Query gi|254780598|ref|YP_003065011.1| outer membrane protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 205
No_of_seqs 139 out of 814
Neff 7.4
Searched_HMMs 23785
Date Tue May 31 18:39:37 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780598.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1orm_A Outer membrane protein 99.9 3.9E-29 1.7E-33 166.3 -5.3 141 61-205 6-148 (148)
2 1p4t_A Outer membrane protein 99.9 1.3E-23 5.6E-28 137.9 15.2 147 53-205 3-155 (155)
3 2k0l_A Outer membrane protein 99.9 1.6E-21 6.5E-26 127.3 17.9 149 53-205 16-192 (216)
4 1qjp_A Outer membrane protein 99.9 1.8E-21 7.5E-26 127.0 17.4 147 55-205 6-170 (171)
5 2jmm_A Outer membrane protein 99.8 8.1E-19 3.4E-23 113.3 14.4 141 54-205 5-150 (156)
6 2f1v_A Outer membrane protein 99.8 1.3E-18 5.4E-23 112.3 14.6 129 72-205 33-191 (197)
7 2x55_A Coagulase/fibrinolysin; 99.1 9.3E-09 3.9E-13 61.6 15.1 128 74-205 124-292 (293)
8 1uyn_X NALP; autotransporter, 98.9 1.2E-07 5.1E-12 55.9 14.4 128 75-205 154-308 (308)
9 3kvn_X Esterase ESTA; beta bar 98.8 4.7E-07 2E-11 52.9 14.7 126 77-205 477-632 (632)
10 2qom_A Serine protease ESPP; o 98.6 1.7E-06 7.3E-11 50.0 14.2 148 55-205 93-277 (285)
11 3aeh_A Hemoglobin-binding prot 98.6 7.1E-06 3E-10 46.8 15.9 129 75-205 154-306 (308)
12 2j1n_A Outer membrane protein 98.2 0.00014 6E-09 40.1 16.6 80 121-205 260-346 (346)
13 3dwo_X Probable outer membrane 98.2 0.00017 7.3E-09 39.7 16.0 84 121-205 289-389 (451)
14 3dwn_A Long-chain fatty acid t 98.1 0.00022 9.4E-09 39.1 14.0 49 156-205 320-377 (427)
15 1pho_A Phosphoporin; outer mem 97.9 0.00049 2.1E-08 37.4 19.5 45 160-205 282-330 (330)
16 2fgq_X OMP32, outer membrane p 97.8 0.00089 3.8E-08 36.0 14.8 45 160-205 271-332 (332)
17 2zfg_A Outer membrane protein 97.8 0.00094 4E-08 35.9 16.6 77 123-205 260-340 (340)
18 2por_A Porin; HET: C8E; 1.80A 97.8 0.00098 4.1E-08 35.8 16.2 41 161-205 261-301 (301)
19 3dwn_A Long-chain fatty acid t 97.6 0.0015 6.3E-08 34.9 16.5 85 118-205 325-421 (427)
20 3bry_A TBUX; beta barrel, oute 97.6 0.0011 4.5E-08 35.6 11.0 85 120-205 281-388 (441)
21 3bs0_A TODX; beta barrel, oute 97.6 0.0021 8.6E-08 34.2 16.4 49 156-205 329-386 (439)
22 3dwo_X Probable outer membrane 97.5 0.0027 1.1E-07 33.6 16.2 84 119-205 338-443 (451)
23 1i78_A Protease VII; integral 97.3 0.004 1.7E-07 32.7 14.9 48 157-205 227-297 (297)
24 2f1c_X OMPG, outer membrane pr 97.0 0.0089 3.7E-07 30.9 14.4 84 120-205 191-280 (286)
25 3a2s_X Outer membrane protein 97.0 0.01 4.2E-07 30.6 17.0 44 161-205 310-355 (355)
26 3prn_A Porin; integral membran 96.8 0.013 5.5E-07 30.1 13.2 38 162-205 252-289 (289)
27 3aeh_A Hemoglobin-binding prot 96.7 0.015 6.5E-07 29.7 15.3 32 74-105 63-98 (308)
28 3bs0_A TODX; beta barrel, oute 96.2 0.036 1.5E-06 27.8 16.1 83 120-205 336-433 (439)
29 1uyn_X NALP; autotransporter, 95.7 0.062 2.6E-06 26.6 15.5 71 116-188 153-237 (308)
30 2fgq_X OMP32, outer membrane p 95.6 0.065 2.7E-06 26.5 15.8 137 52-205 144-282 (332)
31 2qom_A Serine protease ESPP; o 95.6 0.069 2.9E-06 26.3 15.6 111 74-185 78-209 (285)
32 2wjr_A Probable N-acetylneuram 95.6 0.069 2.9E-06 26.3 17.5 53 152-205 157-214 (214)
33 1qjp_A Outer membrane protein 94.8 0.12 5E-06 25.1 14.7 87 88-177 4-92 (171)
34 1i78_A Protease VII; integral 94.7 0.13 5.3E-06 25.0 12.8 27 159-187 177-203 (297)
35 2o4v_A Porin P; outer membrane 94.2 0.17 7.2E-06 24.3 18.1 45 160-205 362-411 (411)
36 3jty_A BENF-like porin; PFL_13 89.8 0.64 2.7E-05 21.4 15.1 46 159-205 342-391 (402)
37 2a3m_A COG3005: nitrate/TMAO r 84.7 0.21 8.8E-06 23.9 0.8 25 1-25 1-25 (130)
38 2p3y_A Hypothetical protein VP 77.0 0.4 1.7E-05 22.4 0.0 25 1-27 1-25 (491)
39 2erv_A Hypothetical protein PA 71.8 3.5 0.00015 17.6 18.0 124 72-200 11-145 (150)
40 2w9x_A AXE2A, CJCE2B, putative 64.5 1.5 6.4E-05 19.4 0.7 62 1-63 1-62 (366)
41 2zzs_A Cytochrome C554; C-type 63.6 1.1 4.8E-05 20.1 -0.1 25 1-27 1-25 (103)
42 1y0g_A Protein YCEI; lipid bin 62.6 1.3 5.5E-05 19.8 0.1 24 1-25 1-24 (191)
43 2odj_A Porin D; outer membrane 51.2 8.9 0.00037 15.5 14.5 47 158-205 365-417 (428)
44 1af6_A Maltoporin, LAMB; membr 48.3 10 0.00042 15.2 13.8 68 117-187 305-372 (421)
45 2f2f_C CDT C, cytolethal diste 44.8 5.4 0.00023 16.6 0.8 27 1-27 1-27 (186)
46 2vdf_A OPCA, outer membrane pr 44.4 12 0.00048 14.9 15.9 127 78-205 90-253 (253)
47 2qtk_A Probable porin; outer m 41.9 13 0.00053 14.7 13.9 43 161-205 342-388 (390)
48 2qn4_A RASI, alpha-amylase/sub 36.7 8 0.00034 15.7 0.7 30 1-30 1-30 (200)
49 1xt8_A Putative amino-acid tra 35.6 6.8 0.00029 16.1 0.2 17 1-17 1-17 (292)
50 2guf_A Vitamin B12 transporter 33.2 18 0.00075 14.0 16.6 43 162-205 546-594 (594)
51 2qzu_A Putative sulfatase YIDJ 32.1 10 0.00044 15.1 0.6 25 1-25 1-25 (491)
52 1c2n_A Cytochrome C2; electron 31.3 7.9 0.00033 15.8 -0.1 25 1-27 1-25 (137)
53 1jb0_F Photosystem 1 reaction 27.3 11 0.00046 15.0 0.1 23 1-23 1-23 (164)
54 1a0s_P Sucrose-specific porin; 26.5 24 0.00099 13.3 19.1 123 76-202 265-408 (413)
55 2jrn_A CHAP domain protein; mo 26.1 11 0.00046 15.0 -0.1 11 1-11 1-11 (163)
56 2v25_A Major cell-binding fact 25.2 12 0.00051 14.8 0.0 25 1-25 3-28 (259)
57 2jna_A Putative secreted prote 24.6 0.78 3.3E-05 20.9 -6.2 28 1-30 1-28 (104)
58 3c75_A Amicyanin; copper prote 23.9 19 0.00082 13.8 0.8 26 2-27 5-30 (132)
59 3c9h_A ABC transporter, substr 23.4 14 0.00059 14.5 0.0 20 1-24 1-20 (355)
60 2ecf_A Dipeptidyl peptidase IV 23.3 17 0.0007 14.1 0.4 24 1-27 1-24 (741)
No 1
>1orm_A Outer membrane protein X; OMPX, trosy, DHPC, detergents, lipids, micelles; NMR {Escherichia coli} SCOP: f.4.1.1 PDB: 1q9f_A 1q9g_A 1qj8_A* 1qj9_A
Probab=99.93 E-value=3.9e-29 Score=166.34 Aligned_cols=141 Identities=21% Similarity=0.232 Sum_probs=110.7
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCC-CCCEEEEEEEEEEEEECCCEEEEEEEE
Q ss_conf 2333344667777760268998546404837998451013215556666212-232148999897543127677898854
Q gi|254780598|r 61 SALYNGSFGEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHS-LHGIGGSLRIRGGYEVSDSLLLYATVG 139 (205)
Q Consensus 61 ~~g~~~~~~~~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~~~-~~~~~~~~~~r~Gy~~~~~~l~Y~~~G 139 (205)
..||+..+.+.. ++...|+++||+||+++.++|+|+++.+.+......... ......++.++..|+++|++++|+++|
T Consensus 6 ~~Gy~~~d~~~~-~~~~~G~~~gy~y~~~~~~~GvE~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Y~~~G 84 (148)
T 1orm_A 6 TGGYAQSDAQGQ-MNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVG 84 (148)
T ss_dssp CCCCCCCCCTTT-CCCCCCCCCCBCCCSSSCSCCCCBCCCCCCCCCCSSSCCSCCSCCCBCCBCCCCCCTTTCCCCCCEE
T ss_pred EEEEEEECCCCC-CCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEECCCEEEEEEEE
T ss_conf 803898515677-7764348999718858935999999991247651046742555599998888998278575999988
Q ss_pred EEEEEEEECCCC-CCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf 477644431345-556775204799734661004886799999999750565566226999998539
Q gi|254780598|r 140 PDVAQKYETGKA-GEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205)
Q Consensus 140 ~a~~~~~~~~~~-~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205)
+++.+.+.+... ...+++..+|.+|+|+|| +|++||++|+||+|+++++.+ .|++++||+|||
T Consensus 85 ~a~~~~~~~~~~~~~~s~~~~~~~~G~Gvey-~lt~n~~~~~eY~~~~~~~~d--~~~~~vGv~Y~F 148 (148)
T 1orm_A 85 VGYGKFQTTEYPTYKNDTSDYGFSYGAGLQF-NPMENVALDFSYEQSRIRSVD--VGTWIAGVGYRF 148 (148)
T ss_dssp CBCCSCSCCSSSSCCCCCCCCCCEECCCCCC-CCSSSCBCCCCCCCCCSSSCC--CCCCCCCCBCCC
T ss_pred EEEEEEEECCCCCCCCCCCCCCEEEECEEEE-EECCCEEEEEEEEEEECCCCC--EEEEEEEEEEEC
T ss_conf 6478877312554311355211558130899-865887999999997079961--216999989989
No 2
>1p4t_A Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A {Neisseria meningitidis} SCOP: f.4.1.1
Probab=99.91 E-value=1.3e-23 Score=137.92 Aligned_cols=147 Identities=16% Similarity=0.097 Sum_probs=112.2
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCC
Q ss_conf 421000122333344667-7777602689985464048379984510132155566662122321489998975431276
Q gi|254780598|r 53 FNGPYAGLSALYNGSFGE-EAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDS 131 (205)
Q Consensus 53 w~G~y~g~~~g~~~~~~~-~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~ 131 (205)
-+|||++.++++.....+ .+.+++.+++.+||+++ +| .+|+++.+...........+ .+...+.++..++..++
T Consensus 3 ~~Gfyv~~~~g~~~~~~~~~~~~g~~~~~~~GY~f~--~~--~~e~~y~~~~~~~~~~~~~~-~~~~~l~~~y~~~~~~~ 77 (155)
T 1p4t_A 3 ASGFYVQADAAHAKASSSLGSAKGFSPRISAGYRIN--DL--RFAVDYTRYKNYKAPSTDFK-LYSIGASAIYDFDTQSP 77 (155)
T ss_dssp CEEEEEEEEEEEEEEECSSCEEEEECCEEEEEEEET--TE--EEEEEEEEEEESSCCSSCCE-EEEEEEEEEEECCCSSS
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCEEEEEEEEEECC--CE--EEEEEEEEECCCCCCCCCEE-EEEEEEEEEEEECCCCC
T ss_conf 743389687547024467787885768999999827--99--99999998245567886357-89999999998436775
Q ss_pred EEEEEEEEEEEEEEEECCC-CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC----CCCEEEEEEEEEEC
Q ss_conf 7789885447764443134-55567752047997346610048867999999997505655----66226999998539
Q gi|254780598|r 132 LLLYATVGPDVAQKYETGK-AGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVE----GFYNTISLGVGMKF 205 (205)
Q Consensus 132 ~l~Y~~~G~a~~~~~~~~~-~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~----~~~~~~~~G~~ykF 205 (205)
+.||+++|+++++.+.... ....+++..+|.+|+|++| .|+|+|++++||||+++++++ .+.|++++|+.|||
T Consensus 78 ~~py~~~G~g~~~~~~~~~~~~~~~~~~~~~~~g~G~~y-~~~~~~~~~~ey~y~~~~~~~~~~~~~~~~~~~Gl~Y~F 155 (155)
T 1p4t_A 78 VKPYLGARLSLNRASVDLGGSDSFSQTSIGLGVLTGVSY-AVTPNVDLDAGYRYNYIGKVNTVKNVRSGELSAGVRVKF 155 (155)
T ss_dssp EEEEEEEEEEEEEEEEEETTEEEECCCEEEEEEEEEEEE-EEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEC
T ss_pred EEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEEE-EECCCEEEEEEEEEEECCCCCCCCCEEEEEEEEEEEEEC
T ss_conf 779999657899987143330014785060475114999-717899999999998767876674300369999999999
No 3
>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles; NMR {Klebsiella pneumoniae}
Probab=99.89 E-value=1.6e-21 Score=127.29 Aligned_cols=149 Identities=23% Similarity=0.309 Sum_probs=111.0
Q ss_pred CCCCCCCCCCCCCCCC-------------CCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCC---CCCCCCE
Q ss_conf 4210001223333446-------------67777760268998546404837998451013215556666---2122321
Q gi|254780598|r 53 FNGPYAGLSALYNGSF-------------GEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADN---IHSLHGI 116 (205)
Q Consensus 53 w~G~y~g~~~g~~~~~-------------~~~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~---~~~~~~~ 116 (205)
...+|+|+++|++... ...+++++.+++.+||+|+.. +++|+.+.+.+...... .......
