This family includes outer membrane protein W (OmpW) proteins from a variety of bacterial species. This protein may form the receptor for S4 colicins in E. coli.
Probab=99.11  E-value=1e-08  Score=62.58  Aligned_cols=130  Identities=14%  Similarity=0.088  Sum_probs=85.0

Q ss_pred             CCCCCEEEEEEEEEEECCCEEEEEEEEEEEC---CCCCC---CCCCCCCCEEEEEEEEEEEEE---CCCEEEEEEEEEEE
Q ss_conf             7776026899854640483799845101321---55566---662122321489998975431---27677898854477
Q gi|254780598|r   72 AHHNAGGSIFAGYNVEDSCIMYGVEGDVRYT---VPVLA---DNIHSLHGIGGSLRIRGGYEV---SDSLLLYATVGPDV  142 (205)
Q Consensus        72 ~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~---~~~~~---~~~~~~~~~~~~~~~r~Gy~~---~~~~l~Y~~~G~a~  142 (205)
                      .++....++-..|-+..+   +++|+-....   +....   .....+.-+..-...-+.|.+   +.++.||+-+|+.+
T Consensus        32 v~~~~~~~l~~~Yf~tdn---ia~eli~g~p~~h~i~~~g~~~~~~lG~v~~lPPtlt~qYhf~~~~~~~rPYVGaGvnY  108 (189)
T pfam03922        32 VGNDTQPGLTFTYFFTDN---VGVELLAATPFSHNIGGSGPGSNGLVGKTKHLPPTLTAQYHFGDASSGFRPYVGAGVNY  108 (189)
T ss_pred             ECCCCEEEEEEEEEEECC---EEEEEEEECCCEEEEECCCCCCCCCEEEEEECCCEEEEEEEECCCCCCEEEEEEEEEEE
T ss_conf             768855857899997188---56999996697579834566678605879964989999993489999650567601689


Q ss_pred             EEEEECCCC-----CCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC--------------CCCCCEEEEEEEEE
Q ss_conf             644431345-----55677520479973466100488679999999975056--------------55662269999985
Q gi|254780598|r  143 AQKYETGKA-----GEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSK--------------VEGFYNTISLGVGM  203 (205)
Q Consensus       143 ~~~~~~~~~-----~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~--------------~~~~~~~~~~G~~y  203 (205)
                      +.+-.+...     .-+-+..+|+.+-+|++| +|+++|+++++.+|+++..              ++.|--.+.+|++|
T Consensus       109 t~f~~~~~~~~~~~~~~~d~s~G~a~q~G~dy-~l~~~w~~n~dv~~~~i~t~at~~~g~~~~~~~v~lDP~v~~~gvgy  187 (189)
T pfam03922       109 TTFFDEKLGSTGATDLKLKDSWGAAGQAGVDY-MVNDDWLVNMDVWYMFIDTTASYKLGGAKLKTKVKLDPWVFSIGLGY  187 (189)
T ss_pred             EEEECCCCCCCCCCEEEECCCEEEEEEEEEEE-EECCCEEEEEEEEEEECCCEEEEECCCCEEEEEEEECCEEEEEEEEE
T ss_conf             99983445888854689706540899998899-96898399999999962456999728850785799588899987698


Q ss_pred             EC
Q ss_conf             39
Q gi|254780598|r  204 KF  205 (205)
Q Consensus       204 kF  205 (205)
                      ||
T Consensus       188 rF  189 (189)
T pfam03922       188 RF  189 (189)
T ss_pred             EC
T ss_conf             79


No 12 
>COG3047 OmpW Outer membrane protein W [Cell envelope biogenesis, outer membrane]
Probab=99.04  E-value=1.8e-08  Score=61.32  Aligned_cols=130  Identities=14%  Similarity=0.104  Sum_probs=83.0

Q ss_pred             CCCCCEEEEEEEEEEECCCEEEEEEEEEEEC--CCCCCC----CCCCCCCEEEEEEEEEEEE---ECCCEEEEEEEEEEE
Q ss_conf             7776026899854640483799845101321--555666----6212232148999897543---127677898854477
Q gi|254780598|r   72 AHHNAGGSIFAGYNVEDSCIMYGVEGDVRYT--VPVLAD----NIHSLHGIGGSLRIRGGYE---VSDSLLLYATVGPDV  142 (205)
Q Consensus        72 ~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~--~~~~~~----~~~~~~~~~~~~~~r~Gy~---~~~~~l~Y~~~G~a~  142 (205)
                      ..++...++-.-|-+..+   +++|.-....  ...+..    ...+..-|..-...-+.|-   -...+-||+-+|+.+
T Consensus        54 v~~~~~pgL~~TY~ftdN---i~vEli~~t~~~h~~g~~~~~~~g~i~~~~~lPpTlt~Qyhf~~~~s~frPYvGaG~nY  130 (213)
T COG3047          54 VSNNTQPGLTFTYFFTDN---IGVELIAATPFAHKIGVGGLGGLGKIGKTKHLPPTLTAQYHFGDASSKFRPYVGAGLNY  130 (213)
T ss_pred             ECCCCCCCEEEEEEEECC---EEEEEEEECCCCEEECCCCCCCCCCCCCEEEECCEEEEEEECCCCCCCCCCCEEECCCE
T ss_conf             736764433689997377---24677861340203055676555311417880868899973168655544214503334


Q ss_pred             EEEEECCCC-----CCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC----------------CCCCCEEEEEEE
Q ss_conf             644431345-----55677520479973466100488679999999975056----------------556622699999
Q gi|254780598|r  143 AQKYETGKA-----GEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSK----------------VEGFYNTISLGV  201 (205)
Q Consensus       143 ~~~~~~~~~-----~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~----------------~~~~~~~~~~G~  201 (205)
                      +.+..+...     .-.-+..+|...-+|++| +++++|.++..-+|.++.+                ++.|-=-+.+|+
T Consensus       131 t~f~~e~~~~~~~~~lkl~ns~G~a~q~G~Dy-~l~~~w~ln~dV~~~~i~t~a~~~~~~g~~~~~~kvkLdPwv~~~Gi  209 (213)
T COG3047         131 TTFFDEKFGSTGLSDLKLKDSWGAAGQAGVDY-MLNDDWLLNMDVKYMFIDTTAKYKAGLGGAKLKSKVKLDPWVFMIGI  209 (213)
T ss_pred             EEEEEECCCCCCCCEEEECCCCCEEEEEEEEE-EECCCEEEEEEEEEEECCCCEEECCCCCCCEEECCEECCCEEEEEEE
T ss_conf             89985014777754045135546116854558-90456188778899961554034246677505410341764999532


Q ss_pred             EEEC
Q ss_conf             8539
Q gi|254780598|r  202 GMKF  205 (205)
Q Consensus       202 ~ykF  205 (205)
                      +|||
T Consensus       210 gyRF  213 (213)
T COG3047         210 GYRF  213 (213)
T ss_pred             EECC
T ss_conf             6619


No 13 
>PRK10716 long-chain fatty acid outer membrane transporter; Provisional
Probab=98.36  E-value=7.1e-05  Score=42.79  Aligned_cols=79  Identities=9%  Similarity=-0.007  Sum_probs=50.2

Q ss_pred             EEECCCEEEEEEEEEEEEEEE----ECCC-----CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECC------C-
Q ss_conf             431276778988544776444----3134-----55567752047997346610048867999999997505------6-
Q gi|254780598|r  126 YEVSDSLLLYATVGPDVAQKY----ETGK-----AGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYS------K-  189 (205)
Q Consensus       126 y~~~~~~l~Y~~~G~a~~~~~----~~~~-----~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~------~-  189 (205)
                      +.++|++.+-+.+-+..+..-    ....     ...+.+++..|.+.+|+|| +++++|.+|+.|-|-+=.      + 
T Consensus       297 ~~~~~~~~l~~d~~wt~WS~~~~l~~~~~~g~~~~~~~~nw~Dtw~~~~G~~Y-~~~~~l~LRaG~aYD~sPv~~~~~~~  375 (437)
T PRK10716        297 NRVAPQWAIHYSLAYTSWSQFQELKATSTNGDTLFQKHEGFKDAYRIALGTTY-YYDDNWTFRTGIAFDDSPVPAQNRSI  375 (437)
T ss_pred             EECCCCEEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEEE-ECCCCCEEEEEEEECCCCCCCCCCCC
T ss_conf             96385569999999965146552334437885132554577410079978999-87998189887787468888886562


Q ss_pred             --CCCCCEEEEEEEEEEC
Q ss_conf             --5566226999998539
Q gi|254780598|r  190 --VEGFYNTISLGVGMKF  205 (205)
Q Consensus       190 --~~~~~~~~~~G~~ykF  205 (205)
                        =|.+.+-+++|++||+
T Consensus       376 ~iPd~dR~~~S~G~~y~~  393 (437)
T PRK10716        376 SIPDQDRFWLSAGTTYAF  393 (437)
T ss_pred             CCCCCCCEEEEEEEEEEC
T ss_conf             076888859981268854


No 14 
>pfam03349 Toluene_X Outer membrane protein transport protein (OMPP1/FadL/TodX). This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.
Probab=98.28  E-value=0.00014  Score=41.22  Aligned_cols=85  Identities=14%  Similarity=0.098  Sum_probs=54.8

Q ss_pred             EEEEEEEEECCCEEEEEEEEEEEEEE-EE---C--------CCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEC
Q ss_conf             99897543127677898854477644-43---1--------345556775204799734661004886799999999750
Q gi|254780598|r  120 LRIRGGYEVSDSLLLYATVGPDVAQK-YE---T--------GKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKY  187 (205)
Q Consensus       120 ~~~r~Gy~~~~~~l~Y~~~G~a~~~~-~~---~--------~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df  187 (205)
                      +..-+.|.++|++.+-+-.-+..+.. +.   .        .....+..++..|.+.+|+|| .++|+|.+|+.|.|.+=
T Consensus       261 ~~~g~~~~~~~~~~l~~d~~~~~WS~~~~l~~~~~~~~~~~~~~~~~~~w~d~~~~~~G~eY-~~~~~l~LRaG~~yd~s  339 (415)
T pfam03349       261 LELGISHQFNDQWAVHASVKRTFWSDFDKLIFVLFVFAKGGTDLSLPQNYRDTTTYALGTDY-QFNDRWTLRAGYAYDQS  339 (415)
T ss_pred             EEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEE-ECCCCEEEEEEEEECCC
T ss_conf             99999998489889999999987300001022344556776453467684150089878999-85998699974765467


Q ss_pred             C--C-------CCCCCEEEEEEEEEEC
Q ss_conf             5--6-------5566226999998539
Q gi|254780598|r  188 S--K-------VEGFYNTISLGVGMKF  205 (205)
Q Consensus       188 ~--~-------~~~~~~~~~~G~~ykF  205 (205)
                      .  +       -+.+.+.+++|++|++
T Consensus       340 pv~~~~~~~~~Pd~dr~~~s~G~~y~~  366 (415)
T pfam03349       340 ATPAESRSARIPDTDRTWLSLGATYAF  366 (415)
T ss_pred             CCCCCCCCEECCCCCCEEEEEEEEEEC
T ss_conf             878776360045778669994058985


No 15 
>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]
Probab=98.23  E-value=2.6e-05  Score=45.08  Aligned_cols=88  Identities=14%  Similarity=0.001  Sum_probs=59.5

Q ss_pred             CEEEEEEEEEEEEECCCEEEEEEEEEEEEE----EEECCC-----CCCCCC-CCEEEEEEEEEEEECCCCCEEEEEEEEE
Q ss_conf             214899989754312767789885447764----443134-----555677-5204799734661004886799999999
Q gi|254780598|r  115 GIGGSLRIRGGYEVSDSLLLYATVGPDVAQ----KYETGK-----AGEITP-IAIGGTAGVGVEVGGLSESLVARLEYRA  184 (205)
Q Consensus       115 ~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~----~~~~~~-----~~~~~~-~~~g~~~G~Gvey~~it~~~~~r~EY~y  184 (205)
                      ....++..  ...+.|++++++.+=+..+.    ++....     .....+ .+.+|++.+|++| .++|.|++|+.+.|
T Consensus       285 P~~~el~~--~~~~~d~w~~~~s~~wT~WS~f~~l~~~~~~~~~~~~~~~~~yrD~wt~a~G~~Y-~~nd~~tlragiay  361 (440)
T COG2067         285 PASAELSG--QHKVADQWAIHGSVKWTDWSSFDKLDFVFTFGKTLFAKTEDGYRDTWTVALGTTY-KFNDQWTLRAGIAY  361 (440)
T ss_pred             CCEEEEEE--EECCCCCEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECEE-ECCCCCEEEEEEEE
T ss_conf             85799722--6403887079988998651677448889768875224653341043179400106-73866337500334


Q ss_pred             EEC----C--CC---CCCCEEEEEEEEEEC
Q ss_conf             750----5--65---566226999998539
Q gi|254780598|r  185 SKY----S--KV---EGFYNTISLGVGMKF  205 (205)
Q Consensus       185 ~df----~--~~---~~~~~~~~~G~~ykF  205 (205)
                      .+=    .  +.   +.|...+++|+.|+|
T Consensus       362 D~s~s~~~~~~~~iPd~Dr~~~s~G~~Y~~  391 (440)
T COG2067         362 DQSPSPAQNRSISIPDTDRWWLSLGTTYKF  391 (440)
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEECCCEEEC
T ss_conf             578885445543247877579966647725


No 16 
>PRK10716 long-chain fatty acid outer membrane transporter; Provisional
Probab=98.04  E-value=0.00026  Score=39.93  Aligned_cols=66  Identities=17%  Similarity=0.143  Sum_probs=31.7

Q ss_pred             EEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCC---------------------------CCCCCCCEEEEEEEEEEEE
Q ss_conf             8999897543127677898854477644431345---------------------------5567752047997346610
Q gi|254780598|r  118 GSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKA---------------------------GEITPIAIGGTAGVGVEVG  170 (205)
Q Consensus       118 ~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~---------------------------~~~~~~~~g~~~G~Gvey~  170 (205)
                      ..+.+-+.|.++|++.+=+-.-+.+.+.+.+...                           ...+...+|+-+-+|+-| 
T Consensus       153 i~inPsvAykvnd~lSvG~G~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gd~~g~G~nlG~~~-  231 (437)
T PRK10716        153 MNLNLSGAYRLNNAWSFGLGFDAVYARAKIERFAGDLGQLVAGQGQALAATAGGIPSNTKIAHLNGNQWGFGWNAGILY-  231 (437)
T ss_pred             EEEEEEEEEECCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEEEEEE-
T ss_conf             9995677786078789987069999888844213442321234556654445677876530366145357889999999-


Q ss_pred             CCCCCEEEEEEEEE
Q ss_conf             04886799999999
Q gi|254780598|r  171 GLSESLVARLEYRA  184 (205)
Q Consensus       171 ~it~~~~~r~EY~y  184 (205)
                      .++|++.+.+-||-
T Consensus       232 ~~~~~~~~GlsYRS  245 (437)
T PRK10716        232 ELDKNNRYALTYRS  245 (437)
T ss_pred             EECCCCEEEEEEEC
T ss_conf             81789789999852


No 17 
>pfam03797 Autotransporter Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C terminus of the proteins it occurs in. The N terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.
Probab=97.86  E-value=0.0011  Score=36.68  Aligned_cols=130  Identities=23%  Similarity=0.243  Sum_probs=73.9

Q ss_pred             CCCCCCCCCCCCCCCCC--------------CCCCCCEEEEEEEEEEEC-CCEEEEEEEEEEECCCCCCCC---------
Q ss_conf             21000122333344667--------------777760268998546404-837998451013215556666---------
Q gi|254780598|r   54 NGPYAGLSALYNGSFGE--------------EAHHNAGGSIFAGYNVED-SCIMYGVEGDVRYTVPVLADN---------  109 (205)
Q Consensus        54 ~G~y~g~~~g~~~~~~~--------------~~~~~~~~G~~~GYn~q~-~~~V~G~e~d~~~~~~~~~~~---------  109 (205)
                      .++|+-..++++....+              .....+...+.+||+|.. +++.+-..+.+.|.....+.-         
T Consensus        85 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~i~P~~~l~y~~~~~~~f~E~g~~~~~  164 (265)
T pfam03797        85 GGLYLDGVLAYGRFDNDVKRLGTSTGTAKGDYDSHGLGASLEAGYRFKLSGNLTLTPFAGLQYVYLRQDGFTESGARSFA  164 (265)
T ss_pred             CCCEEEEEEEEEEEECEEEEECCCCCCCEEEEEEEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCCEEEECCCCCC
T ss_conf             98369767888997150487306787302228024999999987623326975996999999999876876670998435


Q ss_pred             CCC----CCCEEEEEEEEEEEEECC-CEEEEEEEEEEEEEEEECC---------------CCCCCCCCCEEEEEEEEEEE
Q ss_conf             212----232148999897543127-6778988544776444313---------------45556775204799734661
Q gi|254780598|r  110 IHS----LHGIGGSLRIRGGYEVSD-SLLLYATVGPDVAQKYETG---------------KAGEITPIAIGGTAGVGVEV  169 (205)
Q Consensus       110 ~~~----~~~~~~~~~~r~Gy~~~~-~~l~Y~~~G~a~~~~~~~~---------------~~~~~~~~~~g~~~G~Gvey  169 (205)
                      ...    .......+..|+.+.+.+ ++-+|..+++.+.......               .....+..+....+++|+++
T Consensus       165 l~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  244 (265)
T pfam03797       165 LSVDSQSLTNLSGPLGLRLEYRFSLRSLKPYATLGWAYEFDDYRQVPTNGATLLASGGSWVTSGTPLARNAAELGAGVEL  244 (265)
T ss_pred             EEEECCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEEEECCCCCCCEEEEEEEECCCCCEEECCCCCCCEEEEEEEEEEE
T ss_conf             17844666589999999999985287364899999999977887550399997268984299675666549999988999


Q ss_pred             ECCCCCEEEEEEEEE
Q ss_conf             004886799999999
Q gi|254780598|r  170 GGLSESLVARLEYRA  184 (205)
Q Consensus       170 ~~it~~~~~r~EY~y  184 (205)
                       .+++++++.++|+.
T Consensus       245 -~~~~~~~l~~~~~~  258 (265)
T pfam03797       245 -ALGKNLSLFLNYSG  258 (265)
T ss_pred             -EECCCEEEEEEEEE
T ss_conf             -98998699999970


No 18 
>pfam03349 Toluene_X Outer membrane protein transport protein (OMPP1/FadL/TodX). This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.
Probab=97.76  E-value=0.0016  Score=35.84  Aligned_cols=85  Identities=14%  Similarity=0.152  Sum_probs=46.4

Q ss_pred             EEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCC-CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC-----
Q ss_conf             899989754312767789885447764443134555-67752047997346610048867999999997505655-----
Q gi|254780598|r  118 GSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGE-ITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVE-----  191 (205)
Q Consensus       118 ~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~-~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~-----  191 (205)
                      +.++.-+.|.++|++  -.++|+++-+.-....... .-....-+.+.+|+.| .+++++++.+-|.|..+.+.+     
T Consensus       314 ~~~~~G~eY~~~~~l--~LRaG~~yd~spv~~~~~~~~~Pd~dr~~~s~G~~y-~~~~~~~~d~ay~y~~~~~~~~~~~~  390 (415)
T pfam03349       314 TTYALGTDYQFNDRW--TLRAGYAYDQSATPAESRSARIPDTDRTWLSLGATY-AFTKDLTIDAGFSYLFGKKVSIKENN  390 (415)
T ss_pred             EEEEEEEEEECCCCE--EEEEEEEECCCCCCCCCCCEECCCCCCEEEEEEEEE-ECCCCCEEEEEEEEEECCCCCEEECC
T ss_conf             089878999859986--999747654678787763600457786699940589-85999589999999960655310016


Q ss_pred             -----------CCCEEEEEEEEEEC
Q ss_conf             -----------66226999998539
Q gi|254780598|r  192 -----------GFYNTISLGVGMKF  205 (205)
Q Consensus       192 -----------~~~~~~~~G~~ykF  205 (205)
                                 .+.|-+.++++|||
T Consensus       391 ~~~~~~~g~~~~~~~~~~~~~~y~F  415 (415)
T pfam03349       391 VTNGTLPGTSSGSAHLFALSYNYRF  415 (415)
T ss_pred             CCCCEEEEEEEEEEEEEEEEEEEEC
T ss_conf             7786078999748999999887679


No 19 
>pfam10082 DUF2320 Uncharacterized protein conserved in bacteria (DUF2320). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=97.63  E-value=0.0026  Score=34.75  Aligned_cols=48  Identities=17%  Similarity=0.063  Sum_probs=36.2

Q ss_pred             CCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC----CCCCCEEEEEEEEEEC
Q ss_conf             520479973466100488679999999975056----5566226999998539
Q gi|254780598|r  157 IAIGGTAGVGVEVGGLSESLVARLEYRASKYSK----VEGFYNTISLGVGMKF  205 (205)
Q Consensus       157 ~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~----~~~~~~~~~~G~~ykF  205 (205)
                      ....+.+++|+.| .++++|.+.+.|+|.+...    .+-+.|.|.|||..|+
T Consensus       329 ~D~~~~~~~~l~Y-~~~r~l~l~~~y~~~~~~S~~~~~~y~~n~v~l~l~~~~  380 (380)
T pfam10082       329 KDETYSAEAGLTY-KLNRWLDLTAGVRYEDLDSNIPGRSYDANVVGLGLTLQR  380 (380)
T ss_pred             CCCEEEEEEEEEE-EEECCEEEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEC
T ss_conf             0133999999999-841779999999999703788878625059999999979


No 20 
>pfam06629 MipA MltA-interacting protein MipA. This family consists of several bacterial MltA-interacting protein (MipA) like sequences. As well as interacting with the membrane-bound lytic transglycosylase MltA, MipA is known to bind to PBP1B, a bifunctional murein transglycosylase/transpeptidase. MipA is considered to be a structural protein mediating the assembly of MltA to PBP1B into a complex.
Probab=97.61  E-value=0.0028  Score=34.60  Aligned_cols=117  Identities=15%  Similarity=0.145  Sum_probs=70.4

Q ss_pred             EEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCC------
Q ss_conf             68998546404837998451013215556666212232148999897543127677898854477644431345------
Q gi|254780598|r   78 GSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKA------  151 (205)
Q Consensus        78 ~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~------  151 (205)
                      .|+..  +++.+.+.+.++...+-.+        ....+...++...-+++++++.+-..+++.+.+.+.....      
T Consensus        87 ~G~~~--~~~~~~~~~~~~~~~dv~~--------~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~y~~yyyGV~~~  156 (226)
T pfam06629        87 GGLKA--AYDTGWGTVRAELEQDISN--------GSRGFVADIGLAATYDLGDRLSLSPSLGLSYASRKYNDYYFGVSAA  156 (226)
T ss_pred             EEEEE--EEECCCEEEEEEEEEECCC--------CCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCHHHHHHHHCCCHH
T ss_conf             17899--9994888999999993246--------7388999999999996399779999789998677675655377978


Q ss_pred             -------CC-CCCCC-EEEEEEEEEEEECCCCCEEEEEEEEEEECCCC--------CCCCEEEEEEEEEEC
Q ss_conf             -------55-67752-04799734661004886799999999750565--------566226999998539
Q gi|254780598|r  152 -------GE-ITPIA-IGGTAGVGVEVGGLSESLVARLEYRASKYSKV--------EGFYNTISLGVGMKF  205 (205)
Q Consensus       152 -------~~-~~~~~-~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~--------~~~~~~~~~G~~ykF  205 (205)
                             .. ..+.. ..+.+++-+.| .|++||.+.+.-+|+.+.+.        +-..-++.+|+.|+|
T Consensus       157 ea~~s~~~~Y~a~~g~~~~~~~~~~~y-~l~~~w~~~~~~~~~~L~~~~~dSPiv~~~~~~~~~~g~~Y~F  226 (226)
T pfam06629       157 ESARSGLAQYNAGAGLWSAGLGLSATY-MLTDHWSALGSASYTRLSGDAADSPIVERRGQPSAGLGVAYRF  226 (226)
T ss_pred             HHHHCCCCCCCCCCCEEEEEEEEEEEE-EECCCEEEEEEEEEEECCCCHHCCCCEEECCCEEEEEEEEEEC
T ss_conf             961237864057877078999999999-9669999999999998488211499588678789999999989


No 21 
>pfam00267 Porin_1 Gram-negative porin.
Probab=97.60  E-value=0.0029  Score=34.55  Aligned_cols=43  Identities=16%  Similarity=0.342  Sum_probs=35.5

Q ss_pred             EEEEEEEEECCCCCEEEEEEEEEEECCCCCC------CCEEEEEEEEEEC
Q ss_conf             9973466100488679999999975056556------6226999998539
Q gi|254780598|r  162 TAGVGVEVGGLSESLVARLEYRASKYSKVEG------FYNTISLGVGMKF  205 (205)
Q Consensus       162 ~~G~Gvey~~it~~~~~r~EY~y~df~~~~~------~~~~~~~G~~ykF  205 (205)
                      .+-+|+|| .++++..+-+||++....+.+.      ..|.++|||-|+|
T Consensus       286 q~~lg~dY-~fSKrt~~Y~~Y~~~~~d~~~~~~~~~~~dd~~~vGlRY~F  334 (334)
T pfam00267       286 YVDVGATY-YFNKNMSAYVDYKINLLDKGDDFAAGINTDDAVAVGLVYQF  334 (334)
T ss_pred             EEEEEEEE-EECCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf             99999899-96588049999987625666544467776888999808819


No 22 
>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]
Probab=97.53  E-value=0.0037  Score=33.97  Aligned_cols=84  Identities=18%  Similarity=0.170  Sum_probs=43.5

Q ss_pred             EEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCC--CCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC-----
Q ss_conf             8999897543127677898854477644431345--556775204799734661004886799999999750565-----
Q gi|254780598|r  118 GSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKA--GEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKV-----  190 (205)
Q Consensus       118 ~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~--~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~-----  190 (205)
                      +++..-.+|.++|++  -.++|+++-+.-.....  ... .....|.+++|+-| .+|+++.+++-|-|....+.     
T Consensus       339 wt~a~G~~Y~~nd~~--tlragiayD~s~s~~~~~~~~i-Pd~Dr~~~s~G~~Y-~~t~n~~vd~g~ay~~~~~~s~~~~  414 (440)
T COG2067         339 WTVALGTTYKFNDQW--TLRAGIAYDQSPSPAQNRSISI-PDTDRWWLSLGTTY-KFTKNLEVDAGYAYLKGKSVSINEV  414 (440)
T ss_pred             CEEEEECEEECCCCC--EEEEEEEECCCCCCCCCCCCCC-CCCCCEEEECCCEE-ECCCCEEEEEEEEEEEECCCCCCCC
T ss_conf             179400106738663--3750033457888544554324-78775799666477-2599838998889998414421024


Q ss_pred             -----------CCCCEEEEEEEEEEC
Q ss_conf             -----------566226999998539
Q gi|254780598|r  191 -----------EGFYNTISLGVGMKF  205 (205)
Q Consensus       191 -----------~~~~~~~~~G~~ykF  205 (205)
                                 +...+-+.+.++|||
T Consensus       415 ~~~g~~~~~~~~~~a~~~~ls~~ykF  440 (440)
T COG2067         415 RGAGVTLSGFSKGSAHLFGLSLNYKF  440 (440)
T ss_pred             CCCCCCCCCCCCEEEEEEEEEEEEEC
T ss_conf             56773002311117999998877619


No 23 
>cd00342 gram_neg_porins Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane.  Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are  found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.
Probab=97.42  E-value=0.0052  Score=33.21  Aligned_cols=24  Identities=25%  Similarity=0.282  Sum_probs=10.8

Q ss_pred             EEEEEEEECCCCCEEEEEEEEEEEC
Q ss_conf             9734661004886799999999750
Q gi|254780598|r  163 AGVGVEVGGLSESLVARLEYRASKY  187 (205)
Q Consensus       163 ~G~Gvey~~it~~~~~r~EY~y~df  187 (205)
                      +.+|++| .|+++..+-+||.|.+-
T Consensus       275 ~~lG~~Y-~lSKrT~lY~~~~~~~n  298 (329)
T cd00342         275 VALGADY-ALSKRTDLYAEYGYQKN  298 (329)
T ss_pred             EEEEEEE-EECCCHHHHHHHHHEEC
T ss_conf             9999999-71554898665054110


No 24 
>COG3203 OmpC Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]
Probab=97.33  E-value=0.0068  Score=32.62  Aligned_cols=49  Identities=14%  Similarity=0.211  Sum_probs=39.5

Q ss_pred             CCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC--------CCCEEEEEEEEEEC
Q ss_conf             752047997346610048867999999997505655--------66226999998539
Q gi|254780598|r  156 PIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVE--------GFYNTISLGVGMKF  205 (205)
Q Consensus       156 ~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~--------~~~~~~~~G~~ykF  205 (205)
                      +......+-+|++| .+++|+++.+||.|.+..+.+        ...+.+.|||-|+|
T Consensus       298 ~~~~~~~~~~ga~Y-~fsKrt~~Yv~y~~~~~~~~~~~~~~~~~~~~~~v~VGlr~~F  354 (354)
T COG3203         298 DKDLVKYVDVGATY-YFSKNTSTYVDYGINLLDSDDNATVPGGGNTDNGVAVGLRYQF  354 (354)
T ss_pred             CCCCCEEEEEEEEE-EEECCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf             88760599950179-9804724899988874156675304566654313899879869


No 25 
>pfam11854 DUF3374 Protein of unknown function (DUF3374). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 665 to 712 amino acids in length.
Probab=97.26  E-value=0.0081  Score=32.23  Aligned_cols=42  Identities=21%  Similarity=0.312  Sum_probs=29.9

Q ss_pred             EEEEEEEEECCCCCEEEEEEEEEEECCCC---------------------CCCCEEEEEEEEEEC
Q ss_conf             99734661004886799999999750565---------------------566226999998539
Q gi|254780598|r  162 TAGVGVEVGGLSESLVARLEYRASKYSKV---------------------EGFYNTISLGVGMKF  205 (205)
Q Consensus       162 ~~G~Gvey~~it~~~~~r~EY~y~df~~~---------------------~~~~~~~~~G~~ykF  205 (205)
                      ++.+|++|  ..++|.+.+.|.-+.|.+.                     |.+.|++++--.|++
T Consensus       221 ~l~agv~~--~Gd~W~~~l~Y~gS~f~Nd~~~L~~~~~~~~~~~~~a~~PDN~ahqlslsG~y~l  283 (675)
T pfam11854       221 TLKAGVSL--SGDNWLADLSYNGSFFRNDISALSWDNAFNPYGGQLALAPDNQAHQLSLSGQYNL  283 (675)
T ss_pred             EEECCEEE--ECCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEEEEEC
T ss_conf             47204089--4565078667745676557430103777655445305599863436888778703


No 26 
>cd00342 gram_neg_porins Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane.  Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are  found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.
Probab=97.02  E-value=0.015  Score=30.90  Aligned_cols=141  Identities=16%  Similarity=0.132  Sum_probs=69.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCC-CCCCCCCCCEEEEEEEEEEEEECC
Q ss_conf             5421000122333344667777760268998546404837998451013215556-666212232148999897543127
Q gi|254780598|r   52 DFNGPYAGLSALYNGSFGEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVL-ADNIHSLHGIGGSLRIRGGYEVSD  130 (205)
Q Consensus        52 ~w~G~y~g~~~g~~~~~~~~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~-~~~~~~~~~~~~~~~~r~Gy~~~~  130 (205)
                      .|.|+.++.+.+....... ...+...++-+-|...  .+-+++--+-....... .........  -..++-+.|.+++
T Consensus       139 ~~~Gf~~~a~y~~g~~~~~-~~~~~~~~~~~~Y~~g--~~~~~~~y~~~~~~~~~~~~~~~~~~~--~~~~~ga~Y~~g~  213 (329)
T cd00342         139 FFGGLTFGAMYAFGNQAGS-TSNGRGYGAGLSYENG--PLSLGAAYDQQRNGGGAAGGAAGATSQ--RAYGAGASYDFGG  213 (329)
T ss_pred             CCCCEEEEEEEECCCCCCC-CCCCCEEEEEEEEECC--CEEEEEEEEEEECCCCCCCCCCCCCCE--EEEEEEEEEEECC
T ss_conf             6577899999953667787-7778579999999529--999999999850676444566776514--8999999999689


