Query gi|254780600|ref|YP_003065013.1| CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 200
No_of_seqs 133 out of 2596
Neff 7.7
Searched_HMMs 39220
Date Sun May 29 21:40:44 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780600.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00560 pgsA CDP-diacylglyce 100.0 0 0 310.2 19.1 188 6-196 1-217 (217)
2 PRK10832 phosphatidylglyceroph 100.0 0 0 302.7 19.5 179 5-196 2-182 (182)
3 COG0558 PgsA Phosphatidylglyce 100.0 5.9E-40 1.5E-44 246.3 19.2 181 4-197 10-192 (192)
4 KOG1617 consensus 100.0 3.9E-36 1E-40 224.5 10.0 157 2-185 64-237 (243)
5 pfam01066 CDP-OH_P_transf CDP- 99.7 3.8E-17 9.7E-22 116.6 9.8 81 6-96 2-82 (96)
6 KOG2877 consensus 99.6 6.2E-15 1.6E-19 104.0 10.6 144 6-155 50-197 (389)
7 KOG3240 consensus 99.5 3.5E-12 9E-17 88.4 17.3 136 5-156 12-167 (218)
8 COG1183 PssA Phosphatidylserin 99.5 2.5E-12 6.3E-17 89.3 14.6 73 2-84 5-77 (234)
9 PTZ00307 ethanolamine phosphot 99.5 2.8E-12 7.1E-17 89.0 13.6 139 6-152 60-203 (417)
10 TIGR00473 pssA CDP-diacylglyce 99.1 7.1E-09 1.8E-13 69.6 12.9 108 41-152 26-141 (174)
11 COG5050 EPT1 sn-1,2-diacylglyc 99.0 1E-09 2.6E-14 74.4 7.7 87 6-93 44-132 (384)
12 KOG1718 consensus 62.4 4 0.0001 19.9 1.4 18 68-85 72-89 (198)
13 TIGR02121 Na_Pro_sym sodium/pr 55.8 15 0.00037 16.7 5.1 26 2-27 101-134 (517)
14 TIGR00445 mraY phospho-N-acety 54.0 8.8 0.00023 17.9 2.0 26 38-63 139-171 (336)
15 TIGR00382 clpX ATP-dependent C 37.9 8.5 0.00022 18.1 -0.2 75 45-119 281-366 (452)
16 pfam01733 Nucleoside_tran Nucl 33.8 33 0.00085 14.7 4.6 12 141-152 216-227 (305)
17 TIGR01922 purO_arch IMP cycloh 29.4 12 0.0003 17.3 -0.6 11 73-83 76-86 (209)
18 TIGR01512 ATPase-IB2_Cd cadmiu 26.9 44 0.0011 14.0 3.0 76 65-141 150-237 (494)
19 pfam06055 ExoD Exopolysacchari 26.5 45 0.0011 13.9 5.2 32 53-84 2-33 (187)
20 TIGR00680 kdpA K+-transporting 26.3 45 0.0012 13.9 3.0 46 41-86 6-53 (571)
21 PRK09573 (S)-2,3-di-O-geranylg 24.6 49 0.0012 13.7 17.0 69 125-199 185-253 (280)
No 1
>TIGR00560 pgsA CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; InterPro: IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (2.7.8.5 from EC), also known as phosphatidylglycerophosphate synthase, glycerophosphate phosphatidyltransferase and PGP synthase, catalyses the conversion ofCDP-diacylglycerol and glycerol-3-phosphate to CMP and 3-(3-phosphatidyl)-glycerol 1-phosphate in the commited step to the synthesis of acidic phospholipids. It is an integral membrane protein. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharomyces cerevisiae (Baker's yeast) YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.; GO: 0008444 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity, 0008654 phospholipid biosynthetic process, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=310.22 Aligned_cols=188 Identities=37% Similarity=0.613 Sum_probs=159.0
Q ss_pred CCHHHHHHHHHH-HHHHHHHHHHHHCCCCCCC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 016479999999-9999999999852445545---------421479999999999999986649999971871256888
Q gi|254780600|r 6 YNIPNMLTYGRI-LVVPLIVLCFFIQEIGSFT---------SPNLMRWIALSLFTIASITDFFDGYLARVWNQTSNIGRM 75 (200)
Q Consensus 6 ~~lpN~lT~~Ri-~l~p~~~~~~~~~~~~~~~---------~~~~~~~~a~~lf~~a~~tD~lDG~iAR~~n~~S~~G~~ 75 (200)
+|+||.+|+.|+ .+.|.++..++.+..+... +.....+++..+|+.|+.|||+|||+|||+||+|+|||+
T Consensus 1 ~~~Pn~lT~~Ri~~~~p~~~l~~l~~~~~~~~~~~vG~~~~~~~~~~~~~~~lF~~A~~TDwlDGYlARk~~~vs~fGk~ 80 (217)
T TIGR00560 1 KNIPNWLTLFRIFILLPLFILIFLENLLGVLAEFGVGAVVLPIQVSLFIGGLLFLIAAVTDWLDGYLARKWNLVSNFGKF 80 (217)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 97607999999999999999996320021100222130002387998999999999979877789999996021212346
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHH--H
Q ss_conf 998998876554--6789886433104741123454234554334567885206-6663025688999999999999--9
Q gi|254780600|r 76 LDPIADKLLISS--VLLLMTADGTINRYSIWAAITILCREILVSGLREYLAELK-VSVPVTRIARFKTGIQMISIGF--L 150 (200)
Q Consensus 76 lDp~aDki~~~~--~~~~l~~~~~~~~~~~w~~ilii~Rei~i~~lr~~~~~~~-~~i~~~~~GK~kT~~q~~~i~~--~ 150 (200)
|||+|||+++.+ .++.+...+.. |.|+++++++||+.|+++|.++.+.| ..+++|++||+||..||++++. +
T Consensus 81 lDPlADK~lv~~a~~Li~l~~~~~~---~~~~~~vii~RE~~i~glR~~~~~~~~~~~~aN~lGK~KT~~Q~vAi~~SlL 157 (217)
T TIGR00560 81 LDPLADKVLVLAALVLIILVYHGYV---PAWFVIVIIARELVISGLRVLAAEKGKEVIAANWLGKWKTVAQMVAIAASLL 157 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 4028769999999999999998799---9999999999999999999999980882010302007999999999999998
