RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780600|ref|YP_003065013.1| CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase [Candidatus Liberibacter asiaticus str. psy62] (200 letters) >gnl|CDD|30904 COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]. Length = 192 Score = 116 bits (292), Expect = 4e-27 Identities = 74/193 (38%), Positives = 106/193 (54%), Gaps = 15/193 (7%) Query: 7 NIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYLARVW 66 N PN LT RI ++PL L + + +AL LF +A++TD DGYLAR W Sbjct: 13 NTPNQLTLLRIFLIPLFALLLLL-------PGLGLLLLALVLFLLAALTDALDGYLARKW 65 Query: 67 NQTSNIGRMLDPIADKLLISSVLLLMTADGTINRYSIWAAITILCREILVSGLREYLAEL 126 Q S G LDP+ADKLL +++LL + A G ++ +W AI IL REILVS LR A L Sbjct: 66 GQVSRFGAFLDPVADKLLDAALLLGLVALGPVS--PLWLAILILAREILVSYLRALAASL 123 Query: 127 --KVSVPVTRIARFKTGIQMISIGFLLAGPACENQTSYITGTGIILLWISALLTIYSGYD 184 + V + + KT +QM+++ LL G T G++LL +A+LT+ +G Sbjct: 124 GGRDYVGASGRGKRKTILQMVALLLLLLGLLL---TPLWLLLGLVLLA-AAVLTLITGIQ 179 Query: 185 YFRVGIKHIDSED 197 Y +K + S+D Sbjct: 180 YLLAALKSLKSKD 192 >gnl|CDD|36830 KOG1617, KOG1617, KOG1617, CDP-alcohol phosphatidyltransferase/Phosphatidylglycerol-phosphate synthase [Lipid transport and metabolism]. Length = 243 Score = 86.2 bits (213), Expect = 6e-18 Identities = 59/188 (31%), Positives = 80/188 (42%), Gaps = 20/188 (10%) Query: 3 SRSYNIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYL 62 S+ IPNMLT RI PLI I E A LF +A ITD DGY+ Sbjct: 65 SKVLTIPNMLTLARIAATPLIGY-LIIDE---------NFTAAFGLFAVAGITDLLDGYI 114 Query: 63 ARVWNQTSNIGRMLDPIADKLLISSVLLLMTADGTINRYSIWAAITILCREILVSGLREY 122 AR S G +LDP+ADK+LI+ + L M I + A I+ R++L+ Y Sbjct: 115 ARKMRLGSIAGSVLDPLADKVLITCLTLCMVYADLI---PVPLASIIIGRDVLLVAGAFY 171 Query: 123 LAELKVSVPVTRIARFKTGIQMISIGFLLAGPACENQTSYITGTGIILLWIS-----ALL 177 L + +P T +A F + + N +T LL+ A Sbjct: 172 LRYQNLKLPYT-LAVF-FNPWKAATQLTPLLASKVNTVFQLTLVAAGLLYPLFGYSDATT 229 Query: 178 TIYSGYDY 185 T+YS Y Y Sbjct: 230 TVYSTYSY 237 >gnl|CDD|144601 pfam01066, CDP-OH_P_transf, CDP-alcohol phosphatidyltransferase. All of these members have the ability to catalyse the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond. Length = 96 Score = 65.7 bits (161), Expect = 7e-12 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 10/85 (11%) Query: 6 YNIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYLARV 65 PN++T R+++ L L + + +A L +A + D DG LAR Sbjct: 2 GITPNLITLLRLILGLLAALLLLLGQ----------YLLAALLLLLAGLLDGLDGKLARR 51 Query: 66 WNQTSNIGRMLDPIADKLLISSVLL 90 Q+S +G +LD +AD+L ++LL Sbjct: 52 TGQSSPLGALLDSVADRLSDVALLL 76 >gnl|CDD|38450 KOG3240, KOG3240, KOG3240, Phosphatidylinositol synthase [Lipid transport and metabolism]. Length = 218 Score = 52.6 bits (126), Expect = 8e-08 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 13/104 (12%) Query: 6 YNIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYLARV 65 IPN++ Y RI+ L +L F++ ++P L+ ++S+ D FDG+ AR Sbjct: 13 LYIPNLIGYMRIV---LAILSFYV----MSSNPTTFSV----LYLLSSLLDAFDGWAARK 61 Query: 66 WNQTSNIGRMLDPIADKLLISSVLLLMTADGTINRYSIWAAITI 109 NQ S G MLD + D+ S+ LL+ Y ++ +++ Sbjct: 62 LNQVSRFGAMLDMVTDR--CSTACLLVFLCQFYPPYLVFFQLSM 103 >gnl|CDD|31376 COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism]. Length = 234 Score = 32.5 bits (74), Expect = 0.070 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 10/81 (12%) Query: 1 MASRSYNIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDG 60 R Y +PN++T + + L + + AL L +A I D DG Sbjct: 4 RIKRLYLLPNLITALGLFLGLLSI----------VAALEGRFEAALLLILLALILDGLDG 53 Query: 61 YLARVWNQTSNIGRMLDPIAD 81 +AR N S G LD +AD Sbjct: 54 RVARKLNAKSAFGAELDSLAD 74 >gnl|CDD|31380 COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]. Length = 248 Score = 27.5 bits (61), Expect = 2.8 Identities = 25/119 (21%), Positives = 40/119 (33%), Gaps = 24/119 (20%) Query: 53 SITDFFDGYLARVWNQTSNIGRMLDPIADKLLISSVLLLMTADGTINRYSIWAAITILCR 112 ++ D L R +GR LD D + LLL+T DG + + Sbjct: 86 TVFDLLPERLPRKKRLFP-VGR-LD--KD----TEGLLLLTNDGELAH-----RLMHPSS 132 Query: 113 EILVSGLREYLAELKVSVPVTRIARFKTGIQ-------MISIGFLLAGPACENQTSYIT 164 E+ +EYL ++ V + + + G+ L P N IT Sbjct: 133 EVE----KEYLVRVEGPVTEEDLEKLRKGVTLDDGETKPAKPASLEKEPGKNNSWLRIT 187 >gnl|CDD|34202 COG4564, COG4564, Signal transduction histidine kinase [Signal transduction mechanisms]. Length = 459 Score = 26.9 bits (59), Expect = 4.3 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Query: 78 PIADKLLISSVLLLMTADGTINRYSIWAAITILCREILV---SGLREYLAELKVSVPVTR 134 P+ K+L+ ++L L+ A +I + T+ REI + + L EL V + Sbjct: 2 PLRAKILLLALLPLLIAILSITAIITHQSKTLAQREIEIFEANMLEAKETELLNLVNLAL 61 Query: 135 IA 136 A Sbjct: 62 SA 63 >gnl|CDD|38820 KOG3614, KOG3614, KOG3614, Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism, Signal transduction mechanisms]. Length = 1381 Score = 26.4 bits (58), Expect = 5.6 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 10/111 (9%) Query: 83 LLISSVLLLMT--ADGTINRYSIWAAITILC---REILVSGLREYLAELKVSVPVTRIAR 137 LL + VLL+ + T+ R+I +S +++V A Sbjct: 807 LLFTYVLLVDFQPSPSMWEWILFAWIFTLFLEEVRQIFISESGLLPQKVRVYF-----AD 861 Query: 138 FKTGIQMISIGFLLAGPACENQTSYITGTGIILLWISALLTIYSGYDYFRV 188 F I +++I L GP +G ++L +L YF V Sbjct: 862 FWNLIDLLAILLFLVGPVLRLLPIDSIYSGRVILCFDFILFTLRLLHYFTV 912 >gnl|CDD|34129 COG4449, COG4449, Predicted protease of the Abi (CAAX) family [General function prediction only]. Length = 827 Score = 26.2 bits (57), Expect = 5.9 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 8/76 (10%) Query: 43 WIALSLFTIASITDFFDGYLARVWNQTSNIGRM--------LDPIADKLLISSVLLLMTA 94 + IA+ F G L Q RM + + ++L+ VLL Sbjct: 677 IVVALYLAIAAALGFTTGLLHWTPTQPDLALRMKSILTVILIPALGEELVFRVVLLPGPG 736 Query: 95 DGTINRYSIWAAITIL 110 +G ++ AA ++ Sbjct: 737 EGRRPWVTLGAATGLV 752 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.327 0.141 0.423 Gapped Lambda K H 0.267 0.0730 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 2,476,433 Number of extensions: 127935 Number of successful extensions: 418 Number of sequences better than 10.0: 1 Number of HSP's gapped: 409 Number of HSP's successfully gapped: 26 Length of query: 200 Length of database: 6,263,737 Length adjustment: 89 Effective length of query: 111 Effective length of database: 4,340,536 Effective search space: 481799496 Effective search space used: 481799496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 55 (25.0 bits)