T Consensus 16 ~~~fYiG~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~GY~f~~~---~~~E~~y~~~~~~~~~~~~~~~~~~~~ 92 (216)
T 2k0l_A 16 DNTWYAGGKLGWSQYHDTGFYGNGFQNNNGPTRNDQLGAGAFGGYQVNPY---LGFEMGYDWLGRMAYKGSVDNGAFKAQ 92 (216)
T ss_dssp CCCEEEEEEEECSCCCCSCCCCCSCCCSCCCSCCCCCEEEEEEEEEEETT---EEEEEEEEECCCCCCCCSSCCCSSCCC
T ss_pred CCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCC---CEEEEEEEECCCEEEECCCCCCCEEEE
T ss_conf 79899999971088606654356654555531378668999999894134---107971576484012036776515877
Q ss_pred EEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCC------CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECC--
Q ss_conf 4899989754312767789885447764443134------55567752047997346610048867999999997505--
Q gi|254780598|r 117 GGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGK------AGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYS-- 188 (205)
Q Consensus 117 ~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~------~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~-- 188 (205)
...+.++..|.+.+++.+|+++|+.+...+.+.. ..+.+++..+|.+|+|+|| +|+|+|++|+||||.+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~y-~l~~~~s~~~ey~y~~~~~~ 171 (216)
T 2k0l_A 93 GVQLTAKLGYPITDDLDIYTRLGGMVWRADSKGNYASTGVSRSEHDTGVSPVFAGGVEW-AVTRDIATRLEYQWVNNIGD 171 (216)
T ss_dssp EEEEEEEEEEESSSSEEEEEEEEEEEEECCCCCSCCCSSSCCCCCCEEEEEEEEEEEEE-ECSSSCEEEEEESSCSSCCC
T ss_pred EEEEEEEEEEEEECCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCEEEE-EECCCEEEEEEEEEEECCCC
T ss_conf 78999999885102302541000367751011000356644322356413104222799-70799799999999964687
Q ss_pred ----CCCCCCEEEEEEEEEEC
Q ss_conf ----65566226999998539
Q gi|254780598|r 189 ----KVEGFYNTISLGVGMKF 205 (205)
Q Consensus 189 ----~~~~~~~~~~~G~~ykF 205 (205)
..+.+.+++++||+|||
T Consensus 172 ~~~~~~~~d~~~~~~Gv~Y~F 192 (216)
T 2k0l_A 172 AGTVGTRPDNGMLSLGVSYRF 192 (216)
T ss_dssp CSCCCCSSCSCCCEEEEEEEC
T ss_pred CCCCCCCCCCCEEEEEEEEEC
T ss_conf 655452222678999999999
No 4
>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} SCOP: f.4.1.1 PDB: 1bxw_A* 1g90_A 2ge4_A
Probab=99.89 E-value=1.8e-21 Score=126.99 Aligned_cols=147 Identities=22% Similarity=0.310 Sum_probs=110.3
Q ss_pred CCCCCCCCCCCCC--------CCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCC---CCCCCEEEEEEEE
Q ss_conf 1000122333344--------6677777602689985464048379984510132155566662---1223214899989
Q gi|254780598|r 55 GPYAGLSALYNGS--------FGEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNI---HSLHGIGGSLRIR 123 (205)
Q Consensus 55 G~y~g~~~g~~~~--------~~~~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~---~~~~~~~~~~~~r 123 (205)
.+|+|+.+|+... ......+++.+++.+||+|+.. +++|+.+.+.+....... .........+.++
T Consensus 6 ~wYvG~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~GY~f~~~---~~~E~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (171)
T 1qjp_A 6 TWYTGAKLGWSQYHDTGFINNNGPTHENKLGAGAFGGYQVNPY---VGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAK 82 (171)
T ss_dssp EEEEEEEEEEEC-------------CCCEEEEEEEEEEEEETT---EEEEEEEEEEEECCC-------CEEEEEEEEEEE
T ss_pred CEEEEEEECCEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCC---EEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEE
T ss_conf 7999998601995265444777644578726899998863630---9999999865863110445444068888889778
Q ss_pred EEEEECCCEEEEEEEEEEEEEEEECCCC-CCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC------CCCCCEE
Q ss_conf 7543127677898854477644431345-55677520479973466100488679999999975056------5566226
Q gi|254780598|r 124 GGYEVSDSLLLYATVGPDVAQKYETGKA-GEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSK------VEGFYNT 196 (205)
Q Consensus 124 ~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~-~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~------~~~~~~~ 196 (205)
..|++++++.+|+++|++..+.+..... ..++++..++.+|+|+|| .|+++|++|+||||..... .+.+.|.
T Consensus 83 ~~~~~~~~~~~y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y-~~~~~~~l~~~y~y~~~~~~~~~~~~~~~~~~ 161 (171)
T 1qjp_A 83 LGYPITDDLDIYTRLGGMVWRADTYSNVYGKNHDTGVSPVFAGGVEY-AITPEIATRLEYQWTNNIGDAHTIGTRPDNGM 161 (171)
T ss_dssp EEEESSSSEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEE-EEETTEEEEEEEEEEC--------------CE
T ss_pred EEEECCCCEEEEEECCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEE-EECCCEEEEEEEEEEECCCCCCCCCCCCCCCE
T ss_conf 99942786149895023899747511036630567434589816999-92699899999999971587655442100458
Q ss_pred EEEEEEEEC
Q ss_conf 999998539
Q gi|254780598|r 197 ISLGVGMKF 205 (205)
Q Consensus 197 ~~~G~~ykF 205 (205)
+++|+.|||
T Consensus 162 ~~lG~~y~F 170 (171)
T 1qjp_A 162 LSLGVSYRF 170 (171)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEEC
T ss_conf 999999988
No 5
>2jmm_A Outer membrane protein A; NMR {Escherichia coli}
Probab=99.81 E-value=8.1e-19 Score=113.33 Aligned_cols=141 Identities=18% Similarity=0.236 Sum_probs=102.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCEE
Q ss_conf 21000122333344667777760268998546404837998451013215556666212232148999897543127677
Q gi|254780598|r 54 NGPYAGLSALYNGSFGEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDSLL 133 (205)
Q Consensus 54 ~G~y~g~~~g~~~~~~~~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~~l 133 (205)
..+|+|+++|++..+ +++..++|+++||+++.. +++|+.+.+.+.... ........+.++.-+...+++.
T Consensus 5 ~~~YvG~~~G~~~~~---~d~~~~~g~~~GY~fn~~---~~~E~~Y~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~ 74 (156)
T 2jmm_A 5 NTWYTGAKLGWSQYS---RENQLGAGAFGGYQVNPY---VGFEMGYDWLGRMPR----KAQGVQLTAKLGYPKLGTDDLD 74 (156)
T ss_dssp SEEEEEEEEEEETTC---CSSCCEEEEEEEEECSSS---EEEEEEEEEECSSSS----CEEEEEEEEEEEECTTCTTTCE
T ss_pred CCEEEEEECCCCCCC---CCCCCEEEEEEEEEECCC---EEEEEEEEECCCCCC----CCCCCEEEEEEEEEECCCCCEE
T ss_conf 979895863641214---788743369998886624---006873660046651----0024158899998762367533
Q ss_pred EEEEEEEEEEEEEECCCC----CCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEE-ECCCCCCCCEEEEEEEEEEC
Q ss_conf 898854477644431345----5567752047997346610048867999999997-50565566226999998539
Q gi|254780598|r 134 LYATVGPDVAQKYETGKA----GEITPIAIGGTAGVGVEVGGLSESLVARLEYRAS-KYSKVEGFYNTISLGVGMKF 205 (205)
Q Consensus 134 ~Y~~~G~a~~~~~~~~~~----~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~-df~~~~~~~~~~~~G~~ykF 205 (205)
+|+++|+++++.+.+... .+.+++..++.+|+|++| .++++|++++|+++. ++.+.+.+.|.+++|+.|||
T Consensus 75 ~y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~y-~~~~~~~~~~~~~~~y~~~~~~~d~~~~~~Gl~Y~F 150 (156)
T 2jmm_A 75 IYTRLGGMVWRADTSDKDGNGYISAAEASVSPVFAGGVEY-VIRRRITPEIATRLEYQWTNNASDNGMLSLGVSYRF 150 (156)
T ss_dssp EEEEEEEEEESSBCCCCCSSSCCCCCBCCCCEEEEEEEEE-ECSSSCSSSEEEEEEEEEESSSSCEEEEEEEEEEES
T ss_pred EEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEE-EECCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEC
T ss_conf 9889757899845010257762012567638418878999-743254635589999998178888767999999999
No 6
>2f1v_A Outer membrane protein W; outer membrane protein beta barrel; 2.70A {Escherichia coli K12} PDB: 2f1t_A
Probab=99.80 E-value=1.3e-18 Score=112.29 Aligned_cols=129 Identities=13% Similarity=0.033 Sum_probs=83.9
Q ss_pred CCCCCEEEEEEEEEEECCCEEEEEEEEEEECCC---CCCCCCCCC----CCEEEEEEEEEEEEECCCEEEEEEEEEEEEE
Q ss_conf 777602689985464048379984510132155---566662122----3214899989754312767789885447764
Q gi|254780598|r 72 AHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVP---VLADNIHSL----HGIGGSLRIRGGYEVSDSLLLYATVGPDVAQ 144 (205)
Q Consensus 72 ~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~---~~~~~~~~~----~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~ 144 (205)
.+++...|+.+||+++.... +|..+.+... ......... .......+.+.. ...+++.||+.+|+.+..
T Consensus 33 ~~~~~~~g~~~gY~~~~~~~---~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pY~g~G~g~~~ 108 (197)
T 2f1v_A 33 VTNNTQLGLTFTYMATDNIG---VELLAATPFRHKIGTRATGDIATVHHLPPTLMAQWYFG-DASSKFRPYVGAGINYTT 108 (197)
T ss_dssp ECCEEEEEEEEEEESSSSEE---EEEEEESCEEEEEEETTTEEEEEEEEECCEEEEEEECS-CTTCSEEEEEEEEEEEEE
T ss_pred ECCCEEEEEEEEEEEECCEE---EEEEEEECCCEEECCCCCCCCCEEEECCCEEEEEEEEC-CCCCCEEEEEEECCEEEE
T ss_conf 76870887998999607616---88987754520423445465321775072899998743-678728998972025799
Q ss_pred EEECCCC---------CCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCC--------------CCCCCEEEEEEE
Q ss_conf 4431345---------55677520479973466100488679999999975056--------------556622699999
Q gi|254780598|r 145 KYETGKA---------GEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSK--------------VEGFYNTISLGV 201 (205)
Q Consensus 145 ~~~~~~~---------~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~--------------~~~~~~~~~~G~ 201 (205)
.+.+... ....++.++|.+|+|+|| +|+|||++++||||+++++ ++.+.+.+++||
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~G~~Y-~i~~~~sl~~eyry~~~~~~~~~~~~~~~~~~~~~~d~~~~~~Gv 187 (197)
T 2f1v_A 109 FFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDY-LINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSA 187 (197)
T ss_dssp EEEEEECHHHHHTTEEEEEECCEEEEEEEEEEEE-ECSSSEEEEEEEEEECCEEEEEEEESSCCCCEEEECCCEEEEEEE
T ss_pred EEEECCCCCCCCCCCCCCCCCCCEEEEEECCEEE-EECCCEEEEEEEEEEECCCCEEEECCCCCEEEEEEECCEEEEEEE
T ss_conf 9731035676310111245466387899624899-917983999999999755605784288620005863725999989
Q ss_pred EEEC
Q ss_conf 8539
Q gi|254780598|r 202 GMKF 205 (205)
Q Consensus 202 ~ykF 205 (205)
+|||
T Consensus 188 ~YrF 191 (197)
T 2f1v_A 188 GYRF 191 (197)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9996
No 7
>2x55_A Coagulase/fibrinolysin; plasminogen activator, transmembrane, aspartyl protease, CEL membrane, omptin, protease, hydrolase,; HET: C8E; 1.85A {Yersinia pestis} PDB: 2x56_A* 2x4m_A*
Probab=99.07 E-value=9.3e-09 Score=61.65 Aligned_cols=128 Identities=16% Similarity=0.114 Sum_probs=72.4
Q ss_pred CCCEEEEEEEEEEECCC-EEEEEEEEEEECCCCCC-----C--CCCCCCCEE-EEEEEEEEEEECCCEEEEEEEEEEEEE
Q ss_conf 76026899854640483-79984510132155566-----6--621223214-899989754312767789885447764
Q gi|254780598|r 74 HNAGGSIFAGYNVEDSC-IMYGVEGDVRYTVPVLA-----D--NIHSLHGIG-GSLRIRGGYEVSDSLLLYATVGPDVAQ 144 (205)
Q Consensus 74 ~~~~~G~~~GYn~q~~~-~V~G~e~d~~~~~~~~~-----~--~~~~~~~~~-~~~~~r~Gy~~~~~~l~Y~~~G~a~~~ 144 (205)
++...|+++|||++... ..+|.... +.+.... . ...-++.+. ..+.++..|.+ +++-+.+.+.+...-
T Consensus 124 ~~~~~Gv~~GYq~~~~s~~a~GG~y~--Y~~~~~~g~~~~~~~~I~Ykq~f~~pyiGL~g~y~~-~~~~l~~~~k~s~~v 200 (293)
T 2x55_A 124 ENYKAGITAGYQETRFSWTATGGSYS--YNNGAYTGNFPKGVRVIGYNQRFSMPYIGLAGQYRI-NDFELNALFKFSDWV 200 (293)
T ss_dssp SSEEEEEEEEEEEEEEEEEEESCEEE--ETTTTEEEECCTTCEEEEEEEEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEEEECCEEECCCEEE--CCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEC-CCCEEEEEEEECEEE
T ss_conf 86014457557873031054152687--489972214688871056888723101421357870-542150687102389
Q ss_pred E---EE---CCCCC--CCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC------------------------CC
Q ss_conf 4---43---13455--56775204799734661004886799999999750565------------------------56
Q gi|254780598|r 145 K---YE---TGKAG--EITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKV------------------------EG 192 (205)
Q Consensus 145 ~---~~---~~~~~--~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~------------------------~~ 192 (205)
. .. ..+.. +..+...-+.++++++| .+||++.+++||+|...... +.
