HHsearch alignment for GI: 254780598 and conserved domain: pfam03797

>pfam03797 Autotransporter Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C terminus of the proteins it occurs in. The N terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.
Probab=97.86  E-value=0.0011  Score=36.68  Aligned_cols=130  Identities=23%  Similarity=0.243  Sum_probs=73.9

Q ss_pred             CCCCCCCCCCCCCCCCC--------------CCCCCCEEEEEEEEEEEC-CCEEEEEEEEEEECCCCCCCC---------
Q ss_conf             21000122333344667--------------777760268998546404-837998451013215556666---------
Q gi|254780598|r   54 NGPYAGLSALYNGSFGE--------------EAHHNAGGSIFAGYNVED-SCIMYGVEGDVRYTVPVLADN---------  109 (205)
Q Consensus        54 ~G~y~g~~~g~~~~~~~--------------~~~~~~~~G~~~GYn~q~-~~~V~G~e~d~~~~~~~~~~~---------  109 (205)
T Consensus        85 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~i~P~~~l~y~~~~~~~f~E~g~~~~~  164 (265)
T pfam03797        85 GGLYLDGVLAYGRFDNDVKRLGTSTGTAKGDYDSHGLGASLEAGYRFKLSGNLTLTPFAGLQYVYLRQDGFTESGARSFA  164 (265)
T ss_pred             CCCEEEEEEEEEEEECEEEEECCCCCCCEEEEEEEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCCEEEECCCCCC
T ss_conf             98369767888997150487306787302228024999999987623326975996999999999876876670998435


Q ss_pred             CCC----CCCEEEEEEEEEEEEECC-CEEEEEEEEEEEEEEEECC---------------CCCCCCCCCEEEEEEEEEEE
Q ss_conf             212----232148999897543127-6778988544776444313---------------45556775204799734661
Q gi|254780598|r  110 IHS----LHGIGGSLRIRGGYEVSD-SLLLYATVGPDVAQKYETG---------------KAGEITPIAIGGTAGVGVEV  169 (205)
Q Consensus       110 ~~~----~~~~~~~~~~r~Gy~~~~-~~l~Y~~~G~a~~~~~~~~---------------~~~~~~~~~~g~~~G~Gvey  169 (205)
T Consensus       165 l~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  244 (265)
T pfam03797       165 LSVDSQSLTNLSGPLGLRLEYRFSLRSLKPYATLGWAYEFDDYRQVPTNGATLLASGGSWVTSGTPLARNAAELGAGVEL  244 (265)
T ss_pred             EEEECCCCCEEEEEEEEEEEEEECCCEEEEEEEEEEEEECCCCCCCEEEEEEEECCCCCEEECCCCCCCEEEEEEEEEEE
T ss_conf             17844666589999999999985287364899999999977887550399997268984299675666549999988999


Q ss_pred             ECCCCCEEEEEEEEE
Q ss_conf             004886799999999
Q gi|254780598|r  170 GGLSESLVARLEYRA  184 (205)
Q Consensus       170 ~~it~~~~~r~EY~y  184 (205)
T Consensus       245 -~~~~~~~l~~~~~~  258 (265)
T pfam03797       245 -ALGKNLSLFLNYSG  258 (265)
T ss_pred             -EECCCEEEEEEEEE
T ss_conf             -98998699999970