HHsearch alignment for GI: 254780601 and conserved domain: COG3973
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only].
Probab=93.40 E-value=0.62 Score=25.48 Aligned_cols=93 Identities=25% Similarity=0.244 Sum_probs=53.8
Q ss_pred HHHHHHHHHCCCCCCCH----HHHHHHHHHH--CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECC
Q ss_conf 89999999787987898----9999999997--59969999289874689999999998610421225568827999849
Q gi|254780601|r 9 QVIGEALSERGYVNLTS----VQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82 (573)
Q Consensus 9 ~~l~~~l~~~g~~~pt~----iQ~~~ip~~l--~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~P 82 (573)
T Consensus 192 EvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~--R~~-l~~k~vlvl~P 268 (747)
T COG3973 192 EVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGY--RGP-LQAKPVLVLGP 268 (747)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC--CCC-CCCCCEEEECC
T ss_conf 999999986263127789998617677787555787489955888871358899999998535--662-46686599828
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 98999999999999854469879
Q gi|254780601|r 83 TRELAVQVGRELEWLYAKTGVVV 105 (573)
Q Consensus 83 TrELa~Qv~~~~~~l~~~~~~~v 105 (573)
T Consensus 269 N~vFleYis~VLPeLGe~-~V~q 290 (747)
T COG3973 269 NRVFLEYISRVLPELGEE-GVVQ 290 (747)
T ss_pred CHHHHHHHHHHCHHHCCC-CEEE
T ss_conf 389999998755441668-6365