Q ss_pred HHHHHCC--------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 9642001--------------110389999999999999999999999999999951015
Q gi|254780600|r 151 LAGPACE--------------NQTSYITGTGIILLWISALLTIYSGYDYFRVGIKHIDSE 196 (200)
Q Consensus 151 L~~~~~~--------------~~~~~~~~~~~~~~~ia~~lti~Sg~~Y~~~~~~~~~~~ 196 (200)
+...... +........+....|+|+++|++||.+|..+..+.++.+
T Consensus 158 l~~~~~~nftesvqnf~~~~l~~~~~~~~~~~~~~~~A~~ltl~S~~~Y~~~~~~~lk~~ 217 (217)
T TIGR00560 158 LWSLNQLNFTESVQNFESYSLNFKLFFELIAQLLYYIAAVLTLVSGIEYLIKIYKSLKDE 217 (217)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 315433567889999999999988999999999999999999999999999999965039
No 2
>PRK10832 phosphatidylglycerophosphate synthetase; Provisional
Probab=100.00 E-value=0 Score=302.74 Aligned_cols=179 Identities=36% Similarity=0.691 Sum_probs=149.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 00164799999999999999999852445545421479999999999999986649999971871256888998998876
Q gi|254780600|r 5 SYNIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYLARVWNQTSNIGRMLDPIADKLL 84 (200)
Q Consensus 5 ~~~lpN~lT~~Ri~l~p~~~~~~~~~~~~~~~~~~~~~~~a~~lf~~a~~tD~lDG~iAR~~n~~S~~G~~lDp~aDki~ 84 (200)
.||+||.+|++|++++|+++++++.+.. ...+.+..+|++|++||++|||+|||+||+|++|+++||+|||++
T Consensus 2 ~~niPN~LT~~Ri~lvP~~v~~~~~~~~-------~~~~~a~~lf~~a~iTD~lDG~lARk~n~~S~lG~~lDPiADKll 74 (182)
T PRK10832 2 QFNIPTLLTLFRVILIPFFVLVFYLPFT-------WAPFVCALIFCVAAVTDWFDGFLARRWNQSTRFGAFLDPVADKVL 74 (182)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 9870289999999999999999997344-------189999999999999999979999876996850336447888999
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 5546789886433104741123454234554334567885206--66630256889999999999999964200111038
Q gi|254780600|r 85 ISSVLLLMTADGTINRYSIWAAITILCREILVSGLREYLAELK--VSVPVTRIARFKTGIQMISIGFLLAGPACENQTSY 162 (200)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~w~~ilii~Rei~i~~lr~~~~~~~--~~i~~~~~GK~kT~~q~~~i~~~L~~~~~~~~~~~ 162 (200)
+.+.++.+.... .+.+..++..++++||+.++++|+++++.+ .+++++++||+||++||+++++++..+.. .
T Consensus 75 v~~~li~l~~~~-~~~~~~~~~~iii~Re~~Is~~r~~~~~~~~~~~i~~~~~GK~kT~~Q~~ai~~ll~~~~~-----~ 148 (182)
T PRK10832 75 VAIAMVLVTEHY-HSWWVTLPAATMIAREIIISALREWMAELGKRSSVAVSWIGKVKTTAQMVALAWLLWRPNI-----W 148 (182)
T ss_pred HHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHH-----H
T ss_conf 999999999704-3189999999999999999999999998487655354157999999999999999975345-----6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 9999999999999999999999999999951015
Q gi|254780600|r 163 ITGTGIILLWISALLTIYSGYDYFRVGIKHIDSE 196 (200)
Q Consensus 163 ~~~~~~~~~~ia~~lti~Sg~~Y~~~~~~~~~~~ 196 (200)
....+..++|+++++|++||++|++++++++.++
T Consensus 149 ~~~~~~~ll~ia~~lTv~Sg~~Yl~~~r~~l~~~ 182 (182)
T PRK10832 149 VEYAGIALFFVAAVLTLWSMLQYLSAARADLLDQ 182 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999999999999999999976149
No 3
>COG0558 PgsA Phosphatidylglycerophosphate synthase [Lipid metabolism]
Probab=100.00 E-value=5.9e-40 Score=246.25 Aligned_cols=181 Identities=40% Similarity=0.600 Sum_probs=156.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 00016479999999999999999985244554542147999999999999998664999997187125688899899887
Q gi|254780600|r 4 RSYNIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYLARVWNQTSNIGRMLDPIADKL 83 (200)
Q Consensus 4 ~~~~lpN~lT~~Ri~l~p~~~~~~~~~~~~~~~~~~~~~~~a~~lf~~a~~tD~lDG~iAR~~n~~S~~G~~lDp~aDki 83 (200)
+.+|+||.+|++|++++|++..+++.++ ....+.+..+|.++++||++||++|||+||+|++|+++||++||+
T Consensus 10 ~~~~~PN~lTl~r~~l~~~~~~~~~~~~-------~~~~~~~~~l~~~a~l~D~lDG~lAR~~~~~S~~G~~LDp~~Dk~ 82 (192)
T COG0558 10 KLGNTPNQLTLLRIFLIPLFALLLLLPG-------LGLLLLALVLFLLAALTDALDGYLARKWGQVSRFGAFLDPVADKL 82 (192)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 7316971999999999999999999985-------679999999999999998600999998189884165743255799
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 6554678988643310474112345423455433456788520--66663025688999999999999996420011103
Q gi|254780600|r 84 LISSVLLLMTADGTINRYSIWAAITILCREILVSGLREYLAEL--KVSVPVTRIARFKTGIQMISIGFLLAGPACENQTS 161 (200)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~w~~ilii~Rei~i~~lr~~~~~~--~~~i~~~~~GK~kT~~q~~~i~~~L~~~~~~~~~~ 161 (200)
...+.++.+...+..+ |+|..+++++||+.+++.|.+++.. +...++++.||.||..||.++...+...... .
