RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780598|ref|YP_003065011.1| outer membrane protein
[Candidatus Liberibacter asiaticus str. psy62]
(205 letters)
>1orm_A Outer membrane protein X; OMPX, trosy, DHPC, detergents,
lipids, micelles; NMR {Escherichia coli} (A:)
Length = 148
Score = 50.0 bits (119), Expect = 2e-07
Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 5/142 (3%)
Query: 66 GSFGEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGI-GGSLRIRG 124
+ N G Y E+ GV G YT + + +
Sbjct: 10 AQSDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGP 69
Query: 125 GYEVSDSLLLYATVGPDVAQ-KYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYR 183
Y ++D +Y VG + + + G + G G++ E++ Y
Sbjct: 70 AYRINDWASIYGVVGVGYGKFQTTEYPTYKNDTSDYGFSYGAGLQF-NPMENVALDFSYE 128
Query: 184 ASKYSKVEGFYNTISLGVGMKF 205
S+ V+ T GVG +F
Sbjct: 129 QSRIRSVD--VGTWIAGVGYRF 148
>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli}
(A:)
Length = 171
Score = 37.8 bits (87), Expect = 0.001
Identities = 32/170 (18%), Positives = 54/170 (31%), Gaps = 16/170 (9%)
Query: 51 HDFNGPYAGLSALY--------NGSFGEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYT 102
N Y G + + G + G F GY V +
Sbjct: 2 PKDNTWYTGAKLGWSQYHDTGLINNNGPTHENKLGAGAFGGYQVNPYVGFEMGYDWLGRM 61
Query: 103 VPVLADNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQ-KYETGKAGEITPIAIGG 161
+ + G L + GY ++D L +Y +G V + + G+ +
Sbjct: 62 PYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADTYSNVYGKNHDTGVSP 121
Query: 162 TAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNT------ISLGVGMKF 205
GVE ++ + RLEY+ + T +SLGV +F
Sbjct: 122 VFAGGVEY-AITPEIATRLEYQWTNNIGDAHTIGTRPDNGMLSLGVSYRF 170
>2waq_B DNA-directed RNA polymerase RPO2 subunit; multi-subunit,
transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_B
2pmz_B 3hkz_B (B:657-748,B:875-1014)
Length = 232
Score = 31.2 bits (70), Expect = 0.098
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 72 AHHNAGGSI--FAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGIGG 118
A +NA ++ F GYN+EDS IM R +VP + D S HG G
Sbjct: 65 AGNNAILAVISFTGYNMEDSIIMN------RSSVPSIGDKFASRHGQKG 107
>2wfo_A Glycoprotein 1, MACV-GP1; arenavirus, NEW world arenavirus,
hemorrhagic fever virus, envelope protein, junin,
guanarito, sabia, chapare, virion; HET: NAG; 1.73A
{Machupo virus} (A:)
Length = 182
Score = 27.5 bits (61), Expect = 1.4
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 44 NRYVPIRHDFNGPYAGLSALYNGSFGEEAHHNAGGSIFAGYN-VEDSCIMYGVEGDVRYT 102
P+ G + +N S +E+ G I G + EG V Y
Sbjct: 71 LMDPPMLCRNKTKKEGSNIQFNISKADESRVY-GKKIRNGMRHLFRGFYDPCEEGKVCYV 129
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch
fever, rochalimaea, LYME disease, ALS collaborative
crystallography, DNA replication; 2.50A {Bartonella
henselae} (A:)
Length = 169
Score = 26.7 bits (58), Expect = 2.5
Identities = 15/103 (14%), Positives = 25/103 (24%), Gaps = 7/103 (6%)
Query: 23 AADPVRRAHHGGRGVVP-TIATNRYVPIRHDFNGPYAGLSALYNGSFGEEAHHNAGGSIF 81
DP + G VV +AT + + F A +
Sbjct: 33 GDDPESKTMTSGAEVVNFRMATFESYM-NKNTHQKVEKTEWHSVVVFNPHFAKIALQYLH 91
Query: 82 AGYNVEDSCIMY-----GVEGDVRYTVPVLADNIHSLHGIGGS 119
G V + G RYT ++ + +
Sbjct: 92 KGSKVYIEGKLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDA 134
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptide;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} (B:755-846,B:977-1113)
Length = 229
Score = 26.2 bits (57), Expect = 3.8
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 72 AHHNAGGSI--FAGYNVEDSCIM 92
A NA +I ++GYN EDS IM
Sbjct: 65 AGQNAIVAIACYSGYNQEDSMIM 87
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
translation termination, ATP-binding, cytoplasm,
hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
(A:1-326)
Length = 326
Score = 25.9 bits (56), Expect = 4.2
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 98 DVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSD--SLLLYATVGPDV---AQKY 146
D++ V ADN+ G+G + +L AT V A+++
Sbjct: 259 DIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERF 312
>1x3e_A Single-strand binding protein; oligonucleotide binding fold,
DNA-binding protein, DNA binding protein; 2.15A
{Mycobacterium smegmatis} PDB: 1x3f_A 1x3g_A 1ue1_A
1ue5_A 1ue6_A 1ue7_A (A:)
Length = 165
Score = 25.5 bits (55), Expect = 6.0
Identities = 22/102 (21%), Positives = 29/102 (28%), Gaps = 5/102 (4%)
Query: 23 AADPVRRAHHGGRGVVP-TIATNRYVPIRHDFNGPYAGLSALYNGSFGEEAHHNAG---- 77
ADP R G V T+A+ + R L + E A + A
Sbjct: 14 TADPELRFTPSGAAVANFTVASTPRMFDRQSGEWKDGEALFLRCNIWREAAENVAESLTR 73
Query: 78 GSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGIGGS 119
GS EG+ R V V D I +
Sbjct: 74 GSRVIVTGRLKQRSFETREGEKRTVVEVEVDEIGPSLRYATA 115
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 24.7 bits (54), Expect = 8.4
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 16/32 (50%)
Query: 152 GEITPIAIGGTAGVGVEVGGLSESLVARLEYR 183
++ I ESLV + YR
Sbjct: 3 ADVMSI----------------ESLVEVVFYR 18
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.318 0.138 0.403
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,561,460
Number of extensions: 68329
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 12
Length of query: 205
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 121
Effective length of database: 2,116,429
Effective search space: 256087909
Effective search space used: 256087909
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.4 bits)