BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780600|ref|YP_003065013.1|
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
(200 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780600|ref|YP_003065013.1| CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 200
Score = 405 bits (1040), Expect = e-115, Method: Compositional matrix adjust.
Identities = 200/200 (100%), Positives = 200/200 (100%)
Query: 1 MASRSYNIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDG 60
MASRSYNIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDG
Sbjct: 1 MASRSYNIPNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDG 60
Query: 61 YLARVWNQTSNIGRMLDPIADKLLISSVLLLMTADGTINRYSIWAAITILCREILVSGLR 120
YLARVWNQTSNIGRMLDPIADKLLISSVLLLMTADGTINRYSIWAAITILCREILVSGLR
Sbjct: 61 YLARVWNQTSNIGRMLDPIADKLLISSVLLLMTADGTINRYSIWAAITILCREILVSGLR 120
Query: 121 EYLAELKVSVPVTRIARFKTGIQMISIGFLLAGPACENQTSYITGTGIILLWISALLTIY 180
EYLAELKVSVPVTRIARFKTGIQMISIGFLLAGPACENQTSYITGTGIILLWISALLTIY
Sbjct: 121 EYLAELKVSVPVTRIARFKTGIQMISIGFLLAGPACENQTSYITGTGIILLWISALLTIY 180
Query: 181 SGYDYFRVGIKHIDSEDKQE 200
SGYDYFRVGIKHIDSEDKQE
Sbjct: 181 SGYDYFRVGIKHIDSEDKQE 200
>gi|254780578|ref|YP_003064991.1| phosphatidylserine synthase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 298
Score = 31.2 bits (69), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 9 PNMLTYGRILVVPLIVLCFFIQEIGSFTSPNLMRWIALSLFTIASITDFFDGYLARVWNQ 68
PN++T ++ +C IGS N A+ + +A+ D DG +AR
Sbjct: 58 PNLVT--------ILAICAGFSGIGSAIEGNYE--TAVCMVLVAAFLDGIDGRIARFMEA 107
Query: 69 TSNIGRMLDPIAD 81
TS G LD +AD
Sbjct: 108 TSKFGAQLDSLAD 120
>gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 474
Score = 25.8 bits (55), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 30 QEIGSFTSPNLMRWIALSLFTIASITDFFDGYLARV 65
+EI F+SP L++ I L A D FD ++++
Sbjct: 399 KEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSKI 434
>gi|254780703|ref|YP_003065116.1| putative phosphate transport system protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 229
Score = 24.6 bits (52), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 105 AAITILCREILVSGLREYLAELKVSVPVTRIA 136
A ITI R+ + S LRE + +K++ + RI
Sbjct: 67 AIITIAKRQPMASDLREIVGSIKIAADLERIG 98
>gi|254781033|ref|YP_003065446.1| HemY domain-containing protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 492
Score = 24.6 bits (52), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 29 IQEIGSFTSPNLMRWIALSLFTIAS---ITDFFDGYLARVWNQTSNIGRML 76
I++ S + ++ W +L + I+D DGYL+ VW S I + L
Sbjct: 367 IEQANSHNTDKILYWTQSALHAMPDPLWISD--DGYLSSVWLPLSPISKTL 415
>gi|254781049|ref|YP_003065462.1| succinyl-CoA synthetase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 398
Score = 24.3 bits (51), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 31/53 (58%)
Query: 80 ADKLLISSVLLLMTADGTINRYSIWAAITILCREILVSGLREYLAELKVSVPV 132
AD+ +++ ++T+D ++ I I+ ++LV G+ + E+K+++P+
Sbjct: 303 ADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPL 355
>gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 263
Score = 23.9 bits (50), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 32 IGSFTSPNLMRWIALSLFTIASITDFFDGYLARVWNQTS 70
+G +PN++ W+A + FDG++ V +
Sbjct: 57 VGMVVTPNILEWVAFPEENV------FDGFIDDVHQPNA 89
>gi|255764485|ref|YP_003065139.2| hypothetical protein CLIBASIA_03065 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 243
Score = 23.5 bits (49), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 86 SSVLLLMTADGTINRYSIWAAITILCREILVSGL-------REYLAELKVSVPVTRIARF 138
+SVL L+ T++ SI A+ + + I+ SG+ R Y A+ + V R++ F
Sbjct: 114 ASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYF 173
Query: 139 KTGIQMISIGF 149
+ GF
Sbjct: 174 ASKPSAGKCGF 184
>gi|254780577|ref|YP_003064990.1| phosphatidylserine decarboxylase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 232
Score = 22.7 bits (47), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 170 LLWISALLTIYSGYDYFR 187
LLW A+LT++ Y +FR
Sbjct: 39 LLWFGAILTVWCAY-FFR 55
>gi|254780430|ref|YP_003064843.1| nitrogen fixation protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 189
Score = 22.3 bits (46), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 170 LLWISALLTIYSGYDYFRVGIKHIDSE 196
+ I + ++Y GYD+ VG D E
Sbjct: 45 IFSIPGIASVYFGYDFITVGKDQYDWE 71
>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
psy62]
Length = 820
Score = 21.9 bits (45), Expect = 7.0, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 78 PIADKLLISSVLLLMTADGTINRYSIWAAITILCREILVSGLRE-YLAEL-----KVSVP 131
P A + ++++ +MT ++ +T+ R + + GL+E LA L KV +P
Sbjct: 694 PSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLKEKLLAALRAGVTKVLIP 753
Query: 132 VTRIARF-------KTGIQMISIGFL 150
I K G+++I + F+
Sbjct: 754 EENIKDLMDIPENVKNGLEIIPVSFM 779
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.327 0.141 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,761
Number of Sequences: 1233
Number of extensions: 4414
Number of successful extensions: 20
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 12
length of query: 200
length of database: 328,796
effective HSP length: 70
effective length of query: 130
effective length of database: 242,486
effective search space: 31523180
effective search space used: 31523180
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 36 (18.5 bits)