T Consensus 83 ~~~~~l~~l~~~~~~~--~~~~~~l~l~r~~~vs~~r~~~~~~g~~~~~~~~~~gk~~t~~~~~~i~~~l~~~~~~---~ 157 (192)
T COG0558 83 LDAALLLGLVALGPVS--PLWLAILILAREILVSYLRALAASLGGRDYVGASGRGKRKTILQMVALLLLLLGLLLT---P 157 (192)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCH---H
T ss_conf 9999999999980201--6999999999999999999999982687441600345899999999999999863012---5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 899999999999999999999999999999510154
Q gi|254780600|r 162 YITGTGIILLWISALLTIYSGYDYFRVGIKHIDSED 197 (200)
Q Consensus 162 ~~~~~~~~~~~ia~~lti~Sg~~Y~~~~~~~~~~~~ 197 (200)
.....+.++.+ ++++|++|+++|+...+++.++++
T Consensus 158 ~~~~~~~~l~~-~~~lt~~t~~~y~~~~~~~~~~~~ 192 (192)
T COG0558 158 LWLLLGLVLLA-AAVLTLITGIQYLLAALKSLKSKD 192 (192)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 68999999999-999999999999999998750369
No 4
>KOG1617 consensus
Probab=100.00 E-value=3.9e-36 Score=224.53 Aligned_cols=157 Identities=34% Similarity=0.453 Sum_probs=134.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 86000164799999999999999999852445545421479999999999999986649999971871256888998998
Q gi|254780600|r 2 ASRSYNIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYLARVWNQTSNIGRMLDPIAD 81 (200)
Q Consensus 2 ~~~~~~lpN~lT~~Ri~l~p~~~~~~~~~~~~~~~~~~~~~~~a~~lf~~a~~tD~lDG~iAR~~n~~S~~G~~lDp~aD 81 (200)
+++++|+||.+|+.|+.++|++.+++..+.+ -.|+++|.+|++||++|||+|||+++.|.+|++|||+||
T Consensus 64 ~~kv~tiPN~Ltl~Ri~a~Pli~~lii~~~~----------t~A~~~Fa~Ag~TD~lDGyIARk~~l~S~~Gs~LDPlAD 133 (243)
T KOG1617 64 KSKVLTIPNMLTLARIAATPLIGYLIIDENF----------TAAFGLFAVAGITDLLDGYIARKMRLGSIAGSVLDPLAD 133 (243)
T ss_pred CCCCCCCCHHHHHHHHHHHCEEEEEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHH
T ss_conf 0221126327888787430604677751334----------099999999876887778888631334034430274888
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-----------------CCCCCHHHHHHHHHHHH
Q ss_conf 8765546789886433104741123454234554334567885206-----------------66630256889999999
Q gi|254780600|r 82 KLLISSVLLLMTADGTINRYSIWAAITILCREILVSGLREYLAELK-----------------VSVPVTRIARFKTGIQM 144 (200)
Q Consensus 82 ki~~~~~~~~l~~~~~~~~~~~w~~ilii~Rei~i~~lr~~~~~~~-----------------~~i~~~~~GK~kT~~q~ 144 (200)
|+++.+..+++.+.+.+ |+.++.+|+.||+...+.+.|.+.+. ..+.+....|++|++|+
T Consensus 134 kvlit~~~l~m~~~~li---PvpL~~~IIgRDV~Lv~~~~y~ry~~l~~p~~~a~~f~~~~~~~~l~~~~~Sk~ntv~ql 210 (243)
T KOG1617 134 KVLITCLTLCMVYADLI---PVPLASIIIGRDVLLVAGAFYLRYQNLKLPYTLAVFFNPWKAATQLTPLLASKVNTVFQL 210 (243)
T ss_pred HHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 89999999998763025---740345555567899999999998627875047775364554433040465432088888
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999996420011103899999999999999999999999
Q gi|254780600|r 145 ISIGFLLAGPACENQTSYITGTGIILLWISALLTIYSGYDY 185 (200)
Q Consensus 145 ~~i~~~L~~~~~~~~~~~~~~~~~~~~~ia~~lti~Sg~~Y 185 (200)
+.++..++.+.++... ..++++|+.+|
T Consensus 211 ~lva~~ll~~~~~~s~--------------~~ttv~~~~~y 237 (243)
T KOG1617 211 TLVAAGLLYPLFGYSD--------------ATTTVYSTYSY 237 (243)
T ss_pred HHHHHHHHHHHCCCCC--------------HHHHHHHHHHH
T ss_conf 9987767777517751--------------16678888878
No 5
>pfam01066 CDP-OH_P_transf CDP-alcohol phosphatidyltransferase. All of these members have the ability to catalyse the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond.