T Consensus 201 ~a~d~D~H~~R~~~f~d~~k~~~~~~~~~~~~Y-~vtp~~~l~ve~~~~~~~~~kg~t~~~~~~~G~~~~~~~d~aG~~~ 279 (293)
T 2x55_A 201 RAHDNDEHYMRDLTFREKTSGSRYYGTVINAGY-YVTPNAKVFAEFTYSKYDEGKGGTQTIDKNSGDSVSIGGDAAGISN 279 (293)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEEEEEEEEEEEE-EEETTEEEEEEEEEEEECC----------------CBCGGGEEEEE
T ss_pred EECCCCCCCCCCCEEEECCCCCCEEEEEEEEEE-EECCCEEEEEEEEEEEECCCCCCCEEEECCCCCEECCCCCCCCCCC
T ss_conf 812455323355346624578753888777778-6478837999999986102578627987267742113677543233
Q ss_pred CCEEEEEEEEEEC
Q ss_conf 6226999998539
Q gi|254780598|r 193 FYNTISLGVGMKF 205 (205)
Q Consensus 193 ~~~~~~~G~~ykF 205 (205)
+..++++|+.|||
T Consensus 280 ~~~tvs~Gl~YrF 292 (293)
T 2x55_A 280 KNYTVTAGLQYRF 292 (293)
T ss_dssp EEEEEEEEEEEEE
T ss_pred CCEEEEEEEEEEC
T ss_conf 5569999899977
No 8
>1uyn_X NALP; autotransporter, translocator domain, membrane protein, outer membrane, beta-domain, beta-barrel; HET: CXE; 2.6A {Neisseria meningitidis} SCOP: f.4.5.1 PDB: 1uyo_X*
Probab=98.87 E-value=1.2e-07 Score=55.92 Aligned_cols=128 Identities=22% Similarity=0.217 Sum_probs=79.9
Q ss_pred CCEEEEEEEEEEEC-CCEEEEEEEEEEECCCCCCC--------CCCC----CCCEEEEEEEEEEEEECCCEEEEEEEEEE
Q ss_conf 60268998546404-83799845101321555666--------6212----23214899989754312767789885447
Q gi|254780598|r 75 NAGGSIFAGYNVED-SCIMYGVEGDVRYTVPVLAD--------NIHS----LHGIGGSLRIRGGYEVSDSLLLYATVGPD 141 (205)
Q Consensus 75 ~~~~G~~~GYn~q~-~~~V~G~e~d~~~~~~~~~~--------~~~~----~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a 141 (205)
.....+.+||+|.. +++.+-..+.+.|...+.+. .... .......+..|+.+++++++-+++.+++.
T Consensus 154 ~~~~~~~~gy~~~~~~~~~l~P~~gl~y~~~~~~~f~E~g~~~~l~~~~~~~~~~~~~~Glr~~~~~~~~~~~~~~~~~~ 233 (308)
T 1uyn_X 154 LMQLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWSGNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVE 233 (308)
T ss_dssp EEEEEEEEEECCC---CCEEEEEEEEEEEEEEECCEEEESCTTCCEECCEEEEEEEEEEEEEEEEECSSSEEEEEEEEEE
T ss_pred EEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCEEEECCCCEEEECCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEE
T ss_conf 69999998777882696389799998999972366045077400487167401668999999998547716898887899
Q ss_pred EEEEEEC----C----------CCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf 7644431----3----------45556775204799734661004886799999999750565566226999998539
Q gi|254780598|r 142 VAQKYET----G----------KAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205)
Q Consensus 142 ~~~~~~~----~----------~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205)
..-.... . .....+..+..+.+|+|+++ .++++|++.++|++.. + .+...|.+++|++|||
T Consensus 234 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~G~~~-~~~~~~~~~~~y~~~~-~-~~~~~~~~~~gl~y~F 308 (308)
T 1uyn_X 234 RDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGLGADV-EFGNGWNGLARYSYAG-S-KQYGNHSGRVGVGYRF 308 (308)
T ss_dssp EESSCCCCCCCC-----------------CCEEEEEEEEEEE-EEETTEEEEEEEEEEE-E-TTEEEEEEEEEEEEEC
T ss_pred EECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEEEE-EECCCEEEEEEEEEEE-C-CCCEEEEEEEEEEEEC
T ss_conf 752799851799996488751577325788845999983999-9879999999999997-7-7850489999999989
No 9
>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell outer membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa}
Probab=98.77 E-value=4.7e-07 Score=52.87 Aligned_cols=126 Identities=15% Similarity=0.140 Sum_probs=73.0
Q ss_pred EEEEEEEEEEEC---CCEEEEEEEEEEECCCCCCC---------CCCCC----CCEEEEEEEEEEEEECCCEEEEEEEEE
Q ss_conf 268998546404---83799845101321555666---------62122----321489998975431276778988544
Q gi|254780598|r 77 GGSIFAGYNVED---SCIMYGVEGDVRYTVPVLAD---------NIHSL----HGIGGSLRIRGGYEVSDSLLLYATVGP 140 (205)
Q Consensus 77 ~~G~~~GYn~q~---~~~V~G~e~d~~~~~~~~~~---------~~~~~----~~~~~~~~~r~Gy~~~~~~l~Y~~~G~ 140 (205)
...+.+||++.. +++.+..++.+.|...+.+. ..... ......+..|+.+.++..+.+++.++|
T Consensus 477 ~~~~~~gy~~~~~~~~~~~l~P~~~l~y~~~~~~~y~E~g~~~~~l~v~~~~~~s~~~~~G~~~~~~~~~~~~~~~~~~~ 556 (632)
T 3kvn_X 477 AFSARLGYDIAQQADSPWHLSPFVSADYARVEVDGYSEKGASATALDYDDQKRSSKRLGAGLQGKYAFGSDTQLFAEYAH 556 (632)
T ss_dssp EEEEEEEECSCSCTTCSEEEEEEEEEEEEEEEECCCBCSSCCTTCEEECCEEEEEEEEEEEEEEEEESSSSEEEEEEEEE
T ss_pred EEEEEECEEEECCCCCCEEEEEEEEEEEEEEECCCEEECCCCCCCEEECCCCCCEEEEEEEEEEEEECCCCEEEEEEEEE
T ss_conf 99999356750256686899999999999985375354178720069816642089999999999961882689999999
Q ss_pred EEEEEEE--------CC------CCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf 7764443--------13------45556775204799734661004886799999999750565566226999998539
Q gi|254780598|r 141 DVAQKYE--------TG------KAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205)
Q Consensus 141 a~~~~~~--------~~------~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205)
..--.+. .. .....+..+....+++|+++ .+++++.+.++|++. +++. ...+.+++|+.|+|
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~-~~~~~~~l~~~y~~~-~~~~-~~~~~~~~gl~~~F 632 (632)
T 3kvn_X 557 EREYEDDTQDLTMSLNSLPGNRFTLEGYTPQDHLNRVSLGFSQ-KLAPELSLRGGYNWR-KGED-DTQQSVSLALSLDF 632 (632)
T ss_dssp EEESCCCCCEEEEEETTCTTCCEEEECCCCCSEEEEEEEEEEE-EEETTEEEEEEEEEE-EETT-EEEEEEEEEEEEEC
T ss_pred EEECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEEEE-EECCCEEEEEEEEEE-ECCC-CEEEEEEEEEEEEC
T ss_conf 8220589731799997378853788445578868999999999-988988999999999-8889-68999999999989
No 10
>2qom_A Serine protease ESPP; outer membrane protein, beta-barrel, beta-domain, autotransporter, hydrolase, plasmid, secreted, transmembrane; 2.66A {Escherichia coli O157}
Probab=98.63 E-value=1.7e-06 Score=49.97 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=86.7
Q ss_pred CCCCCCCCCCCCCCCC------------CCCCCCEEEEEEEEEEEC-CCEEEEEEEEEEECCCCCCC--------CCCCC
Q ss_conf 1000122333344667------------777760268998546404-83799845101321555666--------62122
Q gi|254780598|r 55 GPYAGLSALYNGSFGE------------EAHHNAGGSIFAGYNVED-SCIMYGVEGDVRYTVPVLAD--------NIHSL 113 (205)
Q Consensus 55 G~y~g~~~g~~~~~~~------------~~~~~~~~G~~~GYn~q~-~~~V~G~e~d~~~~~~~~~~--------~~~~~ 113 (205)
++|+-..++++....+ .+...+...+.+||+++. +++.+-..+.+.+.....+. ....+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~i~P~~~l~y~~~~~~~~~e~~~~~~l~~~ 172 (285)
T 2qom_A 93 GAYIDLIGKYVHHDNEYTATFAGLGTRDYSTHSWYAGAEAGYRYHVTEDAWIEPQAELVYGSVSGKQFAWKDQGMHLSMK 172 (285)
T ss_dssp SEEEEEEEEEEEEEEEEEC---CCCCEEEEEEEEEEEEEEEECEESSSSEEEEEEEEEEEEEEEEEEC--------CCCE
T ss_pred CEEEEEEEEEEEECCCEEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEEEECCCEEECCCCCCEEEE
T ss_conf 35786656889860423761167532255453001001678877718980782589999999864850103743205881
Q ss_pred ----CCEEEEEEEEEEEEECC---CEEEEEEEEEEEEEEEECCC---------CCCCCCCCEEEEEEEEEEEECCCCCEE
Q ss_conf ----32148999897543127---67789885447764443134---------555677520479973466100488679
Q gi|254780598|r 114 ----HGIGGSLRIRGGYEVSD---SLLLYATVGPDVAQKYETGK---------AGEITPIAIGGTAGVGVEVGGLSESLV 177 (205)
Q Consensus 114 ----~~~~~~~~~r~Gy~~~~---~~l~Y~~~G~a~~~~~~~~~---------~~~~~~~~~g~~~G~Gvey~~it~~~~ 177 (205)
......+..|+++.+.. .+.||+.+++.+- ...+.. .......+....+++|+++ .++++++
T Consensus 173 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~-~~~~~~~ 250 (285)
T 2qom_A 173 DKDYNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFD-LLANGETVLRDASGEKRIKGEKDSRMLMSVGLNA-EIRDNVR 250 (285)
T ss_dssp EEEEEEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEE-EEETCTTBCCCSSSSCCSSSSEEEEEEEEEEEEE-EETTTEE
T ss_pred CCCCEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEE-CCCCCEEEECCCCCEEEECCCCCCEEEEEEEEEE-EECCCEE
T ss_conf 4750268986411402689738807999999999998-2788629971566304512688868999998999-9899999
Q ss_pred EEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf 9999999750565566226999998539
Q gi|254780598|r 178 ARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205)
Q Consensus 178 ~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205)
+.++|.+.. +........+.+|+.|+|
T Consensus 251 ~~~~~~~~~-g~~~~~~~~~~~glr~~F 277 (285)
T 2qom_A 251 FGLEFEKSA-FGKYNVDNAVNANFRYSF 277 (285)
T ss_dssp ECEEEEEEE-SSSSEEEEEEEECCEEEE
T ss_pred EEEEEEEEE-CCCCCEEEEEEEEEEEEE
T ss_conf 999999998-788744079999999998
No 11
>3aeh_A Hemoglobin-binding protease HBP autotransporter; beta-barrel, auto-proteolytic, reaction intermediate, mutant membrane, cell outer membrane; 2.00A {Escherichia coli}
Probab=98.57 E-value=7.1e-06 Score=46.84 Aligned_cols=129 Identities=13% Similarity=0.097 Sum_probs=71.1
Q ss_pred CCEEEEEEEEEEECC-CEEEEEEEEEEECCCCCCCC--------CCCC----CCEEEEEEEEEEEEEC-CCEEEEEEEEE
Q ss_conf 602689985464048-37998451013215556666--------2122----3214899989754312-76778988544
Q gi|254780598|r 75 NAGGSIFAGYNVEDS-CIMYGVEGDVRYTVPVLADN--------IHSL----HGIGGSLRIRGGYEVS-DSLLLYATVGP 140 (205)
Q Consensus 75 ~~~~G~~~GYn~q~~-~~V~G~e~d~~~~~~~~~~~--------~~~~----~~~~~~~~~r~Gy~~~-~~~l~Y~~~G~ 140 (205)
.+...+.+||+++.. +|.+-..+.+.|.....+.- .... ......+..|+.+.+. .+..++..+++
T Consensus 154 ~~~~~~e~gy~~~~~~~~~l~P~~~l~y~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 233 (308)
T 3aeh_A 154 SLYAGAEVGYRYHLTDTTFVEPQAELVWGRLQGQTFNWNDSGMDVSMRRNSVNPLVGRTGVVSGKTFSGKDWSLTARAGL 233 (308)
T ss_dssp EEEEEEEEEECEESSSSEEEEEEEEEEEEEEEEC---------------CEECCEEEEEEEEEEEEEECSSEEEEEEEEE
T ss_pred EEEEEEEEEEEEECCCCCEEEEEEEEEEEEEECCCEEECCCCCEEEEECCCCCHHHHHHHEEEEEEEECCCEEEEEEEEE
T ss_conf 89999996345533887177168899999985375010475210574046532122131004558985487159999999
Q ss_pred EEEEEEECC----------CCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf 776444313----------45556775204799734661004886799999999750565566226999998539
Q gi|254780598|r 141 DVAQKYETG----------KAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205)
Q Consensus 141 a~~~~~~~~----------~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205)
.+....... .....+.......+++|+++ .+++++++.++|.+...++... .+.+.+|+.|+|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~-~~~~~~~l~~~~~~~~g~~~~~-~~~~~~g~ry~F 306 (308)
T 3aeh_A 234 HYEFDLTDSADVHLKDAAGEHQINGRKDSRMLYGVGLNA-RFGDNTRLGLEVERSAFGKYNT-DDAINANIRYSF 306 (308)
T ss_dssp EEEEEESCC----------------CEEEEEEEEEEEEE-EETTTEEEEEEEEEEESCSSEE-EEEEEEEEEEEE
T ss_pred EEEEECCCCCEEEEECCCCEEEECCCCCCEEEEEEEEEE-EECCCEEEEEEEEEEECCCCCE-EEEEEEEEEEEE
T ss_conf 999851887159940455404604778868999999999-9889999999999998798744-179999999996
No 12
>2j1n_A Outer membrane protein C; beta-barrel, ION transport, non-specific porin, general porin, osmoporin, transmembrane transport; HET: D12; 2.0A {Escherichia coli} PDB: 2j4u_P 2zle_D 2ixx_A* 2xe1_A* 2xe2_A* 2ixw_A* 2xe5_A* 2xe3_A* 2xg6_A 1osm_A*
Probab=98.19 E-value=0.00014 Score=40.15 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=48.8
Q ss_pred EEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC-------CC
Q ss_conf 98975431276778988544776444313455567752047997346610048867999999997505655-------66
