HHSEARCH alignment of GI: 254780598 and SCOP domain: d2fgqx1

Alignment

Probab=97.60  E-value=0.001  Score=34.53  Aligned_cols=45  Identities=13%  Similarity=0.087  Sum_probs=33.7

Q ss_pred             EEEEEEEEEEECCCCCEEEEEEEEEEECCCCC-----------------CCCEEEEEEEEEEC
Q ss_conf             47997346610048867999999997505655-----------------66226999998539
Q gi|254780598|r  160 GGTAGVGVEVGGLSESLVARLEYRASKYSKVE-----------------GFYNTISLGVGMKF  205 (205)
Q Consensus       160 g~~~G~Gvey~~it~~~~~r~EY~y~df~~~~-----------------~~~~~~~~G~~ykF  205 (205)
                      .-.+.+|++| .|+++..+-+||-|.+..+..                 .+...|.+||.++|
T Consensus       269 ~~~~~lg~~Y-~lSKrT~lYa~~~y~~n~~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~rh~F  330 (330)
T d2fgqx1         269 AHQITLGYVH-NLSKRTALYGNLAFLKNKDASTLGLQAKGVYAGGVQAGESQTGVQVGIRHAF  330 (330)
T ss_dssp             EEEEEEEEEE-ESSSSEEEEEEEEEEEECTTCCCCCCBTTTBCSCCCTTCEEEEEEEEEEEEC
T ss_pred             CEEEEEEEEE-ECCCCHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEEEEC
T ss_conf             2499999999-7567618744206511258774210111001578789987599999989989

SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: Porins
family: Porin
domain: Porin
species: Comamonas acidovorans [TaxId: 80866]