Probab=99.72 E-value=3.8e-17 Score=116.64 Aligned_cols=81 Identities=32% Similarity=0.421 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 01647999999999999999998524455454214799999999999999866499999718712568889989988765
Q gi|254780600|r 6 YNIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYLARVWNQTSNIGRMLDPIADKLLI 85 (200)
Q Consensus 6 ~~lpN~lT~~Ri~l~p~~~~~~~~~~~~~~~~~~~~~~~a~~lf~~a~~tD~lDG~iAR~~n~~S~~G~~lDp~aDki~~ 85 (200)
.+.||.+|..|+++.+...+++..++. +++..++.++.++|.+||++||+.|++|++|+++||++||+..
T Consensus 2 ~~~pN~iT~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~D~~DG~~AR~~~~~S~~G~~lD~~~D~~~~ 71 (96)
T pfam01066 2 GITPNLITLLRLILGLLAALLLLLGQY----------LLAALLLLLAGLLDGLDGKLARRTGQSSPLGALLDSVADRLSD 71 (96)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCH----------HHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 837789999999999999999990759----------9999999999999954199998859989379898588469999
Q ss_pred HHHHHHHHHHH
Q ss_conf 54678988643
Q gi|254780600|r 86 SSVLLLMTADG 96 (200)
Q Consensus 86 ~~~~~~l~~~~ 96 (200)
....+.+....
T Consensus 72 ~~~~~~l~~~~ 82 (96)
T pfam01066 72 VALLLGLLLLG 82 (96)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999993
No 6
>KOG2877 consensus
Probab=99.61 E-value=6.2e-15 Score=104.05 Aligned_cols=144 Identities=22% Similarity=0.263 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHH--HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 01647999999999--9999999985244554542147999999999999998664999997187125688899899887
Q gi|254780600|r 6 YNIPNMLTYGRILV--VPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYLARVWNQTSNIGRMLDPIADKL 83 (200)
Q Consensus 6 ~~lpN~lT~~Ri~l--~p~~~~~~~~~~~~~~~~~~~~~~~a~~lf~~a~~tD~lDG~iAR~~n~~S~~G~~lDp~aDki 83 (200)
|--||.||+..+.. +-+++..++.+...+..+.+.+...|+++|++..+ |.+||+.|||.|+.|++|+++|+-+|.+
T Consensus 50 wmAPNlITL~Gl~~~v~~~Ll~~~ydP~~~~~~P~W~y~a~alglFlYqTl-DaiDGkQARRTnsSsPLGELFDHG~DS~ 128 (389)
T KOG2877 50 WMAPNLITLIGLIFNVITVLLLLYYDPNLDEPAPRWTYFAAALGLFLYQTL-DAIDGKQARRTNSSSPLGELFDHGCDSI 128 (389)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCCCCHHHCCCCCCCCCHHHHCCCCHHH
T ss_conf 028508999989999999999984186568998747999999999998730-3556466400789997376651351057
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf 655467898864331047411234542345543345678852066663-02568899-9999999999996420
Q gi|254780600|r 84 LISSVLLLMTADGTINRYSIWAAITILCREILVSGLREYLAELKVSVP-VTRIARFK-TGIQMISIGFLLAGPA 155 (200)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~w~~ilii~Rei~i~~lr~~~~~~~~~i~-~~~~GK~k-T~~q~~~i~~~L~~~~ 155 (200)
-..-..+..+..-..+..|.|....-++ +....++++...... .-++|+.. |..|+..++..++...
T Consensus 129 stvf~~l~~~s~~~~G~~~~~~~~~~~~-----~~~~FY~ahWe~Y~Tg~L~l~~~~gtEgq~~i~~~~l~Tai 197 (389)
T KOG2877 129 STVFVTLAVCSAFGLGTSPYWLFLFQFA-----SLVLFYLAHWEEYHTGTLRLGRFDGTEGQVSIIIVHLLTAI 197 (389)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHH-----HHHHHHHCCHHHEECCEEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 8899999999996799876208999999-----99999972455404444999887332014689999999998
No 7
>KOG3240 consensus
Probab=99.51 E-value=3.5e-12 Score=88.40 Aligned_cols=136 Identities=22% Similarity=0.302 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 00164799999999999999999852445545421479999999999999986649999971871256888998998876
Q gi|254780600|r 5 SYNIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYLARVWNQTSNIGRMLDPIADKLL 84 (200)
Q Consensus 5 ~~~lpN~lT~~Ri~l~p~~~~~~~~~~~~~~~~~~~~~~~a~~lf~~a~~tD~lDG~iAR~~n~~S~~G~~lDp~aDki~ 84 (200)
.+++||.+-..|++++- +.+++... ....+.+++..++.-|++||+.||++||+|+||+.||-+.|+--
T Consensus 12 ~~~iPN~iGY~RI~lai--isf~vm~~---------~p~~~~~lY~~S~lLDAfDG~aAR~~NQ~S~fGA~LDmvTDR~s 80 (218)
T KOG3240 12 FLYIPNLIGYMRIVLAI--LSFYVMSS---------NPTTFSVLYLLSSLLDAFDGWAARKLNQVSRFGAMLDMVTDRCS 80 (218)
T ss_pred EEEECCHHHHHHHHHHH--HHHHHHCC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89844056499999999--99999526---------93389999999877876527999987204258899999987762
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHH--HHHHHHHHHHHHHH-------HHCCCCCCCHH-----------HHHHHHHHHH
Q ss_conf 5546789886433104741123454--23455433456788-------52066663025-----------6889999999
Q gi|254780600|r 85 ISSVLLLMTADGTINRYSIWAAITI--LCREILVSGLREYL-------AELKVSVPVTR-----------IARFKTGIQM 144 (200)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~w~~ili--i~Rei~i~~lr~~~-------~~~~~~i~~~~-----------~GK~kT~~q~ 144 (200)
..+.+..++. .+|-|.+.+= ++=|+.--.+..+. .|+...-+.|| +|-.-..-.+
T Consensus 81 t~~LL~~L~~-----~Yp~~l~~fqL~~~lDiaSHwlhm~st~l~G~sSHK~v~~~~n~llrLYY~~r~vL~~~C~~nE~ 155 (218)
T KOG3240 81 TACLLVFLCQ-----FYPPYLVFFQLSMALDIASHWLHMHSTVLVGKSSHKDVDDSTNWLLRLYYTNRDVLFTICAGNEL 155 (218)
T ss_pred HHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEHHHHHHHHH
T ss_conf 6999999999-----85238899999999999999999999998063214545666662678886376411025554799
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999964200
Q gi|254780600|r 145 ISIGFLLAGPAC 156 (200)
Q Consensus 145 ~~i~~~L~~~~~ 156 (200)
..+.+.+.....
