HHsearch alignment for GI: 254780601 and conserved domain: COG1201

>COG1201 Lhr Lhr-like helicases [General function prediction only].
Probab=100.00  E-value=0  Score=343.10  Aligned_cols=361  Identities=22%  Similarity=0.321  Sum_probs=275.6

Q ss_pred             CCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEC
Q ss_conf             97779988999999978798789899999999975996999928987468999999999861042122556882799984
Q gi|254780601|r    2 KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA   81 (573)
Q Consensus         2 ~~f~~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~   81 (573)
T Consensus         3 ~~~~~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~~~~~~~i~~lYIs   80 (814)
T COG1201           3 EIFNILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-KGKLEDGIYALYIS   80 (814)
T ss_pred             CHHHHCCHHHHHHHHHH-CCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC-CCCCCCCEEEEEEC
T ss_conf             33443489999999985-08998789999999858984699868999737999999999998606-88888856999957


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCC--CCCCCEEEEEECCCC
Q ss_conf             998999999999999854469879999889987999996128975998223101332100012--246431899961311
Q gi|254780601|r   82 PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL--NISHLKAVVLDEADE  159 (573)
Q Consensus        82 PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l--~l~~v~~lVlDEaD~  159 (573)
T Consensus        81 PLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHe  160 (814)
T COG1201          81 PLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHA  160 (814)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHCCCCCCCEEEECHHHHHHHHCCHHHHHHHCCCCEEEEEHHHH
T ss_conf             07888789999999999975984444228788677630469999689958348999836888999860780999512545


Q ss_pred             CCCC--HH--HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCC---CCCCCCCCCCCCCCCCCCHHCCCCCC----
Q ss_conf             0010--01--2357888752143342256311112220011112101---23333233323256652000000000----
Q gi|254780601|r  160 MLDL--GF--RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK---DAVRVNIASENRQHSDIDYRAVLVAL----  228 (573)
Q Consensus       160 ml~~--gf--~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~---~p~~i~~~~~~~~~~~i~~~~~~v~~----  228 (573)
T Consensus       161 l~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~v-arfL~g~~~~~~Iv~~~~~k~---~~i~v-~~p~~~~~  233 (814)
T COG1201         161 LAESKRGVQLALSLERLRELAG-DFQRIGLSATVGPP-EEV-AKFLVGFGDPCEIVDVSAAKK---LEIKV-ISPVEDLI  233 (814)
T ss_pred             HHCCCCCHHHHHHHHHHHHHCC-CCEEEEEHHCCCCH-HHH-HHHHCCCCCCEEEEECCCCCC---CEEEE-EECCCCCC
T ss_conf             4345653134332999985175-53797540215888-999-998547898429997456775---31799-80477500


Q ss_pred             ------CHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCC-CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             ------0024554200102356416775130233456555554226-663010489999999999866544881499853
Q gi|254780601|r  229 ------SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIAT  301 (573)
Q Consensus       229 ------~~k~~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g-~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~T  301 (573)
T Consensus       234 ~~~~~~~~~~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~T  311 (814)
T COG1201         234 YDEELWAALYERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVAT  311 (814)
T ss_pred             CCCCHHHHHHHHHHHHHHHC--CCEEEEEECHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             02624678999999999616--8589997272789999999987268755653166657789999999866886299980


Q ss_pred             CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCC-CCCCCEEEEEECH-HHHHHHHHHHHHH-HCCCCCCCCC
Q ss_conf             865001457887338970588747899986030103-7888602564059-9999999999985-0664105689
Q gi|254780601|r  302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQ-NMQRRAERLFREA-NVSVVWEPAP  373 (573)
Q Consensus       302 DvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgR-ag~~G~ai~l~~~-~e~~~~~~i~~~~-~~~~~~~~~P  373 (573)
T Consensus       312 SSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~  386 (814)
T COG1201         312 SSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIP  386 (814)
T ss_pred             CCHHHCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             642205024774299981793888888685031466568864279981679999999999999971876667788