Q ss_pred             CEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC---CCCCEEEEEEEEEEC
Q ss_conf             677898854477644431345556775204799734661004886799999999750565---566226999998539
Q gi|254780598|r  131 SLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKV---EGFYNTISLGVGMKF  205 (205)
Q Consensus       131 ~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~---~~~~~~~~~G~~ykF  205 (205)
                       +  +..+.|...  +.+......+.....|  -+|+.| .+++.+.+++.|.+.+-.+.   +.+.+.+.+|+.|+|
T Consensus       214 -~--~l~~~Y~~~--~~~~~~~~~~~~~~~~--~~ga~y-~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~lG~~Y~l  283 (329)
T cd00342         214 -L--KLGAGYTNT--RNDNGGGGGSAKFNGY--ELGATY-QLTPALRLGAAYYYTKDRNDGGGDGKANQVALGADYAL  283 (329)
T ss_pred             -E--EEEEEEEEE--ECCCCCCCCCEEEEEE--EEEEEE-ECCCCEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEE
T ss_conf             -9--999999998--8357777875026899--999999-80787389999999944567688897189999999971


No 27 
>TIGR03509 OMP_MtrB_PioB decaheme-associated outer membrane protein, MtrB/PioB family. Members of this protein family are integral proteins of the bacterial outer membrane, associated with multiheme c-type cytochromes involved in electron transfer. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decaheme cytochrome MtrA and large, surface-exposed decaheme cytochrome MtrC.
Probab=96.96  E-value=0.017  Score=30.63  Aligned_cols=67  Identities=22%  Similarity=0.237  Sum_probs=36.8

Q ss_pred             EEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCC-CCC-----CCEEEEEEEEEEEECC-CCCEEEEEEEEEE
Q ss_conf             99989754312767789885447764443134555-677-----5204799734661004-8867999999997
Q gi|254780598|r  119 SLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGE-ITP-----IAIGGTAGVGVEVGGL-SESLVARLEYRAS  185 (205)
Q Consensus       119 ~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~-~~~-----~~~g~~~G~Gvey~~i-t~~~~~r~EY~y~  185 (205)
                      ....-+.|.++|.+.+|+-.+.-+.+.+-.+.... .++     ..---++|+|++|..| .++|++..+|.|+
T Consensus       486 ~ydl~~sy~~~~~ls~~Af~~~q~~ds~q~gs~~~s~~~W~~~~~D~~~~iG~G~~y~~l~d~kL~Lg~dysys  559 (649)
T TIGR03509       486 GYDLDASYTFTDGLSLHAFYNQQWIDSNQAGSATYSTPDWTSDTTDSVTTIGAGLTYEGLLDLKLSLGGDYSYS  559 (649)
T ss_pred             EEEEEEEEEECCCEEEEEEEEEEEEHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCEEEECCEEEE
T ss_conf             16555889967981899988888753123566676754433544301468975147723666664874215650


No 28 
>COG3203 OmpC Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]
Probab=96.91  E-value=0.019  Score=30.39  Aligned_cols=28  Identities=29%  Similarity=0.362  Sum_probs=16.7

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             944378999999999841000024665435
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRA   30 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~   30 (205)
                      |||.++++++++  ++++.++.|+.+-...
T Consensus         1 ~~~~~~a~~~~a--~~aA~a~saatlYg~~   28 (354)
T COG3203           1 MKRKILALAVPA--LLAAGAANAAELYGKD   28 (354)
T ss_pred             CCHHHHHHHHHH--HHHHHHHHEEEEECCC
T ss_conf             905689999987--6765322058995314


No 29 
>pfam05420 BCSC_C Cellulose synthase operon protein C C-terminus (BCSC_C). This family contains the C-terminal regions of several bacterial cellulose synthase operon C (BCSC) proteins. BCSC is involved in cellulose synthesis although the exact function of this protein is unknown.
Probab=96.77  E-value=0.024  Score=29.79  Aligned_cols=50  Identities=14%  Similarity=0.034  Sum_probs=38.0

Q ss_pred             CCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             56775204799734661004886799999999750565566226999998539
Q gi|254780598|r  153 EITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       153 ~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      ..+.+..++++.+.+|| +|+++|.+.++-.+..+++=.  .+...+=+.|-|
T Consensus       287 g~S~~G~~y~l~a~~Ey-rls~~~~lG~~~~~~~a~dY~--p~~~~lYlRY~f  336 (339)
T pfam05420       287 GDSGSGLGYSLRAAVEY-RLSPRWFLGGGLDIQRAGDYA--PSSALLYLRYAF  336 (339)
T ss_pred             CCCCCCEEEEEEEEEEE-EECCCEEEEEEEECCCCCCCC--CCCEEEEEEEEC
T ss_conf             88888555788899999-946988998778002157888--340899999960


No 30 
>pfam03797 Autotransporter Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C terminus of the proteins it occurs in. The N terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.
Probab=96.68  E-value=0.029  Score=29.42  Aligned_cols=111  Identities=14%  Similarity=0.152  Sum_probs=52.5

Q ss_pred             CCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCC-------CCCCCCCEEEEEEEEEEEEEC--CCEE--EEEEEEEE
Q ss_conf             776026899854640483799845101321555666-------621223214899989754312--7677--89885447
Q gi|254780598|r   73 HHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLAD-------NIHSLHGIGGSLRIRGGYEVS--DSLL--LYATVGPD  141 (205)
Q Consensus        73 ~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~-------~~~~~~~~~~~~~~r~Gy~~~--~~~l--~Y~~~G~a  141 (205)
                      .+....++++.|+.+. +|.+-..+.+.+.+.+...       ....-..+..++.+++||.+.  +++.  ||+.+-+.
T Consensus        70 ~~~~~~g~y~~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~i~P~~~l~y~  148 (265)
T pfam03797        70 SDSYGAGLYAQWNFDG-GLYLDGVLAYGRFDNDVKRLGTSTGTAKGDYDSHGLGASLEAGYRFKLSGNLTLTPFAGLQYV  148 (265)
T ss_pred             EEEEEEEEEEEEECCC-CCEEEEEEEEEEEECEEEEECCCCCCCEEEEEEEEEEEEEEEEECCCCCCCEEEEEEEEEEEE
T ss_conf             6707999999998489-836976788899715048730678730222802499999998762332697599699999999


Q ss_pred             EEEEEE---CC------CCCCCCCCCEEEEEEEEEEEECCCC---CEEEEEEEEEE
Q ss_conf             764443---13------4555677520479973466100488---67999999997
Q gi|254780598|r  142 VAQKYE---TG------KAGEITPIAIGGTAGVGVEVGGLSE---SLVARLEYRAS  185 (205)
Q Consensus       142 ~~~~~~---~~------~~~~~~~~~~g~~~G~Gvey~~it~---~~~~r~EY~y~  185 (205)
                      +.+.+.   ++      .....+....-..+|+-+++ .+.+   ++.+++.+.|.
T Consensus       149 ~~~~~~f~E~g~~~~~l~~~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~~~~~~  203 (265)
T pfam03797       149 YLRQDGFTESGARSFALSVDSQSLTNLSGPLGLRLEY-RFSLRSLKPYATLGWAYE  203 (265)
T ss_pred             EEECCCEEEECCCCCCEEEECCCCCEEEEEEEEEEEE-EECCCEEEEEEEEEEEEE
T ss_conf             9876876670998435178446665899999999999-852873648999999999


No 31 
>pfam05736 OprF OprF membrane domain. This domain represents the presumed membrane spanning region of the OprF proteins. This region is involved in channel formation and is thought to form an 8-stranded beta-barrel.
Probab=96.59  E-value=0.004  Score=33.81  Aligned_cols=86  Identities=13%  Similarity=0.052  Sum_probs=42.6

Q ss_pred             CCCEEEEEEEEEE-ECC----CEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEEC
Q ss_conf             7602689985464-048----37998451013215556666212232148999897543127677898854477644431
Q gi|254780598|r   74 HNAGGSIFAGYNV-EDS----CIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYET  148 (205)
Q Consensus        74 ~~~~~G~~~GYn~-q~~----~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~  148 (205)
                      ++....|-+=|+| +.+    ..|-+.-+..+..+.... .....+..+..+.+-+.|-++|+  +|+++++....    
T Consensus        89 ~g~~~rLDalYHF~~pg~~lrPYvs~G~gh~s~~~~~~g-~~Grd~sT~~N~G~G~Ky~itdn--~~aRa~vra~y----  161 (184)
T pfam05736        89 GGDLTSLDAQYHFGTPGDGLRPYVSAGFAHQSITNVADG-SQGRDQSTFANIGAGAKYYFTEN--FYARAGVEAQY----  161 (184)
T ss_pred             CCCEEEEEEEEECCCCCCCCCEEEEECCCCCEEECCCCC-CCCCCCCEEEEECCCEEEEECCC--EEEEECHHHHC----
T ss_conf             563466777997389876633727731465200022568-77656441676345268996054--47761325310----


Q ss_pred             CCCCCCCCCCEEEEEEEEEE
Q ss_conf             34555677520479973466
Q gi|254780598|r  149 GKAGEITPIAIGGTAGVGVE  168 (205)
Q Consensus       149 ~~~~~~~~~~~g~~~G~Gve  168 (205)
                       . -+.+++.+.+++|+++-
T Consensus       162 -~-lD~~~~d~~a~vGl~~~  179 (184)
T pfam05736       162 -G-LDNGDWEWAALVGLGVN  179 (184)
T ss_pred             -C-CCCCCCCEEEEEEEEEE
T ss_conf             -4-77886120045524996


No 32 
>PRK10554 outer membrane porin protein C; Provisional
Probab=96.58  E-value=0.034  Score=29.05  Aligned_cols=43  Identities=14%  Similarity=0.326  Sum_probs=33.6

Q ss_pred             EEEEEEEEECCCCCEEEEEEEEEEECCCCC-------CCCEEEEEEEEEEC
Q ss_conf             997346610048867999999997505655-------66226999998539
Q gi|254780598|r  162 TAGVGVEVGGLSESLVARLEYRASKYSKVE-------GFYNTISLGVGMKF  205 (205)
Q Consensus       162 ~~G~Gvey~~it~~~~~r~EY~y~df~~~~-------~~~~~~~~G~~ykF  205 (205)
                      .+-+|.+| .+++|+.+-+||+.--+.+.+       ..-|.+.||+.|+|
T Consensus       324 ~~~iga~Y-~FnkN~~~y~~Yk~NllD~~~~~~~~~~~~DD~~alGlrY~F  373 (373)
T PRK10554        324 YVDVGATY-YFNKNMSTYVDYKINLLDDNDFTRDAGINTDDIVALGLVYQF  373 (373)
T ss_pred             EEEEEEEE-EECCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf             38976799-977872168888751367653100036776776999628819


No 33 
>TIGR03016 pepcterm_hypo_1 uncharacterized protein, PEP-CTERM system associated. Members of this protein family are found predominantly in exopolysaccharide biosynthesis operons marked by the presence of the EpsH-family putative exosortase and presence in the genome of the PEP-CTERM protein sorting signal. Members of this family may be distantly related to the EpsL family modeled in TIGR03014.
Probab=96.55  E-value=0.035  Score=28.94  Aligned_cols=80  Identities=16%  Similarity=0.111  Sum_probs=53.1

Q ss_pred             EEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC----CCCCCE
Q ss_conf             9989754312767789885447764443134555677520479973466100488679999999975056----556622
Q gi|254780598|r  120 LRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSK----VEGFYN  195 (205)
Q Consensus       120 ~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~----~~~~~~  195 (205)
                      +.++..+.+.+++.+-+.+++...+.+  ...   +....-+.+.+|+.| .|++++.+.+-|+|.+...    .+-+.|
T Consensus       348 ~~~~~~~~L~~rl~~~~~~~~~~~~~~--~~~---~~~d~~~~~~~gl~y-~l~~~~~~~l~Yry~~rdS~~~~~dy~~N  421 (431)
T TIGR03016       348 GSVLLTHRLSPRLTANLGLTYERNEGS--GTN---DQETDRTSVSAGLSY-QLGENTTGSLTYRYQERDSNFEATDYTEN  421 (431)
T ss_pred             EEEEEEEEECCCCEEEEEEEEEEEECC--CCC---CCCEEEEEEEEEEEE-EECCCEEEEEEEEEEECCCCCCCCCHHHH
T ss_conf             038999996513121489999972437--777---650469999998999-96386599999999970478766664551


Q ss_pred             EEEEEEEEEC
Q ss_conf             6999998539
Q gi|254780598|r  196 TISLGVGMKF  205 (205)
Q Consensus       196 ~~~~G~~ykF  205 (205)
                      .|.+.+.++|
T Consensus       422 ~v~~~l~~~F  431 (431)
T TIGR03016       422 RLMAEVTMTF  431 (431)
T ss_pred             EEEEEEEEEC
T ss_conf             2157787409


No 34 
>pfam10082 DUF2320 Uncharacterized protein conserved in bacteria (DUF2320). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=96.54  E-value=0.036  Score=28.91  Aligned_cols=45  Identities=20%  Similarity=0.248  Sum_probs=24.9

Q ss_pred             EEEEEEEEEEECCCCCEEEEEEEEE--EECCCC--CCCCEEEEEEEEEEC
Q ss_conf             4799734661004886799999999--750565--566226999998539
Q gi|254780598|r  160 GGTAGVGVEVGGLSESLVARLEYRA--SKYSKV--EGFYNTISLGVGMKF  205 (205)
Q Consensus       160 g~~~G~Gvey~~it~~~~~r~EY~y--~df~~~--~~~~~~~~~G~~ykF  205 (205)
                      ...++++++. .++++|++.+.+.|  .+|...  +-+...+.+|+.|+|
T Consensus       295 ~~~~~~~~~h-~~~~~l~~~~~~~y~~~~y~g~~r~D~~~~~~~~l~Y~~  343 (380)
T pfam10082       295 ETTYSLGVDH-ELRRNLTLSLRLSYGQDDYQGSGRKDETYSAEAGLTYKL  343 (380)
T ss_pred             EEEEEEEEEE-EEECCEEEEEEEEEEEEECCCCCCCCCEEEEEEEEEEEE
T ss_conf             9999999999-730018999999999847468872013399999999984


No 35 
>pfam11854 DUF3374 Protein of unknown function (DUF3374). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 665 to 712 amino acids in length.
Probab=96.51  E-value=0.038  Score=28.81  Aligned_cols=23  Identities=39%  Similarity=0.352  Sum_probs=11.1

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9443789999999998410000246
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAAD   25 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad   25 (205)
                      ||..+-.+++++++++  ++|+|+|
T Consensus         1 mkf~l~lialAll~~~--~~a~A~~   23 (675)
T pfam11854         1 MKFKLNLIALALLAAA--FSANAAD   23 (675)
T ss_pred             CCCCHHHHHHHHHHHC--CHHHHCC
T ss_conf             9732229999998624--3333156


No 36 
>PRK09980 ompL outer membrane porin L; Provisional
Probab=96.12  E-value=0.064  Score=27.61  Aligned_cols=77  Identities=12%  Similarity=0.048  Sum_probs=46.3

Q ss_pred             EEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECC--CCCCCCEEEEEEE
Q ss_conf             75431276778988544776444313455567752047997346610048867999999997505--6556622699999
Q gi|254780598|r  124 GGYEVSDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYS--KVEGFYNTISLGV  201 (205)
Q Consensus       124 ~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~--~~~~~~~~~~~G~  201 (205)
                      .+|-+++.+.. .-- ..+.+..  ......+..+..|-.-+-+.| .++++|+=-.|+.|.|-.  +.+-....+||||
T Consensus       152 ~~y~~~~~~~~-~~~-~tY~~~v--nd~~~~NgKk~~~E~n~~~~Y-k~~~~w~PY~E~~~ld~~~~~~~r~q~r~RVGv  226 (230)
T PRK09980        152 WNFIITDKFSY-TFE-PHYFYNV--NDFNSSNGTKHHWEITNTFRY-RINEHWLPYFELRWLDRNVGPYHREQNQIRIGA  226 (230)
T ss_pred             EEEEECCCEEE-EEE-EEEEEEC--CCCEECCCCCHHHHEEEEEEE-ECCCCCCCEEEEEECCCCCCCCCCCEEEEEEEE
T ss_conf             77897574379-973-0999850--770732786404431026888-428962431898742235676777135799988


Q ss_pred             EEEC
Q ss_conf             8539
Q gi|254780598|r  202 GMKF  205 (205)
Q Consensus       202 ~ykF  205 (205)
                      .|-|
T Consensus       227 ~y~F  230 (230)
T PRK09980        227 KYFF  230 (230)
T ss_pred             EEEC
T ss_conf             8629


No 37 
>PRK09752 adhesin; Provisional
Probab=96.09  E-value=0.066  Score=27.54  Aligned_cols=26  Identities=23%  Similarity=0.169  Sum_probs=12.1

Q ss_pred             CEEEEEEEEEEEECCCCCEEEEEEEEE
Q ss_conf             204799734661004886799999999
Q gi|254780598|r  158 AIGGTAGVGVEVGGLSESLVARLEYRA  184 (205)
Q Consensus       158 ~~g~~~G~Gvey~~it~~~~~r~EY~y  184 (205)
                      +.-.-+-+|||= .|+++|+++..-.+
T Consensus      1205 rNiGELKvGVEG-QINk~lnvWGNVaq 1230 (1250)
T PRK09752       1205 KQRGEIKVGVTG-NISQRVSLRGSVAW 1230 (1250)
T ss_pred             CCCCEEECCEEE-EECCCEEEEEEEEE
T ss_conf             130103611699-97674678987668


No 38 
>PRK11528 hypothetical protein; Provisional
Probab=96.03  E-value=0.071  Score=27.39  Aligned_cols=45  Identities=16%  Similarity=0.180  Sum_probs=29.9

Q ss_pred             EEEEEEEEEEEECCCCCEEEEEEEEEEE--CCCCCCCCEEEEEEEEEEC
Q ss_conf             0479973466100488679999999975--0565566226999998539
Q gi|254780598|r  159 IGGTAGVGVEVGGLSESLVARLEYRASK--YSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       159 ~g~~~G~Gvey~~it~~~~~r~EY~y~d--f~~~~~~~~~~~~G~~ykF  205 (205)
                      .|..-++-+-. -.+++|+..+.|||.|  +++... .|.+-.-+.|.|
T Consensus       208 ~G~NGa~alwW-~~t~~~ttgiqYRYAdNKLG~~~~-~D~iiYs~kYnF  254 (254)
T PRK11528        208 DGINGAVALWW-NATKHLTTGIQYRYADNKLGEDFL-QDAIIYSIKYNF  254 (254)
T ss_pred             CCCCCEEEEEE-EECCCEEEEEEEEEHHCCCCCCCC-CCEEEEEEEECC
T ss_conf             76235389988-405760042699800012573223-753899996249


No 39 
>pfam11383 DUF3187 Protein of unknown function (DUF3187). This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=95.99  E-value=0.041  Score=28.61  Aligned_cols=119  Identities=14%  Similarity=0.117  Sum_probs=66.2

Q ss_pred             EEEEEEEEEC-C--CEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCC
Q ss_conf             8998546404-8--379984510132155566662122321489998975431276778988544776444313455567
Q gi|254780598|r   79 SIFAGYNVED-S--CIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEIT  155 (205)
Q Consensus        79 G~~~GYn~q~-~--~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~  155 (205)
                      .++..|++-. .  ..=+|+-+-++.  ..  .+........-.+..--+|.- ++--+|.++|++..+.+  .......
T Consensus       117 t~Y~qYql~~~~~hglS~GgSLyyN~--v~--~g~F~~~~FEQ~lQlNysy~~-~~h~~~s~lG~t~r~~~--~~~~~l~  189 (273)
T pfam11383       117 TLYLQYQLFQNEHHGLSIGGSLYYNN--VS--SGPFKGESFEQGLQLNYSYQK-DRHHFYSTLGVVFRNSD--EALNDLP  189 (273)
T ss_pred             HHHHHEEEECCCCCCEEEEEEEEECC--CC--CCCCCCCCHHHHHEEEEEEEC-CCCEEEEEEEEEEECCC--CCCCCCC
T ss_conf             87641243048875278779999546--46--776366652232113005543-77528889889983587--4236655


Q ss_pred             CCCEEEEEEEEEEEECCCCCEEEEEEEEEEECC-C----CCCCCEEEEEEEEEEC
Q ss_conf             752047997346610048867999999997505-6----5566226999998539
Q gi|254780598|r  156 PIAIGGTAGVGVEVGGLSESLVARLEYRASKYS-K----VEGFYNTISLGVGMKF  205 (205)
Q Consensus       156 ~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~-~----~~~~~~~~~~G~~ykF  205 (205)
                      -....|+.++|.|| ++++|-.+-+||.+.+=. +    .+-..|.+.+|-.|++
T Consensus       190 ~k~~t~s~~~gY~Y-~l~~~H~ll~ey~~yqG~~~~~~~fse~SnE~~LGYRY~~  243 (273)
T pfam11383       190 YKKNTLSWAIGYEY-RLTERHHLLIEYHWYQGAVEGDTDFSEASNEAVLGYRYYM  243 (273)
T ss_pred             CCCCEEEEEEEEEE-EECCCHHHHHHHHHHCCCCCCCCHHCCCCCEEEEEEEEEE
T ss_conf             34415777721267-5237614654334333642686100112413578665773


No 40 
>pfam00267 Porin_1 Gram-negative porin.
Probab=95.97  E-value=0.076  Score=27.22  Aligned_cols=80  Identities=16%  Similarity=0.245  Sum_probs=47.0

Q ss_pred             EEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC------CCC
Q ss_conf             99897543127677898854477644431345556775204799734661004886799999999750565------566
Q gi|254780598|r  120 LRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKV------EGF  193 (205)
Q Consensus       120 ~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~------~~~  193 (205)
                      .++-.+|.+++ +  |.-+.|+..+.............  .-.+-+.++| .+++.+..++.|.|..-.++      ...
T Consensus       210 ~~~ga~Y~~~~-l--~la~~Y~~~~~~~~~~~~~~~~~--~~~~e~~~~Y-~~~~g~~~~~~Y~~~~~~~~~~~~~~~~~  283 (334)
T pfam00267       210 WRLGGKYDANN-V--YLAVAYAQTRNATPYGDVGFANK--NQNFEVAAQY-QFDFGLRPRVSYAQSKGKDLNGAYGDNDL  283 (334)
T ss_pred             EEEEEEEEECC-E--EEEEEEEEEEECCCCCCCCCCCC--CEEEEEEEEE-EECCCCCEEEEEEEEECCCCCCCCCCCCE
T ss_conf             99999998054-8--99999865420101376433444--0469999999-74246316999998742223565577645


Q ss_pred             CEEEEEEEEEEC
Q ss_conf             226999998539
Q gi|254780598|r  194 YNTISLGVGMKF  205 (205)
Q Consensus       194 ~~~~~~G~~ykF  205 (205)
                      .|.+.+|+.|+|
T Consensus       284 ~~q~~lg~dY~f  295 (334)
T pfam00267       284 VKYVDVGATYYF  295 (334)
T ss_pred             EEEEEEEEEEEE
T ss_conf             899999989996


No 41 
>PRK09980 ompL outer membrane porin L; Provisional
Probab=95.96  E-value=0.013  Score=31.16  Aligned_cols=63  Identities=10%  Similarity=-0.006  Sum_probs=33.0

Q ss_pred             EEEEEEEEECCCEEEEEEEEEEEEEEE---ECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEC
Q ss_conf             998975431276778988544776444---31345556775204799734661004886799999999750
Q gi|254780598|r  120 LRIRGGYEVSDSLLLYATVGPDVAQKY---ETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKY  187 (205)
Q Consensus       120 ~~~r~Gy~~~~~~l~Y~~~G~a~~~~~---~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df  187 (205)
                      --+|++|.+.|.+-+-++-=|-+.+.+   .++.....+..+.    ..=+-| .+++.|....|+.|.+-
T Consensus       106 PYLkl~Y~fd~~~~~~~RYRYd~~~yds~dlnG~~d~~d~hr~----d~Y~~y-~~~~~~~~~~~~tY~~~  171 (230)
T PRK09980        106 VYLDVNYKFTPWFNLTVRNRYNHNNYSSTDLNGELDNNDSYEI----GNYWNF-IITDKFSYTFEPHYFYN  171 (230)
T ss_pred             CCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEE----EEEEEE-EECCCEEEEEEEEEEEE
T ss_conf             4177777665871588998852455674345776677750773----005778-97574379973099985


No 42 
>PRK10993 outer membrane protease; Reviewed
Probab=95.66  E-value=0.1  Score=26.55  Aligned_cols=49  Identities=16%  Similarity=0.075  Sum_probs=34.4

Q ss_pred             CCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC-----------------------CCCCEEEEEEEEEEC
Q ss_conf             75204799734661004886799999999750565-----------------------566226999998539
Q gi|254780598|r  156 PIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKV-----------------------EGFYNTISLGVGMKF  205 (205)
Q Consensus       156 ~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~-----------------------~~~~~~~~~G~~ykF  205 (205)
                      +..-=+.+.+-+-| .+|||..+.+|..|..+..-                       +...-++++|+-|||
T Consensus       240 k~s~y~s~~~~agY-~vtp~~kl~~e~~~~ky~~~kg~T~i~d~~tG~~~~~~d~AGi~n~~~tvs~GLkY~F  311 (311)
T PRK10993        240 KNSPYYSASINAGY-YVTPNAKLFVEGAYNKYFEGKGDTQIYDHATGESSYGKDAAGIENQNFTVTAGLKYRF  311 (311)
T ss_pred             CCCCEEEEEEEEEE-EECCCEEEEEEEEEEEEECCCCCCEEEECCCCCEEECCCCCCCCCCCEEEEEEEEEEC
T ss_conf             67642899981004-6279815999999999851568747874478716614764220332159998777869


No 43 
>PRK13483 enterobactin receptor protein; Provisional
Probab=95.37  E-value=0.13  Score=25.98  Aligned_cols=40  Identities=28%  Similarity=0.352  Sum_probs=17.3

Q ss_pred             EEEEEEECCCCCEEEEE--------EEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             73466100488679999--------9999750565566226999998539
Q gi|254780598|r  164 GVGVEVGGLSESLVARL--------EYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       164 G~Gvey~~it~~~~~r~--------EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      -+.+.| .++++|.+.+        +|+|..++-..- -=++.+++.|+|
T Consensus       616 dl~~~y-~~~~~~~l~~~v~NLfDk~Y~~~~~gy~~~-GR~~~~~~~y~F  663 (663)
T PRK13483        616 DLGANY-QLTDSLKFSAGIYNLFDKEINYEEYGYVED-GRRYWLGMTYSF  663 (663)
T ss_pred             EEEEEE-EECCCEEEEEEEECCCCCCCCCCCCCCCCC-CEEEEEEEEEEC
T ss_conf             979999-958987999999936699305334777889-909999999989


No 44 
>pfam09381 Porin_OmpG Outer membrane protein G (OmpG). Porins are channel proteins in the outer membrane of gram negative bacteria which mediate the uptake of molecules required for growth and survival. Escherichia coli OmpG forms a 14 stranded beta-barrel and in contrast to most porins, appears to function as a monomer. The central pore of OmpG is wider than other E. coli porins and it is speculated that it may form a non-specific channel for the transport of larger oligosaccharides.
Probab=95.29  E-value=0.14  Score=25.83  Aligned_cols=81  Identities=16%  Similarity=0.162  Sum_probs=45.1

Q ss_pred             EEEEEEEEECCC-EEEEEEEEEEEEEE---EECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC---C
Q ss_conf             998975431276-77898854477644---4313455567752047997346610048867999999997505655---6
Q gi|254780598|r  120 LRIRGGYEVSDS-LLLYATVGPDVAQK---YETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVE---G  192 (205)
Q Consensus       120 ~~~r~Gy~~~~~-~l~Y~~~G~a~~~~---~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~---~  192 (205)
                      +|+-+-..+++. +-||.+.|+-.+.-   ..+..-...+.++    +|+=++| .+.+.+++-+||-|---...+   .
T Consensus       193 iR~YlP~~~g~tTiTPY~R~gld~wsn~~w~~~~~r~~~~~~R----lGl~~~~-~~~~glsmtLeYAyE~q~hd~~~~d  267 (280)
T pfam09381       193 IRAYLPLTLGNHSVTPYTRIGLDRWSNWDWQDDIEREGHDFNR----VGLFYGY-DFQNGLSVSLEYAFEWQDHDEGDSD  267 (280)
T ss_pred             EECEEEEEECCCCCCCCEEEEHHHHCCCCCCCCHHHCCCCCCC----EEEEEEE-CCCCCCEEEEEEEEEECCCCCCCCC
T ss_conf             0000345336730044214303232144223667660884000----1367853-1688737765233220204568744


Q ss_pred             CCEEEEEEEEEEC
Q ss_conf             6226999998539
Q gi|254780598|r  193 FYNTISLGVGMKF  205 (205)
Q Consensus       193 ~~~~~~~G~~ykF  205 (205)
                      ++|-.-||++|-|
T Consensus       268 kFHyaGvG~~YsF  280 (280)
T pfam09381       268 KFHYAGVGVNYSF  280 (280)
T ss_pred             CEEECCCCEEECC
T ss_conf             2033030035319


No 45 
>COG3713 OmpV Outer membrane protein V [Cell envelope biogenesis, outer membrane]
Probab=95.22  E-value=0.15  Score=25.73  Aligned_cols=80  Identities=14%  Similarity=-0.024  Sum_probs=51.8

Q ss_pred             EEEECCCEEEEEEEEEEEEEEEECCCCC-------------CCC--CCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC
Q ss_conf             5431276778988544776444313455-------------567--7520479973466100488679999999975056
Q gi|254780598|r  125 GYEVSDSLLLYATVGPDVAQKYETGKAG-------------EIT--PIAIGGTAGVGVEVGGLSESLVARLEYRASKYSK  189 (205)
Q Consensus       125 Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~-------------~~~--~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~  189 (205)
                      -+...+++.+=.-.|+.|.+.+......             ..+  .-....-+++=++| .||+||++.+--+|+.+..
T Consensus       156 ~~~~~~~~~ispg~g~s~~s~~Y~~yYfGVs~~esa~Sgl~~Y~p~~g~~s~~l~ls~~y-~~t~~w~~~~~~~~~RL~g  234 (258)
T COG3713         156 PRMLIGRLSLSPGPGVSWASSKYNDYYFGVSAAESARSGLASYNPGGGAKSPGLGLSATY-MITDHWSVGGTAGYSRLSG  234 (258)
T ss_pred             EEECCCCEEECCCCCEEEECCCCCCEEECCCHHHHHHCCCCCCCCCCCCCCCCCEEEEEE-EECCCEEEEEEEEEEECCC
T ss_conf             983059789854773277122334202052889973047774079988434672379999-7068779998887131033


Q ss_pred             C--------CCCCEEEEEEEEEEC
Q ss_conf             5--------566226999998539
Q gi|254780598|r  190 V--------EGFYNTISLGVGMKF  205 (205)
Q Consensus       190 ~--------~~~~~~~~~G~~ykF  205 (205)
                      .        +...-.+.+||.|||
T Consensus       235 daadSPiV~~~~q~~~~~~v~YrF  258 (258)
T COG3713         235 DAADSPIVDRRNQFSVGTGVTYRF  258 (258)
T ss_pred             CCCCCCCEECCCCEEEEEEEEEEC
T ss_conf             101497466156358998899859


No 46 
>pfam10626 TraO Conjugative transposon protein TraO. This is a family of conjugative transposon proteins.
Probab=95.22  E-value=0.15  Score=25.73  Aligned_cols=174  Identities=16%  Similarity=0.111  Sum_probs=75.5

