HHsearch alignment for GI: 254780601 and conserved domain: COG1201
>COG1201 Lhr Lhr-like helicases [General function prediction only].
Probab=100.00 E-value=0 Score=343.10 Aligned_cols=361 Identities=22% Similarity=0.321 Sum_probs=275.6
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEC
Q ss_conf 97779988999999978798789899999999975996999928987468999999999861042122556882799984
Q gi|254780601|r 2 KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81 (573)
Q Consensus 2 ~~f~~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~ 81 (573)
T Consensus 3 ~~~~~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~~~~~~~i~~lYIs 80 (814)
T COG1201 3 EIFNILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-KGKLEDGIYALYIS 80 (814)
T ss_pred CHHHHCCHHHHHHHHHH-CCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC-CCCCCCCEEEEEEC
T ss_conf 33443489999999985-08998789999999858984699868999737999999999998606-88888856999957
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCC--CCCCCEEEEEECCCC
Q ss_conf 998999999999999854469879999889987999996128975998223101332100012--246431899961311
Q gi|254780601|r 82 PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL--NISHLKAVVLDEADE 159 (573)
Q Consensus 82 PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l--~l~~v~~lVlDEaD~ 159 (573)
T Consensus 81 PLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHe 160 (814)
T COG1201 81 PLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHA 160 (814)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHCCCCCCCEEEECHHHHHHHHCCHHHHHHHCCCCEEEEEHHHH
T ss_conf 07888789999999999975984444228788677630469999689958348999836888999860780999512545
Q ss_pred CCCC--HH--HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCC---CCCCCCCCCCCCCCCCCCHHCCCCCC----
Q ss_conf 0010--01--2357888752143342256311112220011112101---23333233323256652000000000----
Q gi|254780601|r 160 MLDL--GF--RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK---DAVRVNIASENRQHSDIDYRAVLVAL---- 228 (573)
Q Consensus 160 ml~~--gf--~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~---~p~~i~~~~~~~~~~~i~~~~~~v~~---- 228 (573)
T Consensus 161 l~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~v-arfL~g~~~~~~Iv~~~~~k~---~~i~v-~~p~~~~~ 233 (814)
T COG1201 161 LAESKRGVQLALSLERLRELAG-DFQRIGLSATVGPP-EEV-AKFLVGFGDPCEIVDVSAAKK---LEIKV-ISPVEDLI 233 (814)
T ss_pred HHCCCCCHHHHHHHHHHHHHCC-CCEEEEEHHCCCCH-HHH-HHHHCCCCCCEEEEECCCCCC---CEEEE-EECCCCCC
T ss_conf 4345653134332999985175-53797540215888-999-998547898429997456775---31799-80477500
Q ss_pred ------CHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCC-CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf ------0024554200102356416775130233456555554226-663010489999999999866544881499853
Q gi|254780601|r 229 ------SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIAT 301 (573)
Q Consensus 229 ------~~k~~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g-~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~T 301 (573)
T Consensus 234 ~~~~~~~~~~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~T 311 (814)
T COG1201 234 YDEELWAALYERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVAT 311 (814)
T ss_pred CCCCHHHHHHHHHHHHHHHC--CCEEEEEECHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 02624678999999999616--8589997272789999999987268755653166657789999999866886299980
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCC-CCCCCEEEEEECH-HHHHHHHHHHHHH-HCCCCCCCCC
Q ss_conf 865001457887338970588747899986030103-7888602564059-9999999999985-0664105689
Q gi|254780601|r 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQ-NMQRRAERLFREA-NVSVVWEPAP 373 (573)
Q Consensus 302 DvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgR-ag~~G~ai~l~~~-~e~~~~~~i~~~~-~~~~~~~~~P 373 (573)
T Consensus 312 SSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~ 386 (814)
T COG1201 312 SSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIP 386 (814)
T ss_pred CCHHHCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 642205024774299981793888888685031466568864279981679999999999999971876667788