HHSEARCH alignment of GI: 254780598 and SCOP domain: d1uynx_

Alignment
>d1uynx_ f.4.5.1 (X:) Translocator domain of NalP {Neisseria meningitidis [TaxId: 487]}
Probab=99.00  E-value=8.7e-09  Score=60.57  Aligned_cols=148  Identities=20%  Similarity=0.133  Sum_probs=91.6

Q ss_pred             CCCCCCCCCCCCCCCCC--------------CCCCCEEEEEEEEEEEC-CCEEEEEEEEEEECCCCCCC--------CCC
Q ss_conf             10001223333446677--------------77760268998546404-83799845101321555666--------621
Q gi|254780598|r   55 GPYAGLSALYNGSFGEE--------------AHHNAGGSIFAGYNVED-SCIMYGVEGDVRYTVPVLAD--------NIH  111 (205)
Q Consensus        55 G~y~g~~~g~~~~~~~~--------------~~~~~~~G~~~GYn~q~-~~~V~G~e~d~~~~~~~~~~--------~~~  111 (205)
                      +.|+-+.+++++...+.              +.......+.+||+|+. +.+.+-..+.+.|...+.+.        ...
T Consensus       111 ~~y~~~~l~~~~~~~~~~R~~~~~~~~~g~~~~~~~~~~~e~Gy~~~~~~~~~l~P~~~l~y~~~~~d~y~E~g~~~~l~  190 (299)
T d1uynx_         111 IGYLKGLFSYGRYKNSISRSTGADEHAEGSVNGTLMQLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWS  190 (299)
T ss_dssp             TEEEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEECCC---CCEEEEEEEEEEEEEEECCEEEESCTTCCE
T ss_pred             CEEEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEECCCEEEECCCCCEE
T ss_conf             73578887268973225773056641035673118999999867785189669999877677788547707766753111


Q ss_pred             CC----CCEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEECC--------------CCCCCCCCCEEEEEEEEEEEECCC
Q ss_conf             22----321489998975431276778988544776444313--------------455567752047997346610048
Q gi|254780598|r  112 SL----HGIGGSLRIRGGYEVSDSLLLYATVGPDVAQKYETG--------------KAGEITPIAIGGTAGVGVEVGGLS  173 (205)
Q Consensus       112 ~~----~~~~~~~~~r~Gy~~~~~~l~Y~~~G~a~~~~~~~~--------------~~~~~~~~~~g~~~G~Gvey~~it  173 (205)
                      ..    ......+..|+.+.++..+-|++++++..--.+.+.              .....+..+..+.+|+|+++ .++
T Consensus       191 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~-~~~  269 (299)
T d1uynx_         191 GNSLTEGTLVGLAGLKLSQPLSDKAVLFATAGVERDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGLGADV-EFG  269 (299)
T ss_dssp             ECCEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEESSCCCCCCCC-----------------CCEEEEEEEEEEE-EEE
T ss_pred             ECCCCEEEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEEEEE-EEC
T ss_conf             0265326888974479986337723788999999970699820589986168750367235788842999985999-988


Q ss_pred             CCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             86799999999750565566226999998539
Q gi|254780598|r  174 ESLVARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       174 ~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      ++|++.++|++.. + .+.+.|.+++||.|||
T Consensus       270 ~~~~l~~~y~~~~-~-~~~~~~~~~~gl~y~F  299 (299)
T d1uynx_         270 NGWNGLARYSYAG-S-KQYGNHSGRVGVGYRF  299 (299)
T ss_dssp             TTEEEEEEEEEEE-E-TTEEEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEE-C-CCCCEEEEEEEEEEEC
T ss_conf             9999999999996-6-7851179999999989


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: Autotransporter
family: Autotransporter
domain: Translocator domain of NalP
species: Neisseria meningitidis [TaxId: 487]