HHSEARCH alignment of GI: 254780598 and SCOP domain: d3prna_

Alignment

Probab=97.62  E-value=0.00096  Score=34.65  Aligned_cols=38  Identities=16%  Similarity=0.325  Sum_probs=30.2

Q ss_pred             EEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf             99734661004886799999999750565566226999998539
Q gi|254780598|r  162 TAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNTISLGVGMKF  205 (205)
Q Consensus       162 ~~G~Gvey~~it~~~~~r~EY~y~df~~~~~~~~~~~~G~~ykF  205 (205)
                      .+++|++| .|+++.++.++|.+.+-.+     ....+||.|+|
T Consensus       252 ~~~lg~~Y-~ls~~~~l~a~~~~~~~~~-----~~a~~Gv~~~F  289 (289)
T d3prna_         252 AYGIGADY-QFAEGVKVSGSVQSGFANE-----TVADVGVRFDF  289 (289)
T ss_dssp             EEEEEEEE-EEETTEEEEEEEEECTTCC-----EEEEEEEEEEC
T ss_pred             EEEEEEEE-ECCCCEEEEEEEEEEECCC-----CEEEEEEEEEC
T ss_conf             89999999-8499849999999980898-----25725657769

SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Transmembrane beta-barrels
superfamily: Porins
family: Porin
domain: Porin
species: Rhodopseudomonas blastica, strain DSM2131 [TaxId: 1075]