HHsearch alignment for GI: 254780601 and conserved domain: COG0513

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].

Probab=96.38  E-value=0.057  Score=32.46  Aligned_cols=68  Identities=22%  Similarity=0.430  Sum_probs=51.7

Q ss_pred             EEEECCCHHHHHHHHHHHHHC-----CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECC-----CCCCC-CCCCCCCE
Q ss_conf             677513023345655555422-----66630104899999999998665448814998538-----65001-45788733
Q gi|254780601|r  247 AIVFCSTRASVSRFTKVLAEH-----LFQVVALSGELSQQERSNALQMMRDGRARVCIATD-----VAARG-IDLPDLEL  315 (573)
Q Consensus       247 ~ivF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TD-----vaaRG-iDi~~v~~  315 (573)
T Consensus       102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~g-~~ivVaTPGRllD~i~~~~l~l~~v~~  177 (513)
T COG0513         102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVET  177 (513)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH---HHHHCC-CCEEEECCCHHHHHHHCCCCCCCCEEE
T ss_conf             6997799999999999999998624584299998998989999---987249-989997960899998648855465018


Q ss_pred             EEE
Q ss_conf             897
Q gi|254780601|r  316 VIH  318 (573)
Q Consensus       316 Vin  318 (573)
T Consensus       178 lVl  180 (513)
T COG0513         178 LVL  180 (513)
T ss_pred             EEE
T ss_conf             996