HHSEARCH alignment of GI: 254780598 and SCOP domain: d1p4ta_

Alignment
>d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria meningitidis [TaxId: 487]}
Probab=99.92  E-value=4e-24  Score=139.36  Aligned_cols=147  Identities=16%  Similarity=0.118  Sum_probs=112.0

Q ss_pred             CCCCCCCCCCCCCCCCCCC-CCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCC
Q ss_conf             4210001223333446677-777602689985464048379984510132155566662122321489998975431276
Q gi|254780598|r   53 FNGPYAGLSALYNGSFGEE-AHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSDS  131 (205)
Q Consensus        53 w~G~y~g~~~g~~~~~~~~-~~~~~~~G~~~GYn~q~~~~V~G~e~d~~~~~~~~~~~~~~~~~~~~~~~~r~Gy~~~~~  131 (205)
                      -+|||++.++|+.....+. +.+++.+++.+||+|+  +|.+  |+++.+......... ....+...+.++..++..++
T Consensus         3 ~sGfYvg~~~g~~~~~~~~~~~~g~~~~~~~GY~f~--~~~~--e~~y~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~   77 (155)
T d1p4ta_           3 ASGFYVQADAAHAKASSSLGSAKGFSPRISAGYRIN--DLRF--AVDYTRYKNYKAPST-DFKLYSIGASAIYDFDTQSP   77 (155)
T ss_dssp             CEEEEEEEEEEEEEEECSSCEEEEECCEEEEEEEET--TEEE--EEEEEEEEESSCCSS-CCEEEEEEEEEEEECCCSSS
T ss_pred             CCCEEEEEEEEEEECCCCCCCCCCEEEEEEEEEECC--CEEE--EEEEEECCCCCCCCC-CCCEEEEEEEEEEEECCCCC
T ss_conf             876089888278803167667886507999999818--9999--999997145344575-20002503899998438884


Q ss_pred             EEEEEEEEEEEEEEEECCCC-CCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC----CCCEEEEEEEEEEC
Q ss_conf             77898854477644431345-5567752047997346610048867999999997505655----66226999998539
Q gi|254780598|r  132 LLLYATVGPDVAQKYETGKA-GEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVE----GFYNTISLGVGMKF  205 (205)
Q Consensus       132 ~l~Y~~~G~a~~~~~~~~~~-~~~~~~~~g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~----~~~~~~~~G~~ykF  205 (205)
                      +.||+++|+++++.+.+... ...+++..+|.+|+|+|| +|+|||++++||||+++++.+    .+.|.+++|+.|||
T Consensus        78 ~~py~~~G~g~~~~~~~~~~~~~~~~~~~~~~~g~G~~y-~lt~n~~~~~eyry~~~~~~~~~~~~~~~~~~~Gl~Y~F  155 (155)
T d1p4ta_          78 VKPYLGARLSLNRASVDLGGSDSFSQTSIGLGVLTGVSY-AVTPNVDLDAGYRYNYIGKVNTVKNVRSGELSAGVRVKF  155 (155)
T ss_dssp             EEEEEEEEEEEEEEEEEETTEEEECCCEEEEEEEEEEEE-EEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEC
T ss_pred             EEEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEE-EECCCEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEC
T ss_conf             528999866789845213552102676362589989999-935998999999999756876675311049999999989


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: OMPA-like
family: Outer membrane protein
domain: Outer membrane protein NspA
species: Neisseria meningitidis [TaxId: 487]