RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780598|ref|YP_003065011.1| outer membrane protein
[Candidatus Liberibacter asiaticus str. psy62]
         (205 letters)



>gnl|CDD|183452 PRK12337, PRK12337, 2-phosphoglycerate kinase; Provisional.
          Length = 475

 Score = 29.4 bits (66), Expect = 0.67
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 10/55 (18%)

Query: 133 LLYATVGPDVAQKYETGKAGEITP----IAIGGTAGVGVEVGGLSESLVARLEYR 183
           LL    G +VA++Y   ++    P    + IGG +GVG  V      L + L YR
Sbjct: 230 LLLEEAGEEVARRYRLLRSIRRPPRPLHVLIGGVSGVGKSV------LASALAYR 278


>gnl|CDD|184632 PRK14336, PRK14336, (dimethylallyl)adenosine tRNA
           methylthiotransferase; Provisional.
          Length = 418

 Score = 29.1 bits (65), Expect = 0.75
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 104 PVLADNIHSLHGIGGSLRIR 123
           P LAD + +LH I G LRIR
Sbjct: 191 PCLADLLSALHDIPGLLRIR 210


>gnl|CDD|182724 PRK10780, PRK10780, periplasmic chaperone; Provisional.
          Length = 165

 Score = 27.9 bits (62), Expect = 1.9
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 1  MQKLFLAVGVSSLALASFCSAQAADPV 27
          M+K  LA G+  LALA+   AQAAD +
Sbjct: 1  MKKWLLAAGLG-LALATSAGAQAADKI 26


>gnl|CDD|173557 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional.
          Length = 548

 Score = 26.8 bits (59), Expect = 4.3
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 129 SDSLLLYATVGPDVAQKYETGKAGEITPIAIGGTAGVGVEVGGL 172
           S    L  T+ P+ A + + G  G  TP+      G  + + GL
Sbjct: 52  SRVTKLIVTLMPNGAAQEQGGATGRWTPV---YNHGFEIRIAGL 92


>gnl|CDD|147879 pfam05963, Cytomega_US3, Cytomegalovirus US3 protein.  US3 of human
           cytomegalovirus is an endoplasmic reticulum resident
           transmembrane glycoprotein that binds to major
           histocompatibility complex class I molecules and
           prevents their departure. The endoplasmic reticulum
           retention signal of the US3 protein is contained in the
           luminal domain of the protein.
          Length = 187

 Score = 25.8 bits (56), Expect = 7.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 162 TAGVGVEVGGLSESLVARLEYRASKYSKVEGFY 194
           T    V+ G +S+S +  L  RA +   + G Y
Sbjct: 64  TTFHFVDYGIVSQSYMDNLAVRAEQVEFIAGEY 96


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.318    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0685    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,411,292
Number of extensions: 218251
Number of successful extensions: 404
Number of sequences better than 10.0: 1
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 15
Length of query: 205
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 116
Effective length of database: 4,071,361
Effective search space: 472277876
Effective search space used: 472277876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)