RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780600|ref|YP_003065013.1|
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
         (200 letters)



>gnl|CDD|30904 COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid
           metabolism].
          Length = 192

 Score =  116 bits (292), Expect = 4e-27
 Identities = 74/193 (38%), Positives = 106/193 (54%), Gaps = 15/193 (7%)

Query: 7   NIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYLARVW 66
           N PN LT  RI ++PL  L   +           +  +AL LF +A++TD  DGYLAR W
Sbjct: 13  NTPNQLTLLRIFLIPLFALLLLL-------PGLGLLLLALVLFLLAALTDALDGYLARKW 65

Query: 67  NQTSNIGRMLDPIADKLLISSVLLLMTADGTINRYSIWAAITILCREILVSGLREYLAEL 126
            Q S  G  LDP+ADKLL +++LL + A G ++   +W AI IL REILVS LR   A L
Sbjct: 66  GQVSRFGAFLDPVADKLLDAALLLGLVALGPVS--PLWLAILILAREILVSYLRALAASL 123

Query: 127 --KVSVPVTRIARFKTGIQMISIGFLLAGPACENQTSYITGTGIILLWISALLTIYSGYD 184
             +  V  +   + KT +QM+++  LL G      T      G++LL  +A+LT+ +G  
Sbjct: 124 GGRDYVGASGRGKRKTILQMVALLLLLLGLLL---TPLWLLLGLVLLA-AAVLTLITGIQ 179

Query: 185 YFRVGIKHIDSED 197
           Y    +K + S+D
Sbjct: 180 YLLAALKSLKSKD 192


>gnl|CDD|36830 KOG1617, KOG1617, KOG1617, CDP-alcohol
           phosphatidyltransferase/Phosphatidylglycerol-phosphate
           synthase [Lipid transport and metabolism].
          Length = 243

 Score = 86.2 bits (213), Expect = 6e-18
 Identities = 59/188 (31%), Positives = 80/188 (42%), Gaps = 20/188 (10%)

Query: 3   SRSYNIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYL 62
           S+   IPNMLT  RI   PLI     I E             A  LF +A ITD  DGY+
Sbjct: 65  SKVLTIPNMLTLARIAATPLIGY-LIIDE---------NFTAAFGLFAVAGITDLLDGYI 114

Query: 63  ARVWNQTSNIGRMLDPIADKLLISSVLLLMTADGTINRYSIWAAITILCREILVSGLREY 122
           AR     S  G +LDP+ADK+LI+ + L M     I    +  A  I+ R++L+     Y
Sbjct: 115 ARKMRLGSIAGSVLDPLADKVLITCLTLCMVYADLI---PVPLASIIIGRDVLLVAGAFY 171

Query: 123 LAELKVSVPVTRIARFKTGIQMISIGFLLAGPACENQTSYITGTGIILLWIS-----ALL 177
           L    + +P T +A F       +        +  N    +T     LL+       A  
Sbjct: 172 LRYQNLKLPYT-LAVF-FNPWKAATQLTPLLASKVNTVFQLTLVAAGLLYPLFGYSDATT 229

Query: 178 TIYSGYDY 185
           T+YS Y Y
Sbjct: 230 TVYSTYSY 237


>gnl|CDD|144601 pfam01066, CDP-OH_P_transf, CDP-alcohol phosphatidyltransferase. 
          All of these members have the ability to catalyse the
          displacement of CMP from a CDP-alcohol by a second
          alcohol with formation of a phosphodiester bond and
          concomitant breaking of a phosphoride anhydride bond.
          Length = 96

 Score = 65.7 bits (161), Expect = 7e-12
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 10/85 (11%)

Query: 6  YNIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYLARV 65
             PN++T  R+++  L  L   + +            +A  L  +A + D  DG LAR 
Sbjct: 2  GITPNLITLLRLILGLLAALLLLLGQ----------YLLAALLLLLAGLLDGLDGKLARR 51

Query: 66 WNQTSNIGRMLDPIADKLLISSVLL 90
            Q+S +G +LD +AD+L   ++LL
Sbjct: 52 TGQSSPLGALLDSVADRLSDVALLL 76


>gnl|CDD|38450 KOG3240, KOG3240, KOG3240, Phosphatidylinositol synthase [Lipid
           transport and metabolism].
          Length = 218

 Score = 52.6 bits (126), Expect = 8e-08
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 13/104 (12%)

Query: 6   YNIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYLARV 65
             IPN++ Y RI+   L +L F++      ++P         L+ ++S+ D FDG+ AR 
Sbjct: 13  LYIPNLIGYMRIV---LAILSFYV----MSSNPTTFSV----LYLLSSLLDAFDGWAARK 61

