HHsearch alignment for GI: 254780598 and conserved domain: pfam01617
>pfam01617 Surface_Ag_2 Surface antigen. This family includes a number of bacterial surface antigens expressed on the surface of pathogens.
Probab=91.27 E-value=0.77 Score=22.07 Aligned_cols=174 Identities=13% Similarity=0.023 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------CCC----
Q ss_conf 44378999999999841000024665435666665556345544444411542100012233-----------334----
Q gi|254780598|r 2 QKLFLAVGVSSLALASFCSAQAADPVRRAHHGGRGVVPTIATNRYVPIRHDFNGPYAGLSAL-----------YNG---- 66 (205)
Q Consensus 2 kk~~la~av~~lal~~~~~A~Aad~~~~~~~~~~~~~~~~~~~~~~~~~~~w~G~y~g~~~g-----------~~~---- 66 (205)
T Consensus 4 kk~fi~~~l~~l~~~lp~~sfs~~~~~~~~----~~~~fYis~qYkPs~~~f~~FsikE~~~~t~~~~~l~~d~~~~~~~ 79 (279)
T pfam01617 4 KKFFIGAALATLLSFLPGSSFSDPVGPISD----GEGSFYIGLKYNPSISHFGTFSAKETGGTTKGVFGLKKDWDGVVIS 79 (279)
T ss_pred CEEEHHHHHHHHHHHCCCHHHCCCCCCCCC----CCCEEEEEEEECCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCC
T ss_conf 034299999999987763454063456767----7730999898876766656178973588740048722456543002
Q ss_pred -------CC---CCC-CCCC-CEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCC--------------------
Q ss_conf -------46---677-7776-026899854640483799845101321555666621223--------------------
Q gi|254780598|r 67 -------SF---GEE-AHHN-AGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLH-------------------- 114 (205)
Q Consensus 67 -------~~---~~~-~~~~-~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~~~~~-------------------- 114 (205)
T Consensus 80 ~~~~~~~~~~~y~~~f~~n~~~gfsGaiGYs~~--~~RiE~E~sye~Fdvk~~~~~~~~da~~y~al~r~~~~~~~~~~y 157 (279)
T pfam01617 80 KHANFDFSVPGYSFKYENNLFTGFGGAIGYSMD--GPRVELEVSYERFDVKNQGNNYKNDAHKYAALTRDAAIAAADSKY 157 (279)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC--CEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCE
T ss_conf 445677777899855056884206899968149--988999987658335899876146615899986002666667746
Q ss_pred -------CEEEEEEEEEEEEEC---CCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEE
Q ss_conf -------214899989754312---7677898854477644431345556775204799734661004886799999999
Q gi|254780598|r 115 -------GIGGSLRIRGGYEVS---DSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRA 184 (205)
Q Consensus 115 -------~~~~~~~~r~Gy~~~---~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y 184 (205)
T Consensus 158 ~v~kN~gis~~S~m~N~CYD~~~~~~~i~PY~C~GiG~d~i~~----~~~~~~K~aYq~KlGvsY-~ls~~i~lF~~gyY 232 (279)
T pfam01617 158 VVLKNDGLTDISLMLNACYDIAHEGIPVSPYVCAGVGADLISV----FGAINPKFSYQGKAGLSY-PITPEISLFAGGHY 232 (279)
T ss_pred EEEEECCEEEEEEEEEEEEECCCCCCCCCCEEEEECCHHHHHH----CCCCCEEEEEEEEEEEEE-ECCCCEEEEEEEEE
T ss_conf 9999677886657999999622388620447877437746323----267533589999523788-73888599998899
Q ss_pred EE
Q ss_conf 75
Q gi|254780598|r 185 SK 186 (205)
Q Consensus 185 ~d 186 (205)
T Consensus 233 Hk 234 (279)
T pfam01617 233 HK 234 (279)
T ss_pred EE
T ss_conf 87