HHsearch alignment for GI: 254780601 and conserved domain: COG4962
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].
Probab=94.96 E-value=0.055 Score=32.55 Aligned_cols=58 Identities=24% Similarity=0.261 Sum_probs=28.2
Q ss_pred CEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC--CCCEEEEECCCCC
Q ss_conf 759982231013321000122464318999613110010012357888752143--3422563111122
Q gi|254780601|r 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSATISP 191 (573)
Q Consensus 125 ~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~--~~q~~l~SAT~~~ 191 (573)
T Consensus 60 ~dImVn~~~~v~v~~-~~~~~--~t~irf~d~~~l------~~ii~ria~~vgrriD~~~P~~darLpd 119 (355)
T COG4962 60 EDIMVNGPGRVFVER-KGGLE--PTDIRFLDEAAL------LRIIQRIAAAVGRRIDESQPIVDARLPD 119 (355)
T ss_pred EEEEECCCCCEEEEE-CCCCC--CCCCCCCCHHHH------HHHHHHHHHHHCCCCCCCCCEEEEECCC
T ss_conf 168862787389993-27454--578624898999------9999999998588104689636526798