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             94437899999999984100002466543566666555634554444441154210001223333446677777602689
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRAHHGGRGVVPTIATNRYVPIRHDFNGPYAGLSALYNGSFGEEAHHNAGGSI   80 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~~~~~~~~~~~~~~~~~~~~~~w~G~y~g~~~g~~~~~~~~~~~~~~~G~   80 (205)
                      |||.+..+.+..++ ..+..|+|.-..+--.-...           ...  --+|++.         ..+..+.+...|+
T Consensus         1 MKk~~~i~~~~~l~-l~~~~a~AQR~LPkqkGie~-----------~~g--~~~g~~~---------~~~~~~~~y~~g~   57 (193)
T pfam10626         1 MKRKLFIILLALLA-LFAGQAHAQRCLPGMKGIQL-----------TAG--MVDGFHS---------FKKRNDFGYHFGL   57 (193)
T ss_pred             CCEEEEEHHHHHHH-HHCCHHHHHHHCCCCCEEEE-----------EEE--EECCCEE---------CCCCCCCCEEEEE
T ss_conf             96188608899999-86498888764777711799-----------853--2146110---------4678877479999


Q ss_pred             -EEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEE------CCCEEEEE----EEEEEEEEEEECC
Q ss_conf             -985464048379984510132155566662122321489998975431------27677898----8544776444313
Q gi|254780598|r   81 -FAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEV------SDSLLLYA----TVGPDVAQKYETG  149 (205)
Q Consensus        81 -~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~------~~~~l~Y~----~~G~a~~~~~~~~  149 (205)
                       ..-|.-.-+.||+|+|-.-.+..-+.   ..+....   ..+..||-+      +.++.+|+    .+||-..+....-
T Consensus        58 als~Y~K~~n~wv~g~EY~~k~~~Yr~---~~IP~~q---ft~egGY~~~~LSD~~Knvfl~~G~SaL~GYEtvN~g~kl  131 (193)
T pfam10626        58 AVSTYTKNGNKWVFGGEYLQKNYPYRD---TRIPVSQ---FTGEGGYYYNFLSDAGKNFFLSLGLSALAGYETVNWGEKL  131 (193)
T ss_pred             EEEEECCCCCEEEEEEEHHHHHCCCCC---CCCCHHH---HEEECCEEEEEEECCCCEEEEEECHHHEEEEEEECCCCCC
T ss_conf             987631777589987102013289653---3650899---0540627999972598179997050116303675378730


Q ss_pred             -CCCCCCCCCEEEEEE----EEEEEECCCCCEEEEEEEEEEE-CCCCCCCCEEEEEEEEEEC
Q ss_conf             -455567752047997----3466100488679999999975-0565566226999998539
Q gi|254780598|r  150 -KAGEITPIAIGGTAG----VGVEVGGLSESLVARLEYRASK-YSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       150 -~~~~~~~~~~g~~~G----~Gvey~~it~~~~~r~EY~y~d-f~~~~~~~~~~~~G~~ykF  205 (205)
                       ..+..=..+....+|    +-+|. .+||++..-+.-|-.- |+..-..+| ..+|++.||
T Consensus       132 L~DGatL~~~d~FIYGga~~l~~E~-yLtDrivll~~~r~R~L~Gsd~~~Fh-~~~g~Glkf  191 (193)
T pfam10626       132 LPDGATLTDGDSFIYGGAVTLELET-YLTDRVVLLLNARERLLFGSDSGKFH-TQFGLGIKI  191 (193)
T ss_pred             CCCCCEEECCCCEEECCCCEEEEEE-EEEEEEEEEEECCEEEEECCCCCCEE-EEECCEEEE
T ss_conf             6686662058845887730699999-88514999982306899625547586-600021799


No 47 
>pfam01389 OmpA_membrane OmpA-like transmembrane domain. The structure of OmpA transmembrane domain shows that it consists of an eight stranded beta barrel. This family includes some other distantly related outer membrane proteins with low scores.
Probab=94.78  E-value=0.2  Score=25.06  Aligned_cols=89  Identities=17%  Similarity=0.089  Sum_probs=38.5

Q ss_pred             CCEEEEEEEEEEECCCCC-CCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEE-EEEECCCCCCCCCCCEEEEEEEE
Q ss_conf             837998451013215556-6662122321489998975431276778988544776-44431345556775204799734
Q gi|254780598|r   89 SCIMYGVEGDVRYTVPVL-ADNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVA-QKYETGKAGEITPIAIGGTAGVG  166 (205)
Q Consensus        89 ~~~V~G~e~d~~~~~~~~-~~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~-~~~~~~~~~~~~~~~~g~~~G~G  166 (205)
                      +.|.+|..+-........ .......++.......-+||.++|.+-+-  +||... +.+.+......+....++++.+=
T Consensus         5 n~~Y~G~~~G~s~~~~~~~~~~~~~~d~~~~~~glf~GYqfn~~~a~E--~gY~~lG~~~~~~~~~~~~~~~~~~~l~~k   82 (175)
T pfam01389         5 NTWYTGAKAGWASFHDTGLIEGNGPTHRNSLTAGAFGGYQINNYLAAE--LGYDYLGRMPYKGKGKNNAHKAQGVTLSLK   82 (175)
T ss_pred             CCEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEE--EEEEECCCCCCCCCCCCCCEEEEEEEEEEE
T ss_conf             957896640256895763445787656787178999863103112268--742431654335534345404689999999


Q ss_pred             EEEECCCCCEEEEE
Q ss_conf             66100488679999
Q gi|254780598|r  167 VEVGGLSESLVARL  180 (205)
Q Consensus       167 vey~~it~~~~~r~  180 (205)
                      .-| .|+++|.+-+
T Consensus        83 ~~~-pl~d~~~ly~   95 (175)
T pfam01389        83 LSY-PLTDDLDVYG   95 (175)
T ss_pred             EEE-EECCCEEEEE
T ss_conf             888-6148567999


No 48 
>COG5338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.69  E-value=0.019  Score=30.29  Aligned_cols=62  Identities=27%  Similarity=0.189  Sum_probs=37.8

Q ss_pred             CEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEE
Q ss_conf             214899989754312767789885447764443134555677520479973466100488679
Q gi|254780598|r  115 GIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLV  177 (205)
Q Consensus       115 ~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~  177 (205)
                      .-..++++|.||.+.|.+-+|..+-......+...+......+..+|.+++|+|+ -+.+++.
T Consensus       262 ~n~~s~~~R~gYelSPal~pf~e~~vgk~~YD~ridt~G~eRSs~~Y~~r~G~~~-D~gEk~~  323 (468)
T COG5338         262 RNLASLTGRIGYELSPALIPFAEAEVGKRDYDTRIDTQGYERSSDGYGARVGAEF-DLGEKLR  323 (468)
T ss_pred             CCCCEEEEECCEEECCCCCEEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCEEE-CHHHHHC
T ss_conf             4400023211123365422026762373102110244342234442000132466-0004216


No 49 
>PRK12580 outer membrane protease; Reviewed
Probab=94.43  E-value=0.25  Score=24.60  Aligned_cols=47  Identities=15%  Similarity=0.125  Sum_probs=32.5

Q ss_pred             CEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC------------------------CCCEEEEEEEEEEC
Q ss_conf             2047997346610048867999999997505655------------------------66226999998539
Q gi|254780598|r  158 AIGGTAGVGVEVGGLSESLVARLEYRASKYSKVE------------------------GFYNTISLGVGMKF  205 (205)
Q Consensus       158 ~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~------------------------~~~~~~~~G~~ykF  205 (205)
                      .-=+.+.+-+-| .+||+..+.+|..|..+.+.+                        ...-++++|+-|||
T Consensus       242 s~yys~~~~agY-~vtp~~klf~e~~~~ky~~~kgdT~i~d~~tG~s~~~~~d~AGi~n~n~tvs~GLkY~F  312 (312)
T PRK12580        242 SRYYGTVINAGY-YVTPNAKVFAEFTYSKYDEGKGGTQTIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRF  312 (312)
T ss_pred             CCEEEEEEECCE-EECCCEEEEEEEEEEEEECCCCCCEEEECCCCCEEEECCCCCCCCCCCEEEEEEEEEEC
T ss_conf             641899984025-76798569999999877325686288866888365405774000243249999878869


No 50 
>pfam06178 KdgM Oligogalacturonate-specific porin protein (KdgM). This family consists of several bacterial proteins which are homologous to the oligogalacturonate-specific porin protein KdgM from Erwinia chrysanthemi. The phytopathogenic Gram-negative bacteria Erwinia chrysanthemi secretes pectinases, which are able to degrade the pectic polymers of plant cell walls, and uses the degradation products as a carbon source for growth. KdgM is a major outer membrane protein, whose synthesis is strongly induced in the presence of pectic derivatives. KdgM behaves like a voltage-dependent porin that is slightly selective for anions and that exhibits fast block in the presence of trigalacturonate. In contrast to most porins, KdgM seems to be monomeric.
Probab=94.36  E-value=0.26  Score=24.52  Aligned_cols=51  Identities=10%  Similarity=0.062  Sum_probs=36.6

Q ss_pred             CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC-CCCCCEEEEEEEEEEC
Q ss_conf             677520479973466100488679999999975056-5566226999998539
Q gi|254780598|r  154 ITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSK-VEGFYNTISLGVGMKF  205 (205)
Q Consensus       154 ~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~-~~~~~~~~~~G~~ykF  205 (205)
                      .+.....|..-.-++| .+.++|.--+|+.+.+-.+ .|.....+||||.|-|
T Consensus       167 ~d~k~~~~e~n~~~~Y-k~~~~W~PyvEvg~v~~~~~~d~rq~RyRVGv~Y~F  218 (218)
T pfam06178       167 SDGKKTNWEYNVKLAY-KIDKHWTPYVEVGNVDVNNNTDERQTRYRVGVQYSF  218 (218)
T ss_pred             CCCCCCEEEEEEEEEE-ECCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEEEC
T ss_conf             4798851688899999-828982304999842567888662767998889769


No 51 
>COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain [Function unknown]
Probab=94.01  E-value=0.31  Score=24.12  Aligned_cols=46  Identities=13%  Similarity=0.190  Sum_probs=34.4

Q ss_pred             CCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             5204799734661004886799999999750565566226999998539
Q gi|254780598|r  157 IAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       157 ~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      .+....+++|+.+ .+++|.++.+-|.+ .|++-.. -|.+.+++.+||
T Consensus       532 srdaa~i~~G~~l-~~s~n~sl~~~y~~-~fg~r~~-~~s~~~~l~~~F  577 (577)
T COG4625         532 SRDAALLGLGAVL-PVSPNAGLWARYEG-QFGDRKV-DDSGGLRLQVRF  577 (577)
T ss_pred             CCCCEEEECCEEE-EECCCEEEEEEEEE-EECCCEE-CCCCCEEEEECC
T ss_conf             6642477545168-61563268887767-9636245-145433457439


No 52 
>PRK10455 periplasmic protein; Reviewed
Probab=93.94  E-value=0.055  Score=27.97  Aligned_cols=29  Identities=38%  Similarity=0.314  Sum_probs=25.4

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             94437899999999984100002466543
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRR   29 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~   29 (205)
                      |||+...+.+|.|+|++++.|+|||....
T Consensus         1 Mrkltal~~AS~l~lg~~~~A~aA~~~~~   29 (161)
T PRK10455          1 MRKLTALFVASTLALGAANLAHAADTTTA   29 (161)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             91799999999999836688887236899


No 53 
>pfam06727 DUF1207 Protein of unknown function (DUF1207). This family consists of a number of hypothetical bacterial proteins of around 410 residues in length which seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.67  E-value=0.36  Score=23.79  Aligned_cols=84  Identities=19%  Similarity=0.246  Sum_probs=56.2

Q ss_pred             EEEEEEEEECCCEEEEEEEEEEEEEEE-------------ECCC-----------------CCCCCCCCEEEEEEEEEEE
Q ss_conf             998975431276778988544776444-------------3134-----------------5556775204799734661
Q gi|254780598|r  120 LRIRGGYEVSDSLLLYATVGPDVAQKY-------------ETGK-----------------AGEITPIAIGGTAGVGVEV  169 (205)
Q Consensus       120 ~~~r~Gy~~~~~~l~Y~~~G~a~~~~~-------------~~~~-----------------~~~~~~~~~g~~~G~Gvey  169 (205)
                      +-.++.|.+ +..-+|+-+|+-..+..             ...+                 ...+.++....++.+|+|.
T Consensus       217 ~Dl~lS~e~-p~iRvYGG~G~i~~rd~s~~~p~~~e~GaElRsp~gl~~l~~rpv~A~d~k~~eq~~~~~d~s~~~G~E~  295 (337)
T pfam06727       217 VDLRLSYEL-PQIRVYGGGGGIFSRDPSPIKPWYIEYGAELRSPWGLDNLHARPIFAMDFKNWEQQKWNIDQSYRAGMEW  295 (337)
T ss_pred             EEEEEEEEC-CCEEEEECCEEEEECCCCCCCCEEEECCCEEECCCCCCCCCCEEEEEEEEEEHHHHCCCCCCEEEEEEEE
T ss_conf             017997664-7579981401689548777887057617011076667863430689997523454145867248986676


Q ss_pred             ECCC---CCEEEEEEEEEEECCCC----CCCCEEEEEEEEEEC
Q ss_conf             0048---86799999999750565----566226999998539
Q gi|254780598|r  170 GGLS---ESLVARLEYRASKYSKV----EGFYNTISLGVGMKF  205 (205)
Q Consensus       170 ~~it---~~~~~r~EY~y~df~~~----~~~~~~~~~G~~ykF  205 (205)
                      ..+.   .+|.+-+|| |.-|+..    +-..+-..+|+.|.|
T Consensus       296 ~~~q~~gRk~~~llEY-~~G~Sp~GQF~re~~~Y~Gigl~Ygf  337 (337)
T pfam06727       296 AKFQAFGRKLRLLLEY-HDGFSPTGQFFREKTDYLGFGLHYGF  337 (337)
T ss_pred             EHEECCCCEEEEEEEE-CCCCCCCCCEEEEECCEEEEEEEECC
T ss_conf             2100437136776620-04999876057631327885358159


No 54 
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=93.64  E-value=0.36  Score=23.75  Aligned_cols=49  Identities=12%  Similarity=0.003  Sum_probs=33.4

Q ss_pred             CCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEE
Q ss_conf             5677520479973466100488679999999975056556622699999853
Q gi|254780598|r  153 EITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMK  204 (205)
Q Consensus       153 ~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~yk  204 (205)
                      ..+.+.+||++.+.+|| .|+++|++.+.-.+-.+++=.  .+..-+=+-|-
T Consensus      1089 g~s~~G~~y~l~a~~ey-r~~~~~~~G~~~~~~~s~dY~--p~~~~lY~RY~ 1137 (1158)
T PRK11447       1089 GSSSQGFGYTARALIER-RVTSNWFVGTAVDIQQAKDYA--PSHALLYVRYS 1137 (1158)
T ss_pred             CCCCCCCCEEEEEEEEE-EECCCEEEECEEECCCCCCCC--CCCEEEEEEEE
T ss_conf             88888632367788999-715867863105015335778--35146789896


No 55 
>pfam01278 Omptin Omptin family. The omptin family is a family of serine proteases.
Probab=93.53  E-value=0.38  Score=23.65  Aligned_cols=49  Identities=14%  Similarity=0.086  Sum_probs=33.5

Q ss_pred             CCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC------------------------CCCEEEEEEEEEEC
Q ss_conf             752047997346610048867999999997505655------------------------66226999998539
Q gi|254780598|r  156 PIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVE------------------------GFYNTISLGVGMKF  205 (205)
Q Consensus       156 ~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~------------------------~~~~~~~~G~~ykF  205 (205)
                      +..-=+.+.+-+-| .+||+..+.+|..|..+.+.+                        -..-++++|+-|||
T Consensus       223 kns~yys~~~~agY-~vtp~~klf~e~~~~ky~~~kg~T~i~d~~tG~~~~~~~d~AGi~n~~~tvs~GLkY~F  295 (295)
T pfam01278       223 ENQNYYSVAVNAGY-YVTPNAKVFVEGSYSKVTNKKGDTSLYDIASGNTSGGEGDAAGIENYNFTVTAGLKYRF  295 (295)
T ss_pred             CCCCEEEEEEECCE-EECCCEEEEEEEEEEEEECCCCCCEEEECCCCCEEECCCCCCCCCCCCEEEEEEEEEEC
T ss_conf             67641899984125-76798569999999877325687478873688656326775331322148998778869


No 56 
>pfam06551 DUF1120 Protein of unknown function (DUF1120). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=93.25  E-value=0.055  Score=27.98  Aligned_cols=34  Identities=29%  Similarity=0.207  Sum_probs=23.7

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             9443789999999998410000246654356666
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRAHHGG   34 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~~~~   34 (205)
                      |||++++.++.+-++.+.++|+||+........+
T Consensus         1 mkK~l~~~~i~a~l~~~~ssa~aa~~ta~LkV~G   34 (145)
T pfam06551         1 MKKNLAATAIAAGLAVLATSAQAADSTAVLKVTG   34 (145)
T ss_pred             CCHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEE
T ss_conf             9237899999999998603142257744699999


No 57 
>pfam04338 DUF481 Protein of unknown function, DUF481. This family includes several proteins of uncharacterized function.
Probab=93.14  E-value=0.44  Score=23.31  Aligned_cols=47  Identities=21%  Similarity=0.328  Sum_probs=28.5

Q ss_pred             CEEEEEEEEEEEECCCCCEEEEEEEEEE--ECCCC--CCCCEEEEEEEEEEC
Q ss_conf             2047997346610048867999999997--50565--566226999998539
Q gi|254780598|r  158 AIGGTAGVGVEVGGLSESLVARLEYRAS--KYSKV--EGFYNTISLGVGMKF  205 (205)
Q Consensus       158 ~~g~~~G~Gvey~~it~~~~~r~EY~y~--df~~~--~~~~~~~~~G~~ykF  205 (205)
                      ..-+..-.|+++ .|+++|++++.|.+.  .-...  +-.-.+++++++|+|
T Consensus       160 d~~~~~~~~l~~-~l~~~lsl~~~~~~~yds~P~~~~~~~D~~~~~~l~y~f  210 (210)
T pfam04338       160 NTRLNSETGLTV-KLTDNLSLKLSYEVDYNSDPPAGKKKTDTTTSVSLGYSF  210 (210)
T ss_pred             CEEEEEEEEEEE-EEECEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEC
T ss_conf             679999999999-830107999999999937799998874539999999989


No 58 
>PRK10159 outer membrane phosphoporin protein E; Provisional
Probab=93.04  E-value=0.46  Score=23.24  Aligned_cols=43  Identities=14%  Similarity=0.319  Sum_probs=34.2

Q ss_pred             EEEEEEEEECCCCCEEEEEEEEEEECCCCC----CCCEEEEEEEEEEC
Q ss_conf             997346610048867999999997505655----66226999998539
Q gi|254780598|r  162 TAGVGVEVGGLSESLVARLEYRASKYSKVE----GFYNTISLGVGMKF  205 (205)
Q Consensus       162 ~~G~Gvey~~it~~~~~r~EY~y~df~~~~----~~~~~~~~G~~ykF  205 (205)
                      .+-+|++| .+++|+.+-+||+...+.+.+    ..-|.+.+|+.|.|
T Consensus       305 ~~~~ga~Y-~Fnkn~~~y~~Yk~n~ld~~~~~~~~~dd~~~~GlrY~F  351 (351)
T PRK10159        305 YIDVGATY-YFNKNMSAFVDYKINQLDSDNKLNINNDDIVAVGMTYQF  351 (351)
T ss_pred             EEEEEEEE-EECCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf             69986799-957981589988601557755568876788999618859


No 59 
>pfam11059 DUF2860 Protein of unknown function (DUF2860). This bacterial family of proteins has no known function.
Probab=92.61  E-value=0.53  Score=22.91  Aligned_cols=74  Identities=14%  Similarity=-0.062  Sum_probs=44.4

Q ss_pred             CEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECC--CCCEEEEEEEEEEECC-CC---CCCCEEEEEEEEEE
Q ss_conf             677898854477644431345556775204799734661004--8867999999997505-65---56622699999853
Q gi|254780598|r  131 SLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGL--SESLVARLEYRASKYS-KV---EGFYNTISLGVGMK  204 (205)
Q Consensus       131 ~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~i--t~~~~~r~EY~y~df~-~~---~~~~~~~~~G~~yk  204 (205)
                      +..+-.+++++..+.+...+..........|.+-+..||..+  -++|++-+-+-|..-. ++   |.+..-+++||+||
T Consensus       218 ~h~~~lt~~y~~~~Yd~~NPIF~ktr~d~~~~~f~~Y~y~~~fg~~~~s~~~~agy~~~dSnI~FYD~~~~~~svGi~Y~  297 (297)
T pfam11059       218 RHSLVLTLSYGKREYDAANPIFNKTREDNEYGAFLAYEYANLFGWKNWSFNALAGYSTTDSNIDFYDESEYLVSVGLNYK  297 (297)
T ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCEECCCCEEEEEECCCC
T ss_conf             61599987132223333487524212377433677465406588755269998621235678626646434999612339


No 60 
>PRK10002 outer membrane protein F; Provisional
Probab=92.09  E-value=0.62  Score=22.56  Aligned_cols=43  Identities=16%  Similarity=0.322  Sum_probs=33.6

Q ss_pred             EEEEEEEEECCCCCEEEEEEEEEEECCCCC----CCCEEEEEEEEEEC
Q ss_conf             997346610048867999999997505655----66226999998539
Q gi|254780598|r  162 TAGVGVEVGGLSESLVARLEYRASKYSKVE----GFYNTISLGVGMKF  205 (205)
Q Consensus       162 ~~G~Gvey~~it~~~~~r~EY~y~df~~~~----~~~~~~~~G~~ykF  205 (205)
                      .+-+|++| .+++|+..-+||+.-.+.+.+    ..-|.+.+|+-|.|
T Consensus       316 ~~~lga~Y-~FnkN~~ty~~Yk~NllD~~~~~~~~~DD~~avGlrY~F  362 (362)
T PRK10002        316 YFEVGATY-YFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF  362 (362)
T ss_pred             EEEEEEEE-EECCCEEEEEEEEHHCCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf             59987599-955870268766000567655568877787999718829


No 61 
>smart00869 Autotransporter Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type IV pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different peptidase is used and in some cases no cleavage occurs.
Probab=92.03  E-value=0.63  Score=22.52  Aligned_cols=24  Identities=29%  Similarity=0.524  Sum_probs=9.9

Q ss_pred             EEEEEEEEEEECCCCCEEEEEEEEE
Q ss_conf             4799734661004886799999999
Q gi|254780598|r  160 GGTAGVGVEVGGLSESLVARLEYRA  184 (205)
Q Consensus       160 g~~~G~Gvey~~it~~~~~r~EY~y  184 (205)
                      ...+++|+++ .+.+.+.+.++|.+
T Consensus       231 ~~~~~~g~~~-~~~~~~~~~~~~~~  254 (261)
T smart00869      231 AAELGLGLSA-KLSNGLSLSLNYDG  254 (261)
T ss_pred             EEEEEEEEEE-EECCCEEEEEEEEE
T ss_conf             8999999999-98998899999999


No 62 
>pfam05275 CopB Copper resistance protein B precursor (CopB). This family consists of several bacterial copper resistance proteins. Copper is essential and serves as cofactor for more than 30 enzymes yet a surplus of copper is toxic and leads to radical formation and oxidation of biomolecules. Therefore, copper homeostasis is a key requisite for every organism. CopB serves to extrude copper when it approaches toxic levels.
Probab=91.80  E-value=0.67  Score=22.38  Aligned_cols=42  Identities=14%  Similarity=0.211  Sum_probs=20.1

Q ss_pred             EEEEEEEECCCCCEEEEEEEEEE-ECCCC---------CCCCEEEEEEEEEEC
Q ss_conf             97346610048867999999997-50565---------566226999998539
Q gi|254780598|r  163 AGVGVEVGGLSESLVARLEYRAS-KYSKV---------EGFYNTISLGVGMKF  205 (205)
Q Consensus       163 ~G~Gvey~~it~~~~~r~EY~y~-df~~~---------~~~~~~~~~G~~ykF  205 (205)
                      +|+=+-| -|+..+.--+.+.|. .||+.         +.+...+.+|+...|
T Consensus       159 ~GlRlRY-Ei~R~fAPYvGv~~~~~~G~tad~~r~~g~~~~~~~~v~GvR~wF  210 (210)
T pfam05275       159 LGLRLRY-EISREFAPYVGVEWERKFGDTADLARAAGEDTDETRFVAGVRFWF  210 (210)
T ss_pred             EEEEEEE-EEEECCCCEEEEEEEECCCCHHHHHHHCCCCCCCEEEEEEEEEEC
T ss_conf             6568888-984043454879998603767699997499976508999999869


No 63 
>PRK03757 hypothetical protein; Provisional
Probab=91.80  E-value=0.11  Score=26.33  Aligned_cols=24  Identities=42%  Similarity=0.513  Sum_probs=17.4

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9443789999999998410000246
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAAD   25 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad   25 (205)
                      |||++|+++++++++++ ++|+|++
T Consensus         1 mkk~~l~~~l~a~~~~~-~~A~a~~   24 (191)
T PRK03757          1 MKKTLLGLTLGSLLFSA-GSAVAAD   24 (191)
T ss_pred             CCHHHHHHHHHHHHHHC-CCCCCCC
T ss_conf             90439999999998630-4045752


No 64 
>pfam01617 Surface_Ag_2 Surface antigen. This family includes a number of bacterial surface antigens expressed on the surface of pathogens.
Probab=91.27  E-value=0.77  Score=22.07  Aligned_cols=174  Identities=13%  Similarity=0.023  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------CCC----
Q ss_conf             44378999999999841000024665435666665556345544444411542100012233-----------334----
Q gi|254780598|r    2 QKLFLAVGVSSLALASFCSAQAADPVRRAHHGGRGVVPTIATNRYVPIRHDFNGPYAGLSAL-----------YNG----   66 (205)
Q Consensus         2 kk~~la~av~~lal~~~~~A~Aad~~~~~~~~~~~~~~~~~~~~~~~~~~~w~G~y~g~~~g-----------~~~----   66 (205)
                      ||+++..++..+++.....+++........    ......-...+-|+...++.|.+.-.-.           ...    
T Consensus         4 kk~fi~~~l~~l~~~lp~~sfs~~~~~~~~----~~~~fYis~qYkPs~~~f~~FsikE~~~~t~~~~~l~~d~~~~~~~   79 (279)
T pfam01617         4 KKFFIGAALATLLSFLPGSSFSDPVGPISD----GEGSFYIGLKYNPSISHFGTFSAKETGGTTKGVFGLKKDWDGVVIS   79 (279)
T ss_pred             CEEEHHHHHHHHHHHCCCHHHCCCCCCCCC----CCCEEEEEEEECCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCC
T ss_conf             034299999999987763454063456767----7730999898876766656178973588740048722456543002


Q ss_pred             -------CC---CCC-CCCC-CEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCC--------------------
Q ss_conf             -------46---677-7776-026899854640483799845101321555666621223--------------------
Q gi|254780598|r   67 -------SF---GEE-AHHN-AGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLH--------------------  114 (205)
Q Consensus        67 -------~~---~~~-~~~~-~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~~~~~--------------------  114 (205)
                             ..   ... .++. .+.+.-+||-..  +.=+=+|+-+...+.+...+....+                    
T Consensus        80 ~~~~~~~~~~~y~~~f~~n~~~gfsGaiGYs~~--~~RiE~E~sye~Fdvk~~~~~~~~da~~y~al~r~~~~~~~~~~y  157 (279)
T pfam01617        80 KHANFDFSVPGYSFKYENNLFTGFGGAIGYSMD--GPRVELEVSYERFDVKNQGNNYKNDAHKYAALTRDAAIAAADSKY  157 (279)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC--CEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCE
T ss_conf             445677777899855056884206899968149--988999987658335899876146615899986002666667746


Q ss_pred             -------CEEEEEEEEEEEEEC---CCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEE
Q ss_conf             -------214899989754312---7677898854477644431345556775204799734661004886799999999
Q gi|254780598|r  115 -------GIGGSLRIRGGYEVS---DSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRA  184 (205)
Q Consensus       115 -------~~~~~~~~r~Gy~~~---~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y  184 (205)
                             -...++..-+=|++.   -.+.||+-+|...--++.    ......+..|..=+|+.| .|++++++-++-.|
T Consensus       158 ~v~kN~gis~~S~m~N~CYD~~~~~~~i~PY~C~GiG~d~i~~----~~~~~~K~aYq~KlGvsY-~ls~~i~lF~~gyY  232 (279)
T pfam01617       158 VVLKNDGLTDISLMLNACYDIAHEGIPVSPYVCAGVGADLISV----FGAINPKFSYQGKAGLSY-PITPEISLFAGGHY  232 (279)
T ss_pred             EEEEECCEEEEEEEEEEEEECCCCCCCCCCEEEEECCHHHHHH----CCCCCEEEEEEEEEEEEE-ECCCCEEEEEEEEE
T ss_conf             9999677886657999999622388620447877437746323----267533589999523788-73888599998899


Q ss_pred             EE
Q ss_conf             75
Q gi|254780598|r  185 SK  186 (205)
Q Consensus       185 ~d  186 (205)
                      +.
T Consensus       233 Hk  234 (279)
T pfam01617       233 HK  234 (279)
T ss_pred             EE
T ss_conf             87


No 65 
>pfam03502 Channel_Tsx Nucleoside-specific channel-forming protein, Tsx.
Probab=90.92  E-value=0.84  Score=21.89  Aligned_cols=49  Identities=18%  Similarity=0.250  Sum_probs=35.0

Q ss_pred             CCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECC------CCCCCCEEEEEEEEEEC
Q ss_conf             7752047997346610048867999999997505------65566226999998539
Q gi|254780598|r  155 TPIAIGGTAGVGVEVGGLSESLVARLEYRASKYS------KVEGFYNTISLGVGMKF  205 (205)
Q Consensus       155 ~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~------~~~~~~~~~~~G~~ykF  205 (205)
                      ..++.|...-.++-+ - +|+|++...|||.+=.      ..+..-....+-|+|||
T Consensus       205 ~~~s~g~~~~~~l~w-~-~~~~~~g~~~ry~~n~~~~~d~g~~~~g~~~y~~v~Y~F  259 (259)
T pfam03502       205 NRTSNGGNGALGLYW-H-TDRWAVGYGYRYYDNKGQWKDLGQDSTGDGHYYSVGYKF  259 (259)
T ss_pred             CCCCCCCCEEEEEEE-C-CCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECC
T ss_conf             877665210278997-4-775898888787633564335775543414999998529


No 66 
>pfam02264 LamB LamB porin. Maltoporin (LamB protein) forms a trimeric structure which facilitates the diffusion of maltodextrins across the outer membrane of Gram-negative bacteria. The membrane channel is formed by an antiparallel beta-barrel.
Probab=90.24  E-value=0.97  Score=21.56  Aligned_cols=110  Identities=11%  Similarity=-0.032  Sum_probs=62.4

Q ss_pred             CEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCC----CCCEEEEEEE
Q ss_conf             379984510132155566662122321489998975431276778988544776444313455567----7520479973
Q gi|254780598|r   90 CIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEIT----PIAIGGTAGV  165 (205)
Q Consensus        90 ~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~----~~~~g~~~G~  165 (205)
                      +|.++-.+-+................| .++.+|+-|.+++.+-+-..+||...+.+........+    +.-..+++-+
T Consensus       273 ~~~~~~~~~yq~~~d~~~~~~~~~~~~-~s~~vRP~y~~~~~~~~~~E~Gy~~~~~~~~~~~~~~~~~~~K~TlApt~s~  351 (399)
T pfam02264       273 NWEVAHALVYQRGNDIYSTADKGSYEW-YTVVVRPMYKWNQIMSTAFEGGYFNVKNKSTGGNDREDNGQYKLTLAQTWKV  351 (399)
T ss_pred             CEEEEEEEEEEECCCCCCCCCCCCEEE-EEEEEEEEEEECCCEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCC
T ss_conf             753605355674234367778887479-9998677379657258999988988723667886435478368999640312


