RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780598|ref|YP_003065011.1| outer membrane protein
[Candidatus Liberibacter asiaticus str. psy62]
         (205 letters)



>d1qj8a_ f.4.1.1 (A:) Outer membrane protein X (OMPX) {Escherichia
           coli [TaxId: 562]}
          Length = 148

 Score = 57.3 bits (138), Expect = 9e-10
 Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 5/133 (3%)

Query: 75  NAGGSIFAGYNVEDSCIMYGVEGDVRYTVP-VLADNIHSLHGIGGSLRIRGGYEVSDSLL 133
           N  G     Y  E+     GV G   YT     A +          +     Y ++D   
Sbjct: 19  NKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWAS 78

Query: 134 LYATVGPDVAQ-KYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEG 192
           +Y  VG    + +       +      G + G G++     E++     Y  S+   V+ 
Sbjct: 79  IYGVVGVGYGKFQTTEYPTYKNDTSDYGFSYGAGLQF-NPMENVALDFSYEQSRIRSVD- 136

Query: 193 FYNTISLGVGMKF 205
              T   GVG +F
Sbjct: 137 -VGTWIAGVGYRF 148


>d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria
           meningitidis [TaxId: 487]}
          Length = 155

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 26/157 (16%), Positives = 46/157 (29%), Gaps = 12/157 (7%)

Query: 55  GPYAGLSALY-NGSFGEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSL 113
           G Y    A +   S    +       I AGY + D         D        A +    
Sbjct: 5   GFYVQADAAHAKASSSLGSAKGFSPRISAGYRIND----LRFAVDYTRYKNYKAPS-TDF 59

Query: 114 HGIGGSLRIRGGYEVSDSLLLYATVGPDVAQ-KYETGKAGEITPIAIGGTAGVGVEVGGL 172
                       ++    +  Y      + +   + G +   +  +IG     GV    +
Sbjct: 60  KLYSIGASAIYDFDTQSPVKPYLGARLSLNRASVDLGGSDSFSQTSIGLGVLTGVSYA-V 118

Query: 173 SESLVARLEYRASKYSKVEG----FYNTISLGVGMKF 205
           + ++     YR +   KV          +S GV +KF
Sbjct: 119 TPNVDLDAGYRYNYIGKVNTVKNVRSGELSAGVRVKF 155


>d1i78a_ f.4.4.1 (A:) Outer membrane protease OMPT {Escherichia coli
           [TaxId: 562]}
          Length = 297

 Score = 25.6 bits (56), Expect = 3.6
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 17/67 (25%)

Query: 53  FNGPYAGLSALY-------NGSF---------GEEAHHNAGGSIFAGYNVEDSCIMYGVE 96
           F  PY GL+  Y        G+F           + H++  G I     V+D    Y V 
Sbjct: 176 FKMPYIGLTGSYRYEDFELGGTFKYSGWVESSDNDEHYDPKGRITYRSKVKDQ-NYYSVA 234

Query: 97  GDVRYTV 103
            +  Y V
Sbjct: 235 VNAGYYV 241


>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R
           [TaxId: 56673]}
          Length = 377

 Score = 24.4 bits (52), Expect = 6.6
 Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 1/28 (3%)

Query: 103 VPVLADNIHSLHGIGGSLRIRGGYEVSD 130
           V      I  ++    SL  R GY V +
Sbjct: 11  VTADVTAISKVNSDTNSLLYR-GYPVQE 37


>d1kica_ c.70.1.1 (A:) Inosine-adenosine-guanosine preferring
           nucleoside hydrolase {Trypanosoma vivax [TaxId: 5699]}
          Length = 327

 Score = 23.9 bits (51), Expect = 9.1
 Identities = 12/106 (11%), Positives = 25/106 (23%), Gaps = 4/106 (3%)

Query: 59  GLSALYNGSFGEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGIGG 118
           G        F E   +  G  +   +N  +  +    +       P   +       +  
Sbjct: 33  GALCTDADCFVENGFNVTGKIMCLMHNNMNLPLFPIGKSAATAVNPFPKEWRCLAKNMDD 92

Query: 119 --SLRIRGGYEVSDSLLLYATVGPDVAQKYETGKA--GEITPIAIG 160
              L I    E+ D +              +       ++T    G
Sbjct: 93  MPILNIPENVELWDKIKAENEKYEGQQLLADLVMNSEEKVTICVTG 138


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 744,563
Number of extensions: 33272
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 7
Length of query: 205
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,295,466
Effective search space: 160637784
Effective search space used: 160637784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)