RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780600|ref|YP_003065013.1|
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
         (200 letters)



>gnl|CDD|161929 TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate
           3-phosphatidyltransferase.  Alternate names:
           phosphatidylglycerophosphate synthase; glycerophosphate
           phosphatidyltransferase; PGP synthase. A number of
           related enzymes are quite similar in both sequence and
           catalytic activity, including Saccharamyces cerevisiae
           YDL142c, now known to be a cardiolipin synthase. There
           may be problems with incorrect transitive annotation of
           near homologs as authentic
           CDP-diacylglycerol--glycerol-3-phosphate
           3-phosphatidyltransferase.
          Length = 182

 Score =  137 bits (347), Expect = 2e-33
 Identities = 70/181 (38%), Positives = 104/181 (57%), Gaps = 11/181 (6%)

Query: 7   NIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYLARVW 66
           NIPN LT  RI+ +P+ +L F    +    SP    +I   LF  A++TD+ DGYLAR W
Sbjct: 2   NIPNWLTLFRIIALPIFILFFLENVLPIQVSP----FIGALLFIFAAVTDWLDGYLARKW 57

Query: 67  NQTSNIGRMLDPIADKLLISSVLLLMTADGTINRYSIWAAITILCREILVSGLREYLAEL 126
           NQ SN G+ LDP+ADK+L+ +VL+++   G       W  I I+ REI++SGLR   AE 
Sbjct: 58  NQVSNFGKFLDPLADKVLVLAVLIILVYHG---YVPAWFVIVIIAREIVISGLRVLAAEK 114

Query: 127 KVSVPVTRIARFKTGIQMISIGF-LLAGPACENQTSYITGTGIILLWISALLTIYSGYDY 185
           KV +    + ++KT  QM++IG  LL     +    +I     +L +I+A  T++S  +Y
Sbjct: 115 KVVIAANWLGKWKTTAQMVAIGALLLWRLTFKIFFEFI---VQLLYYIAAFFTLWSFIEY 171

Query: 186 F 186
            
Sbjct: 172 L 172


>gnl|CDD|182763 PRK10832, PRK10832, phosphatidylglycerophosphate synthetase;
           Provisional.
          Length = 182

 Score =  119 bits (300), Expect = 5e-28
 Identities = 67/186 (36%), Positives = 114/186 (61%), Gaps = 23/186 (12%)

Query: 6   YNIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYLARV 65
           +NIP +LT  R++++P  VL F++     FT    +  +   +F +A++TD+FDG+LAR 
Sbjct: 3   FNIPTLLTLFRVILIPFFVLVFYL----PFTWAPFVCAL---IFCVAAVTDWFDGFLARR 55

Query: 66  WNQTSNIGRMLDPIADKLLISSVLLLMTADGTINRYSIW----AAITILCREILVSGLRE 121
           WNQ++  G  LDP+ADK++++  ++L+T       Y  W     A T++ REI++S LRE
Sbjct: 56  WNQSTRFGAFLDPVADKVMVAIAMVLVT-----EHYHSWWVTLPAATMIAREIIISALRE 110

Query: 122 YLAEL--KVSVPVTRIARFKTGIQMISIGFLLAGPACENQTSYITGTGIILLWISALLTI 179
           ++AEL  + SV V+ I + KT  QM+++ +LL  P       ++   GI L +++A+LT+
Sbjct: 111 WMAELGKRSSVAVSWIGKVKTTAQMVALAWLLWRP-----NIWVEYAGIALFFVAAVLTL 165

Query: 180 YSGYDY 185
           +S   Y
Sbjct: 166 WSMLQY 171


>gnl|CDD|166199 PLN02558, PLN02558, CDP-diacylglycerol-glycerol-3-phosphate/
           3-phosphatidyltransferase.
          Length = 203

 Score = 94.7 bits (235), Expect = 1e-20
 Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 19/197 (9%)

Query: 3   SRSYNIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYL 62
           S+   +P +LT GR+  VPL+V  F++      T+         S+F  A+ITD+ DGYL
Sbjct: 6   SKVLTLPTVLTLGRVAAVPLLVATFYVDSWWGRTATT-------SIFIAAAITDWLDGYL 58

Query: 63  ARVWNQTSNIGRMLDPIADKLLISSVLLLMTA---DGTINRYSIW----AAITILCREIL 115
           AR     +  G  LDP+ADKL++++ L+L+ +   +  +     W     AI I+ REI 
Sbjct: 59  ARKMKLGTAFGAFLDPVADKLMVAAALILLCSRPLEVAVLGEVPWLFTVPAIAIIGREIT 118

Query: 116 VSGLREYLA----ELKVSVPVTRIARFKTGIQMISIGFLLAG-PACENQTSYITGTGIIL 170
           +S +RE+ A    +L  +V V  + ++KT  QMIS+  LLA   +       +  +G+ L
Sbjct: 119 MSAVREWAASQNGKLLEAVAVNNLGKWKTATQMISLTILLASRDSSLEGPGILVPSGVGL 178