Q ss_pred             EEEEECCCCCEEEEEEEEEEECCC---------CCCCCEEEEEEEEE
Q ss_conf             466100488679999999975056---------55662269999985
Q gi|254780598|r  166 GVEVGGLSESLVARLEYRASKYSK---------VEGFYNTISLGVGM  203 (205)
Q Consensus       166 Gvey~~it~~~~~r~EY~y~df~~---------~~~~~~~~~~G~~y  203 (205)
                      |-++ .  .+=.+|+=..|.+..+         .+.+.+++.+|+-.
T Consensus       352 g~~f-~--sRPelR~yaTy~~w~~~~~~~~~~~~~~~~~~~~fGvQ~  395 (399)
T pfam02264       352 GSSF-W--ARPEIRFYATYLKWDEKEGKGNTFDSGNDDDEWTFGAQM  395 (399)
T ss_pred             CCCC-C--CCCEEEEEEEEEECCCHHHCCCCCCCCCCCCCEEEEEEE
T ss_conf             7987-7--895799999997135012033665778877878999999


No 67 
>PRK09934 putative fimbrial protein; Provisional
Probab=90.17  E-value=0.22  Score=24.91  Aligned_cols=23  Identities=22%  Similarity=0.205  Sum_probs=15.4

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             94437899999999984100002
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQA   23 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~A   23 (205)
                      |||++|++.++++..+.+.+|.+
T Consensus         1 mkk~~l~~~~~l~~~~~~~aa~~   23 (171)
T PRK09934          1 MRRVFIAIFCGLLWSPLSQAASP   23 (171)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             92689999999998634421135


No 68 
>TIGR01414 autotrans_barl outer membrane autotransporter barrel domain; InterPro: IPR006315   The secretion of protein products occurs by a number of different pathways in bacteria and several secretion mechanisms have been described for Gram-negative bacteria , an increasing number employ a highly efficient but simple mechanism first described for the immunoglobulin A1 (IgA1) proteases , .    The autotransporter secretion pathway  is a distinct secretion mechanism, in which the protein moiety mediating export through the outer membrane is contained within the precursor of the secreted protein itself. Autotransporters have been implicated as important or putative virulence factors  such as mediating adhesion to host cells or by mediating actin-promoted bacterial mobility .   The key feature of an autotransporter is that it contains all the information for secretion in the precursor of the secreted protein itself . Autotransporters comprise three functional domains: 1) an N-terminal targeting domain (amino-terminal leader sequence) that functions as a signal peptide to mediate targeting to and translocation across the inner membrane 2) a C-terminal translocation domain (carboxy-terminal) that forms a beta-barrel pore to allow the secretion  of 3) the passenger domain, the secreted mature protein .   This entry shows the C-terminal autotransporter domain, it is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus.; GO: 0019867 outer membrane.
Probab=89.68  E-value=1.1  Score=21.31  Aligned_cols=134  Identities=21%  Similarity=0.168  Sum_probs=86.6

Q ss_pred             CCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCC-----CC----CC--CCCEEEEEEEEEE---EEE----CC
Q ss_conf             6777776026899854640483799845101321555666-----62----12--2321489998975---431----27
Q gi|254780598|r   69 GEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLAD-----NI----HS--LHGIGGSLRIRGG---YEV----SD  130 (205)
Q Consensus        69 ~~~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~-----~~----~~--~~~~~~~~~~r~G---y~~----~~  130 (205)
                      ......++...+.+||++... +.+-....+.+.......     ..    ..  ...+...+..+++   +.+    ..
T Consensus       294 ~~~~~~g~~~~~~~g~~~~~~-~~~~P~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  372 (454)
T TIGR01414       294 GKYNSNGLGASLEAGYRYNLG-WYLEPQAQLSYLGVSGDDYKESNGTRVLGGGDSGDSLQGRLGLRLGYKASQFDLGTGR  372 (454)
T ss_pred             CCCCCCCEEEEEECCCEEEEE-EEEECCEEEEEEEECCCCEECCCCEEEEECCCCCCCEEEECCEEECCCHHHHHCCCCC
T ss_conf             444333114543114011004-6750003688874056420104653676056653200000010000100000003673


Q ss_pred             CEEEEEEEEEEEEEE--EEC------CCCCCCCCCCEEEEEEEEEEEECCC-CCEEEEEEEEEEECCCCCCCCEEEEEEE
Q ss_conf             677898854477644--431------3455567752047997346610048-8679999999975056556622699999
Q gi|254780598|r  131 SLLLYATVGPDVAQK--YET------GKAGEITPIAIGGTAGVGVEVGGLS-ESLVARLEYRASKYSKVEGFYNTISLGV  201 (205)
Q Consensus       131 ~~l~Y~~~G~a~~~~--~~~------~~~~~~~~~~~g~~~G~Gvey~~it-~~~~~r~EY~y~df~~~~~~~~~~~~G~  201 (205)
                      .+-+|....+.....  +..      ............+.+++|++. .++ +++.+.+++.+....+... ..+..+|+
T Consensus       373 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~g~  450 (454)
T TIGR01414       373 ALKPYLKANWLHEFGGLGGNGVLVNGGVTLRNDGSGTRGELGLGVNA-SLKSPNLSLYLDVDYQLGGKGET-PWSGNLGV  450 (454)
T ss_pred             EEEEEEEEEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEECCEEE-EECCCCEEEEEEEECCCCCCCCC-CEEEEEEE
T ss_conf             22146777653101477753157516520024444422443124024-43364215765310013665333-20355535


Q ss_pred             EEEC
Q ss_conf             8539
Q gi|254780598|r  202 GMKF  205 (205)
Q Consensus       202 ~ykF  205 (205)
                      .|+|
T Consensus       451 ~~~~  454 (454)
T TIGR01414       451 RYSF  454 (454)
T ss_pred             EEEC
T ss_conf             7739


No 69 
>PRK10177 hypothetical protein; Provisional
Probab=89.25  E-value=1.2  Score=21.14  Aligned_cols=49  Identities=10%  Similarity=0.059  Sum_probs=33.7

Q ss_pred             CCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             56775204799734661004886799999999750565566226999998539
Q gi|254780598|r  153 EITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       153 ~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      +++.-+.=..+-+|+.|- --|=+++.+|++.-+   -....+.+.+.++|||
T Consensus       246 ~~~~q~nP~A~T~GlnYT-PvPLvT~~a~~k~G~---~g~~dt~~~l~lnYr~  294 (452)
T PRK10177        246 SGTGYHNPVALSLGLNYT-PVPLVTVTAQHKQGE---SGVSQNNLGLNLNYRF  294 (452)
T ss_pred             CCCCCCCCHHEEECCCCC-CCCCEEEECCEECCC---CCCCCCEEEEEEEEEC
T ss_conf             998766964178114540-521289610002167---8998755757998745


No 70 
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=88.70  E-value=0.79  Score=22.01  Aligned_cols=19  Identities=26%  Similarity=0.382  Sum_probs=10.0

Q ss_pred             CHHHHHHHHHHHHHHHHCCC
Q ss_conf             94437899999999984100
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCS   20 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~   20 (205)
                      |||++++ .++++.|+++++
T Consensus         2 m~~~l~~-~~~~~~L~GC~~   20 (238)
T PRK12696          2 IRKLLAA-SCAVLLLSGCNA   20 (238)
T ss_pred             HHHHHHH-HHHHHHHHCCCC
T ss_conf             5899999-999999516568


No 71 
>PRK13513 putative outer membrane receptor; Provisional
Probab=88.14  E-value=1.4  Score=20.73  Aligned_cols=42  Identities=17%  Similarity=0.092  Sum_probs=23.9

Q ss_pred             EEEEEEEEECCCCCEEEEEE--------EEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             99734661004886799999--------999750565566226999998539
Q gi|254780598|r  162 TAGVGVEVGGLSESLVARLE--------YRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       162 ~~G~Gvey~~it~~~~~r~E--------Y~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      ++-+.+.| .++++|.+.+.        |++...+... .--++.+|+.|+|
T Consensus       611 ~~dl~~~y-~~~~~~~l~~~v~NLfDk~Y~~~~~~~~~-~GR~~~~~~~y~F  660 (660)
T PRK13513        611 FVDLGANY-QLTKELRLMGGVYNLLDKRVDIDVNDKVL-DGRRYMVGASYDF  660 (660)
T ss_pred             EEEEEEEE-EECCCEEEEEEEEECCCCCCCCCCCCCCC-CCCEEEEEEEEEC
T ss_conf             99989999-97999899999990559941102488758-9909999999989


No 72 
>COG5571 Autotransporter protein or domain, integral membrane beta-barrel involved in protein secretion [Cell motility and secretion]
Probab=88.01  E-value=0.22  Score=24.85  Aligned_cols=133  Identities=19%  Similarity=0.129  Sum_probs=72.0

Q ss_pred             CCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCC-----CC-----CCCCE---EEEEEEEEEEEECCCEEE
Q ss_conf             667777760268998546404837998451013215556666-----21-----22321---489998975431276778
Q gi|254780598|r   68 FGEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADN-----IH-----SLHGI---GGSLRIRGGYEVSDSLLL  134 (205)
Q Consensus        68 ~~~~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~-----~~-----~~~~~---~~~~~~r~Gy~~~~~~l~  134 (205)
                      .++.....++.++.+||+|-++.++.|.-+++.|...+.+..     ..     ....|   ..++.-|+-+..++ +-|
T Consensus        81 ~get~~~~~t~~L~~Gyef~~~~l~tGpvA~L~~~~t~v~~y~E~~~ssTal~f~dq~~~S~~sslGwrlr~~~~~-~~P  159 (239)
T COG5571          81 LGETNAESWTARLSAGYEFPFGELRTGPVAGLHYDKTTVSGYNEQNASSTALGFTDQLWHSLVSSLGWRLRLRLAD-LQP  159 (239)
T ss_pred             CCCCCHHHHHHHCCCCCCCCCCCEEEECCHHCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEECCCCC-CCC
T ss_conf             3788723122210133554322123201000000443001212246641101566511566530354677322244-440


Q ss_pred             EEEEEEEEEEEEE-------------CCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEE
Q ss_conf             9885447764443-------------134555677520479973466100488679999999975056556622699999
Q gi|254780598|r  135 YATVGPDVAQKYE-------------TGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGV  201 (205)
Q Consensus       135 Y~~~G~a~~~~~~-------------~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~  201 (205)
                      |+..=|-.---+.             ..-..+.+++-.  -+=+|+++ .+++++..-++---.+-. .+...-..++||
T Consensus       160 yaqi~y~~ef~~d~~~aqagL~~m~~~~~~~~qd~nw~--~i~~Ga~~-~l~~~i~~~a~~~q~~~~-t~~n~~~ytLgv  235 (239)
T COG5571         160 YAQIRYVREFGDDIWKAQAGLSRMTATNVLPSQDKNWV--DITAGADF-LLNSSIGAFAAASQRENS-TENNQYLYTLGV  235 (239)
T ss_pred             EEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH--HEEEEEEE-CCCCHHHHHHHHHHHHCC-CCCCCCEEEEEE
T ss_conf             14565787650123656410246600243566676641--30441012-234106899876444305-666631057753


Q ss_pred             EEEC
Q ss_conf             8539
Q gi|254780598|r  202 GMKF  205 (205)
Q Consensus       202 ~ykF  205 (205)
                      +-||
T Consensus       236 s~~F  239 (239)
T COG5571         236 SARF  239 (239)
T ss_pred             ECCC
T ss_conf             0239


No 73 
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=87.73  E-value=0.34  Score=23.92  Aligned_cols=28  Identities=29%  Similarity=0.345  Sum_probs=17.3

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             9443789999999998410000246654356
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRAH   31 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~   31 (205)
                      |||+++++   +++|+++++|+|++.+...+
T Consensus         2 mk~l~~~~---~~~l~~~~~a~A~~~P~~s~   29 (293)
T PRK13861          2 IKKLFLTL---ACLLFAAIGALAEDTPAAGK   29 (293)
T ss_pred             CHHHHHHH---HHHHHHHHHHHHHHCCCCCC
T ss_conf             08999999---99998612667875698888


No 74 
>pfam06082 DUF940 Bacterial putative lipoprotein (DUF940). This family consists of hypothetical bacterial proteins several of which are described as putative lipoproteins.
Probab=86.57  E-value=1.1  Score=21.26  Aligned_cols=42  Identities=24%  Similarity=0.194  Sum_probs=23.8

Q ss_pred             EEEEEEECCCCCEEEEEEEEEEECCCC----CCC-CEEEEEEEEEEC
Q ss_conf             734661004886799999999750565----566-226999998539
Q gi|254780598|r  164 GVGVEVGGLSESLVARLEYRASKYSKV----EGF-YNTISLGVGMKF  205 (205)
Q Consensus       164 G~Gvey~~it~~~~~r~EY~y~df~~~----~~~-~~~~~~G~~ykF  205 (205)
                      =+|+||....++|.+++||.=.++...    ..+ .+.+.+|+.||+
T Consensus       168 FgGiey~~p~~~l~lk~Eyd~~~y~~e~~~~~~~~~SpfNfGl~Y~l  214 (661)
T pfam06082       168 FGGVEYQTPWEPLRLKAEYDGNDYSAEFAGRGLEQDSPFNFGAVYRL  214 (661)
T ss_pred             CCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEC
T ss_conf             34159856888808999976765444445677476886148899982


No 75 
>pfam11924 DUF3442 Protein of unknown function (DUF3442). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 334 to 948 amino acids in length.
Probab=86.45  E-value=1.8  Score=20.20  Aligned_cols=49  Identities=14%  Similarity=0.101  Sum_probs=33.7

Q ss_pred             CCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             56775204799734661004886799999999750565566226999998539
Q gi|254780598|r  153 EITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       153 ~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      ..+.......+-+|++| -..|.+++.++|+..   +...+...+.++++|+|
T Consensus       201 ~~~~q~~p~a~t~gl~y-tP~pllt~~~~~~~~---~~~~~~t~~~l~~ny~l  249 (280)
T pfam11924       201 SGNLQKDPHAVTLGLNY-TPVPLLTVGADYRDG---KGGQDDTFVGLGLNYRL  249 (280)
T ss_pred             CCCCCCCCCEEEEEEEE-CCCCCEEEEEEEEEC---CCCCCCCEEEEEEEECC
T ss_conf             66555686117998884-036877998736806---89986668999999778


No 76 
>TIGR03014 EpsL exopolysaccharide biosynthesis operon protein EpsL. The epsL gene is described as a component of the methanolan exopolysaccharide biosynthesis operon in Methylobacillus sp strain 12S, although no other information regarding its possible function is suggested. Homologs of this gene are found in several other exopolysaccharide operons in a small number of species. These operons contain a subset of the methanolan operon genes by homology and synteny, including the epsH gene which is proposed to act as an "exosortase" directing proteins with a C-terminal tag (PEP-CTERM) to the exopolysaccharide layer. Each of the genomes in which these genes and epsL are found also encode genes with these C-terminal tags.
Probab=85.28  E-value=2.1  Score=19.88  Aligned_cols=43  Identities=9%  Similarity=0.177  Sum_probs=20.4

Q ss_pred             EEEEEEEEECCCCCEEEEEEEEEEECC----CCCCCCEEEEEEEEEEC
Q ss_conf             997346610048867999999997505----65566226999998539
Q gi|254780598|r  162 TAGVGVEVGGLSESLVARLEYRASKYS----KVEGFYNTISLGVGMKF  205 (205)
Q Consensus       162 ~~G~Gvey~~it~~~~~r~EY~y~df~----~~~~~~~~~~~G~~ykF  205 (205)
                      .+++++.| .+...+.+.+.|+|.+-.    ..+-+.|.+.|.+-+.|
T Consensus       335 ~~~l~~~Y-~p~R~l~ls~~~~~~~RdSN~~~~~Yd~n~~~ls~~~tf  381 (381)
T TIGR03014       335 SGSLSLDW-SPVRAVRISAAFQREKRDSNSDGFDFDSNSVSVSATLTF  381 (381)
T ss_pred             EEEEEEEE-EEEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEC
T ss_conf             87789998-320238887579985245765557512323899999989


No 77 
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=85.05  E-value=0.29  Score=24.27  Aligned_cols=67  Identities=21%  Similarity=0.257  Sum_probs=42.4

Q ss_pred             CCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEE---------EECCCCCEEEEEEEEEEECC--CCCCCCEEEE
Q ss_conf             767789885447764443134555677520479973466---------10048867999999997505--6556622699
Q gi|254780598|r  130 DSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVE---------VGGLSESLVARLEYRASKYS--KVEGFYNTIS  198 (205)
Q Consensus       130 ~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gve---------y~~it~~~~~r~EY~y~df~--~~~~~~~~~~  198 (205)
                      ..++||+.+-         .+.-..+.+...-..|+|+-         |++...+++||+||+|+--+  +.-...|.+-
T Consensus       910 QtL~PYa~vq---------~n~wr~d~~~g~~~aGVGvrW~~W~~e~rYNA~~~~~~V~~EyQ~tl~~~~~~~~~~n~~~  980 (987)
T PRK09782        910 QTLEPYAHVQ---------DNGYRDKGTQGAQLGGVGVRWNIWTGETHYNAWPHKVSVGVEYQHTFKAINQRNGERNNAF  980 (987)
T ss_pred             CEECCEEEEC---------CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCCE
T ss_conf             4532314440---------6651001224654432215776503786445677540330538988998875225545642


Q ss_pred             EEEEEEC
Q ss_conf             9998539
Q gi|254780598|r  199 LGVGMKF  205 (205)
Q Consensus       199 ~G~~ykF  205 (205)
                      +|++++|
T Consensus       981 ~~~~~~~  987 (987)
T PRK09782        981 LTIGVHW  987 (987)
T ss_pred             EEEECCC
T ss_conf             6741469


No 78 
>pfam07424 TrbM TrbM. This family contains the bacterial protein TrbM (approximately 180 residues long). In Comamonas testosteroni T-2, TrbM is derived from the IncP1beta plasmid pTSA, which encodes the widespread genes for p-toluenesulfonate (TSA) degradation.
Probab=83.76  E-value=0.68  Score=22.34  Aligned_cols=25  Identities=40%  Similarity=0.402  Sum_probs=16.2

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             94437899999999984100002466
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADP   26 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~   26 (205)
                      |||++++++++..++++. +|++.|+
T Consensus         1 MKK~ll~~al~~~~~~s~-~A~~~d~   25 (189)
T pfam07424         1 MKKILLAVALAFGMFGSA-SAQKLDV   25 (189)
T ss_pred             CCHHHHHHHHHHHHHHCC-CCCHHHH
T ss_conf             920179999999997147-6420034


No 79 
>pfam12094 DUF3570 Protein of unknown function (DUF3570). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 396 to 444 amino acids in length.
Probab=83.15  E-value=2.6  Score=19.38  Aligned_cols=76  Identities=9%  Similarity=0.011  Sum_probs=41.1

Q ss_pred             EEEECCCEEEEEEEEEEEEEEEECCC-----------------CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEC
Q ss_conf             54312767789885447764443134-----------------5556775204799734661004886799999999750
Q gi|254780598|r  125 GYEVSDSLLLYATVGPDVAQKYETGK-----------------AGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKY  187 (205)
Q Consensus       125 Gy~~~~~~l~Y~~~G~a~~~~~~~~~-----------------~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df  187 (205)
                      .=.++.++++=...++...+--.+.+                 .+.-.+++.-..+++...| +|.++..+|++|||.. 
T Consensus       210 SQVl~k~~~~~~n~~~~~~~GyLsdPYk~v~~~D~~~~~~~~~~E~rPd~R~k~~~~~r~~~-~l~~~~~l~~~YRyy~-  287 (407)
T pfam12094       210 TQVLTKNTLVQLNLEYSSSSGYLSDPYKVVSVVDSNGPAQLYLYENRPDTRTKQAVYLRAKY-YLPDRAALRFSYRYYS-  287 (407)
T ss_pred             EEEECCCEEEEEEEEEEECCEECCCCCEEEEEECCCCCCCCCCHHCCCCHHHHHHHHHHEEE-ECCCCCEEEEEEEEEE-
T ss_conf             89955151999988788702363798179997347764122212119862332010102202-0587725678778884-


Q ss_pred             CCCCCCCEEEEEEEE
Q ss_conf             565566226999998
Q gi|254780598|r  188 SKVEGFYNTISLGVG  202 (205)
Q Consensus       188 ~~~~~~~~~~~~G~~  202 (205)
                      .+=.++.||+-+...
T Consensus       288 DdWgi~sHT~~~~~~  302 (407)
T pfam12094       288 DDWGITSHTLEAEYR  302 (407)
T ss_pred             CCCCCCEEEEEEEEE
T ss_conf             677751068616999


No 80 
>PRK13697 cytochrome c6; Provisional
Probab=83.09  E-value=0.8  Score=21.99  Aligned_cols=27  Identities=33%  Similarity=0.289  Sum_probs=19.1

Q ss_pred             CHHHHHHHHHHHHHHH--HCCCCCCCCCC
Q ss_conf             9443789999999998--41000024665
Q gi|254780598|r    1 MQKLFLAVGVSSLALA--SFCSAQAADPV   27 (205)
Q Consensus         1 Mkk~~la~av~~lal~--~~~~A~Aad~~   27 (205)
                      |||++..+.++.+.+.  ..++|+|+|+.
T Consensus         1 Mk~l~~~~l~~~~~~~~~~~~pA~Aad~~   29 (111)
T PRK13697          1 MKKILKLVLLTLLLLTFAFTSPAFAADAA   29 (111)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             97899999999999999803554441675


No 81 
>pfam05079 DUF680 Protein of unknown function (DUF680). This family contains several uncharacterized proteins which seem to be found exclusively in Rhizobium loti.
Probab=83.09  E-value=0.73  Score=22.18  Aligned_cols=24  Identities=33%  Similarity=0.268  Sum_probs=17.2

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             944378999999999841000024665
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPV   27 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~   27 (205)
                      |||+.|+++.   .|.+.++|||....
T Consensus         1 M~KiaLtaAA---iL~asgsAFAGSD~   24 (73)
T pfam05079         1 MKKIALTAAA---ILAASGSAFAGSDN   24 (73)
T ss_pred             CCHHHHHHHH---HHHHCCCCCCCCCC
T ss_conf             9224899999---99970652213565


No 82 
>pfam07996 T4SS Type IV secretion system proteins. Members of this family are components of the type IV secretion system. They mediate intracellular transfer of macromolecules via a mechanism ancestrally related to that of bacterial conjugation machineries.
Probab=82.95  E-value=0.86  Score=21.81  Aligned_cols=26  Identities=31%  Similarity=0.351  Sum_probs=18.3

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             944378999999999841000024665
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPV   27 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~   27 (205)
                      |||.++++++ +++++.+++|+|+..+
T Consensus         1 Mkk~~~~~~~-~~~l~~~~~a~a~GIP   26 (217)
T pfam07996         1 MKKKLIILAL-ALALLAASPAAAAGIP   26 (217)
T ss_pred             CCHHHHHHHH-HHHHHCCCHHHCCCCC
T ss_conf             9337999999-9998477777608998


No 83 
>PRK09701 D-allose transporter subunit; Provisional
Probab=82.21  E-value=0.96  Score=21.58  Aligned_cols=27  Identities=26%  Similarity=0.096  Sum_probs=21.9

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             944378999999999841000024665
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPV   27 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~   27 (205)
                      |||++..++.++++++.+++|.|+.-.
T Consensus         1 m~k~~~~~~~~~~~~~~~~~a~a~~~i   27 (311)
T PRK09701          1 MNKYLKYFSGTLVGLMLSTSAFAAAEY   27 (311)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf             936999999999999988877436849


No 84 
>PRK00031 lolA outer-membrane lipoprotein carrier protein; Reviewed
Probab=81.88  E-value=0.79  Score=22.02  Aligned_cols=25  Identities=36%  Similarity=0.367  Sum_probs=16.5

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9443789999999998410000246
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAAD   25 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad   25 (205)
                      |||+++++.+.++++++.+.|.+.+
T Consensus         1 mk~~~~~~~~~~~l~~~~~~A~~~~   25 (201)
T PRK00031          1 MKKLLIAALLAAALVASSAFADAAS   25 (201)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf             9159999999999877664502899


No 85 
>pfam11231 DUF3034 Protein of unknown function (DUF3034). This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=81.73  E-value=2.9  Score=19.08  Aligned_cols=57  Identities=23%  Similarity=0.140  Sum_probs=30.7

Q ss_pred             EECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEE
Q ss_conf             3127677898854477644431345556775204799734661004886799999999
Q gi|254780598|r  127 EVSDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRA  184 (205)
Q Consensus       127 ~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y  184 (205)
                      .++.++|+=+++=+..++...=-.++.+.....-+..-+-+-+ +++++|.+.+|||.
T Consensus       148 ~~g~nll~N~TlR~TkANQ~GLLGFGg~~~d~y~~~~E~S~a~-ll~~~~avG~EYR~  204 (257)
T pfam11231       148 LFGRNLLVNGTLRATKANQLGLLGFGGDRNDSYELQPEGSVAV-LLSRNLAVGVEYRQ  204 (257)
T ss_pred             CCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEE-EECCCEEEEEEEEC
T ss_conf             2560179987886502431340112788898606867148999-83586488777202


No 86 
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=81.36  E-value=1.7  Score=20.32  Aligned_cols=26  Identities=38%  Similarity=0.289  Sum_probs=20.6

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             944378999999999841000024665
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPV   27 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~   27 (205)
                      |+|+...+.+|.|+|+++ +|+|++..
T Consensus         1 MrK~tal~~AS~LaLGs~-~a~Aa~~~   26 (162)
T PRK12751          1 MRKVTTLVMASMFVLGSS-AAFAADNT   26 (162)
T ss_pred             CHHHHHHHHHHHHHHHHH-HHHHCCCC
T ss_conf             917899999999999999-99874378


No 87 
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=81.33  E-value=1.5  Score=20.53  Aligned_cols=24  Identities=33%  Similarity=0.333  Sum_probs=19.5

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             944378999999999841000024
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAA   24 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aa   24 (205)
                      |||+...+.+|.|++++.+.|.++
T Consensus         1 MRklTA~vlAStLalgs~s~aa~~   24 (166)
T PRK10363          1 MRIVTAAVMASTLAVSSLSHAAEV   24 (166)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             906999999999999899986245


No 88 
>pfam09411 PagL Lipid A 3-O-deacylase (PagL). PagL is an outer membrane protein with lipid A 3-O-deacylase activity. It forms an 8 stranded beta barrel structure.
Probab=81.13  E-value=3.1  Score=18.97  Aligned_cols=71  Identities=20%  Similarity=0.236  Sum_probs=38.4

Q ss_pred             EEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC-----CCCCEEEEEEEEEEC
Q ss_conf             77898854477644431345556775204799734661004886799999999750565-----566226999998539
Q gi|254780598|r  132 LLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKV-----EGFYNTISLGVGMKF  205 (205)
Q Consensus       132 ~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~-----~~~~~~~~~G~~ykF  205 (205)
                      .-+|..+|....=.+.+.....+=.+..-+...+|+-| .+.+++  +++|||..+++.     .-.+|++.+-++|+|
T Consensus        64 ~~~f~E~GiG~~~~s~~~~~~~~lg~~~~F~~~~g~g~-~~~~~~--~~~~~~~H~SNa~i~~~N~G~~~~~l~~~~~F  139 (139)
T pfam09411        64 FKPFVEAGIGVALLSRTRDEDKDLGTRFQFRDQLGAGY-QFGGRP--RVGYRYQHYSNAGIKDPNPGLNSVGLRLGYSF  139 (139)
T ss_pred             CCEEEEEEEEEEEECCCCCCCCCCCCEEEEECCEEEEE-EECCCC--EEEEEEEEECCCCCCCCCCCCCEEEEEEEEEC
T ss_conf             47389987654886152138986666087200188899-976886--58999999517887999889015879998439


No 89 
>PRK09733 putative fimbrial protein; Provisional
Probab=80.07  E-value=0.95  Score=21.60  Aligned_cols=23  Identities=22%  Similarity=0.260  Sum_probs=15.4

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             94437899999999984100002466
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADP   26 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~   26 (205)
                      |||.+++++++++   ++++++|++-
T Consensus         2 mKk~ll~~~~~~~---~s~~~~A~~~   24 (181)
T PRK09733          2 FKKSLLVAGVAMI---LSNNVFADEG   24 (181)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHCC
T ss_conf             0688999999999---8666576448


No 90 
>PRK12698 flgH flagellar basal body L-ring protein; Reviewed
Probab=79.99  E-value=3.4  Score=18.76  Aligned_cols=13  Identities=23%  Similarity=0.161  Sum_probs=9.2

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             9443789999999
Q gi|254780598|r    1 MQKLFLAVGVSSL   13 (205)
Q Consensus         1 Mkk~~la~av~~l   13 (205)
                      |||+++.+++..|
T Consensus         1 M~r~~l~~~~l~L   13 (224)
T PRK12698          1 MARYILLALALLL   13 (224)
T ss_pred             CHHHHHHHHHHHH
T ss_conf             9779999999998


No 91 
>pfam04234 CopC Copper resistance protein CopC. CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm.
Probab=79.69  E-value=2.4  Score=19.56  Aligned_cols=35  Identities=31%  Similarity=0.348  Sum_probs=24.8

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCC
Q ss_conf             94437899999999984100002-466543566666
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQA-ADPVRRAHHGGR   35 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~A-ad~~~~~~~~~~   35 (205)
                      ||++.+.+.+.++++..+.+|+| +.+....|....
T Consensus         1 M~~~~~~~~~~~~~~~~~~~A~AH~~l~~s~P~~ga   36 (120)
T pfam04234         1 MRRLLLAAALLALLLLLAGAASAHAKLVSSTPAAGA   36 (120)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             977999999999998740321315442432799949


No 92 
>PRK13893 conjugal transfer protein TrbM; Provisional
Probab=79.22  E-value=1.1  Score=21.35  Aligned_cols=26  Identities=35%  Similarity=0.379  Sum_probs=18.2

Q ss_pred             CHHHHHHHHHHHHHHH-HCCCCCCCCC
Q ss_conf             9443789999999998-4100002466
Q gi|254780598|r    1 MQKLFLAVGVSSLALA-SFCSAQAADP   26 (205)
Q Consensus         1 Mkk~~la~av~~lal~-~~~~A~Aad~   26 (205)
                      |||.++.+++.++++. +++++.|.|+
T Consensus         1 m~kk~l~~a~~~~a~~~~~g~~~a~d~   27 (193)
T PRK13893          1 MKKKLLALAAAVAALGSAAGTASAQDV   27 (193)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf             961488999999997047564414355


No 93 
>pfam04076 BOF Bacterial OB fold (BOF) protein. Proteins in this family form an OB-fold. Analysis of the predicted binding site of BOF family proteins implies that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localize in the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesized for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the BOF ligand-binding site may be associated with the presence of BOF proteins in mobile genetic elements and their potential role in bacterial pathogenicity.
Probab=79.07  E-value=1.6  Score=20.50  Aligned_cols=21  Identities=52%  Similarity=0.521  Sum_probs=12.5

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9443789999999998410000246
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAAD   25 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad   25 (205)
                      |||+++++++++   ++ .+++|++
T Consensus         1 MKK~~i~~~~~l---~s-~~~~Aa~   21 (126)
T pfam04076         1 MKKLAIALASAL---AS-TSALAAD   21 (126)
T ss_pred             CCHHHHHHHHHH---HH-CHHHHHH
T ss_conf             956899999999---84-6787976


No 94 
>PRK03577 acid shock protein precursor; Provisional
Probab=78.97  E-value=1.5  Score=20.65  Aligned_cols=33  Identities=24%  Similarity=0.202  Sum_probs=22.0

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             94437899999999984100002466543566666
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRAHHGGR   35 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~~~~~   35 (205)
                      |||+|..+-.  ..++.++.++|++.....+..+.
T Consensus         1 MkKvLalvva--A~mGLSSvafAaeT~~~a~~a~~   33 (102)
T PRK03577          1 MKKVLALVVA--AAMGLSSAAFAAETATTAAPAAT   33 (102)
T ss_pred             CCHHHHHHHH--HHHCHHHHHHHHCCCCCCCCCCC
T ss_conf             9058999999--98241277787514667887764


No 95 
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=78.47  E-value=3.8  Score=18.50  Aligned_cols=20  Identities=25%  Similarity=0.388  Sum_probs=7.5

Q ss_pred             CHHHHHHHHHHHH-HHHHCCC
Q ss_conf             9443789999999-9984100
Q gi|254780598|r    1 MQKLFLAVGVSSL-ALASFCS   20 (205)
Q Consensus         1 Mkk~~la~av~~l-al~~~~~   20 (205)
                      ||+++....+.++ ++.+.|+
T Consensus         3 ~~t~~Rl~~~~~~~~ll~GCa   23 (230)
T PRK12700          3 LKTVLRLPVCAALLALAAGCA   23 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHCCC
T ss_conf             588999999999999974446