T Consensus 156 Fyi~LYl~~f~~ 167 (218)
T KOG3240 156 FYILLYLLAFSQ 167 (218)
T ss_pred HHHHHHHHHCCC
T ss_conf 999999998278
No 8
>COG1183 PssA Phosphatidylserine synthase [Lipid metabolism]
Probab=99.48 E-value=2.5e-12 Score=89.27 Aligned_cols=73 Identities=32% Similarity=0.342 Sum_probs=59.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 86000164799999999999999999852445545421479999999999999986649999971871256888998998
Q gi|254780600|r 2 ASRSYNIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYLARVWNQTSNIGRMLDPIAD 81 (200)
Q Consensus 2 ~~~~~~lpN~lT~~Ri~l~p~~~~~~~~~~~~~~~~~~~~~~~a~~lf~~a~~tD~lDG~iAR~~n~~S~~G~~lDp~aD 81 (200)
.++...+||.+|.+-+++.-.-+..-..+ ....|.....+|.+-|.+||++||+.|.+|++|+.+|++||
T Consensus 5 ~~~~~~~pn~iT~~~~~~G~~sI~~a~~~----------~~~~a~~~i~lA~i~DglDG~VAR~~~~~s~~G~~lDSLaD 74 (234)
T COG1183 5 IKRLYLLPNLITALGLFLGLLSIVAALEG----------RFEAALLLILLALILDGLDGRVARKLNAKSAFGAELDSLAD 74 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 55688752599999999999999999716----------79999999999999806531998760786168887757988
Q ss_pred HHH
Q ss_conf 876
Q gi|254780600|r 82 KLL 84 (200)
Q Consensus 82 ki~ 84 (200)
-+-
T Consensus 75 ~Vs 77 (234)
T COG1183 75 LVS 77 (234)
T ss_pred HHH
T ss_conf 988
No 9
>PTZ00307 ethanolamine phosphotransferase; Provisional
Probab=99.46 E-value=2.8e-12 Score=89.00 Aligned_cols=139 Identities=19% Similarity=0.217 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 016479999999999--999999985244554542147999999999999998664999997187125688899899887
Q gi|254780600|r 6 YNIPNMLTYGRILVV--PLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYLARVWNQTSNIGRMLDPIADKL 83 (200)
Q Consensus 6 ~~lpN~lT~~Ri~l~--p~~~~~~~~~~~~~~~~~~~~~~~a~~lf~~a~~tD~lDG~iAR~~n~~S~~G~~lDp~aDki 83 (200)
+--||.+|+.-+... -.+...++.+...+..+.+.+...|+.+|.+..+ |.+||+.|||.|+.|++|+++|+-+|.+
T Consensus 60 w~APN~iTl~G~~~~~~~~~~~~~~~~~~~~~~P~W~~~~~a~~lf~Yqtl-D~~DGkqARRTg~sspLGeLFDHG~Ds~ 138 (417)
T PTZ00307 60 TVAPNCITFTGFLIGMSSAALLLYFYFFEEGVYPSWVLYYAAFALFAYQTL-DAIDGKQARRTGTGSPLGELFDHGCDAF 138 (417)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH-HHCCCHHHHHCCCCCCCHHHHHCCCHHH
T ss_conf 557279999999999999999875264445789746999999999999864-3114287863578897177662450278
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHH--HHHHHHHHHHHHH
Q ss_conf 6554678988643310474112345423455433456788520-6666302568899--9999999999996
Q gi|254780600|r 84 LISSVLLLMTADGTINRYSIWAAITILCREILVSGLREYLAEL-KVSVPVTRIARFK--TGIQMISIGFLLA 152 (200)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~w~~ilii~Rei~i~~lr~~~~~~-~~~i~~~~~GK~k--T~~q~~~i~~~L~ 152 (200)
......+..+. ....-+++...... ++..-.++++. ...-..-.+|..+ |..|++..+..+.
T Consensus 139 ~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~fy~~~WEeYhTg~l~l~~~nGptEg~l~~~~v~l~ 203 (417)
T PTZ00307 139 LTPFVLLNVSL--ATYMTPVERFWLST-----ISSMSLFTAIWEQFSTGTFDLGYVNGPTEGIILNCVLFIV 203 (417)
T ss_pred HHHHHHHHHHH--HHCCCCHHHHHHHH-----HHHHHHHHHHHHHEEECEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 88999999999--97488479999999-----9999999865751060359706868842899999999999
No 10
>TIGR00473 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase; InterPro: IPR004533 This enzyme, CDP-diacylglycerol--serine O-phosphatidyltransferase, is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine = CMP + L-1-phosphatidylserine. Members of this family do not bear any significant sequence similarity to the corresponding Escherichia coli protein.; GO: 0003882 CDP-diacylglycerol-serine O-phosphatidyltransferase activity, 0008654 phospholipid biosynthetic process, 0046341 CDP-diacylglycerol metabolic process, 0016020 membrane.
