HHsearch alignment for GI: 254780600 and conserved domain: COG0558
>COG0558 PgsA Phosphatidylglycerophosphate synthase [Lipid metabolism].
Probab=100.00 E-value=5.9e-40 Score=246.25 Aligned_cols=181 Identities=40% Similarity=0.600 Sum_probs=156.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 00016479999999999999999985244554542147999999999999998664999997187125688899899887
Q gi|254780600|r 4 RSYNIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYLARVWNQTSNIGRMLDPIADKL 83 (200)
Q Consensus 4 ~~~~lpN~lT~~Ri~l~p~~~~~~~~~~~~~~~~~~~~~~~a~~lf~~a~~tD~lDG~iAR~~n~~S~~G~~lDp~aDki 83 (200)
T Consensus 10 ~~~~~PN~lTl~r~~l~~~~~~~~~~~~-------~~~~~~~~~l~~~a~l~D~lDG~lAR~~~~~S~~G~~LDp~~Dk~ 82 (192)
T COG0558 10 KLGNTPNQLTLLRIFLIPLFALLLLLPG-------LGLLLLALVLFLLAALTDALDGYLARKWGQVSRFGAFLDPVADKL 82 (192)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 7316971999999999999999999985-------679999999999999998600999998189884165743255799
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 6554678988643310474112345423455433456788520--66663025688999999999999996420011103
Q gi|254780600|r 84 LISSVLLLMTADGTINRYSIWAAITILCREILVSGLREYLAEL--KVSVPVTRIARFKTGIQMISIGFLLAGPACENQTS 161 (200)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~w~~ilii~Rei~i~~lr~~~~~~--~~~i~~~~~GK~kT~~q~~~i~~~L~~~~~~~~~~ 161 (200)
T Consensus 83 ~~~~~l~~l~~~~~~~--~~~~~~l~l~r~~~vs~~r~~~~~~g~~~~~~~~~~gk~~t~~~~~~i~~~l~~~~~~---~ 157 (192)
T COG0558 83 LDAALLLGLVALGPVS--PLWLAILILAREILVSYLRALAASLGGRDYVGASGRGKRKTILQMVALLLLLLGLLLT---P 157 (192)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCH---H
T ss_conf 9999999999980201--6999999999999999999999982687441600345899999999999999863012---5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 899999999999999999999999999999510154
Q gi|254780600|r 162 YITGTGIILLWISALLTIYSGYDYFRVGIKHIDSED 197 (200)
Q Consensus 162 ~~~~~~~~~~~ia~~lti~Sg~~Y~~~~~~~~~~~~ 197 (200)
T Consensus 158 ~~~~~~~~l~~-~~~lt~~t~~~y~~~~~~~~~~~~ 192 (192)
T COG0558 158 LWLLLGLVLLA-AAVLTLITGIQYLLAALKSLKSKD 192 (192)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 68999999999-999999999999999998750369