RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780600|ref|YP_003065013.1|
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
         (200 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.3 bits (81), Expect = 0.010
 Identities = 33/280 (11%), Positives = 78/280 (27%), Gaps = 127/280 (45%)

Query: 17  ILVVPLIVLCFF------IQEIGSFTSPNLMRWIA---LSLFTI----ASITDFFDGYLA 63
           ++    ++  +        +     ++  L R +      L  I     +  D+F+  L 
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE-LR 174

Query: 64  RVWNQ-TSNIGRMLDPIADKLLISSVLLLMTADGTINRYSIWAAITILCREI-LVSGL-- 119
            ++      +G ++   A+  L     L+ T       ++         + + ++  L  
Sbjct: 175 DLYQTYHVLVGDLIKFSAE-TLSE---LIRTTLDAEKVFT---------QGLNILEWLEN 221

Query: 120 ------REYLAELKVSVP---VTRIARFKTGIQMISIGFLLAGPACE--NQT-----SYI 163
                 ++YL  + +S P   V ++A +     ++           +    T     SY+
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHY-----VV---------TAKLLGFTPGELRSYL 267

Query: 164 TGT-----GII------------------------LLWI--------------------- 173
            G      G++                        L +I                     
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327

Query: 174 --------SALLTIYSGYDYFRVGIKHIDS------EDKQ 199
                   S +L+I S     +V   +++         KQ
Sbjct: 328 LENNEGVPSPMLSI-SNLTQEQV-QDYVNKTNSHLPAGKQ 365



 Score = 26.1 bits (57), Expect = 6.1
 Identities = 22/127 (17%), Positives = 36/127 (28%), Gaps = 47/127 (37%)

Query: 61  YLARVWNQTSNIGRMLDPIADKLLISSVLLLM----TADGTINRY---SIWAAITILCRE 113
            L      +  I    D + + +  ++  + +    T DG+  R    SI      +   
Sbjct: 431 LLVPA---SDLI--NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI---SERIVDC 482

Query: 114 ILVSGLREYLAELKV------SVPVTRI---------------ARFK--TGIQMISIGFL 150
           I           L V          T I                R K  TG+++I  G L
Sbjct: 483 I---------IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533

Query: 151 LAGPACE 157
              P  +
Sbjct: 534 DINPDDD 540


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl
            reductase, beta-ketoacyl synthase, dehydratase; 4.00A
            {Saccharomyces cerevisiae}
          Length = 1688

 Score = 33.2 bits (75), Expect = 0.039
 Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 39/191 (20%)

Query: 27   FFIQEIGSFTSPNLMRWIALSLFTIASITDFFD---------GYLARVWNQTSNIGRMLD 77
            F I E G + S  L++    +L+   ++   FD         G+ A+ +  + +I   +D
Sbjct: 956  FEIPETGEY-SVKLLK--GATLYIPKALR--FDRLVAGQIPTGWNAKTYGISDDIISQVD 1010

Query: 78   PIADKLLISSVLLLMTADGTINRYSIWAAITILCREI---------LVSGLREYLAELKV 128
            PI   +L+ SV+    A G  + Y ++  + +   E+          VS LR    +   
Sbjct: 1011 PITLFVLV-SVVEAFIASGITDPYEMYKYVHV--SEVGNCSGSGMGGVSALRGMFKDRFK 1067

Query: 129  SVPVTRIARFKTGIQMIS--IGFLL---AGP------ACENQTSYI-TGTGIILLWISAL 176
              PV      ++ I  +S  +  LL   +GP      AC      +  G   IL    A 
Sbjct: 1068 DEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSG-KAR 1126

Query: 177  LTIYSGYDYFR 187
            + I  GYD F+
Sbjct: 1127 ICIVGGYDDFQ 1137


>3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling
           protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB:
           3nvq_B*
          Length = 476

 Score = 28.2 bits (62), Expect = 1.4
 Identities = 23/109 (21%), Positives = 33/109 (30%), Gaps = 19/109 (17%)

Query: 27  FFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYLARVWNQTSNIGR-----MLDPIAD 81
            F    G           AL LF ++ I               S+         + PIA 
Sbjct: 275 VFSAAAGEGQERRSPTTTALCLFRMSEIQARAKRVSWDFKTAESHCKEGDQPERVQPIAS 334

Query: 82  KLLISS--------------VLLLMTADGTINRYSIWAAITILCREILV 116
             LI S              VL L T DG + +  +   +T  C E++ 
Sbjct: 335 STLIHSDLTSVYGTVVMNRTVLFLGTGDGQLLKVILGENLTSNCPEVIY 383


>1e32_A P97; membrane fusion; HET: ADP; 2.9A {Mus musculus} SCOP: b.52.2.3
           c.37.1.20 d.31.1.1 PDB: 1s3s_A* 2pjh_B
          Length = 458

 Score = 26.9 bits (59), Expect = 3.1
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 13/75 (17%)

Query: 116 VSGLREYLAELK--VSVPVTRIARFKTGIQMISIGFLLAGPACENQTSYITGTGIILLWI 173
           V G R+ LA++K  V +P+   A FK        G LL GP          GTG  L+  
Sbjct: 206 VGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPP---------GTGKTLI-- 254

Query: 174 SALLTIYSGYDYFRV 188
           +  +   +G  +F +
Sbjct: 255 ARAVANETGAFFFLI 269


>3efo_B SEC24 related gene family, member D; copii, coat protein,
          transport signal, disease mutation, endoplasmic
          reticulum, ER-golgi transport, golgi apparatus,
          membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
          Length = 770

 Score = 25.8 bits (56), Expect = 7.7
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 13 TYGRILVVPLIVLCFFIQEIGSFTSPNLMRW 43
          T  R  + PL+     IQ+ G+  SP  +R 
Sbjct: 23 TNTRGQIPPLVTTDCMIQDQGN-ASPRFIRC 52


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.327    0.141    0.423 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,740,024
Number of extensions: 75661
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 15
Length of query: 200
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 112
Effective length of database: 3,559,758
Effective search space: 398692896
Effective search space used: 398692896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.1 bits)