HHsearch alignment for GI: 254780598 and conserved domain: pfam01389
>pfam01389 OmpA_membrane OmpA-like transmembrane domain. The structure of OmpA transmembrane domain shows that it consists of an eight stranded beta barrel. This family includes some other distantly related outer membrane proteins with low scores.
Probab=99.96 E-value=2.2e-28 Score=163.63 Aligned_cols=148 Identities=20% Similarity=0.280 Sum_probs=112.4
Q ss_pred CCCCCCCCCCCCCC--------CCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCC---CCCCCCCEEEEEEE
Q ss_conf 21000122333344--------66777776026899854640483799845101321555666---62122321489998
Q gi|254780598|r 54 NGPYAGLSALYNGS--------FGEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLAD---NIHSLHGIGGSLRI 122 (205)
Q Consensus 54 ~G~y~g~~~g~~~~--------~~~~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~---~~~~~~~~~~~~~~ 122 (205)
T Consensus 5 n~~Y~G~~~G~s~~~~~~~~~~~~~~d~~~~~~glf~GYqfn~---~~a~E~gY~~lG~~~~~~~~~~~~~~~~~~~l~~ 81 (175)
T pfam01389 5 NTWYTGAKAGWASFHDTGLIEGNGPTHRNSLTAGAFGGYQINN---YLAAELGYDYLGRMPYKGKGKNNAHKAQGVTLSL 81 (175)
T ss_pred CCEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCC---EEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEE
T ss_conf 9578966402568957634457876567871789998631031---1226874243165433553434540468999999
Q ss_pred EEEEEECCCEEEEEEEEEEEEEEEECCC-----CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEE-CCC-----CC
Q ss_conf 9754312767789885447764443134-----555677520479973466100488679999999975-056-----55
Q gi|254780598|r 123 RGGYEVSDSLLLYATVGPDVAQKYETGK-----AGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASK-YSK-----VE 191 (205)
Q Consensus 123 r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~-----~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~d-f~~-----~~ 191 (205)
T Consensus 82 k~~~pl~d~~~ly~K~G~a~~~~d~~~~~~~~~~~~~~d~~~~~~~G~G~eY-~it~~~~~r~eYq~~~~~g~~~~~~~~ 160 (175)
T pfam01389 82 KLSYPLTDDLDVYGKVGGALVRADYKFYEDANGKTGNHDTGVSPLFALGVEY-AVTPELAVRLEYQYLNNIGDLHKQGKR 160 (175)
T ss_pred EEEEEECCCEEEEEEEEEEEEECCCCEECCCCCCCCCCCCCCCEEEEEEEEE-EECCCCEEEEEEEEEHHCCCCCCCCCC
T ss_conf 9888614856799971068996133210256664223567705388888899-807582788889992225853356766
Q ss_pred CCCEEEEEEEEEEC
Q ss_conf 66226999998539
Q gi|254780598|r 192 GFYNTISLGVGMKF 205 (205)
Q Consensus 192 ~~~~~~~~G~~ykF 205 (205)
T Consensus 161 ~D~~~~slGlsYrF 174 (175)
T pfam01389 161 PDNGSASLGISYRF 174 (175)
T ss_pred CCCCEEEEEEEEEC
T ss_conf 77777999999777