HHsearch alignment for GI: 254780598 and conserved domain: pfam03797
>pfam03797 Autotransporter Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C terminus of the proteins it occurs in. The N terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.
Probab=97.86 E-value=0.0011 Score=36.68 Aligned_cols=130 Identities=23% Similarity=0.243 Sum_probs=73.9
Q ss_pred CCCCCCCCCCCCCCCCC--------------CCCCCCEEEEEEEEEEEC-CCEEEEEEEEEEECCCCCCCC---------
Q ss_conf 21000122333344667--------------777760268998546404-837998451013215556666---------
Q gi|254780598|r 54 NGPYAGLSALYNGSFGE--------------EAHHNAGGSIFAGYNVED-SCIMYGVEGDVRYTVPVLADN--------- 109 (205)
Q Consensus 54 ~G~y~g~~~g~~~~~~~--------------~~~~~~~~G~~~GYn~q~-~~~V~G~e~d~~~~~~~~~~~--------- 109 (205)
T Consensus 85 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~i~P~~~l~y~~~~~~~f~E~g~~~~~ 164 (265)
T pfam03797 85 GGLYLDGVLAYGRFDNDVKRLGTSTGTAKGDYDSHGLGASLEAGYRFKLSGNLTLTPFAGLQYVYLRQDGFTESGARSFA 164 (265)
T ss_pred CCCEEEEEEEEEEEECEEEEECCCCCCCEEEEEEEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCCEEEECCCCCC
T ss_conf 98369767888997150487306787302228024999999987623326975996999999999876876670998435
Q ss_pred CCC----CCCEEEEEEEEEEEEECC-CEEEEEEEEEEEEEEEECC---------------CCCCCCCCCEEEEEEEEEEE
Q ss_conf 212----232148999897543127-6778988544776444313---------------45556775204799734661
Q gi|254780598|r 110 IHS----LHGIGGSLRIRGGYEVSD-SLLLYATVGPDVAQKYETG---------------KAGEITPIAIGGTAGVGVEV 169 (205)
Q Consensus 110 ~~~----~~~~~~~~~~r~Gy~~~~-~~l~Y~~~G~a~~~~~~~~---------------~~~~~~~~~~g~~~G~Gvey 169 (205)
T Consensus 165 l~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 244 (265)
T pfam03797 165 LSVDSQSLTNLSGPLGLRLEYRFSLRSLKPYATLGWAYEFDDYRQVPTNGATLLASGGSWVTSGTPLARNAAELGAGVEL 244 (265)
T ss_pred EEEECCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEEEECCCCCCCEEEEEEEECCCCCEEECCCCCCCEEEEEEEEEEE
T ss_conf 17844666589999999999985287364899999999977887550399997268984299675666549999988999
Q ss_pred ECCCCCEEEEEEEEE
Q ss_conf 004886799999999
Q gi|254780598|r 170 GGLSESLVARLEYRA 184 (205)
Q Consensus 170 ~~it~~~~~r~EY~y 184 (205)
T Consensus 245 -~~~~~~~l~~~~~~ 258 (265)
T pfam03797 245 -ALGKNLSLFLNYSG 258 (265)
T ss_pred -EECCCEEEEEEEEE
T ss_conf -98998699999970