HHsearch alignment for GI: 254780601 and conserved domain: COG1110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair].
Probab=99.91 E-value=5.1e-22 Score=167.27 Aligned_cols=281 Identities=22% Similarity=0.322 Sum_probs=194.6
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 78798789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
T Consensus 78 ~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a~--------kgkr~yii~PT~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 78 ATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLAK--------KGKRVYIIVPTTTLVRQVYERLKK 147 (1187)
T ss_pred HHCC-CCHHHHHHHHHHHHCCCCEEEECCCCCCHHH-HHHHHHHHHHH--------CCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 6389-8607889999998737844898278876547-99999999875--------587499996678999999999999
Q ss_pred HHHHCC-CEEEEEECCC-CHHHHH---HHHCC-CCEEEEECCCCHHHHHHCCCCCCC--CCEEEEEECCCCCCC------
Q ss_conf 854469-8799998899-879999---96128-975998223101332100012246--431899961311001------
Q gi|254780601|r 97 LYAKTG-VVVAVCIGGV-SVHRER---RDLQN-GAHIVVGTPGRLCDHIRGKGLNIS--HLKAVVLDEADEMLD------ 162 (573)
Q Consensus 97 l~~~~~-~~v~~~~gg~-~~~~q~---~~l~~-~~~iiv~TPgrl~d~~~~~~l~l~--~v~~lVlDEaD~ml~------ 162 (573)
T Consensus 148 ~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e----~L~~~kFdfifVDDVDA~LkaskNvD 223 (1187)
T COG1110 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFE----ELSKLKFDFIFVDDVDAILKASKNVD 223 (1187)
T ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHH----HHCCCCCCEEEECCHHHHHHCCCCHH
T ss_conf 88653785246653123665779999999865996399974787886699----84045777899804788986344488
Q ss_pred -----CHHHHH-HH----------------------HHHHH--------CCCCCCEEEEECCCCCCCHHHHHHHCCCCCC
Q ss_conf -----001235-78----------------------88752--------1433422563111122200111121012333
Q gi|254780601|r 163 -----LGFRDD-IE----------------------FILDS--------SPKKRRMLMFSATISPAITTLAKNYQKDAVR 206 (573)
Q Consensus 163 -----~gf~~~-i~----------------------~i~~~--------~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~ 206 (573)
T Consensus 224 riL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~--~LfReLlg 301 (1187)
T COG1110 224 RLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRL--KLFRELLG 301 (1187)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHH--HHHHHHHC
T ss_conf 8999808887888888999999998632236778999999888888775047736999605578777438--89999839
Q ss_pred CCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHCCCCCCCCEEEEECCC---HHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 32333232566520000000000024554200102356416775130---233456555554226663010489999999
Q gi|254780601|r 207 VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST---RASVSRFTKVLAEHLFQVVALSGELSQQER 283 (573)
Q Consensus 207 i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~~ll~~~~~~~~ivF~~t---~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R 283 (573)
T Consensus 302 FevG~~~~~LRNIvD~y~~~~~~e~~~elvk---~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~ 372 (1187)
T COG1110 302 FEVGSGGEGLRNIVDIYVESESLEKVVELVK---KL-GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----K 372 (1187)
T ss_pred CCCCCCCHHHHHEEEEECCCCCHHHHHHHHH---HH-CCCEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECC-----C
T ss_conf 8567640313000442036863788999999---84-8974999971773899999999998669607986232-----0
Q ss_pred HHHHHHHHCCCEEEEEE----CCCCCCCCCCCC-CCEEEEECCC
Q ss_conf 99986654488149985----386500145788-7338970588
Q gi|254780601|r 284 SNALQMMRDGRARVCIA----TDVAARGIDLPD-LELVIHAELS 322 (573)
Q Consensus 284 ~~~~~~fr~g~~~vLV~----TDvaaRGiDi~~-v~~Vin~d~P 322 (573)
T Consensus 373 ~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 373 EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred HHHHHHHCCCCEEEEEEECCCCCCEEECCCCHHHEEEEEEECCC
T ss_conf 22456650676017998502134302247743454578995587