Query: 171 LWISALLTIYSGYDYFR 187
           L+ISA L+I+S   Y  
Sbjct: 179 LYISAGLSIWSLAVYMS 195


>gnl|CDD|178391 PLN02794, PLN02794, cardiolipin synthase.
          Length = 341

 Score = 52.2 bits (125), Expect = 9e-08
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 7   NIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYLARVW 66
           N+PN+++  R++  P+I           +   N M   A     I+  +D+ DGY+AR  
Sbjct: 143 NLPNLISISRLVSGPVI----------GWMIVNEMYLSAFVGLAISGASDWLDGYVARKM 192

Query: 67  NQTSNIGRMLDPIADKLLISSVLLLM 92
              S +G  LDP+ADK+LI  V L M
Sbjct: 193 GINSVVGSYLDPLADKVLIGCVALAM 218


>gnl|CDD|161896 TIGR00473, pssA, CDP-diacylglycerol--serine
          O-phosphatidyltransferase.  This enzyme,
          CDP-diacylglycerol--serine O-phosphatidyltransferase,
          is involved in phospholipid biosynthesis catalyzing the
          reaction CDP-diacylglycerol + L-serine = CMP +
          L-1-phosphatidylserine. Members of this family do not
          bear any significant sequence similarity to the
          corresponding E.coli protein.
          Length = 151

 Score = 34.7 bits (80), Expect = 0.015
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 45 ALSLFTIASITDFFDGYLARVWNQTSNIGRMLDPIAD 81
          A  L  ++   DF DG +AR  N+ S+ G+ LD +AD
Sbjct: 23 ACFLILLSMFFDFLDGRVARKTNRVSDFGKELDSLAD 59


>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding
          protein MsbA.  This family consists of a single
          polypeptide chain transporter in the ATP-binding
          cassette (ABC) transporter family, MsbA, which exports
          lipid A. It may also act in multidrug resistance. Lipid
          A, a part of lipopolysaccharide, is found in the outer
          leaflet of the outer membrane of most Gram-negative
          bacteria. Members of this family are restricted to the
          Proteobacteria (although lipid A is more broadly
          distributed) and often are clustered with lipid A
          biosynthesis genes.
          Length = 571

 Score = 27.0 bits (60), Expect = 3.2
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 15 GRILVVPL-IVLCFFIQEIGSFTSPNLMRWIALSL 48
            +  VPL ++    ++ I SF S  L+ W++  +
Sbjct: 51 SVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKV 85


>gnl|CDD|185115 PRK15193, PRK15193, outer membrane usher protein; Provisional.
          Length = 876

 Score = 26.8 bits (59), Expect = 4.0
 Identities = 11/21 (52%), Positives = 17/21 (80%), Gaps = 1/21 (4%)

Query: 94  ADGTINRYSI-WAAITILCRE 113
           ADG+IN YS+ ++A+ +L RE
Sbjct: 349 ADGSINSYSVPYSAVPLLQRE 369


>gnl|CDD|180028 PRK05341, PRK05341, homogentisate 1,2-dioxygenase; Provisional.
          Length = 438

 Score = 26.8 bits (60), Expect = 4.2
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 36  TSPNLMRWIALSLFTIASITDFFDG 60
           T PN +RW  L L      TDF DG
Sbjct: 95  TPPNQLRWDPLPLPAEP--TDFVDG 117


>gnl|CDD|181394 PRK08338, PRK08338, 2-oxoglutarate ferredoxin oxidoreductase
           subunit gamma; Validated.
          Length = 170

 Score = 26.8 bits (59), Expect = 4.3
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 9/42 (21%)

Query: 115 LVSGLREYLAELKVSVPVTRIARFKTG----IQMISIGFLLA 152
           LV   R+Y     +  P TRIA   TG    + M+++G+L+A
Sbjct: 95  LVKPDRDY-----IGAPFTRIAEETTGLALTVNMVALGYLVA 131


>gnl|CDD|179764 PRK04172, pheS, phenylalanyl-tRNA synthetase subunit alpha;
           Provisional.
          Length = 489

 Score = 26.7 bits (60), Expect = 4.4
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 16/57 (28%)

Query: 107 ITILCREILVSG------LREYLAELKVSVPVTRIAR---FKTGIQ-----MISIGF 149
           IT L  E+L SG       R Y   +K   P     +   ++  I      ++ +GF
Sbjct: 197 ITQLTPELLKSGEWKEKEFRPY--NVKAPPPKIYPGKKHPYREFIDEVRDILVEMGF 251


>gnl|CDD|100572 PRK00478, scpA, segregation and condensation protein A/unknown
           domain fusion protein; Provisional.
          Length = 505

 Score = 26.4 bits (58), Expect = 4.6
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 61  YLARVWNQTSNIGRMLDPIADKLLISSVLLLMTADGTINRY 101
           YLA +    +   + ++ I D L+I+S +L + AD  +  +
Sbjct: 198 YLAYINKHMNK--KAIELITDYLVITSEILRIKADNLLPNF 236


