HHsearch alignment for GI: 254780601 and conserved domain: COG0553
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].
Probab=98.19 E-value=1.4e-05 Score=56.63 Aligned_cols=122 Identities=16% Similarity=0.229 Sum_probs=101.3
Q ss_pred HHHHHHHHCC-C--CCCCC--EEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC--CEEEEEECC
Q ss_conf 0245542001-0--23564--167751302334565555542266630104899999999998665448--814998538
Q gi|254780601|r 230 DRDNAIVNIL-R--YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG--RARVCIATD 302 (573)
Q Consensus 230 ~k~~~l~~ll-~--~~~~~--~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g--~~~vLV~TD 302 (573)
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~vflls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEHH
T ss_conf 05689999988899862777234888666059999999998558757987378752128899999864667757997530
Q ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEE--EEEECHH
Q ss_conf 650014578873389705887478999860301037888602--5640599
Q gi|254780601|r 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS--VFVIPQN 351 (573)
Q Consensus 303 vaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~a--i~l~~~~ 351 (573)
T Consensus 772 agg~glnLt~a~~vi~~d~~wNp~~e~Qa~dRa~RigQ~~~v~v~r~i~~~ 822 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRG 822 (866)
T ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCC
T ss_conf 057661214565246607763667999999878760780159999841137