HHsearch alignment for GI: 254780601 and conserved domain: COG1202

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only].
Probab=100.00  E-value=1.4e-34  Score=251.65  Aligned_cols=333  Identities=23%  Similarity=0.290  Sum_probs=253.8

Q ss_pred             CCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCH
Q ss_conf             9988999999978798789899999999-975996999928987468999999999861042122556882799984998
Q gi|254780601|r    6 NIPQVIGEALSERGYVNLTSVQEAILNP-DLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTR   84 (573)
Q Consensus         6 ~l~~~l~~~l~~~g~~~pt~iQ~~~ip~-~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTr   84 (573)
T Consensus       200 dipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~--------KmlfLvPLV  271 (830)
T COG1202         200 DIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGK--------KMLFLVPLV  271 (830)
T ss_pred             CCCHHHHHHHHHCCCCEECCHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHCCHHHHHCCC--------EEEEEEHHH
T ss_conf             875999999986386443023465566144057734999405777514777637387883787--------289973168


Q ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH----CCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf             9999999999998544698799998899879999961----289759982231013321000122464318999613110
Q gi|254780601|r   85 ELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL----QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM  160 (573)
Q Consensus        85 ELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l----~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~m  160 (573)
T Consensus       272 ALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGi-D~lLRtg~~lgdiGtVVIDEiHtL  350 (830)
T COG1202         272 ALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGI-DYLLRTGKDLGDIGTVVIDEIHTL  350 (830)
T ss_pred             HHHCCHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCEEEEECHHH-HHHHHCCCCCCCCCEEEEEEEEEC
T ss_conf             7631118999998650166278884234522467753568998776798611107-899870785554435996501204


Q ss_pred             CC--CHHH--HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHH
Q ss_conf             01--0012--3578887521433422563111122200111121012333323332325665200000000000245542
Q gi|254780601|r  161 LD--LGFR--DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV  236 (573)
Q Consensus       161 l~--~gf~--~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~  236 (573)
T Consensus       351 ~deERG~RLdGLI~RL-r~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV----~y~~RPVplErHlvf~~~e~eK~~ii~  424 (830)
T COG1202         351 EDEERGPRLDGLIGRL-RYLFPGAQFIYLSATVGNP-EELAKKLGAKLV----LYDERPVPLERHLVFARNESEKWDIIA  424 (830)
T ss_pred             CCHHCCCCHHHHHHHH-HHHCCCCEEEEEEEECCCH-HHHHHHHCCEEE----EECCCCCCHHHEEEEECCCHHHHHHHH
T ss_conf             4010163235289999-9867777499987433886-999988387258----655887873670664048167778999


Q ss_pred             HCCCCC--------CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf             001023--------564167751302334565555542266630104899999999998665448814998538650014
Q gi|254780601|r  237 NILRYH--------GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI  308 (573)
Q Consensus       237 ~ll~~~--------~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGi  308 (573)
T Consensus       425 ~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGV  504 (830)
T COG1202         425 RLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGV  504 (830)
T ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCC
T ss_conf             99999975441137677369994216669999988610786665443798678888899997608755576424564478


Q ss_pred             CCCCCCEEEEECCC-----CCHHHHHHHHCCCCCCCC--CCEEEEEECHHHHH
Q ss_conf             57887338970588-----747899986030103788--86025640599999
Q gi|254780601|r  309 DLPDLELVIHAELS-----SNPENLLHRSGRTGRAGR--KGMSVFVIPQNMQR  354 (573)
Q Consensus       309 Di~~v~~Vin~d~P-----~~~~~yvHR~GRtgRag~--~G~ai~l~~~~e~~  354 (573)
T Consensus       505 DFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y  556 (830)
T COG1202         505 DFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKY  556 (830)
T ss_pred             CCCH-HHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHH
T ss_conf             8751-899999987104327899999985046998723373399995577011