No 96 
>COG3137 Putative salt-induced outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=77.32  E-value=4.1  Score=18.32  Aligned_cols=112  Identities=17%  Similarity=0.130  Sum_probs=47.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCE
Q ss_conf             42100012233334466777776026899854640483799845101321555666621223214899989754312767
Q gi|254780598|r   53 FNGPYAGLSALYNGSFGEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDSL  132 (205)
Q Consensus        53 w~G~y~g~~~g~~~~~~~~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~~  132 (205)
                      |.|   .+..||....++........-+-.=|+-- ..--++.++++...   ..+...++..+  .+..|--|.+.|+.
T Consensus        50 w~g---sve~Gy~a~sGNT~sesLnarlk~~y~~g-~~~a~~lw~n~sn~---s~n~e~s~~ry--~~~~~sry~l~~~~  120 (262)
T COG3137          50 WEG---SVEAGYLAQSGNTTSESLNARLKMTYYGG-QITAYSLWGNASNT---SSNDERSSERY--AQGGRSRYNLTDYD  120 (262)
T ss_pred             CCC---CCCEEEEECCCCCCCHHCCCCCEEEEECC-CCCHHHHHHHHHCC---CCCCHHHHHHH--HHCCEEEECCCCCE
T ss_conf             666---52300251368853210022100155157-64108876544126---65431357887--53021222356622


Q ss_pred             EEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEE
Q ss_conf             7898854477644431345556775204799734661004886799999
Q gi|254780598|r  133 LLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLE  181 (205)
Q Consensus       133 l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~E  181 (205)
                      ++|+..=+-  .-+..  .   -+.+.-.+.|.|-++ +-+|.+++|.|
T Consensus       121 y~~Gqf~~l--tdRy~--~---Y~~~~tlt~GyG~qf-~ng~~~sl~~e  161 (262)
T COG3137         121 YLFGQFSWL--TDRYN--G---YDRRDTLTAGYGRQF-LNGPVHSLRFE  161 (262)
T ss_pred             EEEEEEECH--HHHHC--C---CCCCCEEECCCCEEE-ECCCCEEEEEE
T ss_conf             676322210--12321--3---111121203443243-04872478984


No 97 
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed
Probab=76.18  E-value=1.9  Score=20.04  Aligned_cols=25  Identities=32%  Similarity=0.305  Sum_probs=16.7

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             94437899999999984100002466
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADP   26 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~   26 (205)
                      |||++..+.+ ++++..+++|+|++-
T Consensus         1 mk~~~~~~~~-~~~~~~~~~~~a~~~   25 (247)
T PRK09495          1 MKSVLKVSLA-ALTLAFAVSSHAADK   25 (247)
T ss_pred             CHHHHHHHHH-HHHHHHHHHHHHCCC
T ss_conf             9779999999-999999876651499


No 98 
>COG4571 OmpT Outer membrane protease [Cell envelope biogenesis, outer membrane]
Probab=75.94  E-value=4.5  Score=18.11  Aligned_cols=47  Identities=15%  Similarity=0.133  Sum_probs=32.2

Q ss_pred             CEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC-----------------------CCCCEEEEEEEEEEC
Q ss_conf             204799734661004886799999999750565-----------------------566226999998539
Q gi|254780598|r  158 AIGGTAGVGVEVGGLSESLVARLEYRASKYSKV-----------------------EGFYNTISLGVGMKF  205 (205)
Q Consensus       158 ~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~-----------------------~~~~~~~~~G~~ykF  205 (205)
                      ..=+.+++-+-| .+|+|-.+-+|--|.+...-                       +....++++|+-|||
T Consensus       245 s~yy~~~i~~GY-y~t~nak~fve~ay~k~~~~kG~tqt~d~~g~t~~~~~d~aGi~~~~~tvt~Glky~F  314 (314)
T COG4571         245 SRYYSVVINAGY-YVTENAKVFVEGAYNKVTEGKGGTQTYDKAGDTSDYGGDAAGIENYNYTVTAGLKYRF  314 (314)
T ss_pred             CCEEEEEEEEEE-EECCCCEEEEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECC
T ss_conf             834899873147-9867834999877777750568725675168636667753333333148998777619


No 99 
>PRK03641 hypothetical protein; Provisional
Probab=73.94  E-value=1.9  Score=20.09  Aligned_cols=27  Identities=22%  Similarity=0.071  Sum_probs=19.0

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             944378999999999841000024665435
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRA   30 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~   30 (205)
                      |||.+++   ++|++|.+.+++|+.+..+.
T Consensus         1 m~~~~i~---~llal~~S~~~~A~tL~lp~   27 (220)
T PRK03641          1 MKTGIVT---TLLALCLPVSVFATTLRLSP   27 (220)
T ss_pred             CCHHHHH---HHHHHHHHHHHHEEEEECCC
T ss_conf             9116999---99999862364504664798


No 100
>PRK12701 flgH flagellar basal body L-ring protein; Reviewed
Probab=73.93  E-value=5.2  Score=17.83  Aligned_cols=25  Identities=32%  Similarity=0.319  Sum_probs=16.7

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9443789999999998410000246
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAAD   25 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad   25 (205)
                      |+++.+++.+.+++|.+.|++....
T Consensus         1 m~r~~~~~~~la~~lL~GC~~~~~~   25 (230)
T PRK12701          1 MNRLNIAVSCLATALLFGCEALHPP   25 (230)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             9258999999999997556688999


No 101
>pfam04575 DUF560 Protein of unknown function (DUF560). Family of hypothetical bacterial proteins.
Probab=73.27  E-value=5.4  Score=17.74  Aligned_cols=113  Identities=14%  Similarity=0.042  Sum_probs=56.6

Q ss_pred             CCCCCCEEEEEEEEEEECCC--EEEEEEEEEEECCCCCCC-------------------------------CCCCCCCEE
Q ss_conf             77776026899854640483--799845101321555666-------------------------------621223214
Q gi|254780598|r   71 EAHHNAGGSIFAGYNVEDSC--IMYGVEGDVRYTVPVLAD-------------------------------NIHSLHGIG  117 (205)
Q Consensus        71 ~~~~~~~~G~~~GYn~q~~~--~V~G~e~d~~~~~~~~~~-------------------------------~~~~~~~~~  117 (205)
                      .+.+.....+.+||.++..+  +-++...+..+.+.+.-.                               .....+...
T Consensus        92 ~~yd~~~~r~~~G~~y~~~~~~~~~~P~~e~~~~g~~~y~~~~G~~~~~~~~l~~~~~~~~~~~~~~~~y~~~~~~dg~~  171 (301)
T pfam04575        92 KKYNELSVRASLGYGYKNAKQDVSVLPFVEKRWYGGDRYSWANGVRLEGSYWLSPKWQLSTALEYKQERYFERKHLDGNI  171 (301)
T ss_pred             CCCCHHHHCEEECEEECCCCCEEEEEEEEEEEECCCCHHHHCCCEEEEEEEECCCCCEEEEHHHHHHHHCCCCCCCCCCC
T ss_conf             54341221036240040677589997869999838970321456789999987947197321345665426010657621


Q ss_pred             EEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEE--EEEEECCCC
Q ss_conf             8999897543127677898854477644431345556775204799734661004886799999--999750565
Q gi|254780598|r  118 GSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLE--YRASKYSKV  190 (205)
Q Consensus       118 ~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~E--Y~y~df~~~  190 (205)
                      ..+.+-+-|..+++..+|+-+.+...+.+.    ...+....|..+|.+-|.   ...+++++.  |+..+|.+.
T Consensus       172 ~~~~~tl~~~~~~~~~~~~g~~~~~~~~~~----~~~sy~~~g~rlG~~~~~---~~gls~~l~~s~~~r~y~~~  239 (301)
T pfam04575       172 HFVSLTLIYLPNPSQYWFGGLDFYREDTRD----KADSYDRKGVRLGWGQEW---GGGLSTRLSASYAKRQYKDK  239 (301)
T ss_pred             EEEEEEEEEEECCCCEEEEEEEEEEECCCC----CHHHHHHCEEEEEEEEEE---CCCEEEEEEEEEEEEECCCC
T ss_conf             689999999938983999989998702456----101122123899999980---79888999999888504776


No 102
>PRK12450 foldase protein PrsA; Reviewed
Probab=73.07  E-value=2.3  Score=19.67  Aligned_cols=21  Identities=29%  Similarity=0.347  Sum_probs=14.6

Q ss_pred             CHHHHHHHH--HHHHHHHHCCCC
Q ss_conf             944378999--999999841000
Q gi|254780598|r    1 MQKLFLAVG--VSSLALASFCSA   21 (205)
Q Consensus         1 Mkk~~la~a--v~~lal~~~~~A   21 (205)
                      |||+++++.  +++++|+++++.
T Consensus         4 mKK~~~~~~~~~svl~LaAC~s~   26 (309)
T PRK12450          4 MNKLITGVVTLATVVTLSACQSS   26 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999999999999999860589


No 103
>PRK02889 tolB translocation protein TolB; Provisional
Probab=72.59  E-value=2.2  Score=19.74  Aligned_cols=24  Identities=38%  Similarity=0.216  Sum_probs=20.7

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             944378999999999841000024
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAA   24 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aa   24 (205)
                      |+|+.+.+.+++++++++++|+|.
T Consensus         4 ~~~l~~~~~~~~~l~~~~~~A~A~   27 (430)
T PRK02889          4 MTKLGLRALVASCLIAAGGAAHAQ   27 (430)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             998999999999998621020278


No 104
>PRK11260 cystine transporter subunit; Provisional
Probab=72.40  E-value=3.1  Score=19.00  Aligned_cols=26  Identities=12%  Similarity=0.063  Sum_probs=13.4

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             94437899999999984100002466
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADP   26 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~   26 (205)
                      +||++++++..+++.+...++.|++.
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~a~~~   30 (264)
T PRK11260          5 GRQALMGVMAVALVAGMSVKSFADEG   30 (264)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             79999999999999983576543424


No 105
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=72.39  E-value=3  Score=19.04  Aligned_cols=25  Identities=32%  Similarity=0.534  Sum_probs=14.8

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9443789999999998410000246
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAAD   25 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad   25 (205)
                      |||.++++++.+++..++|+....+
T Consensus         1 MKK~~la~~~~svl~LaaC~~~~~~   25 (287)
T PRK03095          1 MKKAMLALAATSVIALSACGTSSSD   25 (287)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             9078999999999999851689987


No 106
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=72.29  E-value=4.6  Score=18.08  Aligned_cols=21  Identities=48%  Similarity=0.517  Sum_probs=12.6

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9443789999999998410000246
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAAD   25 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad   25 (205)
                      |||++++++...  ++.  +|+|++
T Consensus         1 mkk~~~~~~~ll--ls~--~a~Aa~   21 (207)
T PRK10954          1 MKKIWLALAGMV--LAF--SASAAQ   21 (207)
T ss_pred             CCHHHHHHHHHH--HHH--HHHHHH
T ss_conf             915999999999--997--722503


No 107
>TIGR02953 penta_MxKDx pentapeptide MXKDX repeat protein; InterPro: IPR014299   Members of this protein family are small bacterial proteins, each with an N-terminal signal sequence followed by up to 11 imperfect repeats of a pentapeptide. The pentapeptide repeat is usually of the form Met-Xaa-Lys-Asp-Xaa..
Probab=72.18  E-value=2.7  Score=19.27  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHH--HHHHCCCCCCC-C
Q ss_conf             443789999999--99841000024-6
Q gi|254780598|r    2 QKLFLAVGVSSL--ALASFCSAQAA-D   25 (205)
Q Consensus         2 kk~~la~av~~l--al~~~~~A~Aa-d   25 (205)
                      |+|++++.+++|  .|+.+..|+|. |
T Consensus         1 ~~i~~~~~~a~f~~~l~~ap~A~AqnD   27 (89)
T TIGR02953         1 KRIVLAISAAAFSAGLSLAPAAFAQND   27 (89)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             879999999999999885105542157


No 108
>PRK10259 hypothetical protein; Provisional
Probab=70.74  E-value=3.3  Score=18.79  Aligned_cols=31  Identities=29%  Similarity=0.399  Sum_probs=21.1

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             94437899999999984100002466543566
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRAHH   32 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~~   32 (205)
                      ||.+-..+++.+|...++ .++||+++...+.
T Consensus         1 MK~ik~~~aa~aLs~~SF-gsfAA~~v~~~qa   31 (86)
T PRK10259          1 MKTINTVVAAMALSTLSF-GVFAAEPVTASQA   31 (86)
T ss_pred             CCHHHHHHHHHHHHHHHH-HHHHCCCCCCCCC
T ss_conf             914899999999998226-7654141463221


No 109
>PRK10942 serine endoprotease; Provisional
Probab=70.12  E-value=4.3  Score=18.23  Aligned_cols=19  Identities=32%  Similarity=0.298  Sum_probs=13.7

Q ss_pred             CHHHHHHHHHHHHHHHHCC
Q ss_conf             9443789999999998410
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFC   19 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~   19 (205)
                      |||..|++++..|+++.+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~   19 (474)
T PRK10942          1 MKKTTLALSALALSLGLAL   19 (474)
T ss_pred             CCCHHHHHHHHHHHHHHHC
T ss_conf             9721457999999987640


No 110
>pfam10566 Glyco_hydro_97 Glycoside hydrolase 97. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands.
Probab=69.51  E-value=3.2  Score=18.92  Aligned_cols=32  Identities=16%  Similarity=0.106  Sum_probs=19.4

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             94437899999999984100002466543566
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRAHH   32 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~~   32 (205)
                      |||+++.+.+..++++..+.+.+-......|.
T Consensus         1 mkk~~~~~~~~~~~~~~~~~~~~k~~~v~SPD   32 (643)
T pfam10566         1 MKKLTIILLAFLLLIGNLSLAARKNYQLTSPN   32 (643)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCEEEEECCC
T ss_conf             95025789999999976567541623899989


No 111
>pfam07396 Porin_O_P Phosphate-selective porin O and P. This family represents a conserved region approximately 400 residues long within the bacterial phosphate-selective porins O and P. These are anion-specific porins, the binding site of which has a higher affinity for phosphate than chloride ions. Porin O has a higher affinity for polyphosphates, while porin P has a higher affinity for orthophosphate. In P. aeruginosa, porin O was found to be expressed only under phosphate-starvation conditions during the stationary growth phase.
Probab=69.44  E-value=6.6  Score=17.27  Aligned_cols=44  Identities=14%  Similarity=0.205  Sum_probs=32.7

Q ss_pred             EEEEEEEEEECCCCCEEEEEEEEEEECCCC-----CCCCEEEEEEEEEEC
Q ss_conf             799734661004886799999999750565-----566226999998539
Q gi|254780598|r  161 GTAGVGVEVGGLSESLVARLEYRASKYSKV-----EGFYNTISLGVGMKF  205 (205)
Q Consensus       161 ~~~G~Gvey~~it~~~~~r~EY~y~df~~~-----~~~~~~~~~G~~ykF  205 (205)
                      =.+.+|+.| -+++|+-+.++|.|+++.+.     +.+.+.+.+.+-|.|
T Consensus       313 ~~~t~GlNw-Y~n~n~r~~~nY~~~~~~~~~~~~~~~~~~~~~~R~Q~~F  361 (361)
T pfam07396       313 DSWTLGVNW-YVKGNLKFMLNYIKVDSDRRTPATNDDTPDAVTMRLQYDF  361 (361)
T ss_pred             EEEEEEEEE-EECCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf             999999999-9878899999999856466665678888676999998729


No 112
>PRK10780 periplasmic chaperone; Provisional
Probab=68.65  E-value=2.6  Score=19.32  Aligned_cols=22  Identities=59%  Similarity=0.667  Sum_probs=13.7

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9443789999999998410000246
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAAD   25 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad   25 (205)
                      |||+++++++   .|.++.+|.|+.
T Consensus         1 mKk~l~~~~l---~l~l~~~a~Aa~   22 (161)
T PRK10780          1 MKKWLLAAGL---GLALATSAQAAD   22 (161)
T ss_pred             CHHHHHHHHH---HHHHHHHHHHHH
T ss_conf             9589999999---998588887753


No 113
>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane. The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.
Probab=67.82  E-value=7.2  Score=17.09  Aligned_cols=16  Identities=13%  Similarity=-0.056  Sum_probs=7.7

Q ss_pred             ECCCCCEEEEEEEEEE
Q ss_conf             0048867999999997
Q gi|254780598|r  170 GGLSESLVARLEYRAS  185 (205)
Q Consensus       170 ~~it~~~~~r~EY~y~  185 (205)
                      +.++++|.+.+|-.|.
T Consensus       190 ~~v~~~~~va~~~~~~  205 (276)
T cd07306         190 HKVSPRLAVGAKVTWY  205 (276)
T ss_pred             EECCCCEEEEEEEEEE
T ss_conf             9938764899999995


No 114
>PRK11627 hypothetical protein; Provisional
Probab=67.62  E-value=4.9  Score=17.95  Aligned_cols=16  Identities=19%  Similarity=0.401  Sum_probs=9.3

Q ss_pred             CHHHHHHHHHHHHHHHH
Q ss_conf             94437899999999984
Q gi|254780598|r    1 MQKLFLAVGVSSLALAS   17 (205)
Q Consensus         1 Mkk~~la~av~~lal~~   17 (205)
                      |||+++.++. +++|++
T Consensus         2 mkk~~~~l~a-~~lL~g   17 (192)
T PRK11627          2 LKKILFPLVA-LFMLAG   17 (192)
T ss_pred             HHHHHHHHHH-HHHHHH
T ss_conf             2879999999-999986


No 115
>pfam11336 DUF3138 Protein of unknown function (DUF3138). This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=67.51  E-value=3.3  Score=18.80  Aligned_cols=24  Identities=13%  Similarity=0.207  Sum_probs=17.0

Q ss_pred             EEEEEEEEECCCCCEEEEEEEEEEE
Q ss_conf             9973466100488679999999975
Q gi|254780598|r  162 TAGVGVEVGGLSESLVARLEYRASK  186 (205)
Q Consensus       162 ~~G~Gvey~~it~~~~~r~EY~y~d  186 (205)
                      .+-+++-| ..|+.+++|+||||..
T Consensus       463 a~~~dLlf-ypTqq~TvK~EYRhDw  486 (514)
T pfam11336       463 AITADLLF-YPTQQITVKVEYRHDW  486 (514)
T ss_pred             HHHHHHHH-CCCCCEEEEEEEEECC
T ss_conf             42200310-4453158999985133


No 116
>pfam10836 DUF2574 Protein of unknown function (DUF2574). This family of proteins appears to be restricted to Enterobacteriaceae. Members of the family are annotated as yehE however currently no function is known.
Probab=66.12  E-value=3.3  Score=18.84  Aligned_cols=26  Identities=31%  Similarity=0.381  Sum_probs=20.7

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             944378999999999841000024665
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPV   27 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~   27 (205)
                      |||-++. ..-.|+.+++.+++|.|..
T Consensus         1 Mkk~ll~-GiI~laYGls~P~faSdtA   26 (93)
T pfam10836         1 MKKYLLM-GIIVLAYGLSSPVFASDTA   26 (93)
T ss_pred             CCCHHHH-HHHHHHHHCCCCCCCCCCE
T ss_conf             9842435-4688865315642014616


No 117
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=66.01  E-value=5.1  Score=17.86  Aligned_cols=27  Identities=15%  Similarity=0.111  Sum_probs=16.5

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             944378999999999841000024665
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPV   27 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~   27 (205)
                      ||..-++++++++.++++++|.|.+..
T Consensus         1 mk~k~~~~~~~~~~~~~~~~a~a~~~~   27 (330)
T PRK10355          1 MKIKNILLTLCAALLLTSVAAHAKEVK   27 (330)
T ss_pred             CCHHHHHHHHHHHHHHHCCHHHHCCCE
T ss_conf             966899999999999844611213867


No 118
>pfam07383 DUF1496 Protein of unknown function (DUF1496). This family consists of several bacterial proteins of around 90 residues in length. Members of this family seem to be found exclusively in the Orders Vibrionales and Enterobacteriales. The function of this family is unknown.
Probab=66.00  E-value=5.1  Score=17.86  Aligned_cols=31  Identities=23%  Similarity=0.336  Sum_probs=19.8

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             9443789999999998410000246654356
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRAH   31 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~   31 (205)
                      ||++++....+.+++.+.+...++|.....|
T Consensus         1 Mk~~~~~~~~~~~~~~~la~~~~~dv~~~~~   31 (88)
T pfam07383         1 MKRLLILCFAALLSLVALANSVAADVIVTPP   31 (88)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCEECCCC
T ss_conf             9218999999999999861657886661699


No 119
>PRK10672 rare lipoprotein A; Provisional
Probab=65.93  E-value=7.9  Score=16.88  Aligned_cols=20  Identities=30%  Similarity=0.413  Sum_probs=16.5

Q ss_pred             CHHHHHHHHHHHHHHHHCCC
Q ss_conf             94437899999999984100
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCS   20 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~   20 (205)
                      |||-+|.+.+++++|+++..
T Consensus         1 mr~~wl~~~~~~~ll~~c~~   20 (369)
T PRK10672          1 MRKQWLGICIAAGLLAACTS   20 (369)
T ss_pred             CCHHHHHHHHHHHHHHHCCC
T ss_conf             93335899999999865258


No 120
>pfam03249 TSA Type specific antigen. There are several antigenic variants in Rickettsia tsutsugamushi, and a type-specific antigen (TSA) of 56-kilodaltons located on the rickettsial surface is responsible for the variation. TSA proteins are probably integral membrane proteins.
Probab=65.67  E-value=7.8  Score=16.89  Aligned_cols=75  Identities=27%  Similarity=0.406  Sum_probs=26.8

Q ss_pred             CCCEEEEEEEE--EEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEE-EECCCCCCCC--EE--EEEEE
Q ss_conf             27677898854--477644431345556775204799734661004886799999999-7505655662--26--99999
Q gi|254780598|r  129 SDSLLLYATVG--PDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRA-SKYSKVEGFY--NT--ISLGV  201 (205)
Q Consensus       129 ~~~~l~Y~~~G--~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y-~df~~~~~~~--~~--~~~G~  201 (205)
                      +++|.+|+-.|  +|++.-+.+...-. -.+..-.+--+||-.+ ..+.+-+.+|=-| +.|++++-++  |.  .++||
T Consensus       443 teSfSiYaG~gaGlAyT~gkID~kdiK-~htGmVaSgalgvain-aaegvyvdieggymhsfskieekysvnalmas~gv  520 (524)
T pfam03249       443 TESFSIYAGVGAGLAYTSGKIDGKDIK-AHTGMVASGALGVAIN-AAEGVYVDIEGGYMHSFSKIEEKYSVNALMASVGV  520 (524)
T ss_pred             CCEEEEEECCCCCCEEECCCCCCCCCC-CCCCEEEECCHHEEEE-CCCEEEEEECCCEEEEHHHHHHHHCHHHHHHHHCC
T ss_conf             131567622464212321554674334-5443253042013662-23506996205423302445454044478774040


Q ss_pred             EEEC
Q ss_conf             8539
Q gi|254780598|r  202 GMKF  205 (205)
Q Consensus       202 ~ykF  205 (205)
                      .|.|
T Consensus       521 rynf  524 (524)
T pfam03249       521 RYNF  524 (524)
T ss_pred             CCCC
T ss_conf             2469


No 121
>TIGR03525 GldK gliding motility-associated lipoprotein GldK. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldK is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldK abolish the gliding phenotype. GldK is homologous to GldJ. There is a GldK homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=65.34  E-value=6  Score=17.48  Aligned_cols=46  Identities=15%  Similarity=0.073  Sum_probs=23.5

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9443789999999998410000246654356666655563455444444
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRAHHGGRGVVPTIATNRYVPI   49 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~~~~~~~~~~~~~~~~~~~   49 (205)
                      |||+++.+.+.++++++ +...-..++.....  +...+.+...+.+|.
T Consensus         1 Mkk~~~~~~~~~~~~SC-g~~~~GELvGv~~~--~w~~~~PyGMV~IPg   46 (449)
T TIGR03525         1 MKKYLVFAALVVLVYSC-GSGDKGELVGVEGK--KWYPEKPYGMVLVPG   46 (449)
T ss_pred             CCHHHHHHHHHHHHHHC-CCCCCCEEEEECCC--CCCCCCCCEEEEECC
T ss_conf             91248999999987210-58997138731487--557899983589668


No 122
>PRK12788 flgH flagellar basal body L-ring protein; Reviewed
Probab=64.76  E-value=8.3  Score=16.76  Aligned_cols=18  Identities=22%  Similarity=0.143  Sum_probs=11.5

Q ss_pred             CHHHHHHHHHHHHHHHHC
Q ss_conf             944378999999999841
Q gi|254780598|r    1 MQKLFLAVGVSSLALASF   18 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~   18 (205)
                      ||.+++.+++.+|+-|+.
T Consensus         1 mr~l~~~~a~l~LsGCa~   18 (231)
T PRK12788          1 MRLLVAILACLALAGCAN   18 (231)
T ss_pred             CCHHHHHHHHHHHHHHCC
T ss_conf             908999999999764038


No 123
>pfam12099 DUF3575 Protein of unknown function (DUF3575). This family of proteins are functionally uncharacterized. This family is only found in bacteria. Proteins in this family are typically between 187 to 236 amino acids in length.
Probab=64.34  E-value=8.5  Score=16.72  Aligned_cols=31  Identities=26%  Similarity=0.315  Sum_probs=17.1

Q ss_pred             CEEEEEEEEEEEE---CCCCCEEEEEE----EEEEECC
Q ss_conf             2047997346610---04886799999----9997505
Q gi|254780598|r  158 AIGGTAGVGVEVG---GLSESLVARLE----YRASKYS  188 (205)
Q Consensus       158 ~~g~~~G~Gvey~---~it~~~~~r~E----Y~y~df~  188 (205)
                      --|+.+|+|+.|.   .|+++|.+-++    |.++++.
T Consensus       117 yqG~~~g~GisyGY~~~Ls~~wnlE~~iG~Gy~~~~Yd  154 (186)
T pfam12099       117 YQGWLYGGGISYGYQWPLSRRWNLEFSIGLGYLHLEYD  154 (186)
T ss_pred             CCCEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEEE
T ss_conf             03156836799999879679478999999658986870


No 124
>pfam11777 DUF3316 Protein of unknown function (DUF3316). This family of bacterial proteins has no known function. Several members are, however, annotated as being putative acyl-CoA synthetase, but this could not be confirmed.
Probab=64.17  E-value=3.6  Score=18.61  Aligned_cols=21  Identities=38%  Similarity=0.401  Sum_probs=13.0

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9443789999999998410000246
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAAD   25 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad   25 (205)
                      |||+++++.+  +++  +.+|+|..
T Consensus         1 mKk~~ll~~~--ll~--s~~AfA~~   21 (114)
T pfam11777         1 MKKLILLALL--LLL--SATAFAGN   21 (114)
T ss_pred             CHHHHHHHHH--HHH--HHHHHHCC
T ss_conf             9108999999--999--88887555


No 125
>COG4991 Uncharacterized protein with a bacterial SH3 domain homologue [Function unknown]
Probab=64.05  E-value=7.4  Score=17.01  Aligned_cols=24  Identities=29%  Similarity=0.182  Sum_probs=15.9

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             944378999999999841000024
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAA   24 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aa   24 (205)
                      |+|.++.+.+..+++.+.+.|+|+
T Consensus        10 ~~~~~~~A~a~~~~l~~~~~a~aa   33 (155)
T COG4991          10 SMKTLMRASAFGLALLMPAAAYAA   33 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             677899999999998747888887


No 126
>PRK10877 thiol:disulfide interchange protein DsbC; Provisional
Probab=63.61  E-value=3.2  Score=18.91  Aligned_cols=25  Identities=28%  Similarity=0.260  Sum_probs=16.3

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             944378999999999841000024665
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPV   27 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~   27 (205)
                      |||.++++.+.++++  ++.|+|.+..
T Consensus         1 mkk~l~~~~~l~~~~--s~~a~aDea~   25 (232)
T PRK10877          1 MKKGFMLFTLLAAAF--SGFAHADDAA   25 (232)
T ss_pred             CCHHHHHHHHHHHHH--HHHHHCCHHH
T ss_conf             926699999999998--6252437999


No 127
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=63.42  E-value=8.1  Score=16.82  Aligned_cols=27  Identities=26%  Similarity=0.208  Sum_probs=20.5

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             944378999999999841000024665
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPV   27 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~   27 (205)
                      |||+..++.+..|..+.+.+|.|-...
T Consensus         1 Mkki~~als~v~ll~~~a~pa~A~g~s   27 (237)
T COG3700           1 MKKITQALSAVCLLFALASPAVALGSS   27 (237)
T ss_pred             CHHHHHHHHHHHHHHHHCCHHHHCCCC
T ss_conf             914889999999999862616640799


No 128
>pfam06291 Lambda_Bor Bor protein. This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the Escherichia coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis.
Probab=63.34  E-value=4.3  Score=18.25  Aligned_cols=23  Identities=26%  Similarity=0.605  Sum_probs=13.6

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9443789999999998410000246
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAAD   25 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad   25 (205)
                      |||++++++++ ++|++ ++.+...
T Consensus         1 MKk~~~~~~~a-llLtg-Ca~QT~~   23 (97)
T pfam06291         1 MKKMLFAAALA-LLITG-CAQQTFT   23 (97)
T ss_pred             CHHHHHHHHHH-HHHCC-CCCEEEE
T ss_conf             92259999999-99721-3304999


No 129
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=63.18  E-value=5.1  Score=17.84  Aligned_cols=26  Identities=31%  Similarity=0.290  Sum_probs=20.0

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             94437899999999984100002466
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADP   26 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~   26 (205)
                      |||+..++....++.+..++|.|.+.
T Consensus         3 ~~k~~~~~~~~~~~~~~~a~a~a~~T   28 (295)
T PRK10653          3 MKKLATLVSAVALSATVSANAMAKDT   28 (295)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHCCCE
T ss_conf             07999999999876521217752997


No 130
>pfam07901 DUF1672 Protein of unknown function (DUF1672). This family is composed of hypothetical bacterial proteins of unknown function.
Probab=63.10  E-value=4.8  Score=17.97  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=18.5

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9443789999999998410000
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQ   22 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~   22 (205)
                      |||++..+.+++|+|++++.-.
T Consensus         1 MkK~i~~il~~~llL~GCs~mn   22 (304)
T pfam07901         1 MRKLIKLILIATLLLSGCSTTN   22 (304)
T ss_pred             CCHHHHHHHHHHHHHCCCCCCC
T ss_conf             9018999999999971334455


No 131
>pfam05538 Campylo_MOMP Campylobacter major outer membrane protein. This family consists of Campylobacter major outer membrane proteins. The major outer membrane protein (MOMP), a putative porin and a multifunction surface protein of Campylobacter jejuni, may play an important role in the adaptation of the organism to various host environments.
Probab=62.79  E-value=9.1  Score=16.56  Aligned_cols=14  Identities=21%  Similarity=0.197  Sum_probs=10.8

Q ss_pred             CCCEEEEEEEEEEC
Q ss_conf             66226999998539
Q gi|254780598|r  192 GFYNTISLGVGMKF  205 (205)
Q Consensus       192 ~~~~~~~~G~~ykF  205 (205)
                      .+.|++|+-+-|+|
T Consensus       424 ~~~d~~R~eAkYsF  437 (437)
T pfam05538       424 ADHDAVRLQALYKF  437 (437)
T ss_pred             CCCCEEEEEEEECC
T ss_conf             45432899998439


No 132
>COG2829 PldA Outer membrane phospholipase A [Cell envelope biogenesis, outer membrane]
Probab=61.88  E-value=9.5  Score=16.47  Aligned_cols=76  Identities=16%  Similarity=0.273  Sum_probs=43.5