Q gi|254780598|r 121 RIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVE-------GF 193 (205)
Q Consensus 121 ~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~-------~~ 193 (205)
..-+.|.+.+.+.+++ ++.+.+.+........++. --.+-+|++| .++++..+-+||++.+..+.. .+
T Consensus 260 ~~~~~Y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~vG~~Y-~lsKrt~~Y~~y~~~~~~~~~~~~~~~~~~ 334 (346)
T 2j1n_A 260 EAVAQYQFDFGLRPSL--AYLQSKGKNLGRGYDDEDI--LKYVDVGATY-YFNKNMSTYVDYKINLLDDNQFTRDAGINT 334 (346)
T ss_dssp EEEEEECCTTSEEEEE--EEEEEEEESCSTTCCSEEE--EEEEEEEEEE-ESSSSEEEEEEEEEECCCCCHHHHHHTCCC
T ss_pred EEEEEEEECCCEEEEE--EEEEEECCCCCCCCCCCCC--EEEEEEEEEE-EECCCEEEEEEEEEECCCCCCCCCCCCCCC
T ss_conf 9999999867648999--9999963434567787650--6999999999-936998999999975356632123468766
Q ss_pred CEEEEEEEEEEC
Q ss_conf 226999998539
Q gi|254780598|r 194 YNTISLGVGMKF 205 (205)
Q Consensus 194 ~~~~~~G~~ykF 205 (205)
.+.|.||+-|+|
T Consensus 335 ~~~~~vGlr~~F 346 (346)
T 2j1n_A 335 DNIVALGLVYQF 346 (346)
T ss_dssp SCEEEEEEEEEC
T ss_pred CCEEEEEEEEEC
T ss_conf 778999999989
No 13
>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}
Probab=98.15 E-value=0.00017 Score=39.71 Aligned_cols=84 Identities=17% Similarity=0.054 Sum_probs=50.6
Q ss_pred EEEEEEEECCCEEEEEEEEEEEEE-EEE---C----CCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECC--C-
Q ss_conf 989754312767789885447764-443---1----3455567752047997346610048867999999997505--6-
Q gi|254780598|r 121 RIRGGYEVSDSLLLYATVGPDVAQ-KYE---T----GKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYS--K- 189 (205)
Q Consensus 121 ~~r~Gy~~~~~~l~Y~~~G~a~~~-~~~---~----~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~--~- 189 (205)
..-+.|.+++++++-+..-+..++ .+. + ........++..+.+-+|+|| .++++|.+|+.|.|..=. +
T Consensus 289 ~~G~~~~~~~~~~l~~d~~~~~ws~~~~~~~~~~~~~~~~~~~~~~d~~~~~~G~ey-~~~~~l~lRaG~~y~~~p~~~~ 367 (451)
T 3dwo_X 289 SLDWVHQFNDRLSLGASATWTEWSSFQDLTLKSHGNTIVSIPYTYRNTWTLAVGGDY-KVTDQWTMRAGVAYDQTPTHNA 367 (451)
T ss_dssp EEEEEEECSSSEEEEEEEEEECGGGCCEEEEEETTEEEEEEECCCCCEEEEEEEEEE-ESSSSEEEEEEEEEECCSCCTT
T ss_pred EEEEEEEECCCEEEECCCEEEEEEEEEECCCCCCCCCCCCCCCEECCCEEEEEEEEE-EECCCEEEEEEEEECCCCCCCC
T ss_conf 998999705654783030566642000002246886443231021121048877899-9389889999999776787854
Q ss_pred ------CCCCCEEEEEEEEEEC
Q ss_conf ------5566226999998539
Q gi|254780598|r 190 ------VEGFYNTISLGVGMKF 205 (205)
Q Consensus 190 ------~~~~~~~~~~G~~ykF 205 (205)
-+.+.+.+++|++|||
T Consensus 368 ~~~~~~p~~~~~~~s~G~gy~~ 389 (451)
T 3dwo_X 368 TRDPRIPDGDRYFASLGAGYRF 389 (451)
T ss_dssp TCCSSSCCCCEEEEEEEEEEEC
T ss_pred CCCCCEECCCCEEEEEEEEEEE
T ss_conf 3253001568779998799997
No 14
>3dwn_A Long-chain fatty acid transport protein; beta barrel, outer membrane protein, lipid transport, membrane, outer membrane, phage recognition; HET: LDA; 2.50A {Escherichia coli} PDB: 1t16_A* 1t1l_A* 2r4p_A* 2r4n_A* 2r4l_A* 2r4o_A* 2r89_A 2r8a_A* 2r88_A
Probab=98.06 E-value=0.00022 Score=39.12 Aligned_cols=49 Identities=10% Similarity=-0.034 Sum_probs=35.5
Q ss_pred CCCEEEEEEEEEEEECCCCCEEEEEEEEEEECC---------CCCCCCEEEEEEEEEEC
Q ss_conf 752047997346610048867999999997505---------65566226999998539
Q gi|254780598|r 156 PIAIGGTAGVGVEVGGLSESLVARLEYRASKYS---------KVEGFYNTISLGVGMKF 205 (205)
Q Consensus 156 ~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~---------~~~~~~~~~~~G~~ykF 205 (205)
..+..+.+.+|+|| .++++|.+|+.|.|.+=. --+.+.+.+++|++|||
T Consensus 320 ~~~d~~~~~~G~ey-~~~~~l~lRaG~~y~~sp~~~~~~~~~~p~~~~~~~s~G~~~~~ 377 (427)
T 3dwn_A 320 GFKDAYRIALGTTY-YYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAF 377 (427)
T ss_dssp CCCCEEEEEEEEEE-CCSSSEEEEEEEEEECCCCCGGGCCTTSCCCCEEEEEEEEEEES
T ss_pred CCCEEEEEEEEEEE-ECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEC
T ss_conf 64115899999999-92898899999997667878665243245679889998898981
No 15
>1pho_A Phosphoporin; outer membrane protein; 3.00A {Escherichia coli} SCOP: f.4.3.1
Probab=97.93 E-value=0.00049 Score=37.37 Aligned_cols=45 Identities=13% Similarity=0.284 Sum_probs=35.4
Q ss_pred EEEEEEEEEEECCCCCEEEEEEEEEEECCCCC----CCCEEEEEEEEEEC
Q ss_conf 47997346610048867999999997505655----66226999998539
Q gi|254780598|r 160 GGTAGVGVEVGGLSESLVARLEYRASKYSKVE----GFYNTISLGVGMKF 205 (205)
Q Consensus 160 g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~----~~~~~~~~G~~ykF 205 (205)
-..+-+|+|| .++++..+.+||++.++...+ .+.+.+.|||-|+|
T Consensus 282 ~~~~~vG~~Y-~lsk~~~~y~ey~~~~~d~~~~~~~~~~~~~~vG~r~~F 330 (330)
T 1pho_A 282 VNYIDVGATY-YFNKNMSAFVDYKINQLDSDNKLNINNDDIVAVGMTYQF 330 (330)
T ss_dssp EEEEEEEEEE-ESSSSEEEEEEEEEECCCSSCTTCCCCCCEEEEEEEEEC
T ss_pred EEEEEEEEEE-EECCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEC
T ss_conf 5999999999-917997999999998325776676666889999999989
No 16
>2fgq_X OMP32, outer membrane porin protein 32; malate, outer membrane protein; HET: BOG; 1.45A {Delftia acidovorans} SCOP: f.4.3.1 PDB: 2fgr_A 1e54_A
Probab=97.78 E-value=0.00089 Score=36.04 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=33.8
Q ss_pred EEEEEEEEEEECCCCCEEEEEEEEEEECCCC-----------------CCCCEEEEEEEEEEC
Q ss_conf 4799734661004886799999999750565-----------------566226999998539
Q gi|254780598|r 160 GGTAGVGVEVGGLSESLVARLEYRASKYSKV-----------------EGFYNTISLGVGMKF 205 (205)
Q Consensus 160 g~~~G~Gvey~~it~~~~~r~EY~y~df~~~-----------------~~~~~~~~~G~~ykF 205 (205)
...+.+|+|| .|+++..+-+||-|.+..+. +.+...|.+||.++|
T Consensus 271 ~~~~~lg~~Y-~lSKrT~lYa~~~~~~n~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Gmrh~F 332 (332)
T 2fgq_X 271 AHQITLGYVH-NLSKRTALYGNLAFLKNKDASTLGLQAKGVYAGGVQAGESQTGVQVGIRHAF 332 (332)
T ss_dssp EEEEEEEEEE-ESSSSEEEEEEEEEEEECTTCCCCCCBTTTBCSCCCTTCEEEEEEEEEEEEC
T ss_pred CEEEEEEEEE-ECCCCCHHHHEEHEEECCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEEEEC
T ss_conf 2299999999-5267715500253042368774210111002478788987599999999989
No 17
>2zfg_A Outer membrane protein F; OMPF porin, ordered waters, ION transport, phage recognition, transmembrane, transport; HET: C8E; 1.59A {Escherichia coli} SCOP: f.4.3.1 PDB: 1opf_A* 2omf_A* 2zld_A 3k19_A 3k1b_A 3hw9_A* 3hwb_A* 1hxx_A 3fyx_A* 1bt9_A 1mpf_A* 1gfq_A* 1gfp_A* 1gfm_A* 1gfo_A* 1hxu_A 1hxt_A* 1gfn_A*
Probab=97.77 E-value=0.00094 Score=35.91 Aligned_cols=77 Identities=13% Similarity=0.188 Sum_probs=47.0
Q ss_pred EEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC----CCCEEEE
Q ss_conf 975431276778988544776444313455567752047997346610048867999999997505655----6622699
Q gi|254780598|r 123 RGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVE----GFYNTIS 198 (205)
Q Consensus 123 r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~----~~~~~~~ 198 (205)
-+.|.+.+.+.+.+ ++...+.+.... ..+......+-+|++| .+++++.+.+||++.+..+.+ .+.+.+.
T Consensus 260 ~~~y~~~~~~~~~~--~y~~~~~~~~~~---~~~~~~~~~~~~G~~Y-~lsk~~~~y~~y~~~~~d~~~~~~~~~~~~~~ 333 (340)
T 2zfg_A 260 VAQYQFDFGLRPSI--AYTKSKAKDVEG---IGDVDLVNYFEVGATY-YFNKNMSTYVDYIINQIDSDNKLGVGSDDTVA 333 (340)
T ss_dssp EEEECCTTSEEEEE--EEEEEEEEEETT---TEEEEEEEEEEEEEEE-EEETTEEEEEEEEEECCCTTCTTCCCCBCEEE
T ss_pred EEEEEECCCEEEEE--EEEEEEECCCCC---CCCCCCEEEEEEEEEE-EECCCEEEEEEEEEEECCCCCCCCCCCCCEEE
T ss_conf 99998457537899--999996034567---7876524899999999-91689899999999802577767777787999
Q ss_pred EEEEEEC
Q ss_conf 9998539
Q gi|254780598|r 199 LGVGMKF 205 (205)
Q Consensus 199 ~G~~ykF 205 (205)
||+-|+|
T Consensus 334 vGlry~F 340 (340)
T 2zfg_A 334 VGIVYQF 340 (340)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
T ss_conf 9999989
No 18
>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A*
Probab=97.76 E-value=0.00098 Score=35.84 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=34.7
Q ss_pred EEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf 799734661004886799999999750565566226999998539
Q gi|254780598|r 161 GTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205)
Q Consensus 161 ~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205)
-.+++|++| .|++++++.+||.+.+..+ +.+.+.+||.|+|
T Consensus 261 ~~~~lG~~Y-~lsk~~~~~~~y~~~~~d~---~~~~~~~G~~~~F 301 (301)
T 2por_A 261 TYYGLGASY-DLGGGASIVGGIADNDLPN---SDMVADLGVKFKF 301 (301)
T ss_dssp EEEEEEEEE-EEETTEEEEEEEEEECSSS---CCCEEEEEEEEEC
T ss_pred EEEEEEEEE-ECCCCEEEEEEEEEEECCC---CCEEEEEEEEEEC
T ss_conf 899999999-8899989999999981689---9647999879989
No 19
>3dwn_A Long-chain fatty acid transport protein; beta barrel, outer membrane protein, lipid transport, membrane, outer membrane, phage recognition; HET: LDA; 2.50A {Escherichia coli} PDB: 1t16_A* 1t1l_A* 2r4p_A* 2r4n_A* 2r4l_A* 2r4o_A* 2r89_A 2r8a_A* 2r88_A
Probab=97.65 E-value=0.0015 Score=34.90 Aligned_cols=85 Identities=9% Similarity=0.003 Sum_probs=46.6
Q ss_pred EEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCC-CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC-----
Q ss_conf 899989754312767789885447764443134555-67752047997346610048867999999997505655-----
Q gi|254780598|r 118 GSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGE-ITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVE----- 191 (205)
Q Consensus 118 ~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~-~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~----- 191 (205)
..++.-+.|.+++++- .++|+++.+.-....... .......+.+++|+.| .++++|.+.+.|+|....+++
T Consensus 325 ~~~~~G~ey~~~~~l~--lRaG~~y~~sp~~~~~~~~~~p~~~~~~~s~G~~~-~~~~~~~id~~y~y~~~~~~~~~~~~ 401 (427)
T 3dwn_A 325 YRIALGTTYYYDDNWT--FRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTY-AFNKDASVDVGVSYMHGQSVKINEGP 401 (427)
T ss_dssp EEEEEEEEECCSSSEE--EEEEEEEECCCCCGGGCCTTSCCCCEEEEEEEEEE-ESSSSEEEEEEEEEEEECCEEEEETT
T ss_pred EEEEEEEEEECCCCEE--EEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEE-ECCCCEEEEEEEEEEECCCCEECCCC
T ss_conf 8999999999289889--99999976678786652432456798899988989-81898099999999985752050674
Q ss_pred ------CCCEEEEEEEEEEC
Q ss_conf ------66226999998539
Q gi|254780598|r 192 ------GFYNTISLGVGMKF 205 (205)
Q Consensus 192 ------~~~~~~~~G~~ykF 205 (205)
...+.+.++++|||
T Consensus 402 ~~~~~~~~~~~~~~~~~y~F 421 (427)
T 3dwn_A 402 YQFESEGKAWLFGTNFNYAF 421 (427)
T ss_dssp EEEEEEEEEEEEEEEEEEEC
T ss_pred EEEEEEEEEEEEEEEEEEEE
T ss_conf 15788768999999999996
No 20
>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}
Probab=97.58 E-value=0.0011 Score=35.62 Aligned_cols=85 Identities=12% Similarity=0.026 Sum_probs=51.8
Q ss_pred EEEEEEEEECCCEEEEEEEEEEEEEE-EEC------C-------CCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEE
Q ss_conf 99897543127677898854477644-431------3-------455567752047997346610048867999999997
Q gi|254780598|r 120 LRIRGGYEVSDSLLLYATVGPDVAQK-YET------G-------KAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRAS 185 (205)
Q Consensus 120 ~~~r~Gy~~~~~~l~Y~~~G~a~~~~-~~~------~-------~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~ 185 (205)
++..+.|.+.+++.+-+...+..+.. +.. . ...........+.+.+|+|| .++++|.+|+.|+|.