Probab=99.06 E-value=7.1e-09 Score=69.65 Aligned_cols=108 Identities=22% Similarity=0.203 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 799999999999999866499999718--7125688899899887655--467898864331047411234542345543
Q gi|254780600|r 41 MRWIALSLFTIASITDFFDGYLARVWN--QTSNIGRMLDPIADKLLIS--SVLLLMTADGTINRYSIWAAITILCREILV 116 (200)
Q Consensus 41 ~~~~a~~lf~~a~~tD~lDG~iAR~~n--~~S~~G~~lDp~aDki~~~--~~~~~l~~~~~~~~~~~w~~ilii~Rei~i 116 (200)
+..-|..++.++.+.|.|||++|||.| .+|+||+=||++||-+--. .+.+.....+. .++.-.. ++ +--+.+
T Consensus 26 yv~~a~~li~ls~~~D~LDG~vARktnri~~S~fG~ELDSLAD~vsFGVAPa~l~y~~~~y--~f~~~~~-~~-~~~f~~ 101 (174)
T TIGR00473 26 YVVEACLLILLSMIFDFLDGRVARKTNRITVSDFGKELDSLADVVSFGVAPALLAYSVALY--NFEAILI-LV-AALFVV 101 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HH-HHHHHH
T ss_conf 9999999999999841015678886356432556641134778899888999999998862--2246789-99-999999
Q ss_pred HHHHHHHHHCCCCC----CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34567885206666----3025688999999999999996
Q gi|254780600|r 117 SGLREYLAELKVSV----PVTRIARFKTGIQMISIGFLLA 152 (200)
Q Consensus 117 ~~lr~~~~~~~~~i----~~~~~GK~kT~~q~~~i~~~L~ 152 (200)
.....++++-++.. +-|..|+=+=+.=+....+...
T Consensus 102 lcG~lRLaRFNv~~~~~~~~~FiG~Pip~~al~~~~~~~l 141 (174)
T TIGR00473 102 LCGILRLARFNVLTVKLPKDSFIGLPIPVAALLLVSLVLL 141 (174)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 9999988873333578997642675033458999999870
No 11
>COG5050 EPT1 sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases [Lipid metabolism]
Probab=99.03 E-value=1e-09 Score=74.43 Aligned_cols=87 Identities=20% Similarity=0.279 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 016479999999999-99999998524455454-2147999999999999998664999997187125688899899887
Q gi|254780600|r 6 YNIPNMLTYGRILVV-PLIVLCFFIQEIGSFTS-PNLMRWIALSLFTIASITDFFDGYLARVWNQTSNIGRMLDPIADKL 83 (200)
Q Consensus 6 ~~lpN~lT~~Ri~l~-p~~~~~~~~~~~~~~~~-~~~~~~~a~~lf~~a~~tD~lDG~iAR~~n~~S~~G~~lDp~aDki 83 (200)
+--||++|+..+... .-+...++.+...+... .+.+...++++|++... |.+||.-|||.+|.|++|+++|+-.|.+
T Consensus 44 ~mAPNliTL~Gl~fiv~nvlt~l~ydp~~~~~~~~w~yfs~alg~FlYqtf-D~lDG~qARRTGt~spLGeLFDH~vDsi 122 (384)
T COG5050 44 WMAPNLITLCGLIFIVANVLTTLYYDPCLSVDGPRWTYFSYALGLFLYQTF-DALDGRQARRTGTGSPLGELFDHGVDSI 122 (384)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCCHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 138339999879999999999995052247786245899999999988633-5556476521789997188875128888
Q ss_pred HHHHHHHHHH
Q ss_conf 6554678988
Q gi|254780600|r 84 LISSVLLLMT 93 (200)
Q Consensus 84 ~~~~~~~~l~ 93 (200)
-..-..+.++
T Consensus 123 nt~l~~i~~~ 132 (384)
T COG5050 123 NTTLSAIIFV 132 (384)
T ss_pred HHHHHHHHHH
T ss_conf 8789999999
No 12
>KOG1718 consensus
Probab=62.44 E-value=4 Score=19.92 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 712568889989988765
Q gi|254780600|r 68 QTSNIGRMLDPIADKLLI 85 (200)
Q Consensus 68 ~~S~~G~~lDp~aDki~~ 85 (200)
-.++++..+||+|||+--
T Consensus 72 p~~~l~~hfD~vAD~I~~ 89 (198)
T KOG1718 72 PQARLYDHFDPVADKIHS 89 (198)
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 866266650278889889
No 13
>TIGR02121 Na_Pro_sym sodium/proline symporter; InterPro: IPR011851 This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. ; GO: 0005298 proline:sodium symporter activity, 0031402 sodium ion binding, 0006814 sodium ion transport, 0015824 proline transport, 0016021 integral to membrane.
