Query gi|254780600|ref|YP_003065013.1| CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 200
No_of_seqs 133 out of 2596
Neff 7.7
Searched_HMMs 33803
Date Wed Jun 1 18:01:30 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780600.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3ecq_A Protein SPR0328, endo- 12.9 67 0.002 12.6 0.7 18 56-73 269-286 (286)
2 >3hrd_C Nicotinate dehydrogena 12.2 59 0.0018 12.9 0.2 14 54-67 33-46 (63)
3 >3gd0_A Laminaripentaose-produ 9.9 75 0.0022 12.3 0.1 14 57-70 2-15 (56)
4 >1e3d_B [NIFE] hydrogenase lar 6.4 1.5E+02 0.0043 10.7 0.3 32 46-81 23-54 (152)
5 >2r4f_A 3-hydroxy-3-methylglut 5.4 1E+02 0.0031 11.5 -0.9 24 54-77 18-46 (105)
6 >3bz1_K PSII-K, photosystem II 5.4 1.7E+02 0.005 10.3 1.7 19 74-92 7-25 (37)
7 >3c2g_A SYS-1 protein; beta-ca 4.9 1.8E+02 0.0054 10.1 1.2 60 92-153 8-68 (117)
8 >3ge3_A Toluene-4-monooxygenas 4.4 2E+02 0.006 9.9 1.9 16 70-85 2-17 (50)
9 >1pw4_A Glycerol-3-phosphate t 4.4 2E+02 0.0061 9.8 4.5 25 46-70 69-93 (229)
10 >2ntk_A IMP cyclohydrolase; al 4.3 2.1E+02 0.0063 9.7 1.0 11 73-83 94-104 (222)
No 1
>>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted (beta/alpha)8 (TIM) barrel glycoside hydrolase domain, cell WALL; 2.90A {Streptococcus pneumoniae} (A:281-566)
Probab=12.94 E-value=67 Score=12.57 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=12.4
Q ss_pred HHHHHHHHHHCCCCHHHH
Q ss_conf 866499999718712568
Q gi|254780600|r 56 DFFDGYLARVWNQTSNIG 73 (200)
Q Consensus 56 D~lDG~iAR~~n~~S~~G 73 (200)
||=||.||.|-.+..+.|
T Consensus 269 DWQDGAIA~RdImn~P~G 286 (286)
T 3ecq_A 269 DWQDGAIAYRSIXNNPQG 286 (286)
T ss_dssp SHHHHHHHHTTTSCCCTT
T ss_pred CCCHHHHHHHHHCCCCCC
T ss_conf 643116788875368885
No 2
>>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} (C:58-74,C:133-178)
Probab=12.23 E-value=59 Score=12.88 Aligned_cols=14 Identities=50% Similarity=0.686 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99866499999718
Q gi|254780600|r 54 ITDFFDGYLARVWN 67 (200)
Q Consensus 54 ~tD~lDG~iAR~~n 67 (200)
+||++||-=-++.|
T Consensus 33 ltdffdgegfkrrn 46 (63)
T 3hrd_C 33 LTDFFDGEGFKRRN 46 (63)
T ss_dssp HHHHHHCCSSSSSS
T ss_pred EHHEECCCCCCCCC
T ss_conf 22201467633344
No 3
>>3gd0_A Laminaripentaose-producing beta-1,3-guluase (lphase); glycoside hydrolase, laminaripentaose-producing beta-1,3- glucnase; 1.62A {Streptomyces matensis} PDB: 3gd9_A* (A:208-263)
Probab=9.89 E-value=75 Score=12.29 Aligned_cols=14 Identities=43% Similarity=1.047 Sum_probs=9.8
Q ss_pred HHHHHHHHHCCCCH
Q ss_conf 66499999718712
Q gi|254780600|r 57 FFDGYLARVWNQTS 70 (200)
Q Consensus 57 ~lDG~iAR~~n~~S 70 (200)
.+|+|+.|-||.-|
T Consensus 2 ~mD~Yi~rvW~~Y~ 15 (56)
T 3gd0_A 2 VMDDYINRVWNKYT 15 (56)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC
T ss_conf 57899999999717
No 4
>>1e3d_B [NIFE] hydrogenase large subunit; molecular modelling, electron transfer; HET: FSX; 1.8A {Desulfovibrio desulfuricans} (B:94-128,B:239-279,B:375-450)
Probab=6.40 E-value=1.5e+02 Score=10.67 Aligned_cols=32 Identities=13% Similarity=0.278 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999999999986649999971871256888998998
Q gi|254780600|r 46 LSLFTIASITDFFDGYLARVWNQTSNIGRMLDPIAD 81 (200)
Q Consensus 46 ~~lf~~a~~tD~lDG~iAR~~n~~S~~G~~lDp~aD 81 (200)
.-.+.+++. ||+|+-=.-+.|++.+ +++-..|
T Consensus 23 ~Hfy~L~ap-D~v~~~~~~~~~~~~~---~~~~~~~ 54 (152)
T 1e3d_B 23 VHFYHLHAL-DFVDALTPERIKQFRE---LYVKARA 54 (152)
T ss_dssp HHHHHTTGG-GTCCGGSHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHCCC-HHCCCCCHHHHHHHHH---HHHHHHH
T ss_conf 988774053-0024899999999999---9999999
No 5
>>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ... (A:154-258)