T Consensus 281 ~~~g~~~~~~~~~~l~~~~~~~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~G~ey-~~~~~~~lRaG~~~~ 359 (441)
T 3bry_A 281 LTVGISHQFNDQLSVSADYQRVFWSSVMKDMNVGFVQSGSAANLDLSLPQNYRDISVFGIGAEY-RYNAKWTFRGGFHYA 359 (441)
T ss_dssp EEEEEEEESSSSEEEEEEEEEECGGGCCSEEEEEECCSSSCCCCCCEEECCCCCEEEEEEEEEE-EEETTEEEEEEEEEE
T ss_pred EECCCEEEECCCCEEECCEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE-EECCCEEEEEEEEEC
T ss_conf 5312136506760253121277610200223223456665555443322466523799866799-967888999999976
Q ss_pred ECCC---------CCCCCEEEEEEEEEEC
Q ss_conf 5056---------5566226999998539
Q gi|254780598|r 186 KYSK---------VEGFYNTISLGVGMKF 205 (205)
Q Consensus 186 df~~---------~~~~~~~~~~G~~ykF 205 (205)
.-.- -+.+.+.+++|++|++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~s~G~g~~~ 388 (441)
T 3bry_A 360 QEAIPGNMLLAVVPATPTTSLTGGVSYAI 388 (441)
T ss_dssp EC---------------CEEEEEEEEEES
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEEEC
T ss_conf 67777753343334568789998998984
No 21
>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*
Probab=97.56 E-value=0.0021 Score=34.18 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=37.3
Q ss_pred CCCEEEEEEEEEEEECCCCCEEEEEEEEEEECC---------CCCCCCEEEEEEEEEEC
Q ss_conf 752047997346610048867999999997505---------65566226999998539
Q gi|254780598|r 156 PIAIGGTAGVGVEVGGLSESLVARLEYRASKYS---------KVEGFYNTISLGVGMKF 205 (205)
Q Consensus 156 ~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~---------~~~~~~~~~~~G~~ykF 205 (205)
..+..+.+.+|+|| .++++|.+|+.|+|.+=. -.+.+.+.+++|++||+
T Consensus 329 ~~~d~~~~~~G~ey-~~~~~l~lRaGy~y~~~~~~~~~~~~~~p~~~~~~~s~G~~~~~ 386 (439)
T 3bs0_A 329 RYQDITVASIGTAY-KYNNDLTLRAGYSYAQQALDSELILPVIPAYLKRHVTFGGEYDF 386 (439)
T ss_dssp CCCCEEEEEEEEEE-ECSSSEEEEEEEEECC------CCCTTSCCCCSEEEEEEEEEES
T ss_pred CCCCEEEEEEEEEE-EECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEC
T ss_conf 34312799987789-95798899999997567778542054355778789998899982
No 22
>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}
Probab=97.47 E-value=0.0027 Score=33.60 Aligned_cols=84 Identities=18% Similarity=0.168 Sum_probs=49.7
Q ss_pred EEEEEEEEEECCCEEEEEEEEEEEEEEEECCC---CCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC----
Q ss_conf 99989754312767789885447764443134---55567752047997346610048867999999997505655----
Q gi|254780598|r 119 SLRIRGGYEVSDSLLLYATVGPDVAQKYETGK---AGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVE---- 191 (205)
Q Consensus 119 ~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~---~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~---- 191 (205)
.++.-+-|.+++++.+ ++|+.+.+.-.+.. ....+..+..+++|+|..+ -.+++|++.+-|.|....+.+
T Consensus 338 ~~~~G~ey~~~~~l~l--RaG~~y~~~p~~~~~~~~~~p~~~~~~~s~G~gy~~-~~~~~~~~d~ay~~~~~~~~~~~~~ 414 (451)
T 3dwo_X 338 TLAVGGDYKVTDQWTM--RAGVAYDQTPTHNATRDPRIPDGDRYFASLGAGYRF-QSMPELSIDAAYSRQFVKEVPLKTV 414 (451)
T ss_dssp EEEEEEEEESSSSEEE--EEEEEEECCSCCTTTCCSSSCCCCEEEEEEEEEEEC-SSSSSEEEEEEEEEEEECCEEECCB
T ss_pred EEEEEEEEEECCCEEE--EEEEEECCCCCCCCCCCCCEECCCCEEEEEEEEEEE-CCCCCEEEEEEEEEEECCCCCCCCC
T ss_conf 4887789993898899--999997767878543253001568779998799997-8987489999999997376311234
Q ss_pred ---------------CCCEEEEEEEEEEC
Q ss_conf ---------------66226999998539
Q gi|254780598|r 192 ---------------GFYNTISLGVGMKF 205 (205)
Q Consensus 192 ---------------~~~~~~~~G~~ykF 205 (205)
.+.+.+.++++|||
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~F 443 (451)
T 3dwo_X 415 NQDRLGGGRLDGRATSKGQVFSLSATYDF 443 (451)
T ss_dssp CCGGGTSCEEEEEEEEEEEEEEEEEEECC
T ss_pred CCCCCCCCCEEEEEEEEEEEEEEEEEEEE
T ss_conf 65656776113799988899999999997
No 23
>1i78_A Protease VII; integral outer membrane protein, beta barrel, hydrolase; HET: BOG; 2.60A {Escherichia coli K12} SCOP: f.4.4.1
Probab=97.34 E-value=0.004 Score=32.72 Aligned_cols=48 Identities=10% Similarity=0.021 Sum_probs=35.4
Q ss_pred CCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC-----------------------CCCCEEEEEEEEEEC
Q ss_conf 5204799734661004886799999999750565-----------------------566226999998539
Q gi|254780598|r 157 IAIGGTAGVGVEVGGLSESLVARLEYRASKYSKV-----------------------EGFYNTISLGVGMKF 205 (205)
Q Consensus 157 ~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~-----------------------~~~~~~~~~G~~ykF 205 (205)
....+.+.+-+.| .+||++++.+|.+|..+... +...-++++|+-|||
T Consensus 227 ~~~y~~~~~~agY-~vtp~~sl~~e~~y~~~~~~kG~t~~~d~~tg~~~~~~d~aGi~n~~~tvs~GL~Y~F 297 (297)
T 1i78_A 227 DQNYYSVAVNAGY-YVTPNAKVYVEGAWNRVTNKKGNTSLYDHNNNTSDYSKNGAGIENYNFITTAGLKYTF 297 (297)
T ss_dssp EEEEEEEEEEEEE-EEETTEEEEEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEEEEEEEEEC
T ss_pred CCCEEEEEEEEEE-EECCCEEEEEEEEEEEEECCCCCEEEEECCCCEEECCCCCCCCCCCCEEEEEEEEEEC
T ss_conf 8765899999889-8679879999999999982358609984688614326786460211369999888879
No 24
>2f1c_X OMPG, outer membrane protein G; beta barrel; HET: C8E; 2.30A {Escherichia coli K12} PDB: 2wvp_A* 2jqy_A 2iwv_A* 2iww_A*
Probab=97.02 E-value=0.0089 Score=30.91 Aligned_cols=84 Identities=17% Similarity=0.138 Sum_probs=49.5
Q ss_pred EEEEEEEEECC---CEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC---CCC
Q ss_conf 99897543127---677898854477644431345556775204799734661004886799999999750565---566
Q gi|254780598|r 120 LRIRGGYEVSD---SLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKV---EGF 193 (205)
Q Consensus 120 ~~~r~Gy~~~~---~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~---~~~ 193 (205)
-..|++++++. .+.||++-++.......... ....+......+|+=++| .|+++|.+-+||-|-.-... +.+
T Consensus 191 ~QiR~~~~~~~g~~sispy~R~~l~~~~~~~~~~-~~~~~~~~~~R~g~~~~Y-~i~~~~~l~gEy~ye~~~~~~~~~~~ 268 (286)
T 2f1c_X 191 QEIRAYLPLTLGNHSVTPYTRIGLDRWSNWDWQD-DIEREGHDFNRVGLFYGY-DFQNGLSVSLEYAFEWQDHDEGDSDK 268 (286)
T ss_dssp EEEEEECCEEETTEEEEEEEEEEEEEECC-------------CCEEEEEEEEE-ECSSSEEEEEEEEEEECC------CC
T ss_pred EEEEEEEEEEECCEEECEEEEEEECCCCCCCCCC-CCEEECCCCEEEEEEEEC-CCCCCEEEEEEEEEEEECCCCCCCCE
T ss_conf 8999999986087188746998604541126667-732743552699999811-03896699999999996157788735
Q ss_pred CEEEEEEEEEEC
Q ss_conf 226999998539
Q gi|254780598|r 194 YNTISLGVGMKF 205 (205)
Q Consensus 194 ~~~~~~G~~ykF 205 (205)
.+-+.|||.|.|
T Consensus 269 ~~~~~vGv~YsF 280 (286)
T 2f1c_X 269 FHYAGVGVNYSF 280 (286)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEEEE
T ss_conf 887888789998
No 25
>3a2s_X Outer membrane protein II; beta barrel, porin, neisseria mening cell membrane, cell outer membrane, ION transport, membrane transmembrane; HET: SUC LDA; 2.20A {Neisseria meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X*
Probab=96.96 E-value=0.01 Score=30.64 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=34.7
Q ss_pred EEEEEEEEEECCCCCEEEEEEEEEEECCCCCC--CCEEEEEEEEEEC
Q ss_conf 79973466100488679999999975056556--6226999998539
Q gi|254780598|r 161 GTAGVGVEVGGLSESLVARLEYRASKYSKVEG--FYNTISLGVGMKF 205 (205)
Q Consensus 161 ~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~--~~~~~~~G~~ykF 205 (205)
-.+.+|++| .|+++..+-+||.|.+..+-.. +...+.+||-|+|
T Consensus 310 ~~~~lG~~Y-~lSKrt~~Y~~~~~~~~~~~~~~~~~~~~~~Glrh~F 355 (355)
T 3a2s_X 310 DQVIVGADY-DFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF 355 (355)
T ss_dssp EEEEEEEEE-ESSSSEEEEEEEEEEEESSTTSCEEEEEEEEEEEEEC
T ss_pred EEEEEEEEE-EECCCEEEEEEEEEEECCCCCCCCCEEEEEEEEEEEC
T ss_conf 999999999-8058738999999999568988863179999999989
No 26
>3prn_A Porin; integral membrane protein, pore eyelet mutant; HET: C8E; 1.90A {Rhodobacter blasticus} SCOP: f.4.3.1 PDB: 1bh3_A* 1prn_A* 7prn_A* 6prn_A* 5prn_A* 2prn_A* 8prn_A* 1h6s_1
Probab=96.84 E-value=0.013 Score=30.05 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=30.9
Q ss_pred EEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf 99734661004886799999999750565566226999998539
Q gi|254780598|r 162 TAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205)
Q Consensus 162 ~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205)
.+++|++| .|++++++.++|.+.+. +.....+||.|.|
T Consensus 252 ~~~~g~~Y-~l~~~~~l~a~~~~~~~-----d~t~~~~Gv~~~F 289 (289)
T 3prn_A 252 AYGIGADY-QFAEGVKVSGSVQSGFA-----NETVADVGVRFDF 289 (289)
T ss_dssp EEEEEEEE-EEETTEEEEEEEEECTT-----CCEEEEEEEEEEC
T ss_pred EEEEEEEE-ECCCCEEEEEEEEEECC-----CCCCEEEEEEEEC
T ss_conf 89999999-76999799999999538-----9853603778889
No 27
>3aeh_A Hemoglobin-binding protease HBP autotransporter; beta-barrel, auto-proteolytic, reaction intermediate, mutant membrane, cell outer membrane; 2.00A {Escherichia coli}
Probab=96.75 E-value=0.015 Score=29.69 Aligned_cols=32 Identities=13% Similarity=0.011 Sum_probs=18.9
Q ss_pred CCCEEEEEEEEEEEC----CCEEEEEEEEEEECCCC
Q ss_conf 760268998546404----83799845101321555
Q gi|254780598|r 74 HNAGGSIFAGYNVED----SCIMYGVEGDVRYTVPV 105 (205)
Q Consensus 74 ~~~~~G~~~GYn~q~----~~~V~G~e~d~~~~~~~ 105 (205)
+....|+.+|++.+. +++++|+...+...+.+
T Consensus 63 ~~~~~G~~~G~D~~~~~~~~~~~~G~~~~y~~s~~~ 98 (308)
T 3aeh_A 63 TDHYTLLQMGADRKHELGSMDLFTGVMATYTDTDAS 98 (308)
T ss_dssp EEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEE
T ss_pred CEEEEEEEEEEECCCCCCCCCEEEEEEEEEEEEEEC
T ss_conf 401677998303204666664899999988610004
No 28
>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*
Probab=96.19 E-value=0.036 Score=27.81 Aligned_cols=83 Identities=14% Similarity=0.107 Sum_probs=38.9
Q ss_pred EEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCC-CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC-------
Q ss_conf 9989754312767789885447764443134555-67752047997346610048867999999997505655-------
Q gi|254780598|r 120 LRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGE-ITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVE------- 191 (205)
Q Consensus 120 ~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~-~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~------- 191 (205)
++.-+.|.++|++ -.++|+.+.+.-.+..... ......-+.+++|+.| .++++|.+.+-|.|...++++
T Consensus 336 ~~~G~ey~~~~~l--~lRaGy~y~~~~~~~~~~~~~~p~~~~~~~s~G~~~-~~~~~~~idla~~y~~~~~~~~~~~~~~ 412 (439)
T 3bs0_A 336 ASIGTAYKYNNDL--TLRAGYSYAQQALDSELILPVIPAYLKRHVTFGGEY-DFDKDSRINLAISFGLRERVQTPSYLAG 412 (439)
T ss_dssp EEEEEEEECSSSE--EEEEEEEECC------CCCTTSCCCCSEEEEEEEEE-ESSSSEEEEEEEEEEEEEEEEC------
T ss_pred EEEEEEEEECCCE--EEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEE-ECCCCEEEEEEEEEECCCCCCCCCCCCC
T ss_conf 9987789957988--999999975677785420543557787899988999-8289829999999982430014677777
Q ss_pred -------CCCEEEEEEEEEEC
Q ss_conf -------66226999998539
Q gi|254780598|r 192 -------GFYNTISLGVGMKF 205 (205)
Q Consensus 192 -------~~~~~~~~G~~ykF 205 (205)
.....+.++.+|||
T Consensus 413 ~~~~~~~~~~~~~~l~~~~~F 433 (439)
T 3bs0_A 413 TEMLRQSHSQINAVVSYSKNF 433 (439)
T ss_dssp CCCCEEEEEEEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEEEEEEEEEE
T ss_conf 653043246799999999996
No 29
>1uyn_X NALP; autotransporter, translocator domain, membrane protein, outer membrane, beta-domain, beta-barrel; HET: CXE; 2.6A {Neisseria meningitidis} SCOP: f.4.5.1 PDB: 1uyo_X*
Probab=95.67 E-value=0.062 Score=26.57 Aligned_cols=71 Identities=18% Similarity=0.130 Sum_probs=31.9
Q ss_pred EEEEEEEEEEEEE--CCCE--EEEEEEEEEEEEEEE---CC---CCCCCCC--CCEEEEEEEEEEEECCCCC--EEEEEE
Q ss_conf 1489998975431--2767--789885447764443---13---4555677--5204799734661004886--799999
Q gi|254780598|r 116 IGGSLRIRGGYEV--SDSL--LLYATVGPDVAQKYE---TG---KAGEITP--IAIGGTAGVGVEVGGLSES--LVARLE 181 (205)
Q Consensus 116 ~~~~~~~r~Gy~~--~~~~--l~Y~~~G~a~~~~~~---~~---~~~~~~~--~~~g~~~G~Gvey~~it~~--~~~r~E 181 (205)
....+.+++||.+ .+++ .||+.+-|.+.+.+. ++ ....++. ......+|+-+++ .+..+ +..+++
T Consensus 153 ~~~~~~~~~gy~~~~~~~~~l~P~~gl~y~~~~~~~f~E~g~~~~l~~~~~~~~~~~~~~Glr~~~-~~~~~~~~~~~~~ 231 (308)
T 1uyn_X 153 TLMQLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWSGNSLTEGTLVGLAGLKLSQ-PLSDKAVLFATAG 231 (308)
T ss_dssp EEEEEEEEEEECCC---CCEEEEEEEEEEEEEEECCEEEESCTTCCEECCEEEEEEEEEEEEEEEE-ECSSSEEEEEEEE
T ss_pred CEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCEEEECCCCEEEECCCCCEEEEEEEEEEEEE-ECCCCEEEEEEEE