Q ss_pred             CCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC--CC
Q ss_conf             3214899989754312767789885447764443134555677520479973466100488679999999975056--55
Q gi|254780598|r  114 HGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSK--VE  191 (205)
Q Consensus       114 ~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~--~~  191 (205)
                      .++++-...|++|..+|....+-  |+   +.+.        ++.-| .+-+|.-| .|++++-.-+.| +.-+|.  +|
T Consensus       236 ~~YMGy~dvkl~Y~~~d~~f~l~--~~---~yn~--------~t~~G-a~e~~ysY-pI~~~v~~Y~Q~-fnGYGEsLiD  299 (317)
T COG2829         236 TKYMGYGDVKLGYRLGDHQFSLS--GY---RYNP--------NTGYG-AIELGYSY-PITKHVRLYTQV-FNGYGESLID  299 (317)
T ss_pred             HHHCCCCCEEEEEECCCCEEEEE--EE---EECC--------CCCCC-EEEEEECC-CCCCCEEEEEEE-ECCCCCHHHH
T ss_conf             87526651363364165057765--35---7146--------78875-06875012-135860899998-5267720432


Q ss_pred             CCCEEEEEEEEEEC
Q ss_conf             66226999998539
Q gi|254780598|r  192 GFYNTISLGVGMKF  205 (205)
Q Consensus       192 ~~~~~~~~G~~ykF  205 (205)
                      -+.+.-|||+|.++
T Consensus       300 Yn~~~~RiGvGi~l  313 (317)
T COG2829         300 YNFNQNRIGVGIML  313 (317)
T ss_pred             HHHCCCCEEEEEEE
T ss_conf             12102423577982


No 133
>pfam12276 DUF3617 Protein of unknown function (DUF3617). This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=61.80  E-value=7.2  Score=17.09  Aligned_cols=17  Identities=29%  Similarity=0.340  Sum_probs=10.6

Q ss_pred             CHHHHHHHHHHHHHHHH
Q ss_conf             94437899999999984
Q gi|254780598|r    1 MQKLFLAVGVSSLALAS   17 (205)
Q Consensus         1 Mkk~~la~av~~lal~~   17 (205)
                      |||.++.+++.++++..
T Consensus         1 M~~~~~~~~~~~~~~~~   17 (149)
T pfam12276         1 MKRLLLLALLLLLLLLA   17 (149)
T ss_pred             CCHHHHHHHHHHHHHHH
T ss_conf             95057899999999862


No 134
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=61.60  E-value=9.6  Score=16.44  Aligned_cols=16  Identities=19%  Similarity=0.403  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHC
Q ss_conf             44378999999999841
Q gi|254780598|r    2 QKLFLAVGVSSLALASF   18 (205)
Q Consensus         2 kk~~la~av~~lal~~~   18 (205)
                      ||+++.+++ +++|+++
T Consensus         1 kr~l~l~~~-~l~LsGC   16 (220)
T PRK12407          1 KRFLILTPM-VLALCGC   16 (220)
T ss_pred             CCCHHHHHH-HHHHHCC
T ss_conf             915799999-9997365


No 135
>PRK09465 tolC outer membrane channel protein; Reviewed
Probab=61.29  E-value=5.2  Score=17.82  Aligned_cols=29  Identities=21%  Similarity=0.033  Sum_probs=17.1

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             944378999999999841000024665435
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRA   30 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~   30 (205)
                      |||++..+.. .++.+.+++|+|.++....
T Consensus         1 mkki~~~l~~-l~l~~~~~~a~a~tL~eal   29 (446)
T PRK09465          1 MKKLLPLLIG-LSLAGFSSASQAEDLLQVY   29 (446)
T ss_pred             CCHHHHHHHH-HHHHHCCHHCHHCCHHHHH
T ss_conf             9429999999-9998613112122099999


No 136
>PRK13484 putative iron-regulated outer membrane virulence protein; Provisional
Probab=60.91  E-value=9.9  Score=16.37  Aligned_cols=85  Identities=8%  Similarity=0.167  Sum_probs=34.1

Q ss_pred             EEEEEEEEECCCEEEEEEEEEEEEEEEEC-CCCCCCCCCCEEEE-EEEEEEEECCCCCEEEEEEEE------EEECCCCC
Q ss_conf             99897543127677898854477644431-34555677520479-973466100488679999999------97505655
Q gi|254780598|r  120 LRIRGGYEVSDSLLLYATVGPDVAQKYET-GKAGEITPIAIGGT-AGVGVEVGGLSESLVARLEYR------ASKYSKVE  191 (205)
Q Consensus       120 ~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~-~~~~~~~~~~~g~~-~G~Gvey~~it~~~~~r~EY~------y~df~~~~  191 (205)
                      +.+++.|.+.+.+.+++...+.-.+.... .+.........+|+ +-+.+.| .++++|.+++.-+      |.+.....
T Consensus       585 ~~~~~~~~~~~~~~~~~~~~y~g~~~~~~~~~~~~~~~~~~~y~~~dl~~~Y-~~~~~~~l~~~V~NLfDk~y~~~~~~~  663 (682)
T PRK13484        585 ANAKLEWDYTQDITFYSSLNYTGKQIWAAQRNGAKVPRVRNGFTSMDIGLNY-QILPDTLINFAVLNVTDRKSEDIDTID  663 (682)
T ss_pred             EEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCEECCCEEEEEEEEEE-ECCCCCEEEEEEECCCCCCEEEEECCC
T ss_conf             8999999975772698889998667770347776564202777999879999-879990999999977488611440457


Q ss_pred             -----CCCEEEEEEEEEEC
Q ss_conf             -----66226999998539
Q gi|254780598|r  192 -----GFYNTISLGVGMKF  205 (205)
Q Consensus       192 -----~~~~~~~~G~~ykF  205 (205)
                           ..--++.++|.|+|
T Consensus       664 ~~~~~~~gR~~~~~v~y~F  682 (682)
T PRK13484        664 GNWQVDEGRRYWANVRVSF  682 (682)
T ss_pred             CCCCCCCCCEEEEEEEEEC
T ss_conf             7472389969999999989


No 137
>PRK06763 F0F1 ATP synthase subunit alpha; Validated
Probab=60.51  E-value=1.8  Score=20.14  Aligned_cols=18  Identities=33%  Similarity=0.377  Sum_probs=13.6

Q ss_pred             CHHHHHHHHHHHHHHHHC
Q ss_conf             944378999999999841
Q gi|254780598|r    1 MQKLFLAVGVSSLALASF   18 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~   18 (205)
                      |||++||-|+..++|++.
T Consensus         3 MKKvILAgALGiAALaGT   20 (213)
T PRK06763          3 MKKVILAGALGIAALSGT   20 (213)
T ss_pred             CCEEEEECHHHHHHHHCC
T ss_conf             513888130333545348


No 138
>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed
Probab=60.19  E-value=7.2  Score=17.08  Aligned_cols=25  Identities=20%  Similarity=0.139  Sum_probs=14.7

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9443789999999998410000246
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAAD   25 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad   25 (205)
                      |||+.+.+..+.++..+.+++.|++
T Consensus         1 ~~~~~~~ll~~~a~~l~~~~~~a~~   25 (348)
T PRK09501          1 MKKWSRHLLAAGALALGMSAAHADD   25 (348)
T ss_pred             CHHHHHHHHHHHHHHHHCCHHHHCC
T ss_conf             9368999999999997350335433


No 139
>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]
Probab=59.96  E-value=6.4  Score=17.36  Aligned_cols=31  Identities=35%  Similarity=0.389  Sum_probs=21.2

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             9443789999999998410000246654356
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRAH   31 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~   31 (205)
                      ||+...++..++++++++..+++|......+
T Consensus         2 mr~~~~~v~a~al~~~a~~la~~Aa~~~~~~   32 (160)
T COG3678           2 MRKVTAAVGAAALALTASALAHAAATAAAPP   32 (160)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             3368999999999865789998887435899


No 140
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=59.96  E-value=8.5  Score=16.71  Aligned_cols=30  Identities=30%  Similarity=0.193  Sum_probs=19.7

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             944378999999999841000024665435
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRA   30 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~   30 (205)
                      |||.++++.+++.++...-.+--||+...+
T Consensus         1 m~k~l~~~~l~~~l~~~~~~~~~a~~~~~~   30 (303)
T PRK10564          1 MKKSLIALCLSAGLLASVPGISLADVNYVP   30 (303)
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHCCCCCCC
T ss_conf             940099999998886058620111663246


No 141
>PRK12395 maltoporin; Provisional
Probab=59.90  E-value=5.8  Score=17.55  Aligned_cols=25  Identities=20%  Similarity=0.078  Sum_probs=18.2

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9443789999999998410000246
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAAD   25 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad   25 (205)
                      ||..++.+++++++.+.+.+|+|+.
T Consensus         1 m~~~~~~~~~a~~~~~~~~~~~a~~   25 (419)
T PRK12395          1 MKTSLRTLSVALAAALVSPSVLAIE   25 (419)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCHHH
T ss_conf             9612357899999998642113211


No 142
>PRK10044 ferrichrome outer membrane transporter; Provisional
Probab=59.56  E-value=10  Score=16.25  Aligned_cols=25  Identities=12%  Similarity=0.298  Sum_probs=17.1

Q ss_pred             EEEEEEEEEECCCCCEEEEEEEEEEE
Q ss_conf             79973466100488679999999975
Q gi|254780598|r  161 GTAGVGVEVGGLSESLVARLEYRASK  186 (205)
Q Consensus       161 ~~~G~Gvey~~it~~~~~r~EY~y~d  186 (205)
                      ..++.-+|. .+++.|+++..++|.+
T Consensus       313 ~~~~~~~~~-~~~d~~t~~~~~~y~~  337 (730)
T PRK10044        313 KMVGYSFDH-EFNDTFTVRQNLRFAE  337 (730)
T ss_pred             EEEEEEEEE-EECCCEEEEEEEEEEE
T ss_conf             999999999-7079879999999865


No 143
>cd01345 OM_channels Porin superfamily.  These outer membrane channels share a beta-barrel structure that differ in strand and shear number.  Classical (gram-negative ) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20), which associate as trimers. Maltoporin-like channels have specificities for various sugars and form 18 beta-stranded barrels (18,22), which associate as trimers. Ligand-gated protein channels cooperate with a TonB associated inner membrane complex to actively transport ligands via the proton motive force and they form monomeric, (22,24) barrels. The 150-200 N-terminal residues form a plug that blocks the channel from the periplasmic end.
Probab=58.86  E-value=11  Score=16.18  Aligned_cols=22  Identities=9%  Similarity=0.193  Sum_probs=18.4

Q ss_pred             EEEEEEEEECCCCCEEEEEEEEE
Q ss_conf             99734661004886799999999
Q gi|254780598|r  162 TAGVGVEVGGLSESLVARLEYRA  184 (205)
Q Consensus       162 ~~G~Gvey~~it~~~~~r~EY~y  184 (205)
                      .+++|+.| .+++++++++.+.-
T Consensus       191 ~~~i~~~Y-~~nkn~~l~~Gv~N  212 (253)
T cd01345         191 IVGLSATW-DVTKNVSLTGGYDN  212 (253)
T ss_pred             EEEECCEE-EECCCEEEEECCCC
T ss_conf             88403158-86255588402020


No 144
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=58.85  E-value=11  Score=16.18  Aligned_cols=17  Identities=29%  Similarity=0.557  Sum_probs=6.4

Q ss_pred             CHHHHHHHHHHHHHHHHCC
Q ss_conf             9443789999999998410
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFC   19 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~   19 (205)
                      ||.+++++++  ++|++++
T Consensus         7 ~K~l~ia~~~--l~LaACS   23 (173)
T PRK10802          7 LKGLMIALPV--MAIAACS   23 (173)
T ss_pred             HHHHHHHHHH--HHHHHCC
T ss_conf             9999999999--9998557


No 145
>pfam06649 DUF1161 Protein of unknown function (DUF1161). This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=58.77  E-value=4.9  Score=17.92  Aligned_cols=26  Identities=42%  Similarity=0.424  Sum_probs=15.4

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             944378999999999841000024665435
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRA   30 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~   30 (205)
                      |||.++++++..++    .++.||.-..+.
T Consensus         1 Mkk~~l~~~l~lla----~~alAA~~sCE~   26 (75)
T pfam06649         1 MKRLLLAVALLLLA----ASALAAPKSCEE   26 (75)
T ss_pred             CCHHHHHHHHHHHH----HHHHHCCCCHHH
T ss_conf             92469999999971----345315588899


No 146
>pfam12262 Lipase_bact_N Bacterial virulence factor lipase N-terminal. This domain family is found in bacteria, and is typically between 258 and 271 amino acids in length. There are two conserved sequence motifs: DGT and DGWST. This family is the N-terminal region of bacterial virulence factor lipase. The N-terminal region contains a potential signalling sequence.
Probab=57.56  E-value=6.9  Score=17.17  Aligned_cols=16  Identities=44%  Similarity=0.484  Sum_probs=12.0

Q ss_pred             CHHHHHHHHHHHHHHH
Q ss_conf             9443789999999998
Q gi|254780598|r    1 MQKLFLAVGVSSLALA   16 (205)
Q Consensus         1 Mkk~~la~av~~lal~   16 (205)
                      |||+++.+++++.+..
T Consensus         1 MKk~~l~~~i~SAL~L   16 (269)
T pfam12262         1 MKKKFLALLLASALLL   16 (269)
T ss_pred             CCHHHHHHHHHHHHHH
T ss_conf             9247999999998641


No 147
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=55.95  E-value=7.8  Score=16.89  Aligned_cols=18  Identities=39%  Similarity=0.600  Sum_probs=13.5

Q ss_pred             CHHHHHHHHHHHHH-HHHC
Q ss_conf             94437899999999-9841
Q gi|254780598|r    1 MQKLFLAVGVSSLA-LASF   18 (205)
Q Consensus         1 Mkk~~la~av~~la-l~~~   18 (205)
                      |||+++.+++++.+ |+++
T Consensus         1 MKk~~l~~~iasal~LagC   19 (792)
T TIGR03502         1 MKKLLLSLAIASALGLAGC   19 (792)
T ss_pred             CCHHHHHHHHHHHHHHHCC
T ss_conf             9337899999998750045


No 148
>PRK09915 putative outer membrane efflux protein MdtP; Provisional
Probab=53.24  E-value=14  Score=15.67  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=13.2

Q ss_pred             CHHHHHHHHHHHHHHHHCCCC
Q ss_conf             944378999999999841000
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSA   21 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A   21 (205)
                      ||+++++..+++.++.+.|+.
T Consensus         6 ~~r~~~~~~l~~~~lLagC~~   26 (488)
T PRK09915          6 LSRLLLCSILGSTTLISGCAL   26 (488)
T ss_pred             HHHHHHHHHHHHHHHHCCCCC
T ss_conf             769999999999999752668


No 149
>PRK10449 heat-inducible protein; Provisional
Probab=52.51  E-value=10  Score=16.29  Aligned_cols=17  Identities=29%  Similarity=0.352  Sum_probs=9.9

Q ss_pred             CHHHHHHHHHHHHHHHHC
Q ss_conf             944378999999999841
Q gi|254780598|r    1 MQKLFLAVGVSSLALASF   18 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~   18 (205)
                      |||++..++++. ++++.
T Consensus         1 MKk~l~l~~~~l-lLagC   17 (140)
T PRK10449          1 MKKVVALVALSL-LMAGC   17 (140)
T ss_pred             CCHHHHHHHHHH-HHHHC
T ss_conf             903499999999-99752


No 150
>PRK11459 multidrug resistance outer membrane protein MdtQ; Provisional
Probab=52.28  E-value=14  Score=15.59  Aligned_cols=28  Identities=18%  Similarity=0.062  Sum_probs=15.1

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             9443789999999998410000246654
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVR   28 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~   28 (205)
                      |||..+--.+++|+++..-+++|..+..
T Consensus         1 ~~~~~f~~~~a~l~~~llLaGCa~~~~~   28 (478)
T PRK11459          1 MNRDSFYAATASLPLFILLAGCAPMHET   28 (478)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             9974058889999999998378899999


No 151
>COG4314 NosL Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion]
Probab=51.95  E-value=14  Score=15.59  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=16.2

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             94437899999999984100002
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQA   23 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~A   23 (205)
                      ||+.++++....+++++...+.-
T Consensus         1 mkr~Lla~la~~~llAgC~~~ed   23 (176)
T COG4314           1 MKRTLLAILAVTALLAGCRQAED   23 (176)
T ss_pred             CCHHHHHHHHHHHHHHHCCHHHC
T ss_conf             94037999999999875343113


No 152
>pfam12071 DUF3551 Protein of unknown function (DUF3551). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=51.15  E-value=9.9  Score=16.38  Aligned_cols=11  Identities=36%  Similarity=0.329  Sum_probs=8.2

Q ss_pred             CHHHHHHHHHH
Q ss_conf             94437899999
Q gi|254780598|r    1 MQKLFLAVGVS   11 (205)
Q Consensus         1 Mkk~~la~av~   11 (205)
                      ||+++++..+.
T Consensus         1 MR~~~~a~~a~   11 (82)
T pfam12071         1 MRGLLLAALAL   11 (82)
T ss_pred             CHHHHHHHHHH
T ss_conf             94799999999


No 153
>pfam11853 DUF3373 Protein of unknown function (DUF3373). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=51.02  E-value=15  Score=15.48  Aligned_cols=54  Identities=19%  Similarity=0.091  Sum_probs=28.0

Q ss_pred             CEEEEEEEEEEEEEEEECCC-------CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEE
Q ss_conf             67789885447764443134-------5556775204799734661004886799999999
Q gi|254780598|r  131 SLLLYATVGPDVAQKYETGK-------AGEITPIAIGGTAGVGVEVGGLSESLVARLEYRA  184 (205)
Q Consensus       131 ~~l~Y~~~G~a~~~~~~~~~-------~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y  184 (205)
                      ++-.++..|+..++-.....       .-...++++||.+=+|++|..+++.--+++||.|
T Consensus       332 d~~~F~S~a~S~t~Pn~~~~~~~~~~~~l~~~~sktG~sv~vG~~~p~~~~~~K~G~EYN~  392 (485)
T pfam11853       332 NLNAFVSFGWSKTHPNGNVSANAGFQGMLGSTDSKTGYSVYVGARYDLLPSGTKFGLEYNH  392 (485)
T ss_pred             CEEEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEEC
T ss_conf             6448998888850589875501567752289989860599996414677878657789615


No 154
>pfam03895 YadA YadA-like C-terminal region. This region represents the C-terminal 120 amino acids of a family of surface-exposed bacterial proteins. YadA, an adhesin from Yersinia, was the first member of this family to be characterized. UspA2 from Moraxella was second. The Eib immunoglobulin-binding proteins from E. coli were third, followed by the DsrA proteins of Haemophilus ducreyi and others. These proteins are homologous at their C-terminal and have predicted signal sequences, but they diverge elsewhere. The C-terminal 9 amino acids, consisting of alternating hydrophobic amino acids ending in F or W, comprise a targeting motif for the outer membrane of the Gram negative cell envelope. This region is important for oligomerisation.
Probab=50.95  E-value=15  Score=15.47  Aligned_cols=38  Identities=21%  Similarity=0.223  Sum_probs=22.2

Q ss_pred             EEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             99734661004886799999999750565566226999998539
Q gi|254780598|r  162 TAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       162 ~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      .+.+|+.+ .+++||.+|+.--+..    . ..-.+.+|++|.|
T Consensus        41 A~AvG~s~-~~n~~~~~~~~~s~~s----~-~~~~~gaGv~~~w   78 (78)
T pfam03895        41 AVAVGASY-RSNGNVVVKLGVSTSS----G-GDVGGGAGVGYQW   78 (78)
T ss_pred             EEEEEEEE-EECCCEEEEEEEEECC----C-CCEEEEEEEEEEC
T ss_conf             89999889-8779899999898718----9-9879997764589


No 155
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=50.75  E-value=15  Score=15.46  Aligned_cols=48  Identities=17%  Similarity=0.220  Sum_probs=22.3

Q ss_pred             CCEEEEEEEEEEEECCCCCEEEEEEEEE--EECCCCCCCCEEEEEEEEEEC
Q ss_conf             5204799734661004886799999999--750565566226999998539
Q gi|254780598|r  157 IAIGGTAGVGVEVGGLSESLVARLEYRA--SKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       157 ~~~g~~~G~Gvey~~it~~~~~r~EY~y--~df~~~~~~~~~~~~G~~ykF  205 (205)
                      +...|.++-|=+. .+++.|.+..+-.+  .-+.-..-..+.+.+++++||
T Consensus       769 ~~~~w~l~Y~h~w-~~~~~~~~~ygv~~~k~~YDG~rE~~~~~~~~l~~rF  818 (818)
T PRK10049        769 TGVVTTLGYGQRV-SWNDVIDTGATLRWDKRPYDGDREHNLYLSFDLNYRF  818 (818)
T ss_pred             CCCCCEEECEEEE-EECCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECC
T ss_conf             7865202011489-9767144577887436888998664747999988439


No 156
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional
Probab=50.65  E-value=14  Score=15.65  Aligned_cols=25  Identities=12%  Similarity=0.215  Sum_probs=16.9

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9443789999999998410000246
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAAD   25 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad   25 (205)
                      ||+++.+...++++++....+.++.
T Consensus         1 ~~~~l~~~la~~~~~~~~~~~~~~~   25 (314)
T PRK11553          1 MRNIIKLALAGLLSVSTLAVAAESS   25 (314)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9779999999999998754443348


No 157
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=49.39  E-value=13  Score=15.69  Aligned_cols=18  Identities=39%  Similarity=0.409  Sum_probs=10.6

Q ss_pred             CHHHHHHHHH---HHHHHHHC
Q ss_conf             9443789999---99999841
Q gi|254780598|r    1 MQKLFLAVGV---SSLALASF   18 (205)
Q Consensus         1 Mkk~~la~av---~~lal~~~   18 (205)
                      |||.+++.++   ++++|+++
T Consensus         1 MKKKl~~~~~~~~svl~LaaC   21 (310)
T PRK01326          1 MKKKLIAGAVTLLSVATLAAC   21 (310)
T ss_pred             CCHHHHHHHHHHHHHHHHHHH
T ss_conf             908899999999999999871


No 158
>PRK10894 hypothetical protein; Provisional
Probab=49.13  E-value=11  Score=16.04  Aligned_cols=26  Identities=27%  Similarity=0.097  Sum_probs=14.1

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             94437899999999984100002466
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADP   26 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~   26 (205)
                      |+++.|.++.++|+++.++-|.-+|-
T Consensus         7 ~~~~~l~l~~~ll~~S~~a~Al~sD~   32 (184)
T PRK10894          7 KLSLNLLLASSLLAASIPAFAVTGDT   32 (184)
T ss_pred             CCHHHHHHHHHHHHHCCHHHHCCCCC
T ss_conf             42066999999987161243155344


No 159
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=48.42  E-value=12  Score=15.98  Aligned_cols=15  Identities=40%  Similarity=0.452  Sum_probs=10.2

Q ss_pred             CHHHHHHHHHHHHHH
Q ss_conf             944378999999999
Q gi|254780598|r    1 MQKLFLAVGVSSLAL   15 (205)
Q Consensus         1 Mkk~~la~av~~lal   15 (205)
                      |||++++++.+++++
T Consensus         5 MKK~~l~~~~~~~~l   19 (298)
T PRK04405          5 MKKWALAAASAGLLL   19 (298)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             899999999999999


No 160
>COG5455 Predicted integral membrane protein [Function unknown]
Probab=48.33  E-value=14  Score=15.54  Aligned_cols=13  Identities=31%  Similarity=0.245  Sum_probs=7.7

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             9443789999999
Q gi|254780598|r    1 MQKLFLAVGVSSL   13 (205)
Q Consensus         1 Mkk~~la~av~~l   13 (205)
                      |||+++++..++.
T Consensus         2 mkrlv~~lla~s~   14 (129)
T COG5455           2 MKRLVSALLAVSS   14 (129)
T ss_pred             CHHHHHHHHHHHH
T ss_conf             1438999999998


No 161
>PRK10290 superoxide dismutase; Provisional
Probab=48.12  E-value=11  Score=16.05  Aligned_cols=22  Identities=36%  Similarity=0.442  Sum_probs=12.0

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             94437899999999984100002466
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADP   26 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~   26 (205)
                      |||+.++++.  |+++  +.++|+..
T Consensus         1 mk~~~~~~~~--l~~~--~~~~a~~~   22 (173)
T PRK10290          1 MKRFSLAILA--LVVC--TGAQAASE   22 (173)
T ss_pred             CCHHHHHHHH--HHHH--HHHHHCCC
T ss_conf             9107999999--9997--66651446


No 162
>PRK01904 hypothetical protein; Provisional
Probab=47.92  E-value=11  Score=16.23  Aligned_cols=27  Identities=15%  Similarity=-0.005  Sum_probs=17.4

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             94437899999999984100002466543
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRR   29 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~   29 (205)
                      ||....+++  +++|+.+++++|+.+..+
T Consensus         1 MK~~~~~~a--l~~l~~S~~a~A~tL~lp   27 (217)
T PRK01904          1 MKLRAAALA--VATLLTSTASFAGMVTTS   27 (217)
T ss_pred             CCCCHHHHH--HHHHHHHHHHHHHHCCCC
T ss_conf             970079999--999986089887514078


No 163
>COG3767 Uncharacterized low-complexity protein [Function unknown]
Probab=47.87  E-value=12  Score=16.02  Aligned_cols=24  Identities=38%  Similarity=0.310  Sum_probs=14.0

Q ss_pred             CHHHHHH-HHHHHHHHHHCCCCCCC
Q ss_conf             9443789-99999999841000024
Q gi|254780598|r    1 MQKLFLA-VGVSSLALASFCSAQAA   24 (205)
Q Consensus         1 Mkk~~la-~av~~lal~~~~~A~Aa   24 (205)
                      |||+.++ ..+.++.|+.+..++|.
T Consensus         1 mkk~~~~~alagA~~l~~a~~~~a~   25 (95)
T COG3767           1 MKKLATAAALAGALLLGAAAVAQAE   25 (95)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9037889999878999988888987


No 164
>COG4851 CamS Protein involved in sex pheromone biosynthesis [General function prediction only]
Probab=47.43  E-value=14  Score=15.65  Aligned_cols=25  Identities=24%  Similarity=0.191  Sum_probs=13.2

Q ss_pred             CHHHHHH-HHHHHHHHHHCCCCCCCCC
Q ss_conf             9443789-9999999984100002466
Q gi|254780598|r    1 MQKLFLA-VGVSSLALASFCSAQAADP   26 (205)
Q Consensus         1 Mkk~~la-~av~~lal~~~~~A~Aad~   26 (205)
                      |||.+.. +.+++|.|+++. -+-.|.
T Consensus         1 Mkktl~i~~ta~vliLs~C~-~~~dd~   26 (382)
T COG4851           1 MKKTLGIAATASVLILSGCF-PFVDDT   26 (382)
T ss_pred             CCHHHHHHHHHHHHHHHHCC-CCCCCC
T ss_conf             94015589999999986116-766873


No 165
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672; InterPro: IPR010025   This family of proteins is a member of the IIIB subfamily (IPR001001 from INTERPRO) of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of subfamily III and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs , all of which are found conserved in this family.   AphA is a periplasmic acid phosphatase of Escherichia coli  belonging to class B bacterial phosphatases , which is part of the DDDD superfamily of phosphohydrolases. The crystal structure of AphA has been determined at 2.2A and its resolution extended to 1.7A. Despite the lack of sequence homology, the AphA structure reveals a haloacid dehalogenase-like fold. This finding suggests that this fold could be conserved among members of the DDDD superfamily of phosphohydrolases. The active enzyme is a homotetramer built by using an extended N-terminal arm intertwining the four monomers. The active site of the native enzyme hosts a magnesium ion, which can be replaced by other metal ions. The structure explains the non-specific behaviour of AphA towards substrates, while a structure-based alignment with other phosphatases provides clues about the catalytic mechanism . ; GO: 0003993 acid phosphatase activity, 0030288 outer membrane-bounded periplasmic space.
Probab=47.06  E-value=17  Score=15.14  Aligned_cols=26  Identities=31%  Similarity=0.208  Sum_probs=18.9

Q ss_pred             CHHHHHH-HHHHHHHHHHCCCCCCCCC
Q ss_conf             9443789-9999999984100002466
Q gi|254780598|r    1 MQKLFLA-VGVSSLALASFCSAQAADP   26 (205)
Q Consensus         1 Mkk~~la-~av~~lal~~~~~A~Aad~   26 (205)
                      |||++-+ +.+.+|+.+.+.+|.|...
T Consensus         1 Mkk~~~~ils~v~ll~a~a~pa~A~g~   27 (248)
T TIGR01672         1 MKKVTKAILSVVALLTALAVPAVALGK   27 (248)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCEEEECC
T ss_conf             915788999999999997423122058


No 166
>PRK00249 flgH flagellar basal body L-ring protein; Reviewed
Probab=47.03  E-value=17  Score=15.14  Aligned_cols=25  Identities=24%  Similarity=0.376  Sum_probs=11.3

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9443789999999998410000246
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAAD   25 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad   25 (205)
                      |+++++.+.+.++++.+.|+....+
T Consensus         1 ~~~~~~~~~~~~~~~LsgCa~~~~~   25 (231)
T PRK00249          1 MAMMLIALALLLLLLLSGCASIPPK   25 (231)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             9338999999999998753489998


No 167
>PRK13680 hypothetical protein; Provisional
Probab=46.89  E-value=14  Score=15.68  Aligned_cols=25  Identities=32%  Similarity=0.178  Sum_probs=17.3

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9443789999999998410000246
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAAD   25 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad   25 (205)
                      |||.-+++.+.+++++...++++-+
T Consensus         5 mkk~G~~l~~lll~~s~~~~a~~ee   29 (121)
T PRK13680          5 MKKRGALLVLLLLACSSVFSANAEE   29 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             7665299999999988777665057


No 168
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.26  E-value=12  Score=15.88  Aligned_cols=24  Identities=29%  Similarity=0.297  Sum_probs=15.3

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             944378999999999841000024
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAA   24 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aa   24 (205)
                      |||+++..++.+.+++++.++.++
T Consensus         3 m~k~l~~~~ll~~a~a~~~~~~~~   26 (202)
T COG2854           3 MKKSLTILALLVIAFASSLAAAAP   26 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             899999999999999988876375


No 169
>pfam04357 DUF490 Family of unknown function (DUF490).
Probab=46.19  E-value=18  Score=15.07  Aligned_cols=30  Identities=17%  Similarity=0.180  Sum_probs=14.3

Q ss_pred             EEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             4661004886799999999750565566226999998539
Q gi|254780598|r  166 GVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       166 Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      .+|| .++++|++++++...         ..-.+++-|||
T Consensus       318 ~i~y-~l~~~~~l~~~~~~~---------~~~~~~l~y~~  347 (349)
T pfam04357       318 TLEY-RLTPNLSLEASSDSG---------GESGVDLFYKF  347 (349)
T ss_pred             EEEE-EECCCEEEEEEECCC---------CCCEEEEEEEE
T ss_conf             9999-976998999999679---------86389899997


No 170
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed
Probab=45.27  E-value=17  Score=15.21  Aligned_cols=18  Identities=22%  Similarity=0.266  Sum_probs=11.6

Q ss_pred             CHHHHHHHHHHHHHHHHC
Q ss_conf             944378999999999841
Q gi|254780598|r    1 MQKLFLAVGVSSLALASF   18 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~   18 (205)
                      +||.++++++.++++|..
T Consensus         3 ~~~~l~~~~~~~l~~~~~   20 (259)
T PRK11917          3 FRKSLLKLAVFALGACVA   20 (259)
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             279999999999999986


No 171
>COG3026 RseB Negative regulator of sigma E activity [Signal transduction mechanisms]
Probab=44.36  E-value=18  Score=14.99  Aligned_cols=27  Identities=19%  Similarity=0.175  Sum_probs=20.4

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             944378999999999841000024665
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPV   27 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~   27 (205)
                      ||++..++.+....++++..|.|.++.
T Consensus         1 mk~l~~s~~ll~~sl~~s~~a~ae~~s   27 (320)
T COG3026           1 MKQLWFSLLLLLGSLLLSAAASAESAS   27 (320)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             923789999999998610443046865