Probab=55.80 E-value=15 Score=16.70 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=19.5
Q ss_pred CCCCCCHHHHHH--------HHHHHHHHHHHHHH
Q ss_conf 860001647999--------99999999999999
Q gi|254780600|r 2 ASRSYNIPNMLT--------YGRILVVPLIVLCF 27 (200)
Q Consensus 2 ~~~~~~lpN~lT--------~~Ri~l~p~~~~~~ 27 (200)
++...|||..++ ++|++.+-+|+.++
T Consensus 101 ~~dsiTlPdFf~~Rf~D~s~~LrI~SALiIlvFF 134 (517)
T TIGR02121 101 AKDSITLPDFFENRFEDKSKVLRIVSALIILVFF 134 (517)
T ss_pred HCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 4166667156513211246255789999999999
No 14
>TIGR00445 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; InterPro: IPR003524 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (mraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis. It catalyzes the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. It is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologs of mraY have been found in the archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress).; GO: 0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity, 0009252 peptidoglycan biosynthetic process, 0016020 membrane.
Probab=54.03 E-value=8.8 Score=17.95 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=16.2
Q ss_pred CCH-HHHHHHHHHHHHH------HHHHHHHHHH
Q ss_conf 214-7999999999999------9986649999
Q gi|254780600|r 38 PNL-MRWIALSLFTIAS------ITDFFDGYLA 63 (200)
Q Consensus 38 ~~~-~~~~a~~lf~~a~------~tD~lDG~iA 63 (200)
+-+ +.++.+..|++-+ +||.+||-.+
T Consensus 139 ~LGtl~y~~l~~F~lv~~SNAvNLTDGLDGLA~ 171 (336)
T TIGR00445 139 DLGTLLYILLALFVLVGTSNAVNLTDGLDGLAI 171 (336)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 325799999999998860453100000138899
No 15
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=37.89 E-value=8.5 Score=18.05 Aligned_cols=75 Identities=20% Similarity=0.143 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHH------HHHHHH----HCCCCCHHHHHHHHHH
Q ss_conf 99999999999866499999718712568889989988765-546789------886433----1047411234542345
Q gi|254780600|r 45 ALSLFTIASITDFFDGYLARVWNQTSNIGRMLDPIADKLLI-SSVLLL------MTADGT----INRYSIWAAITILCRE 113 (200)
Q Consensus 45 a~~lf~~a~~tD~lDG~iAR~~n~~S~~G~~lDp~aDki~~-~~~~~~------l~~~~~----~~~~~~w~~ilii~Re 113 (200)
.=+||+.+|..|.||--+-+|.++.|..|=--+--+++-=- ...++. |.-+|+ ++|.|+....==+..|
T Consensus 281 s~ILFICGGAF~GL~~iI~~R~~~~~~iGF~~~~~~~~~~~~~~~~L~~v~~~DL~kFGLIPEfIGRLPV~a~L~~L~~e 360 (452)
T TIGR00382 281 SNILFICGGAFVGLEKIIKKRTEKKSSIGFGAEVKKKSKEKSEEELLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEE 360 (452)
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCEECCCCCCHH
T ss_conf 64001105434448999988745553335455210045787899999751711122105551011053402027878878
Q ss_pred HHHHHH
Q ss_conf 543345
Q gi|254780600|r 114 ILVSGL 119 (200)
Q Consensus 114 i~i~~l 119 (200)
-+|.-+
T Consensus 361 AL~~IL 366 (452)
T TIGR00382 361 ALIAIL 366 (452)
T ss_pred HHHHHH
T ss_conf 999985
No 16
>pfam01733 Nucleoside_tran Nucleoside transporter. This is a family of nucleoside transporters. In mammalian cells nucleoside transporters transport nucleoside across the plasma membrane and are essential for nucleotide synthesis via the salvage pathways for cells that lack their own de novo synthesis pathways. Also in this family is mouse and human nucleolar protein HNP36, a protein of unknown function; although it has been hypothesized to be a plasma membrane nucleoside transporter.
Probab=33.79 E-value=33 Score=14.67 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999996
Q gi|254780600|r 141 GIQMISIGFLLA 152 (200)
Q Consensus 141 ~~q~~~i~~~L~ 152 (200)
....+.+.+.++
T Consensus 216 ~~R~~FiPlf~l 227 (305)
T pfam01733 216 ILRLLFIPLFLL 227 (305)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 17
>TIGR01922 purO_arch IMP cyclohydrolase; InterPro: IPR010191 This entry represents IMP cyclohydrolase, the final step in the biosynthesis of inosine monophosphate (IMP) in archaea . In bacteria this step is catalysed by a bifunctional enzyme (purH).; GO: 0003937 IMP cyclohydrolase activity, 0006164 purine nucleotide biosynthetic process, 0006188 IMP biosynthetic process.
Probab=29.37 E-value=12 Score=17.28 Aligned_cols=11 Identities=73% Similarity=1.041 Sum_probs=9.8
Q ss_pred HHHHHHHHHHH
Q ss_conf 88899899887
Q gi|254780600|r 73 GRMLDPIADKL 83 (200)
Q Consensus 73 G~~lDp~aDki 83 (200)
|+.-||+|||+
T Consensus 76 G~htD~IAdKl 86 (209)
T TIGR01922 76 GSHTDPIADKL 86 (209)
T ss_pred CCCCCCHHHHH
T ss_conf 87226113455
No 18
>TIGR01512 ATPase-IB2_Cd cadmium-translocating P-type ATPase; InterPro: IPR006404 These sequences describe the P-type ATPase primarily responsible for translocating cadmium ions (and other closely-related divalent heavy metals such as cobalt, mercury, lead and zinc) across biological membranes. These transporters are found in prokaryotes and plants. Experimentally characterised members include P37617 from SWISSPROT from Escherichia coli, Q10866 from SWISSPROT from Mycobacterium tuberculosis and Q59998 from SWISSPROT from Synechocystis PCC6803. The cadmium P-type ATPases have been characterised as Type IB based on a phylogenetic analysis which combines the copper-translocating ATPases with the cadmium-translocating species . This family and that describing the copper-ATPases (IPR006403 from INTERPRO) are well separated, and thus the copper-ATPases can be typed as IB1 and the cadmium-ATPases as IB2. ; GO: 0005524 ATP binding, 0016818 hydrolase activity acting on acid anhydrides in phosphorus-containing anhydrides, 0046872 metal ion binding, 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0016020 membrane.
