RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780598|ref|YP_003065011.1| outer membrane protein [Candidatus Liberibacter asiaticus str. psy62] (205 letters) >d1qj8a_ f.4.1.1 (A:) Outer membrane protein X (OMPX) {Escherichia coli [TaxId: 562]} Length = 148 Score = 57.3 bits (138), Expect = 9e-10 Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 5/133 (3%) Query: 75 NAGGSIFAGYNVEDSCIMYGVEGDVRYTVP-VLADNIHSLHGIGGSLRIRGGYEVSDSLL 133 N G Y E+ GV G YT A + + Y ++D Sbjct: 19 NKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWAS 78 Query: 134 LYATVGPDVAQ-KYETGKAGEITPIAIGGTAGVGVEVGGLSESLVARLEYRASKYSKVEG 192 +Y VG + + + G + G G++ E++ Y S+ V+ Sbjct: 79 IYGVVGVGYGKFQTTEYPTYKNDTSDYGFSYGAGLQF-NPMENVALDFSYEQSRIRSVD- 136 Query: 193 FYNTISLGVGMKF 205 T GVG +F Sbjct: 137 -VGTWIAGVGYRF 148 >d1p4ta_ f.4.1.1 (A:) Outer membrane protein NspA {Neisseria meningitidis [TaxId: 487]} Length = 155 Score = 37.0 bits (85), Expect = 0.001 Identities = 26/157 (16%), Positives = 46/157 (29%), Gaps = 12/157 (7%) Query: 55 GPYAGLSALY-NGSFGEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSL 113 G Y A + S + I AGY + D D A + Sbjct: 5 GFYVQADAAHAKASSSLGSAKGFSPRISAGYRIND----LRFAVDYTRYKNYKAPS-TDF 59 Query: 114 HGIGGSLRIRGGYEVSDSLLLYATVGPDVAQ-KYETGKAGEITPIAIGGTAGVGVEVGGL 172 ++ + Y + + + G + + +IG GV + Sbjct: 60 KLYSIGASAIYDFDTQSPVKPYLGARLSLNRASVDLGGSDSFSQTSIGLGVLTGVSYA-V 118 Query: 173 SESLVARLEYRASKYSKVEG----FYNTISLGVGMKF 205 + ++ YR + KV +S GV +KF Sbjct: 119 TPNVDLDAGYRYNYIGKVNTVKNVRSGELSAGVRVKF 155 >d1i78a_ f.4.4.1 (A:) Outer membrane protease OMPT {Escherichia coli [TaxId: 562]} Length = 297 Score = 25.6 bits (56), Expect = 3.6 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 17/67 (25%) Query: 53 FNGPYAGLSALY-------NGSF---------GEEAHHNAGGSIFAGYNVEDSCIMYGVE 96 F PY GL+ Y G+F + H++ G I V+D Y V Sbjct: 176 FKMPYIGLTGSYRYEDFELGGTFKYSGWVESSDNDEHYDPKGRITYRSKVKDQ-NYYSVA 234 Query: 97 GDVRYTV 103 + Y V Sbjct: 235 VNAGYYV 241 >d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} Length = 377 Score = 24.4 bits (52), Expect = 6.6 Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 1/28 (3%) Query: 103 VPVLADNIHSLHGIGGSLRIRGGYEVSD 130 V I ++ SL R GY V + Sbjct: 11 VTADVTAISKVNSDTNSLLYR-GYPVQE 37 >d1kica_ c.70.1.1 (A:) Inosine-adenosine-guanosine preferring nucleoside hydrolase {Trypanosoma vivax [TaxId: 5699]} Length = 327 Score = 23.9 bits (51), Expect = 9.1 Identities = 12/106 (11%), Positives = 25/106 (23%), Gaps = 4/106 (3%) Query: 59 GLSALYNGSFGEEAHHNAGGSIFAGYNVEDSCIMYGVEGDVRYTVPVLADNIHSLHGIGG 118 G F E + G + +N + + + P + + Sbjct: 33 GALCTDADCFVENGFNVTGKIMCLMHNNMNLPLFPIGKSAATAVNPFPKEWRCLAKNMDD 92 Query: 119 --SLRIRGGYEVSDSLLLYATVGPDVAQKYETGKA--GEITPIAIG 160 L I E+ D + + ++T G Sbjct: 93 MPILNIPENVELWDKIKAENEKYEGQQLLADLVMNSEEKVTICVTG 138 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.318 0.138 0.403 Gapped Lambda K H 0.267 0.0643 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 744,563 Number of extensions: 33272 Number of successful extensions: 67 Number of sequences better than 10.0: 1 Number of HSP's gapped: 66 Number of HSP's successfully gapped: 7 Length of query: 205 Length of database: 2,407,596 Length adjustment: 81 Effective length of query: 124 Effective length of database: 1,295,466 Effective search space: 160637784 Effective search space used: 160637784 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (23.6 bits)