HHsearch alignment for GI: 254780601 and conserved domain: COG1203
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms].
Probab=99.90 E-value=1.8e-21 Score=163.63 Aligned_cols=320 Identities=19% Similarity=0.198 Sum_probs=201.3
Q ss_pred CCHHHHHHHHHHHCC---C-CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 898999999999759---9-699992898746899999999986104212255688279998499899999999999985
Q gi|254780601|r 23 LTSVQEAILNPDLRE---K-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98 (573)
Q Consensus 23 pt~iQ~~~ip~~l~g---~-d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~ 98 (573)
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC-----CCCCCEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 13556799999873225575189991688871999999999975311-----3545628996558999999999998751
Q ss_pred HHCCCEEEEEECCCCHHHHHH--------HH-------CCCCEEEEECCCCHHHH-HHCCCCC-C--CCCEEEEEECCCC
Q ss_conf 446987999988998799999--------61-------28975998223101332-1000122-4--6431899961311
Q gi|254780601|r 99 AKTGVVVAVCIGGVSVHRERR--------DL-------QNGAHIVVGTPGRLCDH-IRGKGLN-I--SHLKAVVLDEADE 159 (573)
Q Consensus 99 ~~~~~~v~~~~gg~~~~~q~~--------~l-------~~~~~iiv~TPgrl~d~-~~~~~l~-l--~~v~~lVlDEaD~ 159 (573)
T Consensus 271 ~~~~~~~~~~h-~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 271 GLFSVIGKSLH-SSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred CCCCCCCCCCC-CCCHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHCCEEEECHHH
T ss_conf 23554331001-31025565170100225888124223620452220699985574046672577887646778742754
Q ss_pred CCCCHHHHHHHHHHHHCC-CCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCC---CCCCCCCHHCCC-CCCCHHHHH
Q ss_conf 001001235788875214-334225631111222001111210123333233323---256652000000-000002455
Q gi|254780601|r 160 MLDLGFRDDIEFILDSSP-KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN---RQHSDIDYRAVL-VALSDRDNA 234 (573)
Q Consensus 160 ml~~gf~~~i~~i~~~~p-~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~---~~~~~i~~~~~~-v~~~~k~~~ 234 (573)
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 429 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEEL 429 (733)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCEECCHHHHCCCHHHH
T ss_conf 16543089999999999968997899927899799999999850376121344323345543300000111320303776
Q ss_pred HHH-CCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH----CCCEEEEEECCCCCCCCC
Q ss_conf 420-010235641677513023345655555422666301048999999999986654----488149985386500145
Q gi|254780601|r 235 IVN-ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR----DGRARVCIATDVAARGID 309 (573)
Q Consensus 235 l~~-ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr----~g~~~vLV~TDvaaRGiD 309 (573)
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvD 509 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVD 509 (733)
T ss_pred HHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEC
T ss_conf 65567764258828999927899999999985558957998863557669999999988875378629998345998862
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCCCC--CCCEEEEEECHH
Q ss_conf 788733897058874789998603010378--886025640599
Q gi|254780601|r 310 LPDLELVIHAELSSNPENLLHRSGRTGRAG--RKGMSVFVIPQN 351 (573)
Q Consensus 310 i~~v~~Vin~d~P~~~~~yvHR~GRtgRag--~~G~ai~l~~~~ 351 (573)
T Consensus 510 id-fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 510 ID-FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred CC-CCEEEE--CCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 66-684663--478756799987777415666687169983466