Probab=26.90 E-value=44 Score=13.98 Aligned_cols=76 Identities=11% Similarity=0.049 Sum_probs=40.2
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH--------HHHHHHHHHHHHHHHHHCCCCCCCH---
Q ss_conf 71871256888998998876554678988643310474112345--------4234554334567885206666302---
Q gi|254780600|r 65 VWNQTSNIGRMLDPIADKLLISSVLLLMTADGTINRYSIWAAIT--------ILCREILVSGLREYLAELKVSVPVT--- 133 (200)
Q Consensus 65 ~~n~~S~~G~~lDp~aDki~~~~~~~~l~~~~~~~~~~~w~~il--------ii~Rei~i~~lr~~~~~~~~~i~~~--- 133 (200)
..+..++..++.|-++++......+++.+..-. +..+.-+.++ +++=-....+.-..++++|+.++-.
T Consensus 150 A~~~k~~~~r~~d~~a~~y~~~~l~~a~~~~~~-~~~~~al~~Lv~a~PCAL~iS~P~A~~~ai~~AAr~GiLiKgg~~L 228 (494)
T TIGR01512 150 AQSNKAKTQRFIDRFARYYTPLVLLIALLVALV-PGSLTALVLLVVASPCALVISTPVAYLAAISAAARHGILIKGGAAL 228 (494)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEECHHHH
T ss_conf 730680678999986103799999999999998-4158987788776151789997899999986536375588464999
Q ss_pred -HHHHHHHH
Q ss_conf -56889999
Q gi|254780600|r 134 -RIARFKTG 141 (200)
Q Consensus 134 -~~GK~kT~ 141 (200)
.+||+||+
T Consensus 229 E~L~~~~tv 237 (494)
T TIGR01512 229 EKLAKVKTV 237 (494)
T ss_pred HHHHCCCEE
T ss_conf 754085479
No 19
>pfam06055 ExoD Exopolysaccharide synthesis, ExoD. Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion.
Probab=26.52 E-value=45 Score=13.94 Aligned_cols=32 Identities=19% Similarity=0.413 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 99986649999971871256888998998876
Q gi|254780600|r 53 SITDFFDGYLARVWNQTSNIGRMLDPIADKLL 84 (200)
Q Consensus 53 ~~tD~lDG~iAR~~n~~S~~G~~lDp~aDki~ 84 (200)
.+||.+|....+..+..-++|.++|.+-|+-+
T Consensus 2 ~ls~~L~~l~~~~~~~~vtv~~ll~~lg~r~f 33 (187)
T pfam06055 2 SLSDILDRLAEAAEEGEVTLGDVLDALGERSF 33 (187)
T ss_pred CHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCH
T ss_conf 78999999997377897569999998643122
No 20
>TIGR00680 kdpA K+-transporting ATPase, A subunit; InterPro: IPR004623 Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilize the complex. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolyzing (energy providing) subunit .; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016021 integral to membrane.
Probab=26.34 E-value=45 Score=13.92 Aligned_cols=46 Identities=26% Similarity=0.405 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHH-HHHHHHHHHHHHH
Q ss_conf 799999999999999866499999718712-568-8899899887655
Q gi|254780600|r 41 MRWIALSLFTIASITDFFDGYLARVWNQTS-NIG-RMLDPIADKLLIS 86 (200)
Q Consensus 41 ~~~~a~~lf~~a~~tD~lDG~iAR~~n~~S-~~G-~~lDp~aDki~~~ 86 (200)
+..+|.++.++-..--.|=+|+||-++-++ +.| |..-|+=--++..
T Consensus 6 flqiA~~lavL~~tAp~LG~ylAr~~~d~~k~pgD~~~gP~Ervif~~ 53 (571)
T TIGR00680 6 FLQIALLLAVLLVTAPLLGRYLARVFLDESKKPGDKVAGPVERVIFRA 53 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 899999999999973334567888755788887522122078888744
No 21
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=24.59 E-value=49 Score=13.73 Aligned_cols=69 Identities=10% Similarity=-0.081 Sum_probs=30.6
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHC
Q ss_conf 206666302568899999999999999642001110389999999999999999999999999999951015415
Q gi|254780600|r 125 ELKVSVPVTRIARFKTGIQMISIGFLLAGPACENQTSYITGTGIILLWISALLTIYSGYDYFRVGIKHIDSEDKQ 199 (200)
Q Consensus 125 ~~~~~i~~~~~GK~kT~~q~~~i~~~L~~~~~~~~~~~~~~~~~~~~~ia~~lti~Sg~~Y~~~~~~~~~~~~~~ 199 (200)
+.|.+.-|...|+-+|..|......++........ .....+ +.-.......+.-++....+..|++++|
T Consensus 185 ~~Gv~tlPv~~G~~~t~~~i~~~~~l~~~~~~lp~--~~g~~g----~~Yl~~~~~~~~~~l~~~~~l~~~~~~~ 253 (280)
T PRK09573 185 KEGVITLPIKYGIKKSIYIAKILLVLLIVLSPLPY--LLGIFG----IYYLIVVVICDLLFILSIIILLRNPSKE 253 (280)
T ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHCH----HHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 86994357632789999999999999999999999--997650----9999999999999999999998589899
Done!