T ss_conf 169999998777882696389799998999972366045077400487167401668999999998-5477168988878
Q ss_pred EEEEECC
Q ss_conf 9997505
Q gi|254780598|r 182 YRASKYS 188 (205)
Q Consensus 182 Y~y~df~ 188 (205)
|+| +|+
T Consensus 232 ~~~-~~~ 237 (308)
T 1uyn_X 232 VER-DLN 237 (308)
T ss_dssp EEE-ESS
T ss_pred EEE-ECC
T ss_conf 997-527
No 30
>2fgq_X OMP32, outer membrane porin protein 32; malate, outer membrane protein; HET: BOG; 1.45A {Delftia acidovorans} SCOP: f.4.3.1 PDB: 2fgr_A 1e54_A
Probab=95.63 E-value=0.065 Score=26.48 Aligned_cols=137 Identities=9% Similarity=-0.024 Sum_probs=70.1
Q ss_pred CCCCCCCCCCCCCCCCCCC--CCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEEC
Q ss_conf 5421000122333344667--77776026899854640483799845101321555666621223214899989754312
Q gi|254780598|r 52 DFNGPYAGLSALYNGSFGE--EAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVS 129 (205)
Q Consensus 52 ~w~G~y~g~~~g~~~~~~~--~~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~ 129 (205)
.|.||-++........... ....+...++ ++.+..+.+-+++--+... .......... -..+.-+.|.++
T Consensus 144 ~~~Gf~~~a~y~~~~~~~~~~~~~~~~~~~~--~~~Y~~g~l~~~~~y~~~~----~~~~~~~~~~--~~~~~ga~y~~g 215 (332)
T 2fgq_X 144 NFGGFNAGFGYAFDEKQTIGTADSVGRYIGG--YVAYDNGPLSASLGLAQQK----TAVGGLATDR--DEITLGASYNFG 215 (332)
T ss_dssp CBTTEEEEEEEECCTTCCBTTBSSTTCEEEE--EEEEECSSEEEEEEEEEEE----EEETTEEEEE--EEEEEEEEEECS
T ss_pred CCCCEEEEEEEECCCCCCCCCCCCCCCCEEE--EEEEECCCEEEEEEEEECC----CCCCCCCCCC--CEEEEEEEEEEC
T ss_conf 6376778999941678764235553111000--4687068647995300014----4343444663--138997589816
Q ss_pred CCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf 7677898854477644431345556775204799734661004886799999999750565566226999998539
Q gi|254780598|r 130 DSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205)
Q Consensus 130 ~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205)
+ +- ..+.|...+.+.+.. . +.+... +.+|+.| .+++.+.+++.|.+.+-...+.+.+.+.+|+-|+|
T Consensus 216 ~-~~--l~~~y~~~~~~~~~~--~-~~~~~~--~~~~a~y-~~~~~~~~~~~y~~~~~~~~~~~~~~~~lg~~Y~l 282 (332)
T 2fgq_X 216 V-AK--LSGLLQQTKFKRDIG--G-DIKTNS--YMLGASA-PVGGVGEVKLQYALYDQKAIDSKAHQITLGYVHNL 282 (332)
T ss_dssp S-CE--EEEEEEEEEEEETTS--C-EEEEEE--EEEEEEE-EETTTEEEEEEEEEEEEGGGTEEEEEEEEEEEEES
T ss_pred C-EE--EEEEEEEEEECCCCC--C-CCEEEE--EEEEEEE-EECCCEEEEEEEEEECCCCCCCCCEEEEEEEEEEC
T ss_conf 4-99--999999988214767--7-420104--8983699-95360789999999846677887229999999952
No 31
>2qom_A Serine protease ESPP; outer membrane protein, beta-barrel, beta-domain, autotransporter, hydrolase, plasmid, secreted, transmembrane; 2.66A {Escherichia coli O157}
Probab=95.56 E-value=0.069 Score=26.34 Aligned_cols=111 Identities=12% Similarity=0.087 Sum_probs=47.7
Q ss_pred CCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCC-----CCCCCCEEEEEEEEEEEEE--CCCEE--EEEEEEEEEEE
Q ss_conf 760268998546404837998451013215556666-----2122321489998975431--27677--89885447764
Q gi|254780598|r 74 HNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADN-----IHSLHGIGGSLRIRGGYEV--SDSLL--LYATVGPDVAQ 144 (205)
Q Consensus 74 ~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~-----~~~~~~~~~~~~~r~Gy~~--~~~~l--~Y~~~G~a~~~ 144 (205)
+....++++.|+++.+.+ +-.-+-+.+.+.+.... ...-..+...+.+++||.+ .+++. ||+.+-+.+.+
T Consensus 78 ~~~~~g~Y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~i~P~~~l~y~~~~ 156 (285)
T 2qom_A 78 KSVGAGLYASAMFDSGAY-IDLIGKYVHHDNEYTATFAGLGTRDYSTHSWYAGAEAGYRYHVTEDAWIEPQAELVYGSVS 156 (285)
T ss_dssp EEEEEEEEEEEECTTSEE-EEEEEEEEEEEEEEEC---CCCCEEEEEEEEEEEEEEEECEESSSSEEEEEEEEEEEEEEE
T ss_pred EEEEEEEEEEEECCCCEE-EEEEEEEEEECCCEEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEEEE
T ss_conf 548899999997277357-8665688986042376116753225545300100167887771898078258999999986
Q ss_pred EEE---CCC---CC--CCCCCCEEEEEEEEEEEECCCCCE----EEEEEEEEE
Q ss_conf 443---134---55--567752047997346610048867----999999997
Q gi|254780598|r 145 KYE---TGK---AG--EITPIAIGGTAGVGVEVGGLSESL----VARLEYRAS 185 (205)
Q Consensus 145 ~~~---~~~---~~--~~~~~~~g~~~G~Gvey~~it~~~----~~r~EY~y~ 185 (205)
.+. +.. .. ..+....-..+|+-+++....+++ .++++|+|.
T Consensus 157 ~~~~~e~~~~~~l~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (285)
T 2qom_A 157 GKQFAWKDQGMHLSMKDKDYNPLIGRTGVDVGKSFSGKDWKVTARAGLGYQFD 209 (285)
T ss_dssp EEEC--------CCCEEEEEEEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEE
T ss_pred CCCEEECCCCCCEEEECCCCEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEE
T ss_conf 48501037432058814750268986411402689738807999999999998
No 32
>2wjr_A Probable N-acetylneuraminic acid outer membrane channel protein NANC; cell membrane, ION transport, transmembrane, porin, transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A*
Probab=95.55 E-value=0.069 Score=26.32 Aligned_cols=53 Identities=15% Similarity=0.195 Sum_probs=39.4
Q ss_pred CCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC-CC----CCEEEEEEEEEEC
Q ss_conf 556775204799734661004886799999999750565-56----6226999998539
Q gi|254780598|r 152 GEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKV-EG----FYNTISLGVGMKF 205 (205)
Q Consensus 152 ~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~-~~----~~~~~~~G~~ykF 205 (205)
...+.....|..-.-+.| .+.++|.=-+|+...+-..+ +. ....+||||.|.|
T Consensus 157 ~~~n~k~~~~ehn~~~~Y-k~~~~w~PYvE~g~v~~~~~~d~~~~~~q~r~RVGv~Y~F 214 (214)
T 2wjr_A 157 RYANHKKWATENAFVLQY-HMTPDITPYIEYDYLDRQGVYNGRDNLSENSYRIGVSFKL 214 (214)
T ss_dssp CCTTSSSEEEEEEEEEEE-CSSSSEEEEEEEEECCSCEEETTEEEECCEEEEEEEEECC
T ss_pred EECCCCCCEEEEEEEEEE-EECCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf 603887744799999999-9799852169999850550108874441327999989769
No 33
>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} SCOP: f.4.1.1 PDB: 1bxw_A* 1g90_A 2ge4_A
Probab=94.81 E-value=0.12 Score=25.10 Aligned_cols=87 Identities=16% Similarity=0.044 Sum_probs=40.2
Q ss_pred CCCEEEEEEEEEEECCCCC-CCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEE-EECCCCCCCCCCCEEEEEEE
Q ss_conf 4837998451013215556-666212232148999897543127677898854477644-43134555677520479973
Q gi|254780598|r 88 DSCIMYGVEGDVRYTVPVL-ADNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQK-YETGKAGEITPIAIGGTAGV 165 (205)
Q Consensus 88 ~~~~V~G~e~d~~~~~~~~-~~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~-~~~~~~~~~~~~~~g~~~G~ 165 (205)
.+.|.+|+.+-+...+... ........+......+++||.++|.+-+- +++.+... +.+......+-...++.+.+
T Consensus 4 ~~~wYvG~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~GY~f~~~~~~E--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (171)
T 1qjp_A 4 DNTWYTGAKLGWSQYHDTGFINNNGPTHENKLGAGAFGGYQVNPYVGFE--MGYDWLGRMPYKGSVENGAYKAQGVQLTA 81 (171)
T ss_dssp TTEEEEEEEEEEEC-------------CCCEEEEEEEEEEEEETTEEEE--EEEEEEEECCC-------CEEEEEEEEEE
T ss_pred CCCEEEEEEECCEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEE--EEEEECCCCCCCCCCCCCEEEEEEEEEEE
T ss_conf 7979999986019952654447776445787268999988636309999--99986586311044544406888888977
Q ss_pred EEEEECCCCCEE
Q ss_conf 466100488679
Q gi|254780598|r 166 GVEVGGLSESLV 177 (205)
Q Consensus 166 Gvey~~it~~~~ 177 (205)
...| .++++|.
T Consensus 82 ~~~~-~~~~~~~ 92 (171)
T 1qjp_A 82 KLGY-PITDDLD 92 (171)
T ss_dssp EEEE-ESSSSEE
T ss_pred EEEE-ECCCCEE
T ss_conf 8999-4278614
No 34
>1i78_A Protease VII; integral outer membrane protein, beta barrel, hydrolase; HET: BOG; 2.60A {Escherichia coli K12} SCOP: f.4.4.1
Probab=94.74 E-value=0.13 Score=25.00 Aligned_cols=27 Identities=11% Similarity=0.009 Sum_probs=15.9
Q ss_pred EEEEEEEEEEEECCCCCEEEEEEEEEEEC
Q ss_conf 04799734661004886799999999750
Q gi|254780598|r 159 IGGTAGVGVEVGGLSESLVARLEYRASKY 187 (205)
Q Consensus 159 ~g~~~G~Gvey~~it~~~~~r~EY~y~df 187 (205)
..+.+|+..|| .+ ++|.+.++-+|+.+
T Consensus 177 ~~pyiGL~g~y-r~-~~~e~~~~lk~s~w 203 (297)
T 1i78_A 177 KMPYIGLTGSY-RY-EDFELGGTFKYSGW 203 (297)
T ss_dssp EEEEEEEEEEE-EE-TTEEEEEEEEEEEE
T ss_pred EEEEEEEEEEE-EE-CCEEEEEEEEECEE
T ss_conf 55367577899-60-53798558852557
No 35
>2o4v_A Porin P; outer membrane, phosphate, transport, channel, membrane protein; HET: C8E; 1.94A {Pseudomonas aeruginosa PAO1}
Probab=94.17 E-value=0.17 Score=24.30 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=35.4
Q ss_pred EEEEEEEEEEECCCCCEEEEEEEEEEECCCC-----CCCCEEEEEEEEEEC
Q ss_conf 4799734661004886799999999750565-----566226999998539
Q gi|254780598|r 160 GGTAGVGVEVGGLSESLVARLEYRASKYSKV-----EGFYNTISLGVGMKF 205 (205)
Q Consensus 160 g~~~G~Gvey~~it~~~~~r~EY~y~df~~~-----~~~~~~~~~G~~ykF 205 (205)
.-.+.+|+.| .+++|+.++++|.|++..+. +-+.+.+++.+-|+|
T Consensus 362 ~~~~t~Glny-~~~~~~kl~~~Y~~~~~~~~~~~~~~~~~~~~~~r~Q~~F 411 (411)
T 2o4v_A 362 GKTHTLGVNW-YANEAVKVSANYVKAKTDKISNANGDDSGDGLVMRLQYVF 411 (411)
T ss_dssp EEEEEEEEEE-ECSSSEEEEEEEEEEEEESBCCTTCCCEEEEEEEEEEEEC
T ss_pred EEEEEEEEEE-EECCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf 6899999999-9838999999999963665666688887668999986789
No 36
>3jty_A BENF-like porin; PFL_1329, benzoate transporter, efflux pump, structural genomics, PSI-2, protein structure initiative; HET: LDA; 2.58A {Pseudomonas fluorescens pf-5}
Probab=89.80 E-value=0.64 Score=21.36 Aligned_cols=46 Identities=7% Similarity=-0.015 Sum_probs=34.1
Q ss_pred EEEEEEEEEEEECCC----CCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf 047997346610048----86799999999750565566226999998539
Q gi|254780598|r 159 IGGTAGVGVEVGGLS----ESLVARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205)
Q Consensus 159 ~g~~~G~Gvey~~it----~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205)
..+..-+.+.| .+. +++++|+.|-+.+......+.+.+|+=+.|+|
T Consensus 342 ~~~e~~~~~~Y-~~~~G~lKglsl~~~ya~~~~d~~~~d~~~~Rl~~~Y~F 391 (402)
T 3jty_A 342 KEWGRESEVAY-TVQSGTLKNLNLKWRNSTMRRDFSNNEFDENRLIISYPL 391 (402)
T ss_dssp EEEEEEEEEEE-ECCSSSSCSCEEEEEEEEEEESSCSCCEEEEEEEEEEEE
T ss_pred CEEEEEEEEEE-EECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEEEEE
T ss_conf 43799999999-856876688489999999965778888527999999493
No 37
>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound tetraheme cytochrome C subunit; electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A*
Probab=84.74 E-value=0.21 Score=23.86 Aligned_cols=25 Identities=36% Similarity=0.274 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9443789999999998410000246
Q gi|254780598|r 1 MQKLFLAVGVSSLALASFCSAQAAD 25 (205)
Q Consensus 1 Mkk~~la~av~~lal~~~~~A~Aad 25 (205)
|||+++++++.+++++...++.+++
T Consensus 1 mkk~l~~~~~~~~~~~~~~p~~~~~ 25 (130)
T 2a3m_A 1 MRKSLFAVMVLALVAAFALPVIAAE 25 (130)
T ss_dssp -----------------------CC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9049999999999999998887633
No 38
>2p3y_A Hypothetical protein VPA0735; structural genomics, PSI-2, protein structure initiative; 1.80A {Vibrio parahaemolyticus rimd 2210633} SCOP: e.65.1.1
Probab=76.96 E-value=0.4 Score=22.39 Aligned_cols=25 Identities=40% Similarity=0.482 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 944378999999999841000024665
Q gi|254780598|r 1 MQKLFLAVGVSSLALASFCSAQAADPV 27 (205)
Q Consensus 1 Mkk~~la~av~~lal~~~~~A~Aad~~ 27 (205)
|||.++++++++++++++ ++|.+.+
T Consensus 1 mkk~~l~~a~~~~~ls~~--~~a~~~~ 25 (491)
T 2p3y_A 1 MKKRILAVAVTSMLLSAS--VFAQETV 25 (491)
T ss_dssp -----------------------CEEE
T ss_pred CCHHHHHHHHHHHHHHHH--HCCCCCC
T ss_conf 917899999999975223--0145654
No 39
>2erv_A Hypothetical protein PAER03002360; beta barrel, outer membrane, enzyme, hydrolase, lipopolysaccharide, membrane protein; HET: CXE; 2.00A {Pseudomonas aeruginosa}
Probab=71.85 E-value=3.5 Score=17.56 Aligned_cols=124 Identities=17% Similarity=0.027 Sum_probs=54.5
Q ss_pred CCCCCEEEEEEEEEEE-----CCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEE-CCCEEEEEEEEEEEEEE
Q ss_conf 7776026899854640-----48379984510132155566662122321489998975431-27677898854477644
Q gi|254780598|r 72 AHHNAGGSIFAGYNVE-----DSCIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEV-SDSLLLYATVGPDVAQK 145 (205)
Q Consensus 72 ~~~~~~~G~~~GYn~q-----~~~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~-~~~~l~Y~~~G~a~~~~ 145 (205)
+++...+.+.+.++|. ...+-+..+.+....--...... ...+...+.+-+-|.+ +.++-+|..+|....=.
