HHsearch alignment for GI: 254780601 and conserved domain: COG0610
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].
Probab=96.98 E-value=0.034 Score=33.98 Aligned_cols=308 Identities=20% Similarity=0.140 Sum_probs=148.0
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
Q ss_conf 96999928987468999999999861042122556882799984998999999999999854469879999889987999
Q gi|254780601|r 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117 (573)
Q Consensus 38 ~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q 117 (573)
T Consensus 274 ~~G~IWHtqGSGKTltm~~~A-~~l~-~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~L 342 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLL-EL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSEL 342 (962)
T ss_pred CCEEEEECCCCCHHHHHHHHH-HHHH-HC-----CCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCC----CCCCHHHH
T ss_conf 723898406983789999999-9998-36-----5999699996728899999999999887632044----44579999
Q ss_pred HHHHCCCC-EEEEECCCCHHHHHHCC-CCCCC-CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECC------
Q ss_conf 99612897-59982231013321000-12246-43189996131100100123578887521433422563111------
Q gi|254780601|r 118 RRDLQNGA-HIVVGTPGRLCDHIRGK-GLNIS-HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT------ 188 (573)
Q Consensus 118 ~~~l~~~~-~iiv~TPgrl~d~~~~~-~l~l~-~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT------ 188 (573)
T Consensus 343 k~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~-G~~--~~~~~~~~~~-a~~~gFTGTPi~~~d 418 (962)
T COG0610 343 KELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY-GEL--AKLLKKALKK-AIFIGFTGTPIFKED 418 (962)
T ss_pred HHHHHCCCCCEEEEEECCCCHHHHCCCCCCCCCCCEEEEEECCCCCCC-HHH--HHHHHHHHCC-CEEEEEECCCCCCCC
T ss_conf 999865898489997102643333332000478767999864010356-078--9999987036-708975178564022
Q ss_pred ----------------CCCCCHHHHHHHCCCCCCCCCC-CCCCCCCCCCHHCC---------------CCC---------
Q ss_conf ----------------1222001111210123333233-32325665200000---------------000---------
Q gi|254780601|r 189 ----------------ISPAITTLAKNYQKDAVRVNIA-SENRQHSDIDYRAV---------------LVA--------- 227 (573)
Q Consensus 189 ----------------~~~~i~~l~~~~~~~p~~i~~~-~~~~~~~~i~~~~~---------------~v~--------- 227 (573)
T Consensus 419 ~~tt~~~fg~ylh~Y~i~~aI~Dg~v--l--~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 494 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAV--L--PVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFL 494 (962)
T ss_pred CCCHHHHHCCEEEEEECCHHHCCCCE--E--EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 42035551744799865223235763--3--2584031234532001245666669998422799999999987555687
Q ss_pred ---CCHHHHHHHHC----CC-CCCCCEEEEECCCHHHHHHHHHHHHHC-------CCCCCC------CCCCC--------
Q ss_conf ---00024554200----10-235641677513023345655555422-------666301------04899--------
Q gi|254780601|r 228 ---LSDRDNAIVNI----LR-YHGAKNAIVFCSTRASVSRFTKVLAEH-------LFQVVA------LSGEL-------- 278 (573)
Q Consensus 228 ---~~~k~~~l~~l----l~-~~~~~~~ivF~~t~~~~~~l~~~L~~~-------g~~~~~------lhg~~-------- 278 (573)
T Consensus 495 ~~~~~r~~~~a~~~~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 574 (962)
T COG0610 495 AMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHA 574 (962)
T ss_pred HHCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 51448899999999999986115583599998416878776788877515566653005289998613223202344557
Q ss_pred -CHHHHHHHHHH--HHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCC--C-CC-CEEEEEECHH
Q ss_conf -99999999866--5448814998538650014578873389705887478999860301037--8-88-6025640599
Q gi|254780601|r 279 -SQQERSNALQM--MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--G-RK-GMSVFVIPQN 351 (573)
Q Consensus 279 -~q~~R~~~~~~--fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRa--g-~~-G~ai~l~~~~ 351 (573)
T Consensus 575 ~~~~~~~~~~~r~~~~~d~~kllIV~dMlLTGFDaP~L-~TmYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g-~ 652 (962)
T COG0610 575 KLKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCL-NTLYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG-L 652 (962)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC-CEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCC-H
T ss_conf 77777653323212757787689997762046775420-126744554433189999886458878888957997814-6
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 999999999985066
Q gi|254780601|r 352 MQRRAERLFREANVS 366 (573)
Q Consensus 352 e~~~~~~i~~~~~~~ 366 (573)
T Consensus 653 ~e~~~~Al~~y~~~~ 667 (962)
T COG0610 653 KEALKKALKLYSNEG 667 (962)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999975135