Probab=5.41 E-value=1e+02 Score=11.49 Aligned_cols=24 Identities=13% Similarity=0.451 Sum_probs=16.9
Q ss_pred HHHHHH-----HHHHHHCCCCHHHHHHHH
Q ss_conf 998664-----999997187125688899
Q gi|254780600|r 54 ITDFFD-----GYLARVWNQTSNIGRMLD 77 (200)
Q Consensus 54 ~tD~lD-----G~iAR~~n~~S~~G~~lD 77 (200)
+-+|++ ..+.+..++.|++|++.|
T Consensus 18 f~~wi~~~e~~~~ik~~~~stSr~~rL~~ 46 (105)
T 2r4f_A 18 VKAWLETSEGFAVIKEAFDSTSRFARLQK 46 (105)
T ss_dssp HHHHHHSHHHHHHHHHHHHTTCSSCEECC
T ss_pred HHHHHHCHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 99987463568999875425444224404
No 6
>>3bz1_K PSII-K, photosystem II reaction center protein K; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1izl_K* 1s5l_K* 2axt_K* 3bz2_K* 3a0b_K* 3a0h_K* (K:)
Probab=5.37 E-value=1.7e+02 Score=10.29 Aligned_cols=19 Identities=37% Similarity=0.670 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 8899899887655467898
Q gi|254780600|r 74 RMLDPIADKLLISSVLLLM 92 (200)
Q Consensus 74 ~~lDp~aDki~~~~~~~~l 92 (200)
+.+||+.|-.=++..+..+
T Consensus 7 a~f~pivdvmPvIPv~f~l 25 (37)
T 3bz1_K 7 AIFDPLVDVLPVIPVLFLA 25 (37)
T ss_dssp GGGHHHHTTGGGHHHHHHH
T ss_pred HHHCHHHHHHCCHHHHHHH
T ss_conf 4221088872209999999
No 7
>>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* (A:201-317)
Probab=4.92 E-value=1.8e+02 Score=10.12 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=21.7
Q ss_pred HHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 886433104741123-45423455433456788520666630256889999999999999964
Q gi|254780600|r 92 MTADGTINRYSIWAA-ITILCREILVSGLREYLAELKVSVPVTRIARFKTGIQMISIGFLLAG 153 (200)
Q Consensus 92 l~~~~~~~~~~~w~~-ilii~Rei~i~~lr~~~~~~~~~i~~~~~GK~kT~~q~~~i~~~L~~ 153 (200)
+.+...-+.-|.... +++....+.+.+.|....+.-...|-+ -....-.|.+.=.+-+++
T Consensus 8 ~IW~~~~~~~~~PP~~il~~L~~i~~~S~~~l~~~~~~~~P~~--~E~s~L~QVv~RsFDLL~ 68 (117)
T 3c2g_A 8 FIWNNNPHDQPPPPTGLIIKLNAVXIGSYRLIAGQNPETLPQN--PELAHLIQVIIRTFDLLG 68 (117)
T ss_dssp HHHTTCCTTSCCCTTSHHHHHHHHHHHHHHHHTTCCGGGGGGC--HHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC--HHHHHHHHHHHHHHHHHH
T ss_conf 4457883127999802789988888603887647982558998--889999999998889988
No 8
>>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A (A:366-415)
Probab=4.43 E-value=2e+02 Score=9.86 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 2568889989988765
Q gi|254780600|r 70 SNIGRMLDPIADKLLI 85 (200)
Q Consensus 70 S~~G~~lDp~aDki~~ 85 (200)
.+||+..|-+.|-+.-
T Consensus 2 ~~~G~~WDvi~~Nv~~ 17 (50)
T 3ge3_A 2 KRWGRCWDVITENVLN 17 (50)
T ss_dssp GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 7772899999985415
No 9
>>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} (A:1-229)
Probab=4.37 E-value=2e+02 Score=9.82 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 9999999999866499999718712
Q gi|254780600|r 46 LSLFTIASITDFFDGYLARVWNQTS 70 (200)
Q Consensus 46 ~~lf~~a~~tD~lDG~iAR~~n~~S 70 (200)
....+...+...+=|+++.|++.+.
T Consensus 69 ~~~~~~~~~~~~~~g~~~d~~g~r~ 93 (229)
T 1pw4_A 69 SGISIAYGFSKFIMGSVSDRSNPRV 93 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 9999999999999999999819789
No 10
>>2ntk_A IMP cyclohydrolase; alpha-beta-BETA-alpha NTN hydrolase fold; HET: IMP; 2.03A {Methanothermobacterthermautotrophicus} (A:)
Probab=4.26 E-value=2.1e+02 Score=9.74 Aligned_cols=11 Identities=55% Similarity=0.748 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q ss_conf 88899899887
Q gi|254780600|r 73 GRMLDPIADKL 83 (200)
Q Consensus 73 G~~lDp~aDki 83 (200)
|..-||++||+
T Consensus 94 GdqTDtI~ekl 104 (222)
T 2ntk_A 94 GSHTDTIADKV 104 (222)
T ss_dssp STHHHHHHHHH
T ss_pred CCCCHHHHHHH
T ss_conf 97307899998
Done!