HHsearch alignment for GI: 254780598 and conserved domain: pfam06178
>pfam06178 KdgM Oligogalacturonate-specific porin protein (KdgM). This family consists of several bacterial proteins which are homologous to the oligogalacturonate-specific porin protein KdgM from Erwinia chrysanthemi. The phytopathogenic Gram-negative bacteria Erwinia chrysanthemi secretes pectinases, which are able to degrade the pectic polymers of plant cell walls, and uses the degradation products as a carbon source for growth. KdgM is a major outer membrane protein, whose synthesis is strongly induced in the presence of pectic derivatives. KdgM behaves like a voltage-dependent porin that is slightly selective for anions and that exhibits fast block in the presence of trigalacturonate. In contrast to most porins, KdgM seems to be monomeric.
Probab=94.36 E-value=0.26 Score=24.52 Aligned_cols=51 Identities=10% Similarity=0.062 Sum_probs=36.6
Q ss_pred CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC-CCCCCEEEEEEEEEEC
Q ss_conf 677520479973466100488679999999975056-5566226999998539
Q gi|254780598|r 154 ITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSK-VEGFYNTISLGVGMKF 205 (205)
Q Consensus 154 ~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~-~~~~~~~~~~G~~ykF 205 (205)
T Consensus 167 ~d~k~~~~e~n~~~~Y-k~~~~W~PyvEvg~v~~~~~~d~rq~RyRVGv~Y~F 218 (218)
T pfam06178 167 SDGKKTNWEYNVKLAY-KIDKHWTPYVEVGNVDVNNNTDERQTRYRVGVQYSF 218 (218)
T ss_pred CCCCCCEEEEEEEEEE-ECCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEEEC
T ss_conf 4798851688899999-828982304999842567888662767998889769