RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780598|ref|YP_003065011.1| outer membrane protein [Candidatus Liberibacter asiaticus str. psy62] (205 letters) >1orm_A Outer membrane protein X; OMPX, trosy, DHPC, detergents, lipids, micelles; NMR {Escherichia coli} (A:) Length = 148 Score = 50.0 bits (119), Expect = 2e-07 Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 5/142 (3%) Query: 66 GSFGEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGI-GGSLRIRG 124 + N G Y E+ GV G YT + + + Sbjct: 10 AQSDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGP 69 Query: 125 GYEVSDSLLLYATVGPDVAQ-KYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYR 183 Y ++D +Y VG + + + G + G G++ E++ Y Sbjct: 70 AYRINDWASIYGVVGVGYGKFQTTEYPTYKNDTSDYGFSYGAGLQF-NPMENVALDFSYE 128 Query: 184 ASKYSKVEGFYNTISLGVGMKF 205 S+ V+ T GVG +F Sbjct: 129 QSRIRSVD--VGTWIAGVGYRF 148 >1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} (A:) Length = 171 Score = 37.8 bits (87), Expect = 0.001 Identities = 32/170 (18%), Positives = 54/170 (31%), Gaps = 16/170 (9%) Query: 51 HDFNGPYAGLSALY--------NGSFGEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYT 102 N Y G + + G + G F GY V + Sbjct: 2 PKDNTWYTGAKLGWSQYHDTGLINNNGPTHENKLGAGAFGGYQVNPYVGFEMGYDWLGRM 61 Query: 103 VPVLADNIHSLHGIGGSLRIRGGYEVSDSLLLYATVGPDVAQ-KYETGKAGEITPIAIGG 161 + + G L + GY ++D L +Y +G V + + G+ + Sbjct: 62 PYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADTYSNVYGKNHDTGVSP 121 Query: 162 TAGVGVEVGGLSESLVARLEYRASKYSKVEGFYNT------ISLGVGMKF 205 GVE ++ + RLEY+ + T +SLGV +F Sbjct: 122 VFAGGVEY-AITPEIATRLEYQWTNNIGDAHTIGTRPDNGMLSLGVSYRF 170 >2waq_B DNA-directed RNA polymerase RPO2 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_B 2pmz_B 3hkz_B (B:657-748,B:875-1014) Length = 232 Score = 31.2 bits (70), Expect = 0.098 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 8/49 (16%) Query: 72 AHHNAGGSI--FAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGIGG 118 A +NA ++ F GYN+EDS IM R +VP + D S HG G Sbjct: 65 AGNNAILAVISFTGYNMEDSIIMN------RSSVPSIGDKFASRHGQKG 107 >2wfo_A Glycoprotein 1, MACV-GP1; arenavirus, NEW world arenavirus, hemorrhagic fever virus, envelope protein, junin, guanarito, sabia, chapare, virion; HET: NAG; 1.73A {Machupo virus} (A:) Length = 182 Score = 27.5 bits (61), Expect = 1.4 Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 2/60 (3%) Query: 44 NRYVPIRHDFNGPYAGLSALYNGSFGEEAHHNAGGSIFAGYN-VEDSCIMYGVEGDVRYT 102 P+ G + +N S +E+ G I G + EG V Y Sbjct: 71 LMDPPMLCRNKTKKEGSNIQFNISKADESRVY-GKKIRNGMRHLFRGFYDPCEEGKVCYV 129 >3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae} (A:) Length = 169 Score = 26.7 bits (58), Expect = 2.5 Identities = 15/103 (14%), Positives = 25/103 (24%), Gaps = 7/103 (6%) Query: 23 AADPVRRAHHGGRGVVP-TIATNRYVPIRHDFNGPYAGLSALYNGSFGEEAHHNAGGSIF 81 DP + G VV +AT + + F A + Sbjct: 33 GDDPESKTMTSGAEVVNFRMATFESYM-NKNTHQKVEKTEWHSVVVFNPHFAKIALQYLH 91 Query: 82 AGYNVEDSCIMY-----GVEGDVRYTVPVLADNIHSLHGIGGS 119 G V + G RYT ++ + + Sbjct: 92 KGSKVYIEGKLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDA 134 >1twf_B DNA-directed RNA polymerase II 140 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (B:755-846,B:977-1113) Length = 229 Score = 26.2 bits (57), Expect = 3.8 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%) Query: 72 AHHNAGGSI--FAGYNVEDSCIM 92 A NA +I ++GYN EDS IM Sbjct: 65 AGQNAIVAIACYSGYNQEDSMIM 87 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 25.9 bits (56), Expect = 4.2 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 5/54 (9%) Query: 98 DVRYTVPVLADNIHSLHGIGGSLRIRGGYEVSD--SLLLYATVGPDV---AQKY 146 D++ V ADN+ G+G + +L AT V A+++ Sbjct: 259 DIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERF 312 >1x3e_A Single-strand binding protein; oligonucleotide binding fold, DNA-binding protein, DNA binding protein; 2.15A {Mycobacterium smegmatis} PDB: 1x3f_A 1x3g_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A (A:) Length = 165 Score = 25.5 bits (55), Expect = 6.0 Identities = 22/102 (21%), Positives = 29/102 (28%), Gaps = 5/102 (4%) Query: 23 AADPVRRAHHGGRGVVP-TIATNRYVPIRHDFNGPYAGLSALYNGSFGEEAHHNAG---- 77 ADP R G V T+A+ + R L + E A + A Sbjct: 14 TADPELRFTPSGAAVANFTVASTPRMFDRQSGEWKDGEALFLRCNIWREAAENVAESLTR 73 Query: 78 GSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGIGGS 119 GS EG+ R V V D I + Sbjct: 74 GSRVIVTGRLKQRSFETREGEKRTVVEVEVDEIGPSLRYATA 115 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 24.7 bits (54), Expect = 8.4 Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 16/32 (50%) Query: 152 GEITPIAIGGTAGVGVEVGGLSESLVARLEYR 183 ++ I ESLV + YR Sbjct: 3 ADVMSI----------------ESLVEVVFYR 18 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.318 0.138 0.403 Gapped Lambda K H 0.267 0.0487 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,561,460 Number of extensions: 68329 Number of successful extensions: 126 Number of sequences better than 10.0: 1 Number of HSP's gapped: 126 Number of HSP's successfully gapped: 12 Length of query: 205 Length of database: 4,956,049 Length adjustment: 84 Effective length of query: 121 Effective length of database: 2,116,429 Effective search space: 256087909 Effective search space used: 256087909 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.4 bits)