No 172
>PRK11119 proX glycine betaine transporter periplasmic subunit; Provisional
Probab=43.60  E-value=18  Score=15.02  Aligned_cols=25  Identities=36%  Similarity=0.279  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             4437899999999984100002466543
Q gi|254780598|r    2 QKLFLAVGVSSLALASFCSAQAADPVRR   29 (205)
Q Consensus         2 kk~~la~av~~lal~~~~~A~Aad~~~~   29 (205)
                      ||++++.++   +++..++|+|+|++.+
T Consensus         4 ~~~l~~~a~---~~~~~~~a~a~~~pg~   28 (332)
T PRK11119          4 HKVLLATAL---ATLISTSAFAADLPGK   28 (332)
T ss_pred             HHHHHHHHH---HHHHHHHHHHCCCCCC
T ss_conf             888999999---9985227652558999


No 173
>pfam06518 DUF1104 Protein of unknown function (DUF1104). This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.
Probab=43.59  E-value=19  Score=14.96  Aligned_cols=23  Identities=30%  Similarity=0.223  Sum_probs=16.3

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             94437899999999984100002466
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADP   26 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~   26 (205)
                      |||++..+.+++|+++.   ..|+|-
T Consensus         1 MKk~~~~~l~~aL~~s~---l~AaDF   23 (142)
T pfam06518         1 MKKALSLCLVGALLFSF---LNAADF   23 (142)
T ss_pred             CHHHHHHHHHHHHHHHH---HCHHHH
T ss_conf             92689999999999998---552642


No 174
>pfam09403 FadA Adhesion protein FadA. FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices.
Probab=43.11  E-value=17  Score=15.14  Aligned_cols=10  Identities=30%  Similarity=0.521  Sum_probs=7.6

Q ss_pred             CHHHHHHHHH
Q ss_conf             9443789999
Q gi|254780598|r    1 MQKLFLAVGV   10 (205)
Q Consensus         1 Mkk~~la~av   10 (205)
                      |||+++...+
T Consensus         1 MkK~ll~~~l   10 (126)
T pfam09403         1 MKKILLCSML   10 (126)
T ss_pred             CHHHHHHHHH
T ss_conf             9169999999


No 175
>CHL00132 psaF photosystem I subunit III; Validated
Probab=42.89  E-value=20  Score=14.79  Aligned_cols=31  Identities=23%  Similarity=0.113  Sum_probs=20.4

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             9443789999999998410000246654356
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRAH   31 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~   31 (205)
                      ||+++..+.+..+.++.+-....||...-.|
T Consensus         1 Mrr~~a~~l~~~l~~~~ap~~a~AdvagLtP   31 (185)
T CHL00132          1 MKKFNLIFLLAALLLTLNPNIALADVAGLTP   31 (185)
T ss_pred             CHHHHHHHHHHHHHHHCCCCHHHCCCCCCCC
T ss_conf             9069999999999993686221101138860


No 176
>PRK09967 putative outer membrane lipoprotein; Provisional
Probab=42.40  E-value=21  Score=14.74  Aligned_cols=20  Identities=30%  Similarity=0.270  Sum_probs=11.2

Q ss_pred             CHHHHH-HHHHHHHHHHHCCC
Q ss_conf             944378-99999999984100
Q gi|254780598|r    1 MQKLFL-AVGVSSLALASFCS   20 (205)
Q Consensus         1 Mkk~~l-a~av~~lal~~~~~   20 (205)
                      |+|.++ .+.+++|+|+++++
T Consensus         1 m~k~~~~~~l~~~l~lsgC~s   21 (160)
T PRK09967          1 MIKHLVAPLIFTSLILTGCQS   21 (160)
T ss_pred             CHHHHHHHHHHHHHHHHHCCC
T ss_conf             907899999999999984589


No 177
>TIGR02791 VirB5 P-type DNA transfer protein VirB5; InterPro: IPR014158   This entry contains VirB5, a protein that is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation . VirB5 is homologous to the IncN (N-type) conjugation system protein TraC  as well as the P-type protein TrbJ and the F-type protein TraE ..
Probab=41.65  E-value=21  Score=14.68  Aligned_cols=16  Identities=31%  Similarity=0.432  Sum_probs=11.8

Q ss_pred             CHHHHHHHHHHHHHHH
Q ss_conf             9443789999999998
Q gi|254780598|r    1 MQKLFLAVGVSSLALA   16 (205)
Q Consensus         1 Mkk~~la~av~~lal~   16 (205)
                      |||++++.++|+|.|.
T Consensus         1 mKK~~~~~a~salml~   16 (233)
T TIGR02791         1 MKKHAVSCALSALMLV   16 (233)
T ss_pred             CHHHHHHHHHHHHHHH
T ss_conf             9256799999999999


No 178
>pfam07585 DUF1551 Protein of unknown function (DUF1551). A family of proteins identified in Rhodopirellula baltica.
Probab=41.42  E-value=21  Score=14.66  Aligned_cols=50  Identities=16%  Similarity=0.170  Sum_probs=35.0

Q ss_pred             CCCCEEEE--EEEEEEEECCCCCEEEEEEEEEEECCCC-----------------------------CCCCEEEEEEEEE
Q ss_conf             77520479--9734661004886799999999750565-----------------------------5662269999985
Q gi|254780598|r  155 TPIAIGGT--AGVGVEVGGLSESLVARLEYRASKYSKV-----------------------------EGFYNTISLGVGM  203 (205)
Q Consensus       155 ~~~~~g~~--~G~Gvey~~it~~~~~r~EY~y~df~~~-----------------------------~~~~~~~~~G~~y  203 (205)
                      +++..+++  +++-+.| .+|++|++++.|+..-+++|                             +.-.|=+.+|+-|
T Consensus       258 ~~~~fa~v~e~~~~~~y-~~t~~~~l~~GY~~l~~s~V~ra~dqid~~~~~~~~~~~~~p~~~~~~s~~~~~Gl~~G~e~  336 (338)
T pfam07585       258 ARDRFAFVPELGLNLGY-QLTPNLSLTVGYSFLYLSDVALAGDQIDRNVNTANLTGAVRPAFVDSNSSLLAHGLTFGGEY  336 (338)
T ss_pred             ECCEEEEEEECCEEEEE-EECCCEEEEEEEEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEEEEEEE
T ss_conf             11308998424079999-96487899986789998143652120155668888877667623434687599715876898


Q ss_pred             EC
Q ss_conf             39
Q gi|254780598|r  204 KF  205 (205)
Q Consensus       204 kF  205 (205)
                      +|
T Consensus       337 ~f  338 (338)
T pfam07585       337 SF  338 (338)
T ss_pred             EC
T ss_conf             39


No 179
>PRK04517 hypothetical protein; Provisional
Probab=41.40  E-value=16  Score=15.28  Aligned_cols=25  Identities=32%  Similarity=0.065  Sum_probs=15.9

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCC-CCC
Q ss_conf             944378999999999841000024-665
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAA-DPV   27 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aa-d~~   27 (205)
                      ||.+...+  ++++|+.+++|+|+ .+.
T Consensus         1 MK~~~~~~--~ll~l~~s~sa~A~vtL~   26 (216)
T PRK04517          1 MKLIKPLT--CLLALAMSGSAFADVTVE   26 (216)
T ss_pred             CCCHHHHH--HHHHHHHHHHHHHHCEEE
T ss_conf             96027999--999999713553320783


No 180
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=41.39  E-value=21  Score=14.66  Aligned_cols=25  Identities=28%  Similarity=0.227  Sum_probs=14.1

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             94437899999999984100002466
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADP   26 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~   26 (205)
                      |+|-++.+.+++++++ +++|.|.+.
T Consensus         1 m~~r~l~~~~~~~~~~-~~~a~a~~~   25 (288)
T TIGR03431         1 MLRRLILSLVAAFMLI-SSNAQAEDW   25 (288)
T ss_pred             CCHHHHHHHHHHHHHH-CCHHHHCCC
T ss_conf             9088999999999997-432243048


No 181
>PRK11397 dacD D-alanyl-D-alanine carboxypeptidase; Provisional
Probab=41.16  E-value=22  Score=14.64  Aligned_cols=27  Identities=19%  Similarity=0.199  Sum_probs=10.8

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             944378999999999841000024665
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPV   27 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~   27 (205)
                      |||++.++++.++.+..++.+++.-..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~   30 (390)
T PRK11397          4 KRRLIIAASLFVFNLSSAFAAENIPFS   30 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             789999999999999998740457789


No 182
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=40.98  E-value=22  Score=14.62  Aligned_cols=26  Identities=27%  Similarity=0.307  Sum_probs=20.2

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             944378999999999841000024665
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPV   27 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~   27 (205)
                      ||+++-++..+++.+.++ .++|.|.-
T Consensus         1 m~~~~~~~~~~~~s~~~~-~~~a~~h~   26 (114)
T PRK09838          1 MKKALKVAMFSLFSVIGF-NAQANEHH   26 (114)
T ss_pred             CCHHHHHHHHHHHHHHHH-HHHCCCCC
T ss_conf             932789999999998732-32025653


No 183
>PHA00025 major coat protein
Probab=40.84  E-value=19  Score=14.92  Aligned_cols=27  Identities=22%  Similarity=0.224  Sum_probs=20.6

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             944378999999999841000024665
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPV   27 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~   27 (205)
                      |||.....++.+.++.....++|||+.
T Consensus         1 mkks~v~ka~~a~~l~vsa~sFAAe~~   27 (76)
T PHA00025          1 MKKSKVKKASGAVTLLVSAGSFAAEPN   27 (76)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             926699999765553001210003776


No 184
>pfam05643 DUF799 Putative bacterial lipoprotein (DUF799). This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=40.72  E-value=20  Score=14.81  Aligned_cols=16  Identities=31%  Similarity=0.472  Sum_probs=11.0

Q ss_pred             CHHHHHHHHHHHHHHHH
Q ss_conf             94437899999999984
Q gi|254780598|r    1 MQKLFLAVGVSSLALAS   17 (205)
Q Consensus         1 Mkk~~la~av~~lal~~   17 (205)
                      |||+++.+++.. .|++
T Consensus         1 mK~lil~l~~~l-~L~g   16 (215)
T pfam05643         1 MKPLILGLAAVL-ALSA   16 (215)
T ss_pred             CHHHHHHHHHHH-HHHH
T ss_conf             931499999999-9862


No 185
>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein. This ABC transporter periplasmic substrate binding protein component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). The protein contains a match to pfam01547 for the "Bacterial extracellular solute-binding protein" domain.
Probab=40.56  E-value=19  Score=14.96  Aligned_cols=27  Identities=33%  Similarity=0.429  Sum_probs=21.2

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             944378999999999841000024665
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPV   27 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~   27 (205)
                      |||+.++++.++|+.+...+|+|++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~a~a~~~~   38 (367)
T TIGR03227        12 LRRFALAAGAAALLQGAAAPAQAAAVV   38 (367)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf             999999999999986423555458659


No 186
>pfam08139 LPAM_1 Prokaryotic membrane lipoprotein lipid attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.
Probab=40.21  E-value=20  Score=14.80  Aligned_cols=13  Identities=38%  Similarity=0.388  Sum_probs=9.5

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             9443789999999
Q gi|254780598|r    1 MQKLFLAVGVSSL   13 (205)
Q Consensus         1 Mkk~~la~av~~l   13 (205)
                      |||+++...+..+
T Consensus         1 Mkk~~~l~~~~l~   13 (26)
T pfam08139         1 MKKLLLLLLALLL   13 (26)
T ss_pred             CHHHHHHHHHHHH
T ss_conf             9669999999999


No 187
>COG4771 FepA Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism]
Probab=39.15  E-value=23  Score=14.47  Aligned_cols=44  Identities=9%  Similarity=0.079  Sum_probs=27.8

Q ss_pred             EEE-EEEEEEEECCCCCEEEEEEEEEE---EC-------------CCCCCCCEEEEEEEEEEC
Q ss_conf             479-97346610048867999999997---50-------------565566226999998539
Q gi|254780598|r  160 GGT-AGVGVEVGGLSESLVARLEYRAS---KY-------------SKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       160 g~~-~G~Gvey~~it~~~~~r~EY~y~---df-------------~~~~~~~~~~~~G~~ykF  205 (205)
                      .|+ +++|+-| .+|+||++++.-.-.   ++             +.+. +--++.++|.|+|
T Consensus       639 ~Yti~~~ga~y-~~tkn~sL~agV~NLfDK~l~~~~~~a~~~g~~~y~e-pGRry~~s~~~~F  699 (699)
T COG4771         639 AYTIVDLGATY-DVTKNVSLNAGVYNLFDKRLSRDGNYAFGAGAYTYNE-PGRRYYMSLNYSF  699 (699)
T ss_pred             CEEEEECCEEE-EECCCEEEEHHHHHHCCHHHCCCCCCCCCCCCCCCCC-CCCEEEEEEECCC
T ss_conf             64898424146-6323426601012204422123554333445432236-7725899853049


No 188
>TIGR03519 Bac_Flav_fam_1 Bacteroidetes-specific putative membrane protein. This model describes a protein family unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Flavobacterium johnsoniae, that exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss a this motility.
Probab=38.62  E-value=24  Score=14.42  Aligned_cols=11  Identities=27%  Similarity=0.416  Sum_probs=8.4

Q ss_pred             CHHHHHHHHHH
Q ss_conf             94437899999
Q gi|254780598|r    1 MQKLFLAVGVS   11 (205)
Q Consensus         1 Mkk~~la~av~   11 (205)
                      |||+++.+.+.
T Consensus         1 Mkki~l~~~~~   11 (292)
T TIGR03519         1 MKKILLLLLLL   11 (292)
T ss_pred             CCCHHHHHHHH
T ss_conf             96057889999


No 189
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=38.48  E-value=21  Score=14.65  Aligned_cols=37  Identities=24%  Similarity=0.185  Sum_probs=22.5

Q ss_pred             CHHHHHHHHHHH-HHHHHCCCCCCC----CCCCCCCCCCCCC
Q ss_conf             944378999999-999841000024----6654356666655
Q gi|254780598|r    1 MQKLFLAVGVSS-LALASFCSAQAA----DPVRRAHHGGRGV   37 (205)
Q Consensus         1 Mkk~~la~av~~-lal~~~~~A~Aa----d~~~~~~~~~~~~   37 (205)
                      |||+++...+++ |+|+++++.+.+    |+...........
T Consensus         3 ~kk~~~~~~~~~~l~lsGC~a~~tai~krnL~VqTkMS~TIf   44 (243)
T PRK13731          3 TKKLMMVALVSSTLALSGCGAMSTAIKKRNLEVKTQMSETIW   44 (243)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEECEECCCEE
T ss_conf             377579999999999715687677877357522220004388


No 190
>PRK10797 glutamate and aspartate transporter subunit; Provisional
Probab=38.28  E-value=19  Score=14.91  Aligned_cols=16  Identities=25%  Similarity=0.221  Sum_probs=8.3

Q ss_pred             CHHHHHHHHHHHHHHH
Q ss_conf             9443789999999998
Q gi|254780598|r    1 MQKLFLAVGVSSLALA   16 (205)
Q Consensus         1 Mkk~~la~av~~lal~   16 (205)
                      |||+++.+...++.++
T Consensus         3 ~kk~~~~~l~~~l~~~   18 (302)
T PRK10797          3 LRKLATALLALGLSAG   18 (302)
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             5899999999999999


No 191
>pfam05150 Legionella_OMP Legionella pneumophila major outer membrane protein precursor. This family consists of major outer membrane protein precursors from Legionella pneumophila.
Probab=38.24  E-value=24  Score=14.39  Aligned_cols=41  Identities=24%  Similarity=0.109  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             44378999999999841000024665435666665556345544444
Q gi|254780598|r    2 QKLFLAVGVSSLALASFCSAQAADPVRRAHHGGRGVVPTIATNRYVP   48 (205)
Q Consensus         2 kk~~la~av~~lal~~~~~A~Aad~~~~~~~~~~~~~~~~~~~~~~~   48 (205)
                      ||..++    +|+|++ +.++|.++-+ +-.+.-...|.....+..+
T Consensus         5 KKtt~A----vl~lgs-s~~~AGtMGP-VcTPGnVtVPCe~~~wd~g   45 (297)
T pfam05150         5 KKTAAA----VFALGS-SALFAGTMGP-VCTPGNVTVPCERTAWDIG   45 (297)
T ss_pred             HHHHHH----HHHHHC-CCEECCCCCC-CCCCCCEECCCCCCCEECC
T ss_conf             777999----987621-3300244677-4578855047876520213


No 192
>PRK10154 hypothetical protein; Provisional
Probab=37.11  E-value=23  Score=14.48  Aligned_cols=27  Identities=30%  Similarity=0.452  Sum_probs=19.2

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             944378999999999841000024665
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPV   27 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~   27 (205)
                      ||..+...+...+.+..++.|+|.|-.
T Consensus         1 mks~~t~sa~l~l~~~~~~~a~anD~~   27 (134)
T PRK10154          1 MKSVFTISASLAISLMLCCTAQANDHK   27 (134)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             941323489999999876544227746


No 193
>PRK09818 putative kinase inhibitor; Provisional
Probab=36.96  E-value=20  Score=14.84  Aligned_cols=27  Identities=30%  Similarity=0.306  Sum_probs=16.3

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             9443789999999998410000246654356
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRAH   31 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~   31 (205)
                      |||+++.+.++.+.+    +|+|+......+
T Consensus         1 ~~~~~~~~~~~~~~~----~a~a~~f~ltS~   27 (183)
T PRK09818          1 MKKLIVSSVLAFITF----SAQAAAFQVTSN   27 (183)
T ss_pred             CHHHHHHHHHHHHHC----CCCCCCEEEECC
T ss_conf             913899999999744----355686488787


No 194
>PRK10316 hypothetical protein; Provisional
Probab=36.62  E-value=20  Score=14.80  Aligned_cols=29  Identities=24%  Similarity=0.304  Sum_probs=18.9

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             9443789999999998410000246654356
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRAH   31 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~   31 (205)
                      |||++++..+++...  .+++.|++....++
T Consensus         1 ~~r~l~a~~l~~~l~--~~~~~aa~~a~~~~   29 (209)
T PRK10316          1 MKRLIMATMVTAILA--SSTVWAADNAAAQQ   29 (209)
T ss_pred             CHHHHHHHHHHHHHH--CCHHHHHHHHCCCC
T ss_conf             926999999999982--35145544311430


No 195
>PRK11443 hypothetical protein; Provisional
Probab=36.46  E-value=19  Score=14.86  Aligned_cols=13  Identities=15%  Similarity=0.161  Sum_probs=9.1

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             9443789999999
Q gi|254780598|r    1 MQKLFLAVGVSSL   13 (205)
Q Consensus         1 Mkk~~la~av~~l   13 (205)
                      |||+.+++.+..|
T Consensus         1 Mk~~~~~~~~lll   13 (120)
T PRK11443          1 MKKFIAPLLALLV   13 (120)
T ss_pred             CHHHHHHHHHHHH
T ss_conf             9158999999999


No 196
>COG4549 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.40  E-value=24  Score=14.36  Aligned_cols=23  Identities=26%  Similarity=0.127  Sum_probs=14.3

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             94437899999999984100002
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQA   23 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~A   23 (205)
                      |||+.+.+.+..++..++..|.|
T Consensus         1 mk~i~~~l~~~~~~~~~~~~AsA   23 (178)
T COG4549           1 MKKIKLSLCALFALSLSTFTASA   23 (178)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCEE
T ss_conf             94036889999998752332217


No 197
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=35.70  E-value=16  Score=15.25  Aligned_cols=20  Identities=50%  Similarity=0.411  Sum_probs=12.6

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             94437899999999984100002466
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADP   26 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~   26 (205)
                      |||+++..      ++.++.|+|+|-
T Consensus         1 mkk~~~l~------~a~a~~Afa~e~   20 (105)
T PRK08482          1 MKKLLLLF------LALAGVAFAADG   20 (105)
T ss_pred             CHHHHHHH------HHHHHHHHHHCC
T ss_conf             91599999------999999876047


No 198
>pfam02402 Lysis_col Lysis protein. These small bacterial proteins are required for colicin release and partial cell lysis. This family contains lysis proteins for several different forms of colicin. Bacillus subtilis lytA has been included in this family, the similarity is not highly significant, however it is also a short protein, that is involved in secretion of other proteins (Bateman A pers. obs.).
Probab=35.61  E-value=17  Score=15.16  Aligned_cols=22  Identities=27%  Similarity=0.321  Sum_probs=10.6

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9443789999999998410000
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQ   22 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~   22 (205)
                      |||++....+....+..++.|+
T Consensus         1 Mkki~~~~i~~~~~~L~aCQaN   22 (46)
T pfam02402         1 MKKILFIGILLLTVLLSACQAN   22 (46)
T ss_pred             CCEEEEHHHHHHHHHHHHHHHH
T ss_conf             9242013999999999985550


No 199
>PRK09360 lamB maltoporin; Provisional
Probab=34.89  E-value=27  Score=14.10  Aligned_cols=24  Identities=38%  Similarity=0.246  Sum_probs=13.7

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             94437899999999984100002466
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADP   26 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~   26 (205)
                      |||+.|+++|++.+  ++.+|+|.|-
T Consensus         5 ~~~~~~a~~~~~~~--~~~~a~a~eF   28 (417)
T PRK09360          5 LRKLPLAVAVAAGL--LSTQAMAVDF   28 (417)
T ss_pred             HHHHHHHHHHHHHH--CCCCEEEEEE
T ss_conf             32578999999764--0465148985


No 200
>pfam11106 YjbE Exopolysaccharide production protein YjbE. YjbE is part of a four gene operon which is involved in exopolysaccharide production. The expression of YjbE is higher than the rest of the operon yjbEFGH. It appears to be restricted to Enterobacteriaceae.
Probab=34.38  E-value=28  Score=14.05  Aligned_cols=25  Identities=32%  Similarity=0.260  Sum_probs=13.9

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             944378999999999841000024665
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPV   27 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~   27 (205)
                      |||++..+-.  ++..++.+++|+++.
T Consensus         1 mkkil~gifa--i~al~a~s~~aapv~   25 (80)
T pfam11106         1 MKKILSGIFA--IAALAATSAQAAPVQ   25 (80)
T ss_pred             CHHHHHHHHH--HHHHHHHHCCCCCEE
T ss_conf             9037788899--999776102336612


No 201
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=33.83  E-value=29  Score=14.00  Aligned_cols=25  Identities=36%  Similarity=0.246  Sum_probs=12.8

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9443789999999998410000246
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAAD   25 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad   25 (205)
                      ||+.++...+..+++.+++++.+++
T Consensus         1 Mk~~~~~~~l~l~la~~~s~~~~~~   25 (170)
T COG2825           1 MKKRLLAALLGLALATSASAAQAAP   25 (170)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9638999999999998877775275


No 202
>PRK10957 iron-enterobactin transporter periplasmic binding protein; Provisional
Probab=33.45  E-value=29  Score=13.97  Aligned_cols=32  Identities=31%  Similarity=0.224  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             44378999999999841000024665435666
Q gi|254780598|r    2 QKLFLAVGVSSLALASFCSAQAADPVRRAHHG   33 (205)
Q Consensus         2 kk~~la~av~~lal~~~~~A~Aad~~~~~~~~   33 (205)
                      +|..|++.+.+++++++++|++++-+......
T Consensus         5 ~~~~~~~~~~~~~~~g~~~~~~~~~prtV~h~   36 (319)
T PRK10957          5 PLYRLALLLLGLLLSGIAAAQAADWPRTITDS   36 (319)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC
T ss_conf             78999999999997478755458988789719


No 203
>pfam00879 Defensin_propep Defensin propeptide.
Probab=32.41  E-value=30  Score=13.88  Aligned_cols=29  Identities=38%  Similarity=0.358  Sum_probs=16.7

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             944378999999999841000024665435666
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRAHHG   33 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~~~   33 (205)
                      ||++.|..++..+++    .|+|-.+..+....
T Consensus         1 MrTl~lLaA~lL~al----qaQAeplq~~~de~   29 (52)
T pfam00879         1 MRTLALLAALLLLAL----QAQAEPLQERADEA   29 (52)
T ss_pred             CCHHHHHHHHHHHHH----HHHCCCCCCCCCCC
T ss_conf             913999999999999----98605642332325


No 204
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=32.24  E-value=30  Score=13.86  Aligned_cols=25  Identities=36%  Similarity=0.353  Sum_probs=15.3

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             94437899999999984100002466
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADP   26 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~   26 (205)
                      |||.+++++++...+. +.+++|...
T Consensus         1 ~~~~~~~~~~~~~~~~-~~~~~a~~~   25 (413)
T PRK10173          1 MKKSLLAAAVAGAVLL-SSAAQAQTV   25 (413)
T ss_pred             CCHHHHHHHHHHHHHH-HHHHHCCCC
T ss_conf             9245999999999998-877740589


No 205
>TIGR01653 lactococcin_972 bacteriocin, lactococcin 972 family; InterPro: IPR006540    These sequences represent bacteriocins related to lactococcin 972 . Members tend to be found in association with a seven transmembrane putative immunity protein. .
Probab=32.23  E-value=31  Score=13.86  Aligned_cols=25  Identities=32%  Similarity=0.190  Sum_probs=15.6

Q ss_pred             CHHHH---HHHHHHHHHHHHCCCCCCCC
Q ss_conf             94437---89999999998410000246
Q gi|254780598|r    1 MQKLF---LAVGVSSLALASFCSAQAAD   25 (205)
Q Consensus         1 Mkk~~---la~av~~lal~~~~~A~Aad   25 (205)
                      |||+.   +++.++.+.|+....+.++-
T Consensus         1 MkkK~ki~v~~~~~~~iL~~t~gg~~~q   28 (149)
T TIGR01653         1 MKKKVKIGVVSLVSLTILATTLGGLAAQ   28 (149)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHEEH
T ss_conf             9504788999999999875446553001


No 206
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=32.22  E-value=31  Score=13.86  Aligned_cols=31  Identities=29%  Similarity=0.210  Sum_probs=13.9

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             9443789999999998410000246654356
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRAH   31 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~   31 (205)
                      ||++++..+.++++++++.++-+++++.+..
T Consensus         4 ~~~~~l~~A~~A~~~~~~~a~A~~~Vv~SIK   34 (318)
T COG4531           4 HKKTLLLSALFALLLGSAPAAAAAAVVTSIK   34 (318)
T ss_pred             HHHHHHHHHHHHHHHCCCHHCCCCCCEEEEC
T ss_conf             5779999999999844530004632146504


No 207
>PRK10598 hypothetical protein; Provisional
Probab=31.81  E-value=31  Score=13.82  Aligned_cols=15  Identities=33%  Similarity=0.470  Sum_probs=9.4

Q ss_pred             CHHHHHHHHHHHHHH
Q ss_conf             944378999999999
Q gi|254780598|r    1 MQKLFLAVGVSSLAL   15 (205)
Q Consensus         1 Mkk~~la~av~~lal   15 (205)
                      |||+++++++....+
T Consensus         1 mkk~~l~~~l~l~~l   15 (186)
T PRK10598          1 MKKFLLAAALLVSGL   15 (186)
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             912699999999999


No 208
>pfam10614 Tafi-CsgF Curli production assembly/transport component CsgF. Fimbriae are cell-surface protein polymers, of eg. E coli and Salmonella spp, that mediate interactions important for host and environmental persistence, development of biofilms, motility, colonisation and invasion of cells, and conjugation. Four general assembly pathways for different fimbriae have been proposed, one of which is extracellular nucleation-precipitation (ENP), that differs from the others in that fibre-growth occurs extracellularly. Thin aggregative fimbriae (Tafi) are the only fimbriae dependent on the ENP pathway. Tafi were first identified in Salmonella spp and the controlling operon termed agf; however subsequent isolation of the homologous operon in E coli led to its being called csg. Tafi are known as curli because, in the absence of extracellular polysaccharides, their morphology appears curled; however, when expressed with such polysaccharides their morphology appears as a tangled amorphous m
Probab=31.26  E-value=32  Score=13.77  Aligned_cols=30  Identities=27%  Similarity=0.105  Sum_probs=19.5

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             94437899999999984100002466543566
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRAHH   32 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~~   32 (205)
                      ||++.+.+.+  +.+..+..|+|.+++..+.-
T Consensus         1 mk~~~~~~~l--~~l~~s~~a~A~elvy~f~N   30 (142)
T pfam10614         1 MKYIGVWAIL--LFLAASPTAWAGDLVYQPVN   30 (142)
T ss_pred             CCCHHHHHHH--HHHHHCCHHHHHHEEECCCC
T ss_conf             9142899999--99997043015133466459


No 209
>pfam01308 Chlam_OMP Chlamydia major outer membrane protein. The major outer membrane protein of Chlamydia contains four symmetrically spaced variable domains (VDs I to IV). This protein is believed to be an integral part to the pathogenesis, possibly adhesion. Along with the lipopolysaccharide, the major out membrane protein (MOMP) makes up the surface of the elementary body cell. The MOMP is the protein used to determine the different serotypes.
Probab=31.14  E-value=32  Score=13.76  Aligned_cols=23  Identities=35%  Similarity=0.262  Sum_probs=15.6

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             944378999999999841000024
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAA   24 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aa   24 (205)
                      |||++-.+.+.+. ++++.+-+|-
T Consensus         1 mkkllks~l~~aa-~~s~~SLqAl   23 (389)
T pfam01308         1 MKKLLKSALLFAA-LGSASSLQAL   23 (389)
T ss_pred             CHHHHHHHHHHHH-HCCCCCHHCC
T ss_conf             9378899999998-6464410003


No 210
>TIGR01098 3A0109s03R phosphonate ABC transporter, periplasmic phosphonate-binding protein; InterPro: IPR005770    Bacterial binding protein-dependent transport systems ,  are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown ,  that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems  to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices.    This is a family of periplasmic proteins which are part of the transport system for alkylphosphonate uptake. ; GO: 0015604 phosphonate transmembrane transporter activity, 0015716 phosphonate transport, 0030288 outer membrane-bounded periplasmic space.
Probab=30.12  E-value=33  Score=13.66  Aligned_cols=18  Identities=17%  Similarity=0.187  Sum_probs=12.5

Q ss_pred             CHHHHHHHHHHHHHHHHC
Q ss_conf             944378999999999841
Q gi|254780598|r    1 MQKLFLAVGVSSLALASF   18 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~   18 (205)
                      |||+++.+++.++++.+.
T Consensus         1 mkr~~~~~~~~~~~~~~~   18 (299)
T TIGR01098         1 MKRLLALLAALLVASLAA   18 (299)
T ss_pred             CHHHHHHHHHHHHHHHHH
T ss_conf             947889999999999998


No 211
>PRK04792 tolB translocation protein TolB; Provisional
Probab=30.08  E-value=33  Score=13.66  Aligned_cols=28  Identities=25%  Similarity=0.140  Sum_probs=14.8

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             9443789999999998410000246654356
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRAH   31 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~   31 (205)
                      |||+++++.+..+.+  +..|+|. +..+-.
T Consensus         2 ~k~~~~~l~lll~~~--s~~A~A~-L~IeIt   29 (450)
T PRK04792          2 LKRLILGLFVLLLSF--SQVANAA-LELVIT   29 (450)
T ss_pred             CHHHHHHHHHHHHHH--HHHHEEE-EEEEEE
T ss_conf             389999999999986--5752024-999995


No 212
>PRK10884 putative signal transduction protein; Provisional
Probab=29.36  E-value=29  Score=13.98  Aligned_cols=28  Identities=32%  Similarity=0.367  Sum_probs=18.8

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             94437899999999984100002466543
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRR   29 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~   29 (205)
                      |+|+-+. .++.+.++.+..++|....+.
T Consensus         1 m~~l~~~-~~~~l~~~~~~~~~aeeTrYV   28 (206)
T PRK10884          1 MPKLRLI-GLTLLALSATAVSHAEETRYV   28 (206)
T ss_pred             CCCCCHH-HHHHHHHHHHHHHHHCCCEEE
T ss_conf             9740139-999999864577752141577