>gnl|CDD|179745 PRK04135, PRK04135, cofactor-independent phosphoglycerate mutase;
           Provisional.
          Length = 395

 Score = 26.0 bits (58), Expect = 6.2
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 173 ISALLTIYSGYDYFRVGIKHIDS--ED 197
           I  L   ++ YD+F + +K  DS  ED
Sbjct: 270 IKTLKENWNDYDFFFLHVKKTDSYGED 296


>gnl|CDD|178022 PLN02400, PLN02400, cellulose synthase.
          Length = 1085

 Score = 26.1 bits (57), Expect = 6.6
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 3   SRSYNIPN--MLTYGRILVVPLIVLCFFIQ 30
           SR   IP+  +  Y  ++++ LI+L FF+Q
Sbjct: 265 SRVVPIPSSRLTPYRIVIILRLIILGFFLQ 294


>gnl|CDD|152201 pfam11765, Hyphal_reg_CWP, Hyphally regulated cell wall protein
           N-terminal.  The proteins in this family are all fungal
           and largely annotated as being hyphally regulated cell
           wall proteins, and several are listed as the enzyme
           EC:3.2.1.18. This enzyme is acetylneuraminyl hydrolase
           or exo-alpha-sialidase, that hydrolyses glycosidic
           linkages of terminal sialic acid residues in
           oligosaccharides, glycoproteins, glycolipids, colominic
           acid and synthetic substrates.
          Length = 332

 Score = 25.9 bits (57), Expect = 8.4
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 11/74 (14%)

Query: 122 YLAELKVSVPVTRIARFKT-------GIQMISIGFLLAGPACENQTSYITGTGIILLWIS 174
           YLA+ K S+    I++ KT           I +   L G    N  SY   TGI+ L  +
Sbjct: 212 YLADSKSSMRAQAISKPKTFNVYGFGNGNKIGLDLPLVGNPWNNAYSYDATTGILTLRGN 271

Query: 175 ALLT----IYSGYD 184
            LL+    I  GY+
Sbjct: 272 GLLSQNFNIGLGYN 285


>gnl|CDD|179715 PRK04024, PRK04024, cofactor-independent phosphoglycerate mutase;
           Provisional.
          Length = 412

 Score = 25.6 bits (57), Expect = 8.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 71  NIGRMLDPIADKLLISSVLLLMTAD 95
            I +ML  I D L +  V + +T D
Sbjct: 322 KIDKMLGYILDNLDLDEVYIAVTGD 346


>gnl|CDD|131719 TIGR02671, cas_csx9, CRISPR-associated protein (provisional), Csx9
           family.  Members of this family, so far, are archaeal
           proteins found in CRISPR-associated (cas) gene regions.
           So far, this rare cas protein is found in only three
           genomes: Pyrococcus horikoshii shinkaj OT3, Pyrococcus
           abyssi GE5, and Thermococcus kodakarensis KOD1. In each
           case it is found immediately upstream of cas3 in loci
           that resemble the Apern type but lack Csa1 and Csa4
           genes.
          Length = 377

 Score = 25.7 bits (56), Expect = 9.0
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 91  LMTADGTINRYSIWAAITILCREIL--VSGLREYLAELKV 128
           L     T+ +Y +WA + I  +E+   VSG RE LA + V
Sbjct: 281 LKEGGATVEKYPLWALVDIAEKELWKGVSGDREMLAYIFV 320


>gnl|CDD|118190 pfam09658, Cas_Csx9, CRISPR-associated protein (Cas_Csx9).
           Clusters of short DNA repeats with nonhomologous
           spacers, which are found at regular intervals in the
           genomes of phylogenetically distinct prokaryotic
           species, comprise a family with recognisable features.
           This family is known as CRISPR (short for Clustered,
           Regularly Interspaced Short Palindromic Repeats). A
           number of protein families appear only in association
           with these repeats and are designated Cas
           (CRISPR-Associated) proteins. This entry describes
           archaeal proteins encoded in cas gene regions.
          Length = 377

 Score = 25.7 bits (56), Expect = 9.0
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 91  LMTADGTINRYSIWAAITILCREIL--VSGLREYLAELKV 128
           L     T+ +Y +WA + I  +E+   VSG RE LA + V
Sbjct: 281 LKEGGATVEKYPLWALVDIAEKELWKGVSGDREMLAYIFV 320


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.327    0.141    0.423 

Gapped
Lambda     K      H
   0.267   0.0613    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,345,379
Number of extensions: 208373
Number of successful extensions: 576
Number of sequences better than 10.0: 1
Number of HSP's gapped: 565
Number of HSP's successfully gapped: 29
Length of query: 200
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 111
Effective length of database: 4,071,361
Effective search space: 451921071
Effective search space used: 451921071
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.2 bits)