HHsearch alignment for GI: 254780601 and conserved domain: COG1202
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only].
Probab=100.00 E-value=1.4e-34 Score=251.65 Aligned_cols=333 Identities=23% Similarity=0.290 Sum_probs=253.8
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCH
Q ss_conf 9988999999978798789899999999-975996999928987468999999999861042122556882799984998
Q gi|254780601|r 6 NIPQVIGEALSERGYVNLTSVQEAILNP-DLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTR 84 (573)
Q Consensus 6 ~l~~~l~~~l~~~g~~~pt~iQ~~~ip~-~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTr 84 (573)
T Consensus 200 dipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~--------KmlfLvPLV 271 (830)
T COG1202 200 DIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGK--------KMLFLVPLV 271 (830)
T ss_pred CCCHHHHHHHHHCCCCEECCHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHCCHHHHHCCC--------EEEEEEHHH
T ss_conf 875999999986386443023465566144057734999405777514777637387883787--------289973168
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH----CCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf 9999999999998544698799998899879999961----289759982231013321000122464318999613110
Q gi|254780601|r 85 ELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL----QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 (573)
Q Consensus 85 ELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l----~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~m 160 (573)
T Consensus 272 ALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGi-D~lLRtg~~lgdiGtVVIDEiHtL 350 (830)
T COG1202 272 ALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGI-DYLLRTGKDLGDIGTVVIDEIHTL 350 (830)
T ss_pred HHHCCHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCEEEEECHHH-HHHHHCCCCCCCCCEEEEEEEEEC
T ss_conf 7631118999998650166278884234522467753568998776798611107-899870785554435996501204
Q ss_pred CC--CHHH--HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHH
Q ss_conf 01--0012--3578887521433422563111122200111121012333323332325665200000000000245542
Q gi|254780601|r 161 LD--LGFR--DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 (573)
Q Consensus 161 l~--~gf~--~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~ 236 (573)
T Consensus 351 ~deERG~RLdGLI~RL-r~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV----~y~~RPVplErHlvf~~~e~eK~~ii~ 424 (830)
T COG1202 351 EDEERGPRLDGLIGRL-RYLFPGAQFIYLSATVGNP-EELAKKLGAKLV----LYDERPVPLERHLVFARNESEKWDIIA 424 (830)
T ss_pred CCHHCCCCHHHHHHHH-HHHCCCCEEEEEEEECCCH-HHHHHHHCCEEE----EECCCCCCHHHEEEEECCCHHHHHHHH
T ss_conf 4010163235289999-9867777499987433886-999988387258----655887873670664048167778999
Q ss_pred HCCCCC--------CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 001023--------564167751302334565555542266630104899999999998665448814998538650014
Q gi|254780601|r 237 NILRYH--------GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308 (573)
Q Consensus 237 ~ll~~~--------~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGi 308 (573)
T Consensus 425 ~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGV 504 (830)
T COG1202 425 RLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGV 504 (830)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCC
T ss_conf 99999975441137677369994216669999988610786665443798678888899997608755576424564478
Q ss_pred CCCCCCEEEEECCC-----CCHHHHHHHHCCCCCCCC--CCEEEEEECHHHHH
Q ss_conf 57887338970588-----747899986030103788--86025640599999
Q gi|254780601|r 309 DLPDLELVIHAELS-----SNPENLLHRSGRTGRAGR--KGMSVFVIPQNMQR 354 (573)
Q Consensus 309 Di~~v~~Vin~d~P-----~~~~~yvHR~GRtgRag~--~G~ai~l~~~~e~~ 354 (573)
T Consensus 505 DFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y 556 (830)
T COG1202 505 DFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKY 556 (830)
T ss_pred CCCH-HHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHH
T ss_conf 8751-899999987104327899999985046998723373399995577011