No 213
>TIGR01779 TonB-B12 TonB-dependent vitamin B12 receptor; InterPro: IPR010101   The outer membrane is an essential component of Gram-negative bacteria, providing them with increased resistance to antibiotics, digestive enzymes, detergents and immune surveillance . The outer membrane is permeable to small hydrophilic molecules because of the presence of aqueous diffusion channels (e.g. porins). Small molecules present at high concentration diffuse down their concentration gradients into the periplasmic space. Porins are inadequate for the efficient acquisition of iron siderophores, cobalamins (Cbl), and other molecules that are present at very low concentrations and that are too bulky to pass through the lumen of the porin. Another class of outer membrane proteins binds these substrates with high specificity and carries out active transport across the outer membrane. This active transport process requires an energy source and a second protein, TonB. Outer membrane active-transport proteins interact with the transperiplasmic protein TonB through a conserved sequence, the "Ton-box". Interaction with TonB couples the energy of the proton motive force of the inner membrane to drive an outer membrane transport cycle .    To date, crystal structures of four TonB-dependent transporters have been solved. Three of these are iron-siderophore transporters: ferrichrome transporter FhuA , ; ferric enterobactin transporter FepA ; and ferric dicitrate transporter FecA . The fourth structure is the cobalamin transporter BtuB . All of these structures are composed of two domains, a conserved N-terminal globular domain (hatch) and a 22-stranded beta-barrel (barrel). The hatch domain resides within the barrel and occludes the large pore of the large barrel domain. The hatch domains are composed of a central core of four beta-strands connected by loops. The conserved Ton-box is located near the periplasmic opening of the barrel and precedes the conserved hatch core. The barrels have large extracellular loops and short periplasmic turns connecting the beta-strands. TonB-dependent transporters bind their cognate substrates using residues from hatch loops, from the interior surfaces of beta-strands in the barrel wall, and from extracellular loops of the barrel .    This entry represents the TonB-dependent outer membrane receptor found in gamma-proteobacteria responsible for translocating the cobalt-containing vitamin B12 (cobalamin). ; GO: 0004872 receptor activity, 0015889 cobalamin transport, 0016020 membrane.
Probab=29.00  E-value=34  Score=13.61  Aligned_cols=61  Identities=18%  Similarity=0.090  Sum_probs=29.5

Q ss_pred             EEEEEEEEEECCCEEEEEEEEEEEEEEEECC--CCCCC---CCCCEEEEEEEEEEEECCCCCEEEEEE
Q ss_conf             9998975431276778988544776444313--45556---775204799734661004886799999
Q gi|254780598|r  119 SLRIRGGYEVSDSLLLYATVGPDVAQKYETG--KAGEI---TPIAIGGTAGVGVEVGGLSESLVARLE  181 (205)
Q Consensus       119 ~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~--~~~~~---~~~~~g~~~G~Gvey~~it~~~~~r~E  181 (205)
                      ++.++.+|.|++++.+++++=-+-.+.+++.  ..+..   ...+.--.+=+|..|  .+|.|..++.
T Consensus       238 ~~~~~~~h~F~~~w~~f~~~~~y~~~~~YD~y~sfG~~~~~~~~~~~q~~~~G~~~--~~e~~~~~L~  303 (644)
T TIGR01779       238 SLLLAGGHRFDERWSLFVRVLRYENRNDYDAYSSFGSRDYDEAEKGEQSLVGGRAR--YSERDASKLT  303 (644)
T ss_pred             CCCCCEEEEECCCCCEEEEEEEECCCCCCCCEECCCCCCHHHHHCCCCEEEEEEEE--CCCCEEEEEE
T ss_conf             42310357876754202356420462101541248985511220355002443222--1764023246


No 214
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in  Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=28.71  E-value=14  Score=15.65  Aligned_cols=18  Identities=17%  Similarity=0.248  Sum_probs=8.1

Q ss_pred             CCCCEEEEEEEEEEECCC
Q ss_conf             488679999999975056
Q gi|254780598|r  172 LSESLVARLEYRASKYSK  189 (205)
Q Consensus       172 it~~~~~r~EY~y~df~~  189 (205)
                      ....++=-+||.|-+-.+
T Consensus       291 ~~~~~TR~~EyK~L~~~~  308 (390)
T TIGR00031       291 LDVDITRIVEYKHLTPTG  308 (390)
T ss_pred             CCCCCCEEEEEEEECCCC
T ss_conf             769743256544326677


No 215
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=28.27  E-value=36  Score=13.49  Aligned_cols=24  Identities=38%  Similarity=0.347  Sum_probs=14.8

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             944378999999999841000024665
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPV   27 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~   27 (205)
                      |||..+.++.++|++++  +++ ||..
T Consensus         1 Mk~~~~i~~~~~La~s~--~~~-adin   24 (252)
T COG4588           1 MKKAVLILLIFLLAFSS--AAN-ADIN   24 (252)
T ss_pred             CCHHHHHHHHHHHHHHH--HHC-CEEE
T ss_conf             93368899999997246--404-5178


No 216
>PRK11372 lysozyme inhibitor; Provisional
Probab=28.15  E-value=29  Score=13.97  Aligned_cols=14  Identities=29%  Similarity=0.294  Sum_probs=9.3

Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             94437899999999
Q gi|254780598|r    1 MQKLFLAVGVSSLA   14 (205)
Q Consensus         1 Mkk~~la~av~~la   14 (205)
                      |||++.+.++..|+
T Consensus         3 MKkll~~~~~llLs   16 (109)
T PRK11372          3 MKKLLIICLPVLLT   16 (109)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             48899999999970


No 217
>COG4150 CysP ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=27.37  E-value=37  Score=13.40  Aligned_cols=24  Identities=25%  Similarity=0.185  Sum_probs=15.8

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             944378999999999841000024
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAA   24 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aa   24 (205)
                      |||.++..++.+.++++...|.|.
T Consensus         6 mkk~~~~~~~~~~L~a~~~qa~as   29 (341)
T COG4150           6 MKKNLLIGATILALFAALLQAGAS   29 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             889887669999999998761467


No 218
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=26.72  E-value=38  Score=13.38  Aligned_cols=25  Identities=32%  Similarity=0.325  Sum_probs=13.3

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             944378999999999841000024665
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPV   27 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~   27 (205)
                      |||.+++ -+++++|.+. .++-+-++
T Consensus         1 Mrk~~~~-~l~~~lLvGC-sS~~~i~~   25 (123)
T COG5633           1 MRKLCLL-SLALLLLVGC-SSHQEILV   25 (123)
T ss_pred             CCEEHHH-HHHHHHHHCC-CCCCCCCC
T ss_conf             9300389-9999994204-78877522


No 219
>pfam07273 DUF1439 Protein of unknown function (DUF1439). This family consists of several hypothetical bacterial proteins of around 190 residues in length. Several members of this family are annotated as being putative lipoproteins and are often known as YceB. The function of this family is unknown.
Probab=26.39  E-value=39  Score=13.30  Aligned_cols=18  Identities=33%  Similarity=0.421  Sum_probs=11.2

Q ss_pred             CHHHHHHHHHHHHHHHHC
Q ss_conf             944378999999999841
Q gi|254780598|r    1 MQKLFLAVGVSSLALASF   18 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~   18 (205)
                      ||++++++.++++.++++
T Consensus         1 Mk~~~~~~~~l~~~LsgC   18 (177)
T pfam07273         1 MKKLLLLILLLVLLLSGC   18 (177)
T ss_pred             CCHHHHHHHHHHHHHHCC
T ss_conf             914899999999997155


No 220
>COG5510 Predicted small secreted protein [Function unknown]
Probab=26.25  E-value=39  Score=13.29  Aligned_cols=20  Identities=30%  Similarity=0.240  Sum_probs=9.2

Q ss_pred             CHHHH---HHHHHHHHHHHHCCC
Q ss_conf             94437---899999999984100
Q gi|254780598|r    1 MQKLF---LAVGVSSLALASFCS   20 (205)
Q Consensus         1 Mkk~~---la~av~~lal~~~~~   20 (205)
                      |||.+   .++.+++..+++...
T Consensus         2 mk~t~l~i~~vll~s~llaaCNT   24 (44)
T COG5510           2 MKKTILLIALVLLASTLLAACNT   24 (44)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             04899999999999999988663


No 221
>PRK10918 phosphate transporter subunit; Provisional
Probab=26.16  E-value=40  Score=13.28  Aligned_cols=28  Identities=21%  Similarity=0.296  Sum_probs=19.7

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             9443789999999998410000246654
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVR   28 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~   28 (205)
                      ||.+..++++++|.+++.+++.|+++..
T Consensus         4 ~~~~~~~~~~~~ls~~a~~a~aa~~l~G   31 (346)
T PRK10918          4 MRTTVATVVAATLSMSAFSAFAAASLTG   31 (346)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             4889999999999887767876166124


No 222
>COG3133 SlyB Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=26.08  E-value=38  Score=13.35  Aligned_cols=18  Identities=39%  Similarity=0.429  Sum_probs=12.1

Q ss_pred             CHHHHHHHH-HHHHHHHHC
Q ss_conf             944378999-999999841
Q gi|254780598|r    1 MQKLFLAVG-VSSLALASF   18 (205)
Q Consensus         1 Mkk~~la~a-v~~lal~~~   18 (205)
                      |||..++++ +.+|.|...
T Consensus         1 M~k~~~avA~~~al~L~GC   19 (154)
T COG3133           1 MIKTALAVAALMALSLTGC   19 (154)
T ss_pred             CCHHHHHHHHHHHHHCCCC
T ss_conf             9425789999988740011


No 223
>pfam03482 SIC sic protein. Serotype M1 group A Streptococcus strains cause epidemic waves of human infections. This family includes the sic protein an extracellular protein (streptococcal inhibitor of complement) that inhibits human complement.
Probab=25.84  E-value=40  Score=13.25  Aligned_cols=22  Identities=18%  Similarity=0.153  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             4437899999999984100002
Q gi|254780598|r    2 QKLFLAVGVSSLALASFCSAQA   23 (205)
Q Consensus         2 kk~~la~av~~lal~~~~~A~A   23 (205)
                      |.+|++.+|++++|++..+.-|
T Consensus        11 ktLLFTSLvAVALLGATQPvSA   32 (306)
T pfam03482        11 KTLLFTSLVAVALLGATQPVSA   32 (306)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCH
T ss_conf             2567899999998447776524


No 224
>PRK03629 tolB translocation protein TolB; Provisional
Probab=25.52  E-value=41  Score=13.22  Aligned_cols=22  Identities=18%  Similarity=0.013  Sum_probs=14.5

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             944378999999999841000024
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAA   24 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aa   24 (205)
                      |||+++.+-...+.++..  |+|.
T Consensus         1 mk~~~~~~f~~lll~~~~--a~A~   22 (430)
T PRK03629          1 MKQALRVAFGFLILWASV--LHAE   22 (430)
T ss_pred             CCHHHHHHHHHHHHHHHH--HCEE
T ss_conf             901488899899987544--2237


No 225
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=25.34  E-value=41  Score=13.20  Aligned_cols=30  Identities=23%  Similarity=0.111  Sum_probs=17.3

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             944378999999999841000024665435
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRA   30 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~   30 (205)
                      ||+.+..++++++++..++.|+|-.-+..+
T Consensus         1 ~~~~~~~~~~a~a~~l~s~~A~AHGyv~~P   30 (475)
T PRK13211          1 MKKKLLKTLLAAALLLVSGGALAHGYVSSP   30 (475)
T ss_pred             CCCCHHHHHHHHHHHHCCCCCEECCCCCCC
T ss_conf             974135799999998615340314054797


No 226
>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane. The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.
Probab=25.24  E-value=41  Score=13.19  Aligned_cols=18  Identities=6%  Similarity=0.082  Sum_probs=8.0

Q ss_pred             EEEEEEEEECCCCCEEEEE
Q ss_conf             9973466100488679999
Q gi|254780598|r  162 TAGVGVEVGGLSESLVARL  180 (205)
Q Consensus       162 ~~G~Gvey~~it~~~~~r~  180 (205)
                      .+++|..| ++.+.-++|+
T Consensus       213 ~~~vg~ky-~lD~~~~vka  230 (274)
T cd07303         213 RFGIAAKY-QVDPDACFSA  230 (274)
T ss_pred             EEEEEEEE-ECCCCCEEEE
T ss_conf             69989889-6199977999


No 227
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=24.97  E-value=42  Score=13.16  Aligned_cols=20  Identities=25%  Similarity=0.114  Sum_probs=12.5

Q ss_pred             CHHHHHHHHHHHHHHHHCCC
Q ss_conf             94437899999999984100
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCS   20 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~   20 (205)
                      |+|++..+++.++.++....
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~   20 (551)
T PRK09558          1 MMKLLKGLVALALLAALALC   20 (551)
T ss_pred             CHHHHHHHHHHHHHHHHHHC
T ss_conf             92589999999999998740


No 228
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=24.85  E-value=42  Score=13.15  Aligned_cols=18  Identities=22%  Similarity=0.143  Sum_probs=10.7

Q ss_pred             CHHHHHHHHHHHHHHHHC
Q ss_conf             944378999999999841
Q gi|254780598|r    1 MQKLFLAVGVSSLALASF   18 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~   18 (205)
                      |||+++.+++++-+++..
T Consensus         2 mkk~~~~~~~a~g~~~l~   19 (234)
T PRK10523          2 MKKAILTALAAVGLFALM   19 (234)
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             058999999999999876


No 229
>cd01346 Maltoporin-like The Maltoporin-like channels (LamB porin) form a trimeric structure which facilitate the diffusion of maltodextrins and other sugars across the outer membrane of Gram-negative bacteria. The membrane channel is formed by an 18-strand antiparallel beta-barrel (18,22). Loop 3 folds into the core to constrict pore size. Long irregular loops are found on the extracelllular side, while short turns are in the periplasm.Tightly-bound water molecules are found in the eyelet of the passage, and only substrates that can displace and replace the broken hydrogen bonds are likely to enter the pore.  In the MPR structure, loops 4,6, and 9 have the greatest mobility and are highly variable; these are postulated to attract maltodextrins.
Probab=24.44  E-value=43  Score=13.10  Aligned_cols=113  Identities=16%  Similarity=0.106  Sum_probs=63.4

Q ss_pred             EEECC-CEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCC---CCCCCCCEE
Q ss_conf             64048-37998451013215556666212232148999897543127677898854477644431345---556775204
Q gi|254780598|r   85 NVEDS-CIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKA---GEITPIAIG  160 (205)
Q Consensus        85 n~q~~-~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~---~~~~~~~~g  160 (205)
                      .++.. +|-+..++-+.........  .....| .++.+|+-|.+++.+-+-..+||...+.+.....   .+-.+.-..
T Consensus       260 ~~~~~~~~~~~~~~~yq~~~~~~~~--~~~~~~-~s~~vRP~Y~~~~~~~~~~E~Gy~~~~~~~~~~~~~~~~~~K~TlA  336 (392)
T cd01346         260 EWQLGDRFGGGVALVYQRGNDPYGY--GDDYQW-ASVGVRPAYKWSDNFKTAFEVGYDTVKADDGGGVTDDGSLYKLTVA  336 (392)
T ss_pred             EEECCCCEEEEEEEEEEECCCCCCC--CCCEEE-EEEEEEEEEEECCCEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEE
T ss_conf             8824797625043656843577778--897599-9999886079868368999978999934888875567865799997


Q ss_pred             EEEEEEEEEECCCCCEEEEEEEEEEECCCC------------CCCCEEEEEEEEE
Q ss_conf             799734661004886799999999750565------------5662269999985
Q gi|254780598|r  161 GTAGVGVEVGGLSESLVARLEYRASKYSKV------------EGFYNTISLGVGM  203 (205)
Q Consensus       161 ~~~G~Gvey~~it~~~~~r~EY~y~df~~~------------~~~~~~~~~G~~y  203 (205)
                      .++-+|-++ .  .+=.+|+=+.|.+..+.            +.+.+.+.+||-.
T Consensus       337 ~t~s~g~~f-~--~RPelR~faTy~~w~~~~~~~~~~~~~~~~~~~~~~~fGvQ~  388 (392)
T cd01346         337 PTFSAGTDF-W--SRPELRFYATYSNWNDAALRAFTAFGSAFGNSKDGWNFGVQV  388 (392)
T ss_pred             EECCCCCCC-C--CCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf             704108897-7--896899999998143010122444454456888868999999


No 230
>TIGR01165 cbiN cobalt transport protein; InterPro: IPR003705   The cobalt transport protein CbiN is part of the active cobalt transport system involved in uptake of cobalt in to the cell involved with cobalamin biosynthesis (vitamin B12). It has been suggested that CbiN may function as the periplasmic binding protein component of the active cobalt transport system .; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process, 0016020 membrane.
Probab=24.14  E-value=43  Score=13.07  Aligned_cols=16  Identities=31%  Similarity=0.468  Sum_probs=9.7

Q ss_pred             CHHHH---HHHHHHHHHHH
Q ss_conf             94437---89999999998
Q gi|254780598|r    1 MQKLF---LAVGVSSLALA   16 (205)
Q Consensus         1 Mkk~~---la~av~~lal~   16 (205)
                      |||++   |.+.|++|++.
T Consensus         3 ~k~~ina~LL~~va~L~~l   21 (94)
T TIGR01165         3 MKKTINALLLAAVAALVVL   21 (94)
T ss_pred             CCCHHHHHHHHHHHHHHHH
T ss_conf             5308999999999999999


No 231
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=23.44  E-value=45  Score=13.00  Aligned_cols=21  Identities=10%  Similarity=0.165  Sum_probs=16.8

Q ss_pred             CHHHHHHHHHHHHHHHHCCCC
Q ss_conf             944378999999999841000
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSA   21 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A   21 (205)
                      |||+++.+.+.++++++++.-
T Consensus         4 ~~ki~~~~ii~~~~~~~vg~~   24 (336)
T PRK00059          4 AKKIVASLLVGVFIFSAVGCN   24 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHCCC
T ss_conf             799999999999999983025


No 232
>PRK09810 entericidin A; Provisional
Probab=23.42  E-value=45  Score=13.00  Aligned_cols=21  Identities=29%  Similarity=0.351  Sum_probs=13.6

Q ss_pred             CHHHHHHHHHHHHHHHHCCCC
Q ss_conf             944378999999999841000
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSA   21 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A   21 (205)
                      ||+++..+......+.....|
T Consensus         2 mkrli~lil~~~~ll~gcnta   22 (41)
T PRK09810          2 MKRLIVLVLLASTLLTGCNTA   22 (41)
T ss_pred             HHHHHHHHHHHHHHHHCCCCC
T ss_conf             389999999999998256212


No 233
>pfam04202 Mfp-3 Foot protein 3. Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=23.38  E-value=45  Score=12.99  Aligned_cols=18  Identities=28%  Similarity=0.340  Sum_probs=14.8

Q ss_pred             CHHHHHHHHHHHHHHHHC
Q ss_conf             944378999999999841
Q gi|254780598|r    1 MQKLFLAVGVSSLALASF   18 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~   18 (205)
                      |+++.++++|+.+++.++
T Consensus         1 Mnn~Sv~VLvaLVLIGsF   18 (71)
T pfam04202         1 MNNSSVSVLVALVLIGSF   18 (71)
T ss_pred             CCCCHHHHHHHHHHHHHE
T ss_conf             974005899999985120


No 234
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]
Probab=23.19  E-value=45  Score=12.97  Aligned_cols=26  Identities=35%  Similarity=0.368  Sum_probs=16.7

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             94437899999999984100002466
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADP   26 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~   26 (205)
                      |++++.++..+++++++++.++++.+
T Consensus         1 m~~~l~~~~~~all~~~~~~a~~~t~   26 (336)
T COG4143           1 MRRLLRALIGLALLVSAALGAQAATP   26 (336)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             90249999999999998657763485


No 235
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=22.44  E-value=47  Score=12.89  Aligned_cols=17  Identities=6%  Similarity=0.094  Sum_probs=9.1

Q ss_pred             CHHHHHHHHHHHHHHHH
Q ss_conf             94437899999999984
Q gi|254780598|r    1 MQKLFLAVGVSSLALAS   17 (205)
Q Consensus         1 Mkk~~la~av~~lal~~   17 (205)
                      |||.++.++++++++.+
T Consensus         1 mkkK~i~~~~~~~svl~   17 (285)
T PRK03002          1 MRGKHIFIITALISILM   17 (285)
T ss_pred             CCHHHHHHHHHHHHHHH
T ss_conf             96018999999999999


No 236
>COG3489 Predicted periplasmic lipoprotein [General function prediction only]
Probab=21.85  E-value=46  Score=12.96  Aligned_cols=21  Identities=33%  Similarity=0.354  Sum_probs=12.7

Q ss_pred             CHHHHHHHHHHHHHHHHCCCC
Q ss_conf             944378999999999841000
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSA   21 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A   21 (205)
                      |||++..++++.++++...++
T Consensus         4 ~~~l~~vLav~Ll~~~p~a~a   24 (359)
T COG3489           4 MRKLVTVLAVALLAACPPAPA   24 (359)
T ss_pred             HHHHHHHHHHHHHHCCCCCCC
T ss_conf             678889999999832898743


No 237
>COG3248 Tsx Nucleoside-binding outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=21.66  E-value=49  Score=12.80  Aligned_cols=32  Identities=28%  Similarity=0.173  Sum_probs=18.9

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             94437899999999984100002466543566666
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADPVRRAHHGGR   35 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~~~~~   35 (205)
                      |||.+||+.+   +++..+++.|.|.....|....
T Consensus         5 m~ktlLA~gl---laA~sa~~~~~d~~~~~~~~~~   36 (284)
T COG3248           5 MKKTLLAAGL---LAALSASFTANDAENDKPQYLS   36 (284)
T ss_pred             HHHHHHHHHH---HHHCCCCEECCCCCCCCCCCCC
T ss_conf             8899999889---8733663350201258866443


No 238
>COG5514 Uncharacterized conserved protein [Function unknown]
Probab=21.64  E-value=49  Score=12.81  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=13.6

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             94437899999999984100002466
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADP   26 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~   26 (205)
                      |||++.+    ..+++..++++|.|.
T Consensus         1 mkkivaa----~v~~s~~~~~hA~~d   22 (203)
T COG5514           1 MKKIVAA----QVIFSEPSPNHAPDD   22 (203)
T ss_pred             CHHHHHH----HHHHCCCCCCCCCCC
T ss_conf             9047665----777617774448876


No 239
>PRK10270 hypothetical protein; Provisional
Probab=21.61  E-value=49  Score=12.80  Aligned_cols=16  Identities=25%  Similarity=0.391  Sum_probs=11.3

Q ss_pred             CHHHHHHHHHHHHHHH
Q ss_conf             9443789999999998
Q gi|254780598|r    1 MQKLFLAVGVSSLALA   16 (205)
Q Consensus         1 Mkk~~la~av~~lal~   16 (205)
                      |||+++.+.+..++++
T Consensus         1 Mkk~~~~~~~l~~~l~   16 (340)
T PRK10270          1 MKKVLLIILLLLVVLG   16 (340)
T ss_pred             CCHHHHHHHHHHHHHH
T ss_conf             9028999999999999


No 240
>TIGR02967 guan_deamin guanine deaminase; InterPro: IPR014311   This entry describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as more distantly related homologs which are not included in this entry. .
Probab=21.59  E-value=24  Score=14.38  Aligned_cols=14  Identities=21%  Similarity=0.107  Sum_probs=7.4

Q ss_pred             EE-EEEEEECCCEEE
Q ss_conf             98-975431276778
Q gi|254780598|r  121 RI-RGGYEVSDSLLL  134 (205)
Q Consensus       121 ~~-r~Gy~~~~~~l~  134 (205)
                      |+ |+.|+++|||-|
T Consensus       179 kGnR~~YavTPRFAP  193 (426)
T TIGR02967       179 KGNRLLYAVTPRFAP  193 (426)
T ss_pred             CCCCCCCEECCCCCC
T ss_conf             056367335466776


No 241
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=21.41  E-value=50  Score=12.77  Aligned_cols=28  Identities=36%  Similarity=0.290  Sum_probs=15.5

Q ss_pred             CHHHHHH-HHHHHHHHHHCCCCCCCCCCC
Q ss_conf             9443789-999999998410000246654
Q gi|254780598|r    1 MQKLFLA-VGVSSLALASFCSAQAADPVR   28 (205)
Q Consensus         1 Mkk~~la-~av~~lal~~~~~A~Aad~~~   28 (205)
                      |||++.. .+++...+..+.+..|+++..
T Consensus         1 mKKls~~l~~l~~~~~~~~~~~~aa~~~t   29 (507)
T COG3227           1 MKKLSSVLTGLFLASAGSFPSVAAADLET   29 (507)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCHHHCCCCC
T ss_conf             94178999999998740342323315232


No 242
>TIGR01655 yxeA_fam conserved hypothetical protein; InterPro: IPR006542   These are a family of small (about 115 amino acids) uncharacterised proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members..
Probab=20.93  E-value=51  Score=12.72  Aligned_cols=25  Identities=8%  Similarity=-0.048  Sum_probs=19.1

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9443789999999998410000246
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAAD   25 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad   25 (205)
                      |||.++.+++.++++..++.-+-..
T Consensus         1 MKk~~~~Lla~i~~~~i~~~~~~~~   25 (121)
T TIGR01655         1 MKKVLAGLLALIVVIIIVGLLFFHP   25 (121)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9355688999999999988766403


No 243
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=20.88  E-value=51  Score=12.71  Aligned_cols=22  Identities=45%  Similarity=0.409  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             44378999999999841000024
Q gi|254780598|r    2 QKLFLAVGVSSLALASFCSAQAA   24 (205)
Q Consensus         2 kk~~la~av~~lal~~~~~A~Aa   24 (205)
                      ||++|++.+..++|++ .+|+|.
T Consensus         5 kk~~laav~lpl~lg~-~sa~a~   26 (170)
T PRK12750          5 KKLVLAAVVLPLTLGT-ASAFAF   26 (170)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHCC
T ss_conf             9999999999998421-777506


No 244
>pfam01103 Bac_surface_Ag Surface antigen. This entry includes the following surface antigens; D15 antigen from H.influenzae, OMA87 from P.multocida, OMP85 from N.meningitidis and N.gonorrhoeae. The family also includes a number of eukaryotic proteins that are members of the UPF0140 family. There also appears to be a relationship to pfam03865 (personal obs: C Yeats). In eukaryotes, it appears that these proteins are not surface antigens; S. cerevisiae YNL026W (SAM50) is an essential component of the Sorting and Assembly Machinery (SAM) of the mitochondrial outer membrane. The protein was localized to the mitochondria.
Probab=20.85  E-value=51  Score=12.71  Aligned_cols=70  Identities=21%  Similarity=0.274  Sum_probs=40.5

Q ss_pred             EEEEEEEEEEEEEEECCC-CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCC--EEEEEEEEEEC
Q ss_conf             789885447764443134-55567752047997346610048867999999997505655662--26999998539
Q gi|254780598|r  133 LLYATVGPDVAQKYETGK-AGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFY--NTISLGVGMKF  205 (205)
Q Consensus       133 l~Y~~~G~a~~~~~~~~~-~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~--~~~~~G~~ykF  205 (205)
                      .++.-+|-.+........ .........-+.+|+|+.+  .+|=--+|++|-+ -+.+.+.+.  ..+.++++..|
T Consensus       245 ~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~s~G~Glr~--~tP~gpi~ld~a~-pl~~~~~d~~~~~f~F~iG~~F  317 (317)
T pfam01103       245 ALFVDAGNVWNSGGDTPGGSDGVRSKNIRASVGVGLRW--DSPFGPLRFDYAI-PLKKPDGDRTEFRFYFGIGTEF  317 (317)
T ss_pred             EEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEE--ECCEEEEEEEEEE-CCCCCCCCCCCEEEEEECCCCC
T ss_conf             99998017504567777544435678777999999999--7781879999998-7667778872208999840569


No 245
>PRK11289 ampC beta-lactamase; Provisional
Probab=20.81  E-value=51  Score=12.71  Aligned_cols=27  Identities=30%  Similarity=0.171  Sum_probs=14.0

Q ss_pred             CHHHHHH-HHHHHHHHHHCCCCCCCCCC
Q ss_conf             9443789-99999999841000024665
Q gi|254780598|r    1 MQKLFLA-VGVSSLALASFCSAQAADPV   27 (205)
Q Consensus         1 Mkk~~la-~av~~lal~~~~~A~Aad~~   27 (205)
                      |||.+.. +.++...+++...|+||++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~   31 (387)
T PRK11289          4 MMKSLLAALLLTASISAFAAPAAAATSQ   31 (387)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf             9999999999999998616765569979


No 246
>TIGR02448 TIGR02448 conserverd hypothetical protein; InterPro: IPR012661   This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1, and also in Pseudomonas putida (strain KT2440), four in Pseudomonas syringae DC3000, and single members in several other Proteobacteria. The function is unknown..
Probab=20.72  E-value=48  Score=12.86  Aligned_cols=24  Identities=33%  Similarity=0.263  Sum_probs=11.9

Q ss_pred             CH-HHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             94-437899999999984100002466
Q gi|254780598|r    1 MQ-KLFLAVGVSSLALASFCSAQAADP   26 (205)
Q Consensus         1 Mk-k~~la~av~~lal~~~~~A~Aad~   26 (205)
                      || +..|..++..|.|++.  |.+...
T Consensus         1 MR~r~~Ll~~~lLl~~A~~--a~a~~~   25 (107)
T TIGR02448         1 MRLRKLLLAAALLLSLAAG--AAAASF   25 (107)
T ss_pred             CCHHHHHHHHHHHHHCCHH--HHHHHH
T ss_conf             9424789999998741033--777886


No 247
>COG3652 Predicted outer membrane protein [Function unknown]
Probab=20.68  E-value=51  Score=12.69  Aligned_cols=26  Identities=31%  Similarity=0.308  Sum_probs=18.4

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             94437899999999984100002466
Q gi|254780598|r    1 MQKLFLAVGVSSLALASFCSAQAADP   26 (205)
Q Consensus         1 Mkk~~la~av~~lal~~~~~A~Aad~   26 (205)
                      |-..++...++++++.+...|+++|+
T Consensus         1 mi~~~m~~~aal~llla~p~A~aad~   26 (170)
T COG3652           1 MIRHFMKAAAALALLLALPFAQAADK   26 (170)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             90367777999999997365551489


No 248
>pfam08194 DIM DIM protein. Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila. This family includes DIMs 1 to 4 that have masses below 5 kDa.
Probab=20.68  E-value=51  Score=12.69  Aligned_cols=18  Identities=44%  Similarity=0.344  Sum_probs=11.5

Q ss_pred             CHHHHHHHHHHHHH-HHHC
Q ss_conf             94437899999999-9841
Q gi|254780598|r    1 MQKLFLAVGVSSLA-LASF   18 (205)
Q Consensus         1 Mkk~~la~av~~la-l~~~   18 (205)
                      ||-+.++.++..|+ ++.+
T Consensus         1 MK~lsl~~~l~LLa~La~a   19 (37)
T pfam08194         1 MKFLSLAFALGLLATLAFA   19 (37)
T ss_pred             CHHHHHHHHHHHHHHHHHH
T ss_conf             9089999999999999972


No 249
>PRK09474 malE maltose ABC transporter periplasmic protein; Reviewed
Probab=20.55  E-value=52  Score=12.68  Aligned_cols=16  Identities=19%  Similarity=0.237  Sum_probs=9.5

Q ss_pred             CHHHHHHHHHHHHHHH
Q ss_conf             9443789999999998
Q gi|254780598|r    1 MQKLFLAVGVSSLALA   16 (205)
Q Consensus         1 Mkk~~la~av~~lal~   16 (205)
                      |||.+-.++++.++..
T Consensus         1 ~~~~~~~~~~~~~~~~   16 (394)
T PRK09474          1 IKKGLRILALSALTTL   16 (394)
T ss_pred             CCHHHHHHHHHHHHHH
T ss_conf             9415889999999999


No 250
>PRK09840 catecholate siderophore receptor Fiu; Provisional
Probab=20.44  E-value=52  Score=12.66  Aligned_cols=16  Identities=13%  Similarity=0.202  Sum_probs=7.8

Q ss_pred             CCCCCEEEEEEEEEEE
Q ss_conf             0488679999999975
Q gi|254780598|r  171 GLSESLVARLEYRASK  186 (205)
Q Consensus       171 ~it~~~~~r~EY~y~d  186 (205)
                      .++++|.+.+-|.|.|
T Consensus       623 ~~~~~~~l~~~yty~d  638 (760)
T PRK09840        623 NITPAWQVIAGYTQQK  638 (760)
T ss_pred             EECCCEEEEEEEEEEE
T ss_conf             0069879999999997


Done!