T Consensus 11 ~~~t~~~~l~~~~d~~~~w~~~~~~~l~~~~e~~~~~w~~~~~~--~~~~~lg~~Pv~r~~~~~~~~~~f~E~GiG~~~~ 88 (150)
T 2erv_A 11 GQSGMTYRLGLSWDWDKSWWQTSTGRLTGYWDAGYTYWEGGDEG--AGKHSLSFAPVFVYEFAGDSIKPFIEAGIGVAAF 88 (150)
T ss_dssp TTSCEEEEEEEEEECCCCEEEETTEEEEEEEEEEEEEECCCSSC--SSEEEEEEEEEEEEEECCSSEEEEEEEEEEEEEE
T ss_pred CCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCCC--CCCCEEEEEEEEEEEECCCCCCEEEEEEECEEEE
T ss_conf 88862899998928880011268842899998888996159977--8721687777999984799716799951243987
Q ss_pred EECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC-----CCCCEEEEEE
Q ss_conf 431345556775204799734661004886799999999750565-----5662269999
Q gi|254780598|r 146 YETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKV-----EGFYNTISLG 200 (205)
Q Consensus 146 ~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~-----~~~~~~~~~G 200 (205)
..+.....+-.+..-+.-.+|+-| .+.+++.+ +||+..+++- .-.+|++.+-
T Consensus 89 s~~~~~~~~lg~~~qF~~~lg~g~-~~~~~~~l--~~~~~H~SNagi~~~NpG~n~~~l~ 145 (150)
T 2erv_A 89 SGTRVGDQNLGSSLNFEDRIGAGL-KFANGQSV--GVRAIHYSNAGLKQPNDGIESYSLF 145 (150)
T ss_dssp SSSEETTEECSCSEEEEEEEEEEE-EETTSCEE--EEEEEEEECTTSSTTCCCEEEEEEE
T ss_pred ECCCCCCCCCCCEEEEEEEEEEEE-EECCCCEE--EEEEEEEECCCCCCCCCCCEEEEEE
T ss_conf 043117997675398654588999-96799789--9999986058889998991068899
No 40
>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate esterase family 2, hydrolase; 2.00A {Cellvibrio japonicus}
Probab=64.49 E-value=1.5 Score=19.42 Aligned_cols=62 Identities=19% Similarity=0.116 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 944378999999999841000024665435666665556345544444411542100012233
Q gi|254780598|r 1 MQKLFLAVGVSSLALASFCSAQAADPVRRAHHGGRGVVPTIATNRYVPIRHDFNGPYAGLSAL 63 (205)
Q Consensus 1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~~~~~~~~~~~~~~~~~~~~~~~w~G~y~g~~~g 63 (205)
||.+.|+.++++++++...+|-.+..+.+........ ...+........++|.|.++.....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~-~~~~~~~~~~~~~~w~G~~i~~~f~ 62 (366)
T 2w9x_A 1 MKPHALIGLLAGMLLSSSLYAADSTKPLPLHIGGRVL-VESPANQPVSYTYSWPAVYFETAFK 62 (366)
T ss_dssp --------------------------CCCCEEESCCE-EECC--CCCEEEECSTTCEEEECC-
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCEEE-EECCCCCCCCCEECCCEEEEEEEEE
T ss_conf 9626799999888775015433358987500754797-5236889874135251567999998
No 41
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=63.59 E-value=1.1 Score=20.07 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 944378999999999841000024665
Q gi|254780598|r 1 MQKLFLAVGVSSLALASFCSAQAADPV 27 (205)
Q Consensus 1 Mkk~~la~av~~lal~~~~~A~Aad~~ 27 (205)
|||+++++.+++..+ +..+.|+|+.
T Consensus 1 Mk~~~~~~~~~l~~~--~~~a~a~d~~ 25 (103)
T 2zzs_A 1 MKRVMIGAVAALTML--SGQALAGDAA 25 (103)
T ss_dssp -----------------------CCHH
T ss_pred CHHHHHHHHHHHHHH--HHHHCCCCHH
T ss_conf 927999999999998--5865336998
No 42
>1y0g_A Protein YCEI; lipid binding protein, lipocalin, cofactor, coenzyme, dehydrogenase, hydrolase, predicted, structural genomics; HET: 8PP; 2.20A {Escherichia coli} SCOP: b.61.6.1
Probab=62.59 E-value=1.3 Score=19.77 Aligned_cols=24 Identities=42% Similarity=0.495 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9443789999999998410000246
Q gi|254780598|r 1 MQKLFLAVGVSSLALASFCSAQAAD 25 (205)
Q Consensus 1 Mkk~~la~av~~lal~~~~~A~Aad 25 (205)
|||+++.+.++++++++ ++|+|++
T Consensus 1 Mkk~~~~l~~~~l~~~~-~~a~a~~ 24 (191)
T 1y0g_A 1 MKKSLLGLTFASLMFSA-GSAVAAD 24 (191)
T ss_dssp -----------------------CE
T ss_pred CCHHHHHHHHHHHHHHH-CCCCCCC
T ss_conf 93369999999999760-2203653
No 43
>2odj_A Porin D; outer membrane protein, beta-barrel, amino acid transport; HET: C8E; 2.90A {Pseudomonas aeruginosa PAO1}
Probab=51.15 E-value=8.9 Score=15.49 Aligned_cols=47 Identities=15% Similarity=0.091 Sum_probs=34.0
Q ss_pred CEEEEEEEEEEEECCC----CCEEEEEEEEEEEC--CCCCCCCEEEEEEEEEEC
Q ss_conf 2047997346610048----86799999999750--565566226999998539
Q gi|254780598|r 158 AIGGTAGVGVEVGGLS----ESLVARLEYRASKY--SKVEGFYNTISLGVGMKF 205 (205)
Q Consensus 158 ~~g~~~G~Gvey~~it----~~~~~r~EY~y~df--~~~~~~~~~~~~G~~ykF 205 (205)
..++-+.+=+.| .+. +++++|+.|-+.+- ...+.+.+.+|+=+.|.|
T Consensus 365 ~~~~E~d~~~~Y-~~~~G~lKglsl~~~ya~~~~d~~~~~~d~~~~Rl~~~Y~F 417 (428)
T 2odj_A 365 GKHHETNLEAKY-VVQSGPAKDLSFRIRQAWHRANADQGEGDQNEFRLIVDYPL 417 (428)
T ss_dssp EEEEEEEEEEEE-ECCSSTTTTCEEEEEEEEEEECTTTSSCSBEEEEEEEEEEE
T ss_pred CCEEEEEEEEEE-EECCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEEEEEE
T ss_conf 732688779999-96888767728999989995576667898648999999390
No 44
>1af6_A Maltoporin, LAMB; membrane protein, specific porin, beta barrel, sugar transport, sucrose; HET: GLC FRU; 2.40A {Escherichia coli} SCOP: f.4.3.2 PDB: 1mal_A 1mpm_A* 1mpn_A* 1mpo_A* 1mpq_A* 2mpr_A* 1mpr_A*
Probab=48.27 E-value=10 Score=15.24 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=41.0
Q ss_pred EEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEC
Q ss_conf 48999897543127677898854477644431345556775204799734661004886799999999750
Q gi|254780598|r 117 GGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKY 187 (205)
Q Consensus 117 ~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df 187 (205)
..++.+|+-|.+++++-+-..+||...+.+......+..+.-..+++-+|-++ . .+=.+|+=+.|.+.
T Consensus 305 ~~s~~vRp~y~~~~nf~~~~E~Gy~~~~~~~~g~~~~~~K~TlApt~~~g~~f-~--sRPeiR~faTy~~w 372 (421)
T 1af6_A 305 WWTVGIRPMYKWTPIMSTVMEIGYDNVESQRTGDKNNQYKITLAQQWQAGDSI-W--SRPAIRVFATYAKW 372 (421)
T ss_dssp EEEEEEEEEEESSSSEEEEEEEEEEEEEETTTCCEEEEEEEEEEEEEESSSST-T--CSCEEEEEEEEEEE
T ss_pred EEEEEEEEEEEECCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCC-C--CCCEEEEEEEEEEC
T ss_conf 99998788889878326999988988853788776744799998604207987-7--79679999999832
No 45
>2f2f_C CDT C, cytolethal distending toxin C; actinobacillus actinomycetemcomitans, oligomerization, stability and toxic activity; 2.40A {Aggregatibacter actinomycetemcomitans} SCOP: b.42.2.1
Probab=44.82 E-value=5.4 Score=16.60 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 944378999999999841000024665
Q gi|254780598|r 1 MQKLFLAVGVSSLALASFCSAQAADPV 27 (205)
Q Consensus 1 Mkk~~la~av~~lal~~~~~A~Aad~~ 27 (205)
|||+++....+.++.+...+-.+.++.
T Consensus 1 mkK~~i~f~~~l~~~~~s~~~~~~~P~ 27 (186)
T 2f2f_C 1 MKKYLLSFLLSMILTLTSHAESNPDPT 27 (186)
T ss_dssp ------------------------CCC
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 932489999999975114554688977
No 46
>2vdf_A OPCA, outer membrane protein; invasin, adhesin, beta barrel; 1.95A {Neisseria meningitidis} SCOP: f.4.4.2 PDB: 1k24_A
Probab=44.44 E-value=12 Score=14.92 Aligned_cols=127 Identities=13% Similarity=0.132 Sum_probs=56.4
Q ss_pred EEEEEEEEEEC---CC--EEEEEEEEEEECCCCCCCC----CCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEE-----E
Q ss_conf 68998546404---83--7998451013215556666----212232148999897543127677898854477-----6
Q gi|254780598|r 78 GSIFAGYNVED---SC--IMYGVEGDVRYTVPVLADN----IHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDV-----A 143 (205)
Q Consensus 78 ~G~~~GYn~q~---~~--~V~G~e~d~~~~~~~~~~~----~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~-----~ 143 (205)
.-+++||-+.. ++ +--|+...+...-...+.. ....+-|..-+.+-+-.++.+++.+=.+.-|-+ .
T Consensus 90 ~dvyagY~yT~pisd~~~lr~GlGLGYr~lkD~lss~~~~~ydr~q~~Yl~i~a~v~~~L~~gw~l~p~iEyn~~L~Gkq 169 (253)
T 2vdf_A 90 IDLYTGYTYTQTLSDSLNFRVGAGLGFESSKDSIKTTKHTLHSSRQSWLAKVHADLLSQLGNGWYINPWSEVKFDLNSRY 169 (253)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEC------CEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCCCCCEEEECCCCEEEEEECCHHCCCCCCCCCCEEEEEECCEEEEEECCCCCEEEEEEEEEEEECCCE
T ss_conf 67776678716666551056213412565410100137776672016896314589984489837610699998733516
Q ss_pred EEEEC--CCCCCCCCCCEEE--EEEEEEEEECCCCCEEEEEE--EEEEECCCCC-----------------CCCEEEEEE
Q ss_conf 44431--3455567752047--99734661004886799999--9997505655-----------------662269999
Q gi|254780598|r 144 QKYET--GKAGEITPIAIGG--TAGVGVEVGGLSESLVARLE--YRASKYSKVE-----------------GFYNTISLG 200 (205)
Q Consensus 144 ~~~~~--~~~~~~~~~~~g~--~~G~Gvey~~it~~~~~r~E--Y~y~df~~~~-----------------~~~~~~~~G 200 (205)
+...+ ....++.+...|| -+++-+.. .+++++.+-.| |||-++.+.+ ...+.+-+.
