HHsearch alignment for GI: 254780601 and conserved domain: COG1204
>COG1204 Superfamily II helicase [General function prediction only].
Probab=100.00 E-value=2.1e-31 Score=230.44 Aligned_cols=327 Identities=25% Similarity=0.301 Sum_probs=232.9
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHH
Q ss_conf 988999999978798789899999999-9759969999289874689999999998610421225568827999849989
Q gi|254780601|r 7 IPQVIGEALSERGYVNLTSVQEAILNP-DLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85 (573)
Q Consensus 7 l~~~l~~~l~~~g~~~pt~iQ~~~ip~-~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrE 85 (573)
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~--------~k~vYivPlkA 87 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGG--------GKVVYIVPLKA 87 (766)
T ss_pred CCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC--------CCEEEEECHHH
T ss_conf 2078998860488477557899874111257986799767888669999999999998559--------83899907599
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHH
Q ss_conf 99999999999854469879999889987999996128975998223101332100012246431899961311001001
Q gi|254780601|r 86 LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165 (573)
Q Consensus 86 La~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf 165 (573)
T Consensus 88 La~Ek~~~~~~~~-~~GirV~~~TgD~~~~~~~--l-~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~R 163 (766)
T COG1204 88 LAEEKYEEFSRLE-ELGIRVGISTGDYDLDDER--L-ARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTR 163 (766)
T ss_pred HHHHHHHHHHHHH-HCCCEEEEECCCCCCCHHH--H-CCCCEEEECHHHHHHHHHCCCCHHHCCCEEEEEEEEECCCCCC
T ss_conf 9999999866688-6597799964886555334--1-4588799746786676506753334016899942101487565
Q ss_pred HHHHHHHHHHCC---CCCCEEEEECCCCCCCHHHHHHHCC-CCCCCCCCC--CCCCCCCCCHHCCCCCCCH-------HH
Q ss_conf 235788875214---3342256311112220011112101-233332333--2325665200000000000-------24
Q gi|254780601|r 166 RDDIEFILDSSP---KKRRMLMFSATISPAITTLAKNYQK-DAVRVNIAS--ENRQHSDIDYRAVLVALSD-------RD 232 (573)
Q Consensus 166 ~~~i~~i~~~~p---~~~q~~l~SAT~~~~i~~l~~~~~~-~p~~i~~~~--~~~~~~~i~~~~~~v~~~~-------k~ 232 (573)
T Consensus 164 G~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~-wL~a~~~~~~~rp~~l~~~v~~-~~~~~~~~~~~k~~~~~~~~ 240 (766)
T COG1204 164 GPVLESIVARMRRLNELIRIVGLSATLPNA-EEVAD-WLNAKLVESDWRPVPLRRGVPY-VGAFLGADGKKKTWPLLIDN 240 (766)
T ss_pred CCEEHHHHHHHHHHCCCEEEEEEEEECCCH-HHHHH-HHCCCCCCCCCCCCCCCCCCCC-CEEEEEECCCCCCCCCCCHH
T ss_conf 864022798888527551798873116888-99999-8588355567788620157765-31798714764345421057
Q ss_pred HHHHHCCCC-CCCCEEEEECCCHHHHHHHHHHHHH--------C-------C---CC-------------------CCCC
Q ss_conf 554200102-3564167751302334565555542--------2-------6---66-------------------3010
Q gi|254780601|r 233 NAIVNILRY-HGAKNAIVFCSTRASVSRFTKVLAE--------H-------L---FQ-------------------VVAL 274 (573)
Q Consensus 233 ~~l~~ll~~-~~~~~~ivF~~t~~~~~~l~~~L~~--------~-------g---~~-------------------~~~l 274 (573)
T Consensus 241 ~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafH 320 (766)
T COG1204 241 LALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFH 320 (766)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 99999999985698699997457259999999999875127716543012234421123554322178999997275411
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEE----EEC-----CCCCHHHHHHHHCCCCCCCC--CCE
Q ss_conf 4899999999998665448814998538650014578873389----705-----88747899986030103788--860
Q gi|254780601|r 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI----HAE-----LSSNPENLLHRSGRTGRAGR--KGM 343 (573)
Q Consensus 275 hg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vi----n~d-----~P~~~~~yvHR~GRtgRag~--~G~ 343 (573)
T Consensus 321 hAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~ 400 (766)
T COG1204 321 HAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGE 400 (766)
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHCCCCCEEEEEEEEEEECCCCCEEECCHHHHHHCCCCCCCCCCCCCCC
T ss_conf 26897889999999986698549995457762168863289991038775778847776414865567679987577782
Q ss_pred EEEEE
Q ss_conf 25640
Q gi|254780601|r 344 SVFVI 348 (573)
Q Consensus 344 ai~l~ 348 (573)
T Consensus 401 ~~i~~ 405 (766)
T COG1204 401 AIILA 405 (766)
T ss_pred EEEEE
T ss_conf 79993