Query: 66  WNQTSNIGRMLDPIADKLLISSVLLLMTADGTINRYSIWAAITI 109
            NQ S  G MLD + D+   S+  LL+        Y ++  +++
Sbjct: 62  LNQVSRFGAMLDMVTDR--CSTACLLVFLCQFYPPYLVFFQLSM 103


>gnl|CDD|31376 COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].
          Length = 234

 Score = 32.5 bits (74), Expect = 0.070
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 10/81 (12%)

Query: 1  MASRSYNIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDG 60
             R Y +PN++T   + +  L +            +       AL L  +A I D  DG
Sbjct: 4  RIKRLYLLPNLITALGLFLGLLSI----------VAALEGRFEAALLLILLALILDGLDG 53

Query: 61 YLARVWNQTSNIGRMLDPIAD 81
           +AR  N  S  G  LD +AD
Sbjct: 54 RVARKLNAKSAFGAELDSLAD 74


>gnl|CDD|31380 COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and
           related pseudouridylate synthases [Translation,
           ribosomal structure and biogenesis].
          Length = 248

 Score = 27.5 bits (61), Expect = 2.8
 Identities = 25/119 (21%), Positives = 40/119 (33%), Gaps = 24/119 (20%)

Query: 53  SITDFFDGYLARVWNQTSNIGRMLDPIADKLLISSVLLLMTADGTINRYSIWAAITILCR 112
           ++ D     L R       +GR LD   D    +  LLL+T DG +        +     
Sbjct: 86  TVFDLLPERLPRKKRLFP-VGR-LD--KD----TEGLLLLTNDGELAH-----RLMHPSS 132

Query: 113 EILVSGLREYLAELKVSVPVTRIARFKTGIQ-------MISIGFLLAGPACENQTSYIT 164
           E+     +EYL  ++  V    + + + G+              L   P   N    IT
Sbjct: 133 EVE----KEYLVRVEGPVTEEDLEKLRKGVTLDDGETKPAKPASLEKEPGKNNSWLRIT 187


>gnl|CDD|34202 COG4564, COG4564, Signal transduction histidine kinase [Signal
           transduction mechanisms].
          Length = 459

 Score = 26.9 bits (59), Expect = 4.3
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 78  PIADKLLISSVLLLMTADGTINRYSIWAAITILCREILV---SGLREYLAELKVSVPVTR 134
           P+  K+L+ ++L L+ A  +I       + T+  REI +   + L     EL   V +  
Sbjct: 2   PLRAKILLLALLPLLIAILSITAIITHQSKTLAQREIEIFEANMLEAKETELLNLVNLAL 61

Query: 135 IA 136
            A
Sbjct: 62  SA 63


>gnl|CDD|38820 KOG3614, KOG3614, KOG3614, Ca2+/Mg2+-permeable cation channels
           (LTRPC family) [Inorganic ion transport and metabolism,
           Signal transduction mechanisms].
          Length = 1381

 Score = 26.4 bits (58), Expect = 5.6
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 10/111 (9%)

Query: 83  LLISSVLLLMT--ADGTINRYSIWAAITILC---REILVSGLREYLAELKVSVPVTRIAR 137
           LL + VLL+    +             T+     R+I +S       +++V       A 
Sbjct: 807 LLFTYVLLVDFQPSPSMWEWILFAWIFTLFLEEVRQIFISESGLLPQKVRVYF-----AD 861

Query: 138 FKTGIQMISIGFLLAGPACENQTSYITGTGIILLWISALLTIYSGYDYFRV 188
           F   I +++I   L GP           +G ++L    +L       YF V
Sbjct: 862 FWNLIDLLAILLFLVGPVLRLLPIDSIYSGRVILCFDFILFTLRLLHYFTV 912


>gnl|CDD|34129 COG4449, COG4449, Predicted protease of the Abi (CAAX) family
           [General function prediction only].
          Length = 827

 Score = 26.2 bits (57), Expect = 5.9
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 43  WIALSLFTIASITDFFDGYLARVWNQTSNIGRM--------LDPIADKLLISSVLLLMTA 94
            +      IA+   F  G L     Q     RM        +  + ++L+   VLL    
Sbjct: 677 IVVALYLAIAAALGFTTGLLHWTPTQPDLALRMKSILTVILIPALGEELVFRVVLLPGPG 736

Query: 95  DGTINRYSIWAAITIL 110
           +G     ++ AA  ++
Sbjct: 737 EGRRPWVTLGAATGLV 752


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.327    0.141    0.423 

Gapped
Lambda     K      H
   0.267   0.0730    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,476,433
Number of extensions: 127935
Number of successful extensions: 418
Number of sequences better than 10.0: 1
Number of HSP's gapped: 409
Number of HSP's successfully gapped: 26
Length of query: 200
Length of database: 6,263,737
Length adjustment: 89
Effective length of query: 111
Effective length of database: 4,340,536
Effective search space: 481799496
Effective search space used: 481799496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.0 bits)