T Consensus 170 ~Sy~s~~~~~~d~n~q~~G~G~~lsv~isK-ql~d~~~I~~ePfyRyW~Ik~S~~~~v~~~~~~~~~~EPkNtt~E~Glr 248 (253)
T 2vdf_A 170 KLNTGVTNLKKDINQKTNGWGFGLGANIGK-KLGESASIEAGPFYKQRTYKESGEFSVTTKSGDVSLTIPKTSIREYGLR 248 (253)
T ss_dssp EECC-------CEEEECCEEEEEEEEEEEE-ECC--CEEEEEEEEEEEEECCCCCBCC-------CBCCCCEEEEEEEEE
T ss_pred EEEECCCCCCCCHHHHCCCCEEEEEEEHHH-CCCCCCCEEEEEEEEEEEECCCCCEEEECCCCCEEEECCCCCCEEEEEE
T ss_conf 771112356675001036840899886011-2364121344102676442267642786157622345578732031188
Q ss_pred EEEEC
Q ss_conf 98539
Q gi|254780598|r 201 VGMKF 205 (205)
Q Consensus 201 ~~ykF 205 (205)
++++|
T Consensus 249 v~~~F 253 (253)
T 2vdf_A 249 VGIKF 253 (253)
T ss_dssp EEEEC
T ss_pred EEEEC
T ss_conf 99709
No 47
>2qtk_A Probable porin; outer membrane protein, beta barrel, vanillate transport; HET: C8E; 2.80A {Pseudomonas aeruginosa}
Probab=41.90 E-value=13 Score=14.70 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=23.8
Q ss_pred EEEEEEEEEECCC----CCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf 7997346610048----86799999999750565566226999998539
Q gi|254780598|r 161 GTAGVGVEVGGLS----ESLVARLEYRASKYSKVEGFYNTISLGVGMKF 205 (205)
Q Consensus 161 ~~~G~Gvey~~it----~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF 205 (205)
+-+.+-+.| .+. +++++|+.|-..+. +.+.+.+.+|+=+.|.|
T Consensus 342 ~E~d~~~~Y-~~~~G~lKgl~~~~~ya~~~~-~~~~d~~~~Rl~~~Y~~ 388 (390)
T 2qtk_A 342 WERDVELGY-TVQSGPLARLNVRLNHASNRR-SFNSDFDQTRLVVSYPL 388 (390)
T ss_dssp EEEEEEEEE-ECCSSTTTTCEEEEEEEEEEE-TTSCCEEEEEEEEEEEE
T ss_pred EEEEEEEEE-EECCCCCCCCEEEEEEEEECC-CCCCCCEEEEEEEEEEE
T ss_conf 799889999-988865588689999878506-78898427999999671
No 48
>2qn4_A RASI, alpha-amylase/subtilisin inhibitor; amylase inhibitor, alpha- amylase inhibitor, protease inhibitor, serine protease inhibitor; 1.80A {Oryza sativa subsp}
Probab=36.67 E-value=8 Score=15.72 Aligned_cols=30 Identities=33% Similarity=0.332 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 944378999999999841000024665435
Q gi|254780598|r 1 MQKLFLAVGVSSLALASFCSAQAADPVRRA 30 (205)
Q Consensus 1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~ 30 (205)
|+++.+.+..-++++.+..++.+++++...
T Consensus 1 m~~l~l~~~ll~~~~~s~~~~~~~~pVlD~ 30 (200)
T 2qn4_A 1 MVSLRLPLILLSLLAISFSCSAAPPPVYDT 30 (200)
T ss_dssp ----------------------CCCBCBCT
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCEECC
T ss_conf 900689999999999872010489953959
No 49
>1xt8_A Putative amino-acid transporter periplasmic solute-binding protein; ABC transport, cysteine uptake, spine, structural genomics; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=35.63 E-value=6.8 Score=16.09 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=11.1
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 94437899999999984
Q gi|254780598|r 1 MQKLFLAVGVSSLALAS 17 (205)
Q Consensus 1 Mkk~~la~av~~lal~~ 17 (205)
||+++.+.+++.+++++
T Consensus 1 ~k~~~~~~~~~l~l~~~ 17 (292)
T 1xt8_A 1 MKYLLPTAAAGLLLLAA 17 (292)
T ss_dssp -----------------
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 94189999999999999
No 50
>2guf_A Vitamin B12 transporter BTUB; beta barrel, cubic mesophase, cobalamin, colicin, transport protein; HET: MPG; 1.95A {Escherichia coli} SCOP: f.4.3.3 PDB: 1nqg_A* 1nqh_A* 1ujw_A* 1nqe_A* 2ysu_A 3m8b_A* 3m8d_A* 2gsk_A* 1nqf_A*
Probab=33.24 E-value=18 Score=13.95 Aligned_cols=43 Identities=12% Similarity=0.021 Sum_probs=22.9
Q ss_pred EEEEEEEEECCCCCEEEEEEEE------EEECCCCCCCCEEEEEEEEEEC
Q ss_conf 9973466100488679999999------9750565566226999998539
Q gi|254780598|r 162 TAGVGVEVGGLSESLVARLEYR------ASKYSKVEGFYNTISLGVGMKF 205 (205)
Q Consensus 162 ~~G~Gvey~~it~~~~~r~EY~------y~df~~~~~~~~~~~~G~~ykF 205 (205)
++-+++.| .++++|.+++.-+ |.........--++.+|+.|||
T Consensus 546 ~~dl~~~y-~~~~~~~l~~~v~Nl~d~~y~~~~~~~~~gR~~~l~~~y~F 594 (594)
T 2guf_A 546 LWDLAVAY-PVTSHLTVRGKIANLFDKDYETVYGYQTAGREYTLSGSYTF 594 (594)
T ss_dssp EEEEEEEE-ESSSSEEEEEEEESTTCCCC--------CCCEEEEEEEEEC
T ss_pred EEEEEEEE-EECCCEEEEEEEEECCCCCEECCCCCCCCCEEEEEEEEEEC
T ss_conf 99999999-92898799999992899951110686789989999999989
No 51
>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides fragilis YCH46}
Probab=32.15 E-value=10 Score=15.15 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9443789999999998410000246
Q gi|254780598|r 1 MQKLFLAVGVSSLALASFCSAQAAD 25 (205)
Q Consensus 1 Mkk~~la~av~~lal~~~~~A~Aad 25 (205)
||+++..+++++.+++....|+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (491)
T 2qzu_A 1 MKNIIPQALLTMPILSTGLQAQEKQ 25 (491)
T ss_dssp -----------------CCSCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9648999999999998776540118
No 52
>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter capsulatus SB1003} SCOP: a.3.1.1
Probab=31.33 E-value=7.9 Score=15.77 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 944378999999999841000024665
Q gi|254780598|r 1 MQKLFLAVGVSSLALASFCSAQAADPV 27 (205)
Q Consensus 1 Mkk~~la~av~~lal~~~~~A~Aad~~ 27 (205)
||..++++.+..++++ .+++|+|+.
T Consensus 1 m~~~~~~~~~~~~~~~--~~~~agD~~ 25 (137)
T 1c2n_A 1 MKISLTAATVAALVLA--APAFAGDAA 25 (137)
T ss_dssp -----------------------CCHH
T ss_pred CHHHHHHHHHHHHHHC--CCCCCCCHH
T ss_conf 9177999999999863--641236988
No 53
>1jb0_F Photosystem 1 reaction centre subunit III; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.16.1
Probab=27.33 E-value=11 Score=15.02 Aligned_cols=23 Identities=26% Similarity=0.147 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 94437899999999984100002
Q gi|254780598|r 1 MQKLFLAVGVSSLALASFCSAQA 23 (205)
Q Consensus 1 Mkk~~la~av~~lal~~~~~A~A 23 (205)
||+++..+.+..+.++.+..|.|
T Consensus 1 Mrr~~a~~l~~~l~~~~~p~A~A 23 (164)
T 1jb0_F 1 MRRFLALLLVLTLWLGFTPLASA 23 (164)
T ss_dssp -----------------------
T ss_pred CHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 91799999999999838962011
No 54
>1a0s_P Sucrose-specific porin; outer membrane protein; 2.40A {Salmonella typhimurium} SCOP: f.4.3.2 PDB: 1a0t_P* 1oh2_P* 1oh2_Q*
Probab=26.54 E-value=24 Score=13.32 Aligned_cols=123 Identities=10% Similarity=-0.131 Sum_probs=62.2
Q ss_pred CEEEEEEEEEEEC-CCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECCCCCCC
Q ss_conf 0268998546404-837998451013215556666212232148999897543127677898854477644431345556
Q gi|254780598|r 76 AGGSIFAGYNVED-SCIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETGKAGEI 154 (205)
Q Consensus 76 ~~~G~~~GYn~q~-~~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~~~~~~ 154 (205)
...-+.-=-.+++ ++|.+.-.+-+.+.+....+ ..+..| .++.+|+-|.+++.+-+-..+||.+.+.+.+......
T Consensus 265 ~s~Rl~~~G~~~~~~~~~~~~~~~y~~~~d~~~~--~~~~~~-~s~~vRP~y~~~~~~~~~~E~gy~~~~~~~~~~~~~~ 341 (413)
T 1a0s_P 265 DTWRIASYGTTPLSENWSVAPAMLAQRSKDRYAD--GDSYQW-ATFNLRLIQAINQNFALAYEGSYQYMDLKPEGYNDRQ 341 (413)
T ss_dssp EEEEEEEEEEEESSSSEEEEEEEEEEEEESSSST--TCEEEE-EEEEEEEEEECSSSEEEEEEEEEEEEEEECTTGGGCC
T ss_pred EEEEEEEECCEECCCCEEEEEEEEEEEECCCCCC--CCCEEE-EEEEEEEEEEECCCEEEEEEEEEEEECCCCCCCCCCC
T ss_conf 2899988663533687677546789971166778--984389-9999899899668678999988876303446754565
Q ss_pred CCCCEEEEEEEEEEEECCC------CCEEEEEEEEEEECCCC--------------CCCCEEEEEEEE
Q ss_conf 7752047997346610048------86799999999750565--------------566226999998
Q gi|254780598|r 155 TPIAIGGTAGVGVEVGGLS------ESLVARLEYRASKYSKV--------------EGFYNTISLGVG 202 (205)
Q Consensus 155 ~~~~~g~~~G~Gvey~~it------~~~~~r~EY~y~df~~~--------------~~~~~~~~~G~~ 202 (205)
......+.+-+--.. .+. .+=.+|+=+.|.+..+. ..+.+.+++|+-
T Consensus 342 ~~~~~~~K~TlA~~~-~~g~~~~fwsRPeiR~yaTY~~w~~~~~~~~~~~~~~~~~~~~~~~~~fGvQ 408 (413)
T 1a0s_P 342 AVNGSFYKLTFAPTF-KVGSIGDFFSRPEIRFYTSWMDWSKKLNNYASDDALGSDGFNSGGEWSFGVQ 408 (413)
T ss_dssp CEEEEEEEEEEEEEE-ESSCTTCTTCCCEEEEEEEEEEECGGGGGSCSSSSTTSTTCCSSCEEEEEEE
T ss_pred CCCCCEEEEEEEEEE-CCCCCCCCCCCCEEEEEEEEECCCHHHCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 667845799998640-3189787677978999999980430210233455545456688887899999
No 55
>2jrn_A CHAP domain protein; monomer, putative amidase, structural genomics, PSI-2, protein structure initiative; NMR {Staphylococcus saprophyticus} PDB: 2k3a_A
Probab=26.12 E-value=11 Score=15.02 Aligned_cols=11 Identities=36% Similarity=0.498 Sum_probs=8.1
Q ss_pred CHHHHHHHHHH
Q ss_conf 94437899999
Q gi|254780598|r 1 MQKLFLAVGVS 11 (205)
Q Consensus 1 Mkk~~la~av~ 11 (205)
|||++.++.++
T Consensus 1 mKK~i~~~~~~ 11 (163)
T 2jrn_A 1 MKKLVTATTLT 11 (163)
T ss_dssp CCCSSCSSTTT
T ss_pred CCCEEEEEHHH
T ss_conf 96089751146
No 56
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=25.25 E-value=12 Score=14.79 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHHHHH-CCCCCCCC
Q ss_conf 94437899999999984-10000246
Q gi|254780598|r 1 MQKLFLAVGVSSLALAS-FCSAQAAD 25 (205)
Q Consensus 1 Mkk~~la~av~~lal~~-~~~A~Aad 25 (205)
|||.++.+++.+|.+|+ ++++++++
T Consensus 3 ~~k~l~~~~~~~l~~~~~~~~~~~a~ 28 (259)
T 2v25_A 3 FRKSLLKLAVFALGACVAFSNANAAE 28 (259)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 37999999999999998723311132
No 57
>2jna_A Putative secreted protein; GFT-homodimer, PSI-2, alpha+beta, structural genomics, protein structure initiative; NMR {Salmonella typhimurium LT2} SCOP: d.230.6.1
Probab=24.63 E-value=0.78 Score=20.93 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 944378999999999841000024665435
Q gi|254780598|r 1 MQKLFLAVGVSSLALASFCSAQAADPVRRA 30 (205)
Q Consensus 1 Mkk~~la~av~~lal~~~~~A~Aad~~~~~ 30 (205)
|||.++++++ ++...+-.|+||+.+-..
T Consensus 1 MKk~~i~aa~--~l~~~Sf~a~AA~eit~~ 28 (104)
T 2jna_A 1 MKKRIIAAAL--LATVASFSTLAAEQVSKQ 28 (104)
T ss_dssp CCCCCCCCCC--CCCCCCCCCCSCCCCCHH
T ss_pred CCHHHHHHHH--HHHHHHHHHHHHHHHCHH
T ss_conf 9569999999--999987888888875999
No 58
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=23.87 E-value=19 Score=13.75 Aligned_cols=26 Identities=23% Similarity=0.160 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 44378999999999841000024665
Q gi|254780598|r 2 QKLFLAVGVSSLALASFCSAQAADPV 27 (205)
Q Consensus 2 kk~~la~av~~lal~~~~~A~Aad~~ 27 (205)
|.+.++++..++.......+.+++..
T Consensus 5 ~~~~~aia~~a~~a~~~~g~~~~~~~ 30 (132)
T 3c75_A 5 KTLRPAIAAIALFAIGATGAWAQDKI 30 (132)
T ss_dssp ----------------------CCSE
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 35999999999998524454556643
No 59
>3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=23.45 E-value=14 Score=14.48 Aligned_cols=20 Identities=20% Similarity=0.084 Sum_probs=11.2
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 944378999999999841000024
Q gi|254780598|r 1 MQKLFLAVGVSSLALASFCSAQAA 24 (205)
Q Consensus 1 Mkk~~la~av~~lal~~~~~A~Aa 24 (205)
||+.++.+++ +|++++|.|+
T Consensus 1 ~~~~l~l~l~----~~~a~~ala~ 20 (355)
T 3c9h_A 1 MRICLFLCLC----LCMASPALAQ 20 (355)
T ss_dssp -------------------CEEEE
T ss_pred CCHHHHHHHH----HHHHHHHHHH
T ss_conf 9079999999----9999999988
No 60
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=23.34 E-value=17 Score=14.09 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 944378999999999841000024665
Q gi|254780598|r 1 MQKLFLAVGVSSLALASFCSAQAADPV 27 (205)
Q Consensus 1 Mkk~~la~av~~lal~~~~~A~Aad~~ 27 (205)
||++++++++ ++++...|++..+.
T Consensus 1 mr~~~~~~~~---~~~~~~~a~~~~~t 24 (741)
T 2ecf_A 1 MRHLFASLAF---MLATSTVAHAEKLT 24 (741)
T ss_dssp ------------------------CCC
T ss_pred CHHHHHHHHH---HHHHHHHHCCCCCC
T ss_conf 9589999999---99766764357789
Done!